Sudip Roy - Related publications

Physical Chemistry CSIR-National Chemical Laboratory, Pune, India 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Hazra R, Roy D. Distinctive Weak Interactions Underlie Diverse Nucleation and Small-Angle Scattering Behavior of Aqueous Cholesterol, Cholesteryl Hemisuccinate, and Glycocholic Acid. The Journal of Physical Chemistry. B. PMID 33417461 DOI: 10.1021/acs.jpcb.0c08931   
2021 Valentine ML, Waterland MK, Fathizadeh A, Elber R, Baiz CR. Interfacial Dynamics in Lipid Membranes: The Effects of Headgroup Structures. The Journal of Physical Chemistry. B. 125: 1343-1350. PMID 33507760 DOI: 10.1021/acs.jpcb.0c08755   
2021 Kundu S, Malik S, Ghosh M, Nandi S, Pyne A, Debnath A, Sarkar N. A Comparative Study on DMSO-Induced Modulation of the Structural and Dynamical Properties of Model Bilayer Membranes. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 33529530 DOI: 10.1021/acs.langmuir.0c03037   
2021 Mersch K, Ozturk TN, Park K, Lim HH, Robertson JL. Altering CLC stoichiometry by reducing non-polar side-chains at the dimerization interface. Journal of Molecular Biology. 166886. PMID 33617898 DOI: 10.1016/j.jmb.2021.166886   
2021 Liao X, Purohit PK. Kinetics of self-assembly of inclusions due to lipid membrane thickness interactions. Soft Matter. PMID 33511382 DOI: 10.1039/d0sm01752c   
2021 Sivaramakrishna D, Choudhury SK, Kumar CS, Swamy MJ. Structure, thermotropic phase behavior and membrane interaction of N-acyl-β-alaninols. Homologs of stress-combating N-acylethanolamines. Chemistry and Physics of Lipids. 105056. PMID 33631126 DOI: 10.1016/j.chemphyslip.2021.105056   
2021 Chen P, Vorobyov I, Roux B, Allen TW. Molecular Dynamics Simulations Based on Polarizable Models Show that Ion Permeation Interconverts between Different Mechanisms as a Function of Membrane Thickness. The Journal of Physical Chemistry. B. PMID 33493394 DOI: 10.1021/acs.jpcb.0c08613   
2021 Chakraborty A, Kobzev E, Chan J, de Zoysa GH, Sarojini V, Piggot TJ, Allison JR. Molecular Dynamics Simulation of the Interaction of Two Linear Battacin Analogs with Model Gram-Positive and Gram-Negative Bacterial Cell Membranes. Acs Omega. 6: 388-400. PMID 33458490 DOI: 10.1021/acsomega.0c04752   
2021 Ausili A, Rodríguez-González I, Torrecillas A, Teruel JA, Gómez-Fernández JC. Diethylstilbestrol Modifies the Structure of Model Membranes and Is Localized Close to the First Carbons of the Fatty Acyl Chains. Biomolecules. 11. PMID 33557377 DOI: 10.3390/biom11020220   
2021 Anton N, Pierrat P, Brou GA, Gbassi GK, Omran Z, Lebeau L, Vandamme TF, Bouriat P. The pH-Induced Specific Area Changes of Unsaturated Lipids Deposited onto a Bubble Interface. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 33577340 DOI: 10.1021/acs.langmuir.0c03046   
2021 Wu D, Zhao R, Chen Y, Wang Y, Li J, Fan Y. Molecular insights into MXene destructing the cell membrane as a "nano thermal blade". Physical Chemistry Chemical Physics : Pccp. PMID 33502424 DOI: 10.1039/d0cp05928e   
2021 Antila HS, M Ferreira T, Ollila OHS, Miettinen MS. Using Open Data to Rapidly Benchmark Biomolecular Simulations: Phospholipid Conformational Dynamics. Journal of Chemical Information and Modeling. PMID 33496579 DOI: 10.1021/acs.jcim.0c01299   
2021 Gao Y, Lee J, Smith IPS, Lee H, Kim S, Qi Y, Klauda JB, Widmalm G, Khalid S, Im W. CHARMM-GUI Supports Hydrogen Mass Repartitioning and Different Protonation States of Phosphates in Lipopolysaccharides. Journal of Chemical Information and Modeling. PMID 33442985 DOI: 10.1021/acs.jcim.0c01360   
2021 Jarin Z, Newhouse J, Voth GA. Coarse-Grained Force Fields from the Perspective of Statistical Mechanics: Better Understanding of the Origins of a MARTINI Hangover. Journal of Chemical Theory and Computation. 17: 1170-1180. PMID 33475352 DOI: 10.1021/acs.jctc.0c00638   
2021 Yu Y, Krämer A, Venable RM, Simmonett AC, MacKerell AD, Klauda JB, Pastor RW, Brooks BR. Semi-automated Optimization of the CHARMM36 Lipid Force Field to Include Explicit Treatment of Long-Range Dispersion. Journal of Chemical Theory and Computation. PMID 33620214 DOI: 10.1021/acs.jctc.0c01326   
2021 Elkins MR, Bandara A, Pantelopulos GA, Straub JE, Hong M. Direct Observation of Cholesterol Dimers and Tetramers in Lipid Bilayers. The Journal of Physical Chemistry. B. PMID 33560844 DOI: 10.1021/acs.jpcb.0c10631   
2021 Shen S, Wang Y, Dong J, Zhang R, Parikh A, Chen JG, Hu D. Mimicking Thylakoid Membrane with Chlorophyll/TiO/Lipid Co-Assembly for Light-Harvesting and Oxygen Releasing. Acs Applied Materials & Interfaces. PMID 33634696 DOI: 10.1021/acsami.0c21662   
2021 Luna E, Kim S, Gao Y, Widmalm G, Im W. Influences of Lipid A Types on LPS Bilayer Properties. The Journal of Physical Chemistry. B. PMID 33600188 DOI: 10.1021/acs.jpcb.0c09144   
2021 Pluhackova K, Horner A. Native-like membrane models of E. coli polar lipid extract shed light on the importance of lipid composition complexity. Bmc Biology. 19: 4. PMID 33441107 DOI: 10.1186/s12915-020-00936-8   
2021 Czekalska MA, Jacobs AMJ, Toprakcioglu Z, Kong L, Baumann KN, Gang H, Zubaite G, Ye R, Mu B, Levin A, Huck WTS, Knowles TPJ. One-Step Generation of Multisomes from Lipid-Stabilized Double Emulsions. Acs Applied Materials & Interfaces. PMID 33522221 DOI: 10.1021/acsami.0c16019   
2021 Czekalska MA, Jacobs AMJ, Toprakcioglu Z, Kong L, Baumann KN, Gang H, Zubaite G, Ye R, Mu B, Levin A, Huck WTS, Knowles TPJ. One-Step Generation of Multisomes from Lipid-Stabilized Double Emulsions. Acs Applied Materials & Interfaces. PMID 33522221 DOI: 10.1021/acsami.0c16019   
2021 Liu Y, Zou G, Gao H. Domain Aggregation and Associated Pore Growth in Lipid Membranes. Acs Nano. PMID 33405893 DOI: 10.1021/acsnano.0c06057   
2021 Sepehri A, Nepal B, Lazaridis T. Lipid interactions of an actinoporin pore-forming oligomer. Biophysical Journal. PMID 33617834 DOI: 10.1016/j.bpj.2021.02.015   
2021 Maiti A, Daschakraborty S. Effect of TMAO on the Structure and Phase Transition of Lipid Membranes: Potential Role of TMAO in Stabilizing Cell Membranes under Osmotic Stress. The Journal of Physical Chemistry. B. 125: 1167-1180. PMID 33481606 DOI: 10.1021/acs.jpcb.0c08335   
2021 Zare M, Kitt JP, Wen X, Heider EC, Harris JM. Hybrid-Lipid Bilayers Induce -Alkyl-Chain Order in Reversed-Phase Chromatographic Surfaces, Impacting their Shape Selectivity for Aromatic Hydrocarbon Partitioning. Analytical Chemistry. PMID 33586951 DOI: 10.1021/acs.analchem.0c05467   
2021 Hossein A, Deserno M. Stiffening transition in asymmetric lipid bilayers: The role of highly ordered domains and the effect of temperature and size. The Journal of Chemical Physics. 154: 014704. PMID 33412863 DOI: 10.1063/5.0028255   
2021 Roppongi T, Mizuno N, Miyagawa Y, Kobayashi T, Nakagawa K, Adachi S. Solubility and mass transfer coefficient of oxygen through gas- and water-lipid interfaces. Journal of Food Science. PMID 33580513 DOI: 10.1111/1750-3841.15641   
2021 Manna M, Murarka RK. Polyunsaturated Fatty Acid Modulates Membrane-Bound Monomeric α-Synuclein by Modulating Membrane Microenvironment through Preferential Interactions. Acs Chemical Neuroscience. PMID 33538574 DOI: 10.1021/acschemneuro.0c00694   
2021 Havlíková M, Szabová J, Mravcová L, Venerová T, Chang CH, Pekař M, Jugl A, Mravec F. Cholesterol Effect on Membrane Properties of Cationic Ion Pair Amphiphile Vesicles at Different Temperatures. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 33545006 DOI: 10.1021/acs.langmuir.0c03504   
2021 Saini R, Globisch C, Franke L, Peter C, Debnath A. Interactions Determining the Structural Integrity of the Trimer of Plant Light Harvesting Complex in Lipid Membranes. The Journal of Membrane Biology. PMID 33427943 DOI: 10.1007/s00232-020-00162-x   
2021 Nunes LO, Munhoz VHO, Sousa AA, de Souza KR, Santos TL, Bemquerer MP, Ferreira DEC, de Magalhães MTQ, Resende JM, Alcântara AFC, Aisenbrey C, Veloso DP, Bechinger B, Verly RM. High-resolution structural profile of hylaseptin-4: Aggregation, membrane topology and pH dependence of overall membrane binding process. Biochimica Et Biophysica Acta. Biomembranes. 183581. PMID 33556358 DOI: 10.1016/j.bbamem.2021.183581   
2021 Canepa E, Salassi S, Simonelli F, Ferrando R, Rolandi R, Lambruschini C, Canepa F, Dante S, Relini A, Rossi G. Non-disruptive uptake of anionic and cationic gold nanoparticles in neutral zwitterionic membranes. Scientific Reports. 11: 1256. PMID 33441958 DOI: 10.1038/s41598-020-80953-3   
2021 Tsuchida N, Takagi T, Takahashi H, Yoshihara T, Tobita S, Sonoyama M. Membrane properties of amacrocyclic tetraether bisphosphatidylcholine lipid: Effect of a single membrane-spanning polymethylene cross-linkage between two head groups of ditetradecylphosphatidylcholine membrane. Biochimica Et Biophysica Acta. Biomembranes. 183569. PMID 33549531 DOI: 10.1016/j.bbamem.2021.183569   
2021 Hicks A, Escobar CA, Cross TA, Zhou HX. Fuzzy Association of an Intrinsically Disordered Protein with Acidic Membranes. Jacs Au. 1: 66-78. PMID 33554215 DOI: 10.1021/jacsau.0c00039   
2021 Rasouli A, Jamali Y, Tajkhorshid E, Bavi O, Pishkenari HN. Mechanical properties of ester- and ether-DPhPC bilayers: A molecular dynamics study. Journal of the Mechanical Behavior of Biomedical Materials. 117: 104386. PMID 33588213 DOI: 10.1016/j.jmbbm.2021.104386   
2021 Yesylevskyy S, Khandelia H. EnCurv: Simple Technique of Maintaining Global Membrane Curvature in Molecular Dynamics Simulations. Journal of Chemical Theory and Computation. 17: 1181-1193. PMID 33513017 DOI: 10.1021/acs.jctc.0c00800   
2021 Chaudhury A, Debnath K, Bu W, Jana NR, Basu JK. Penetration and preferential binding of charged nanoparticles to mixed lipid monolayers: interplay of lipid packing and charge density. Soft Matter. PMID 33427839 DOI: 10.1039/d0sm01945c   
2021 Ma X, Zhu X, Huang C, Li Z, Fan J. Molecular mechanisms underlying the role of the puckered surface in the biocompatibility of black phosphorus. Nanoscale. PMID 33565554 DOI: 10.1039/d0nr08480h   
2021 Wang Q, Oshita K, Takaoka M. Effective lipid extraction from undewatered microalgae liquid using subcritical dimethyl ether. Biotechnology For Biofuels. 14: 17. PMID 33422122 DOI: 10.1186/s13068-020-01871-0   
2021 Sistemich L, Stanchev LD, Kutsch M, Roux A, Günther Pomorski T, Herrmann C. Structural requirements for membrane binding of human guanylate-binding protein 1. The Febs Journal. PMID 33405388 DOI: 10.1111/febs.15703   
2021 Beaven AH, Arnarez C, Lyman E, Bennett WFD, Sodt AJ. Curvature Energetics Determined by Alchemical Simulation on Four Topologically Distinct Lipid Phases. The Journal of Physical Chemistry. B. PMID 33570958 DOI: 10.1021/acs.jpcb.0c09458   
2021 Banerjee S, Lyubchenko YL. Topographically smooth and stable supported lipid bilayer for high-resolution AFM studies. Methods (San Diego, Calif.). PMID 33609699 DOI: 10.1016/j.ymeth.2021.02.010   
2021 De Mel JU, Gupta S, Willner L, Allgaier J, Stingaciu LR, Bleuel M, Schneider GJ. Manipulating Phospholipid Vesicles at the Nanoscale: A Transformation from Unilamellar to Multilamellar by an -Alkyl-poly(ethylene oxide). Langmuir : the Acs Journal of Surfaces and Colloids. PMID 33570419 DOI: 10.1021/acs.langmuir.0c03302   
2021 Chen CH, Starr CG, Guha S, Wimley WC, Ulmschneider MB, Ulmschneider JP. Tuning of a Membrane-Perforating Antimicrobial Peptide to Selectively Target Membranes of Different Lipid Composition. The Journal of Membrane Biology. PMID 33564914 DOI: 10.1007/s00232-021-00174-1   
2021 Smirnova YG, Müller M. How does curvature affect the free-energy barrier of stalk formation? Small vesicles vs apposing, planar membranes. European Biophysics Journal : Ebj. PMID 33547940 DOI: 10.1007/s00249-020-01494-1   
2021 Bryant SJ, Garcia A, Clarke RJ, Warr GG. Selective ion transport across a lipid bilayer in a protic ionic liquid. Soft Matter. PMID 33533359 DOI: 10.1039/d0sm02225j   
2021 Gao M, Du N, Yao Z, Li Y, Chen N, Hou W. Vesicle formation of single-chain amphiphilic 4-dodecylbenzene sulfonic acid in water and micelle-to-vesicle transition induced by wet-dry cycles. Soft Matter. PMID 33503106 DOI: 10.1039/d0sm02229b   
2021 Rani G, Kuroda K, Vemparala S. Towards designing globular antimicrobial peptide mimics: role of polar functional groups in biomimetic ternary antimicrobial polymers. Soft Matter. PMID 33439212 DOI: 10.1039/d0sm01896a   
2021 Banerjee S, Hashemi M, Zagorski K, Lyubchenko YL. Cholesterol in Membranes Facilitates Aggregation of Amyloid β Protein at Physiologically Relevant Concentrations. Acs Chemical Neuroscience. PMID 33492944 DOI: 10.1021/acschemneuro.0c00688   
2021 Ma L, Luo Y, Ma YH, Lu X. Interaction between Antimicrobial Peptide CM15 and a Model Cell Membrane Affected by CM15 Terminal Amidation and the Membrane Phase State. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 33464910 DOI: 10.1021/acs.langmuir.0c03498