D. Nagamani - Related publications

2001 CSIR-National Chemical Laboratory, Pune, India 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Medan J, Sleebs BE, Lackovic K, Watson KG, Evison BJ, Phillips DR, Cutts SM. Development of an automated assay for accelerated in vitro detection of DNA adduct-inducing and crosslinking agents. Bioorganic & Medicinal Chemistry Letters. 127813. PMID 33486050 DOI: 10.1016/j.bmcl.2021.127813   
2021 Maeda R, Bando T, Sugiyama H. Application of DNA-Alkylating Pyrrole-Imidazole Polyamides for Cancer Treatment. Chembiochem : a European Journal of Chemical Biology. PMID 33453075 DOI: 10.1002/cbic.202000752   
2021 Pyne ALB, Noy A, Main KHS, Velasco-Berrelleza V, Piperakis MM, Mitchenall LA, Cugliandolo FM, Beton JG, Stevenson CEM, Hoogenboom BW, Bates AD, Maxwell A, Harris SA. Base-pair resolution analysis of the effect of supercoiling on DNA flexibility and major groove recognition by triplex-forming oligonucleotides. Nature Communications. 12: 1053. PMID 33594049 DOI: 10.1038/s41467-021-21243-y   
2021 Chen JY, Yang LY, Liu ZJ, Wei QX, Zhang Y, Wu B, Zhong GX, Fu LX, Lin XH, Weng XH, Xu XW. DNA Nanosieve-Based Regenerative Electrochemical Biosensor Utilizing Nucleic Acid Flexibility for Accurate Allele Typing in Clinical Samples. Acs Sensors. PMID 33657808 DOI: 10.1021/acssensors.0c02720   
2021 Li F, Yu W, Zhang J, Dong Y, Ding X, Ruan X, Gu Z, Yang D. Spatiotemporally programmable cascade hybridization of hairpin DNA in polymeric nanoframework for precise siRNA delivery. Nature Communications. 12: 1138. PMID 33602916 DOI: 10.1038/s41467-021-21442-7   
2021 Hao Y, Li Y, Song L, Deng Z. Flash Synthesis of Spherical Nucleic Acids with Record DNA Density. Journal of the American Chemical Society. PMID 33599474 DOI: 10.1021/jacs.1c00568   
2021 Lu K, Liu C, Liu Y, Luo A, Chen J, Lei Z, Kong J, Xiao X, Zhang S, Wang YZ, Ma L, Dou SX, Wang PY, Li M, Li G, et al. Curaxin-Induced DNA Topology Alterations Trigger the Distinct Binding Response of CTCF and FACT at the Single-Molecule Level. Biochemistry. PMID 33570402 DOI: 10.1021/acs.biochem.1c00014   
2021 Liu S, Qi J, Lu W, Wang X, Lu X. Synthetic Studies toward DNA-Encoded Heterocycles Based on the On-DNA Formation of α,β-Unsaturated Ketones. Organic Letters. PMID 33444029 DOI: 10.1021/acs.orglett.0c04118   
2021 Chandrasekaran AR. Nuclease resistance of DNA nanostructures. Nature Reviews. Chemistry. 1-15. PMID 33585701 DOI: 10.1038/s41570-021-00251-y   
2021 Wang D, Yu L, Huang CM, Arya G, Chang S, Ke Y. Programmable Transformations of DNA Origami Made of Small Modular Dynamic Units. Journal of the American Chemical Society. PMID 33529009 DOI: 10.1021/jacs.0c10576   
2021 Rattu P, Belzunces B, Haynes T, Skylaris CK, Khalid S. Translocation of flexible and tensioned ssDNA through designed hydrophobic nanopores with two constrictions. Nanoscale. PMID 33434242 DOI: 10.1039/d0nr04890a   
2021 Kölmel DK, Zhu H, Flanagan ME, Sakata SK, Harris AR, Wan J, Morgan BA. Employing Photocatalysis for the Design and Preparation of DNA-encoded Libraries: A Case Study. Chemical Record (New York, N.Y.). PMID 33570227 DOI: 10.1002/tcr.202000148   
2021 Mahalakshmi G, Selvakumar B, Vennila KN, Rao PL, Madhuri S, Seenivasaperumal M, Elango KP. Spectroscopic Studies on the Interaction of Naphthyridines with DNA and Fluorescent Detection of DNA in Agarose Gel. Journal of Fluorescence. PMID 33389419 DOI: 10.1007/s10895-020-02658-0   
2021 Dai L, Liu P, Hu X, Zhao X, Shao G, Tian Y. DNA origami: an outstanding platform for functions in nanophotonics and cancer therapy. The Analyst. PMID 33595553 DOI: 10.1039/d0an02160a   
2021 Zhang Z, Yu S, Zuo H. DNA Ring-Opening Polymerization Driven by Base Stacking. Chembiochem : a European Journal of Chemical Biology. PMID 33404185 DOI: 10.1002/cbic.202000776   
2021 Bao HL, Xu Y. Observation of Z-DNA Structure via the Synthesis of Oligonucleotide DNA Containing 8-Trifluoromethyl-2-Deoxyguanosine. Current Protocols. 1: e28. PMID 33484490 DOI: 10.1002/cpz1.28   
2021 Beyerle ER, Dinpajooh M, Ji H, von Hippel PH, Marcus AH, Guenza MG. Dinucleotides as simple models of the base stacking-unstacking component of DNA 'breathing' mechanisms. Nucleic Acids Research. PMID 33503257 DOI: 10.1093/nar/gkab015   
2021 Chen X, Ali YI, Fisher CE, Arribas-Bosacoma R, Rajasekaran MB, Williams G, Walker S, Booth JR, Hudson JJ, Roe SM, Pearl LH, Ward SE, Pearl FM, Oliver AW. Uncovering an allosteric mode of action for a selective inhibitor of human Bloom syndrome protein. Elife. 10. PMID 33647232 DOI: 10.7554/eLife.65339   
2021 Cai R, Zhang S, Chen L, Li M, Zhang Y, Zhou N. Self-Assembled DNA Nanoflowers Triggered by a DNA Walker for Highly Sensitive Electrochemical Detection of . Acs Applied Materials & Interfaces. PMID 33470807 DOI: 10.1021/acsami.0c22062   
2021 Wu JT, Liu R, Chen YR, Zheng XQ, Wu ZS. The hierarchical assembly of a multi-level DNA ring-based nanostructure in a precise order and its application for screening tumor cells. Biomaterials Science. PMID 33533777 DOI: 10.1039/d0bm00085j   
2021 Zheng H, Botos I, Clausse V, Nikolayevskiy H, Rastede EE, Fouz MF, Mazur SJ, Appella DH. Conformational constraints of cyclopentane peptide nucleic acids facilitate tunable binding to DNA. Nucleic Acids Research. PMID 33406227 DOI: 10.1093/nar/gkaa1249   
2021 Cheng M, Qiu D, Tamon L, Ištvánková E, Víšková P, Amrane S, Guédin A, Chen J, Lacroix L, Ju H, Trantírek L, Sahakyan AB, Zhou J, Mergny JL. Thermal and pH stabilities of i-DNA: confronting in vitro experiments with models and in-cell NMR data. Angewandte Chemie (International Ed. in English). PMID 33605024 DOI: 10.1002/anie.202016801   
2021 Vilar R, Kench T, Summers PA, Kuimova MK, Lewis JEM. Rotaxanes as cages to control DNA binding, cytotoxicity and cellular uptake of a small molecule. Angewandte Chemie (International Ed. in English). PMID 33577711 DOI: 10.1002/anie.202100151   
2021 McKie SJ, Neuman KC, Maxwell A. DNA topoisomerases: Advances in understanding of cellular roles and multi-protein complexes via structure-function analysis. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. e2000286. PMID 33480441 DOI: 10.1002/bies.202000286   
2021 Knyphausen P, Lindenburg L, Hollfelder F. Error-Free Synthetic DNA by Molecular Dictation. Trends in Biotechnology. PMID 33653603 DOI: 10.1016/j.tibtech.2021.02.001   
2021 Lindman B, Medronho B, Alves L, Norgren M, Nordenskiöld L. Hydrophobic interactions control the self-assembly of DNA and cellulose. Quarterly Reviews of Biophysics. 54: e3. PMID 33541444 DOI: 10.1017/S0033583521000019   
2021 Xu J, Wang X, Zhang X, Yao L, Qin P, Lu Y, Chen Y, Zhang Y, Yan Y, Chen W. Periodically programmed building and collapse of DNA networks enables an ultrahigh signal amplification effect for ultrasensitive nucleic acids analysis. Analytica Chimica Acta. 1150: 338221. PMID 33583542 DOI: 10.1016/j.aca.2021.338221   
2021 Kitchner E, Chavez J, Ceresa L, Bus MM, Budowle B, Gryczynski Z. A novel approach for visualization and localization of small amounts of DNA on swabs to improve DNA collection and recovery process. The Analyst. PMID 33393553 DOI: 10.1039/d0an02043e   
2021 Matange K, Tuck JM, Keung AJ. DNA stability: a central design consideration for DNA data storage systems. Nature Communications. 12: 1358. PMID 33649304 DOI: 10.1038/s41467-021-21587-5   
2021 Sharma RK, Agrawal I, Dai L, Doyle P, Garaj S. DNA Knot Malleability in Single-Digit Nanopores. Nano Letters. PMID 33661654 DOI: 10.1021/acs.nanolett.0c05142   
2021 Wang R, Li J, Niu DB, Xu FY, Zeng XA. Protective effect of baicalein on DNA oxidative damage and its binding mechanism with DNA: An in vitro and molecular docking study. Spectrochimica Acta. Part a, Molecular and Biomolecular Spectroscopy. 253: 119605. PMID 33667888 DOI: 10.1016/j.saa.2021.119605   
2021 Amoroso G, Sapelkin A, Ye Q, Araullo-Peters V, Cecconello A, Fernandez G, Palma M. DNA-driven dynamic assembly of MoS nanosheets. Faraday Discussions. PMID 33404023 DOI: 10.1039/c9fd00118b   
2021 Kim SH, Kim H, Jeong H, Yoon TY. Encoding Multiple Virtual Signals in DNA Barcodes with Single-Molecule FRET. Nano Letters. PMID 33586985 DOI: 10.1021/acs.nanolett.0c04502   
2021 Ji Z, Ji Y, Ding R, Lin L, Li B, Zhang X. DNA-templated silver nanoclusters as an efficient catalyst for reduction of nitrobenzene derivatives: a systematic study. Nanotechnology. PMID 33545692 DOI: 10.1088/1361-6528/abe3b4   
2021 Laskar P, Somani S, Mullin M, Tate RJ, Warzecha M, Bowering D, Keating P, Irving C, Leung HY, Dufès C. Octadecyl chain-bearing PEGylated poly(propyleneimine)-based dendrimersomes: physicochemical studies, redox-responsiveness, DNA condensation, cytotoxicity and gene delivery to cancer cells. Biomaterials Science. PMID 33404026 DOI: 10.1039/d0bm01441a   
2021 Kato K, Ichimaru Y, Okuno Y, Yamaguchi Y, Jin W, Fujita M, Otsuka M, Imai M, Kurosaki H. DNA-cleavage activity of the iron(II) complex with optically active ligands, meta- and para-xylyl-linked N',N'-dipyridylmethyl-cyclohexane-1,2-diamine. Bioorganic & Medicinal Chemistry Letters. 127834. PMID 33540045 DOI: 10.1016/j.bmcl.2021.127834   
2021 Felipe C, Shin J, Kolomeisky AB. DNA Looping and DNA Conformational Fluctuations Can Accelerate Protein Target Search. The Journal of Physical Chemistry. B. PMID 33570939 DOI: 10.1021/acs.jpcb.0c09599   
2021 Kolarič A, Germe T, Hrast M, Stevenson CEM, Lawson DM, Burton NP, Vörös J, Maxwell A, Minovski N, Anderluh M. Potent DNA gyrase inhibitors bind asymmetrically to their target using symmetrical bifurcated halogen bonds. Nature Communications. 12: 150. PMID 33420011 DOI: 10.1038/s41467-020-20405-8   
2021 Hnízda A, Tesina P, Nguyen TB, Kukačka Z, Kater L, Chaplin A, Beckmann R, Ascher DB, Novák P, Blundell TL. SAP domain forms a flexible part of DNA aperture in Ku70/80. The Febs Journal. PMID 33511782 DOI: 10.1111/febs.15732   
2021 Anderson AJ, Grey E, Bongiardina NJ, Bowman CN, Bryant SJ. Synthesis and Characterization of Click Nucleic Acid Conjugated Polymeric Microparticles for DNA Delivery Applications. Biomacromolecules. PMID 33621070 DOI: 10.1021/acs.biomac.0c01563   
2021 Ishida H, Kono H. Torsional stress can regulate the unwrapping of two outer half superhelical turns of nucleosomal DNA. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33558240 DOI: 10.1073/pnas.2020452118   
2021 He L, Zhang J, He C, Zhao B, Chen W, Patil SR. Effect of cytosine hydroxymethylation on DNA charge transport. Molecular and Cellular Biochemistry. PMID 33405086 DOI: 10.1007/s11010-020-03957-7   
2021 Wang Y, Wu J, Wu J, Wang Y. DNA Polymerase II Supports the Replicative Bypass of -Alkyl-2'-deoxyguanosine Lesions in Cells. Chemical Research in Toxicology. PMID 33417436 DOI: 10.1021/acs.chemrestox.0c00478   
2021 Fu Y, Wang F, Sheng H, Hu F, Wang Z, Xu M, Bian Y, Jiang X, Tiedje JM. Removal of extracellular antibiotic resistance genes using magnetic biochar/quaternary phosphonium salt in aquatic environments: A mechanistic study. Journal of Hazardous Materials. 411: 125048. PMID 33429312 DOI: 10.1016/j.jhazmat.2021.125048   
2021 Farag N, Mattossovich R, Merlo R, Nierzwicki Ł, Palermo G, Porchetta A, Perugino G, Ricci F. Folding-upon-repair DNA nanoswitches for monitoring DNA repair enzymes activity. Angewandte Chemie (International Ed. in English). PMID 33415794 DOI: 10.1002/anie.202016223   
2021 Pathira Kankanamge LS, Perera HM, Griffin WC. Genome Repair Takes a Spotlight during the ACS TOXI Meeting. Chemical Research in Toxicology. PMID 33508200 DOI: 10.1021/acs.chemrestox.0c00438   
2021 Weinhold E, Chakraborty B. DNA modification and visualization on an origami-based enzyme nano-factory. Nanoscale. PMID 33471009 DOI: 10.1039/d0nr07618j   
2021 Zhou Z, Cheng SH, Ding SC, Heung MMS, Xie T, Cheng THT, Lam WKJ, Peng W, Teoh JYC, Chiu PKF, Ng CF, Jiang P, Chan KCA, Chiu RWK, Lo YMD. Jagged Ends of Urinary Cell-Free DNA: Characterization and Feasibility Assessment in Bladder Cancer Detection. Clinical Chemistry. PMID 33604652 DOI: 10.1093/clinchem/hvaa325   
2021 Zhao Y, Zhang H, Wang Y, Zhao Y, Li Y, Han L, Lu L. A low-background fluorescent aptasensor for acetamiprid detection based on DNA three-way junction-formed G-quadruplexes and graphene oxide. Analytical and Bioanalytical Chemistry. PMID 33608750 DOI: 10.1007/s00216-020-03141-2   
2021 Vaidyanathan S, Weerakoon-Ratnayake KM, Uba FI, Hu B, Kaufman D, Choi J, Park S, Soper SA. Thermoplastic nanofluidic devices for identifying abasic sites in single DNA molecules. Lab On a Chip. PMID 33651049 DOI: 10.1039/d0lc01038c