Venkat Gopalan - Publications

Chemistry and Biochemistry Ohio State University, Columbus, Columbus, OH 
Structure and mechanism of action of ribonuclease P, a catalytic ribonucleoprotein (RNP) complex

68 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Daniels CJ, Lai LB, Chen TH, Gopalan V. Both kinds of RNase P in all domains of life: Surprises galore. Rna (New York, N.Y.). PMID 30578286 DOI: 10.1261/rna.068379.118  0.6
2017 Gopalan V, Jarrous N, Krasilnikov AS. Chance and necessity in the evolution of RNase P. Rna (New York, N.Y.). PMID 28971852 DOI: 10.1261/rna.063107.117  0.4
2017 Lai LB, Tanimoto A, Lai SM, Chen WY, Marathe IA, Westhof E, Wysocki VH, Gopalan V. A novel double kink-turn module in euryarchaeal RNase P RNAs. Nucleic Acids Research. PMID 28525600 DOI: 10.1093/nar/gkx388  0.6
2016 Mao G, Chen TH, Srivastava AS, Kosek D, Biswas PK, Gopalan V, Kirsebom LA. Cleavage of Model Substrates by Arabidopsis thaliana PRORP1 Reveals New Insights into Its Substrate Requirements. Plos One. 11: e0160246. PMID 27494328 DOI: 10.1371/journal.pone.0160246  0.72
2016 Sabag-Daigle A, Blunk HM, Sengupta A, Wu J, Bogard AJ, Ali MM, Stahl C, Wysocki VH, Gopalan V, Behrman EJ, Ahmer BM. A metabolic intermediate of the fructose-asparagine utilization pathway inhibits growth of a Salmonella fraB mutant. Scientific Reports. 6: 28117. PMID 27403719 DOI: 10.1038/srep28117  0.72
2016 Wang Y, Qu J, Ji S, Wallace AJ, Wu J, Li Y, Gopalan V, Ding B. A Land Plant-specific Transcription Factor Directly Enhances Transcription of a Pathogenic Noncoding RNA Template by DNA-dependent RNA Polymerase II. The Plant Cell. PMID 27113774 DOI: 10.1105/tpc.16.00100  0.72
2015 Gopalan V, McClain WH. RNA: yesterday, today and tomorrow. Rna (New York, N.Y.). 21: 541-3. PMID 25780129 DOI: 10.1261/rna.049759.115  0.72
2015 Ujor V, Agu CV, Gopalan V, Ezeji TC. Allopurinol-mediated lignocellulose-derived microbial inhibitor tolerance by Clostridium beijerinckii during acetone-butanol-ethanol (ABE) fermentation. Applied Microbiology and Biotechnology. 99: 3729-40. PMID 25690312 DOI: 10.1007/s00253-015-6450-3  0.72
2015 Manivannan SN, Lai LB, Gopalan V, Simcox A. Transcriptional control of an essential ribozyme in Drosophila reveals an ancient evolutionary divide in animals. Plos Genetics. 11: e1004893. PMID 25569672 DOI: 10.1371/journal.pgen.1004893  0.72
2015 Thirunavukkarasu N, Jahnes B, Broadstock A, Govinda Rajulu MB, Murali TS, Gopalan V, Suryanarayanan TS. Screening marine-derived endophytic fungi for xylan-degrading enzymes Current Science. 109: 112-120.  0.72
2015 Glew RH, Challa AK, Gopalan V. Who is qualified to instruct scientific manuscript writing? Current Science. 108: 1032.  0.72
2014 Lai SM, Lai LB, Foster MP, Gopalan V. The L7Ae protein binds to two kink-turns in the Pyrococcus furiosus RNase P RNA. Nucleic Acids Research. 42: 13328-38. PMID 25361963 DOI: 10.1093/nar/gku994  0.6
2014 Ma X, Lai LB, Lai SM, Tanimoto A, Foster MP, Wysocki VH, Gopalan V. Uncovering the stoichiometry of Pyrococcus furiosus RNase P, a multi-subunit catalytic ribonucleoprotein complex, by surface-induced dissociation and ion mobility mass spectrometry. Angewandte Chemie (International Ed. in English). 53: 11483-7. PMID 25195671 DOI: 10.1002/anie.201405362  0.72
2014 Ujor V, Agu CV, Gopalan V, Ezeji TC. Glycerol supplementation of the growth medium enhances in situ detoxification of furfural by Clostridium beijerinckii during butanol fermentation. Applied Microbiology and Biotechnology. 98: 6511-21. PMID 24839212 DOI: 10.1007/s00253-014-5802-8  0.72
2014 VanLeeuwen BK, Gopalan V, Litvin DB. Double antisymmetry and the rotation-reversal space groups. Acta Crystallographica. Section a, Foundations and Advances. 70: 24-38. PMID 24419168 DOI: 10.1107/S2053273313023176  0.01
2014 Rajulu MBG, Lai LB, Murali TS, Gopalan V, Suryanarayanan TS. Several fungi from fire-prone forests of southern India can utilize furaldehydes Mycological Progress. 13: 1049-1056. DOI: 10.1007/s11557-014-0992-0  0.72
2014 Glew RH, Challa AK, Gopalan V. Training in scientific manuscript writing Current Science. 107: 1386-1392.  0.72
2014 Suryanarayanan TS, Gopalan V. Crowdsourcing to create national repositories of microbial genetic resources: Fungi as a model Current Science. 106: 1196-1200.  0.72
2013 Han B, Ujor V, Lai LB, Gopalan V, Ezeji TC. Use of proteomic analysis to elucidate the role of calcium in acetone-butanol-ethanol fermentation by Clostridium beijerinckii NCIMB 8052. Applied and Environmental Microbiology. 79: 282-93. PMID 23104411 DOI: 10.1128/AEM.02969-12  0.72
2012 Susanti D, Johnson EF, Rodriguez JR, Anderson I, Perevalova AA, Kyrpides N, Lucas S, Han J, Lapidus A, Cheng JF, Goodwin L, Pitluck S, Mavrommatis K, Peters L, Land ML, ... ... Gopalan V, et al. Complete genome sequence of Desulfurococcus fermentans, a hyperthermophilic cellulolytic crenarchaeon isolated from a freshwater hot spring in Kamchatka, Russia. Journal of Bacteriology. 194: 5703-4. PMID 23012283 DOI: 10.1128/JB.01314-12  0.72
2012 Chen WY, Singh D, Lai LB, Stiffler MA, Lai HD, Foster MP, Gopalan V. Fidelity of tRNA 5'-maturation: a possible basis for the functional dependence of archaeal and eukaryal RNase P on multiple protein cofactors. Nucleic Acids Research. 40: 4666-80. PMID 22298511 DOI: 10.1093/nar/gks013  0.72
2012 Xu Y, Oruganti SV, Gopalan V, Foster MP. Thermodynamics of coupled folding in the interaction of archaeal RNase P proteins RPP21 and RPP29. Biochemistry. 51: 926-35. PMID 22243443 DOI: 10.1021/bi201674d  0.72
2012 Suryanarayanan TS, Thirunavukkarasu N, Govindarajulu MB, Gopalan V. Fungal endophytes: An untapped source of biocatalysts Fungal Diversity. 54: 19-30. DOI: 10.1007/s13225-012-0168-7  0.72
2011 Crowe BL, Bohlen CJ, Wilson RC, Gopalan V, Foster MP. Assembly of the complex between archaeal RNase P proteins RPP30 and Pop5. Archaea (Vancouver, B.C.). 2011: 891531. PMID 22162665 DOI: 10.1155/2011/891531  0.72
2011 Lai LB, Bernal-Bayard P, Mohannath G, Lai SM, Gopalan V, Vioque A. A functional RNase P protein subunit of bacterial origin in some eukaryotes. Molecular Genetics and Genomics : Mgg. 286: 359-69. PMID 21987179 DOI: 10.1007/s00438-011-0651-y  0.72
2011 Chen WY, Xu Y, Cho IM, Oruganti SV, Foster MP, Gopalan V. Cooperative RNP assembly: complementary rescue of structural defects by protein and RNA subunits of archaeal RNase P. Journal of Molecular Biology. 411: 368-83. PMID 21683084 DOI: 10.1016/j.jmb.2011.05.012  0.72
2011 Han B, Gopalan V, Ezeji TC. Acetone production in solventogenic Clostridium species: new insights from non-enzymatic decarboxylation of acetoacetate. Applied Microbiology and Biotechnology. 91: 565-76. PMID 21533580 DOI: 10.1007/s00253-011-3276-5  0.72
2011 Cho IM, Kazakov SA, Gopalan V. Evidence for recycling of external guide sequences during cleavage of bipartite substrates in vitro by reconstituted archaeal RNase P. Journal of Molecular Biology. 405: 1121-7. PMID 21144851 DOI: 10.1016/j.jmb.2010.11.056  0.72
2011 Sinapah S, Wu S, Chen Y, Pettersson BM, Gopalan V, Kirsebom LA. Cleavage of model substrates by archaeal RNase P: role of protein cofactors in cleavage-site selection. Nucleic Acids Research. 39: 1105-16. PMID 20935047 DOI: 10.1093/nar/gkq732  0.72
2011 Li H, Edwards PS, Zhang Z, Zhang B, Xu Y, Gopalan V, Liu Z. Characterization of the second-harmonic response of second-order nonlinear probes Journal of the Optical Society of America B: Optical Physics. 28: 2844-2847. DOI: 10.1364/JOSAB.28.002844  0.32
2011 Yang C, Shi K, Li H, Xu Q, Gopalan V, Liu Z. Non-axial-scanning second harmonic microscopy Optics Infobase Conference Papers 0.32
2010 Yang C, Shi K, Li H, Xu Q, Gopalan V, Liu Z. Chromatic second harmonic imaging. Optics Express. 18: 23837-43. PMID 21164728 DOI: 10.1364/OE.18.023837  0.32
2010 Lai LB, Chan PP, Cozen AE, Bernick DL, Brown JW, Gopalan V, Lowe TM. Discovery of a minimal form of RNase P in Pyrobaculum. Proceedings of the National Academy of Sciences of the United States of America. 107: 22493-8. PMID 21135215 DOI: 10.1073/pnas.1013969107  0.72
2010 Jarrous N, Gopalan V. Archaeal/eukaryal RNase P: subunits, functions and RNA diversification. Nucleic Acids Research. 38: 7885-94. PMID 20716516 DOI: 10.1093/nar/gkq701  0.72
2010 Chen WY, Pulukkunat DK, Cho IM, Tsai HY, Gopalan V. Dissecting functional cooperation among protein subunits in archaeal RNase P, a catalytic ribonucleoprotein complex. Nucleic Acids Research. 38: 8316-27. PMID 20705647 DOI: 10.1093/nar/gkq668  0.72
2010 Cho IM, Lai LB, Susanti D, Mukhopadhyay B, Gopalan V. Ribosomal protein L7Ae is a subunit of archaeal RNase P. Proceedings of the National Academy of Sciences of the United States of America. 107: 14573-8. PMID 20675586 DOI: 10.1073/pnas.1005556107  0.72
2010 McClain WH, Lai LB, Gopalan V. Trials, travails and triumphs: an account of RNA catalysis in RNase P. Journal of Molecular Biology. 397: 627-46. PMID 20100492 DOI: 10.1016/j.jmb.2010.01.038  0.72
2010 Lai LB, Vioque A, Kirsebom LA, Gopalan V. Unexpected diversity of RNase P, an ancient tRNA processing enzyme: challenges and prospects. Febs Letters. 584: 287-96. PMID 19931535 DOI: 10.1016/j.febslet.2009.11.048  0.72
2010 Lai LB, Cho IM, Chen WY, Gopalan V. Archaeal RNase P: A Mosaic of its bacterial and eukaryal relatives Protein Reviews. 10: 153-172. DOI: 10.1007/978-1-4419-1142-1-9  0.72
2009 Xu Y, Amero CD, Pulukkunat DK, Gopalan V, Foster MP. Solution structure of an archaeal RNase P binary protein complex: formation of the 30-kDa complex between Pyrococcus furiosus RPP21 and RPP29 is accompanied by coupled protein folding and highlights critical features for protein-protein and protein-RNA interactions. Journal of Molecular Biology. 393: 1043-55. PMID 19733182 DOI: 10.1016/j.jmb.2009.08.068  0.72
2008 Pulukkunat DK, Gopalan V. Studies on Methanocaldococcus jannaschii RNase P reveal insights into the roles of RNA and protein cofactors in RNase P catalysis. Nucleic Acids Research. 36: 4172-80. PMID 18558617 DOI: 10.1093/nar/gkn360  0.72
2008 Ramirez MO, Wisdom J, Li H, Aung YL, Stitt J, Messing GL, Dierolf V, Liu Z, Ikesue A, Byer RL, Gopalan V. Three-dimensional grain boundary spectroscopy in transparent high power ceramic laser materials. Optics Express. 16: 5965-73. PMID 18545297 DOI: 10.1364/OE.16.005965  0.32
2008 Kawamoto SA, Sudhahar CG, Hatfield CL, Sun J, Behrman EJ, Gopalan V. Studies on the mechanism of inhibition of bacterial ribonuclease P by aminoglycoside derivatives. Nucleic Acids Research. 36: 697-704. PMID 18084035 DOI: 10.1093/nar/gkm1088  0.72
2006 Tsai HY, Pulukkunat DK, Woznick WK, Gopalan V. Functional reconstitution and characterization of Pyrococcus furiosus RNase P. Proceedings of the National Academy of Sciences of the United States of America. 103: 16147-52. PMID 17053064 DOI: 10.1073/pnas.0608000103  0.72
2004 Rangarajan S, Raj ML, Hernandez JM, Grotewold E, Gopalan V. RNase P as a tool for disruption of gene expression in maize cells. The Biochemical Journal. 380: 611-6. PMID 15096096 DOI: 10.1042/BJ20040442  0.72
2003 Boomershine WP, McElroy CA, Tsai HY, Wilson RC, Gopalan V, Foster MP. Structure of Mth11/Mth Rpp29, an essential protein subunit of archaeal and eukaryotic RNase P. Proceedings of the National Academy of Sciences of the United States of America. 100: 15398-403. PMID 14673079 DOI: 10.1073/pnas.2535887100  0.72
2003 Eder PS, Hatfield C, Vioque A, Gopalan V. Bacterial RNase P as a potential target for novel anti-infectives. Current Opinion in Investigational Drugs (London, England : 2000). 4: 937-43. PMID 14508877  0.72
2003 Pulukkunat DK, Raj ML, Pattanayak D, Lai LB, Gopalan V. Exploring the potential of plant RNase P as a functional genomics tool. Methods in Molecular Biology (Clifton, N.J.). 236: 295-310. PMID 14501072 DOI: 10.1385/1-59259-413-1:295  0.72
2003 Tsai HY, Masquida B, Biswas R, Westhof E, Gopalan V. Molecular modeling of the three-dimensional structure of the bacterial RNase P holoenzyme. Journal of Molecular Biology. 325: 661-75. PMID 12507471  0.6
2002 Jovanovic M, Sanchez R, Altman S, Gopalan V. Elucidation of structure-function relationships in the protein subunit of bacterial RNase P using a genetic complementation approach. Nucleic Acids Research. 30: 5065-73. PMID 12466529 DOI: 10.1093/nar/gkf670  0.72
2002 Guerrier-Takada C, Eder PS, Gopalan V, Altman S. Purification and characterization of Rpp25, an RNA-binding protein subunit of human ribonuclease P. Rna (New York, N.Y.). 8: 290-5. PMID 12003489 DOI: 10.1017/S1355838202027954  0.72
2002 Tsai HY, Lai LB, Gopalan V. A Modified pBluescript-based vector for facile cloning and transcription of RNAs. Analytical Biochemistry. 303: 214-7. PMID 11950224 DOI: 10.1006/abio.2001.5567  0.6
2002 Eubank TD, Biswas R, Jovanovic M, Litovchick A, Lapidot A, Gopalan V. Inhibition of bacterial RNase P by aminoglycoside-arginine conjugates. Febs Letters. 511: 107-12. PMID 11821058 DOI: 10.1016/S0014-5793(01)03322-1  0.72
2002 Gopalan V, Vioque A, Altman S. RNase P: variations and uses. The Journal of Biological Chemistry. 277: 6759-62. PMID 11741968 DOI: 10.1074/jbc.R100067200  0.72
2001 Raj ML, Pulukkunat DK, Reckard JF, Thomas G, Gopalan V. Cleavage of bipartite substrates by rice and maize ribonuclease P. Application to degradation of target mRNAs in plants. Plant Physiology. 125: 1187-90. PMID 11244099 DOI: 10.1104/pp.125.3.1187  0.72
2000 Altman S, Gopalan V, Vioque A. Varieties of RNase P: a nomenclature problem? Rna (New York, N.Y.). 6: 1689-94. PMID 11142368 DOI: 10.1017/S1355838200001783  0.72
2000 Biswas R, Ledman DW, Fox RO, Altman S, Gopalan V. Mapping RNA-protein interactions in ribonuclease P from Escherichia coli using disulfide-linked EDTA-Fe. Journal of Molecular Biology. 296: 19-31. PMID 10656815 DOI: 10.1006/jmbi.1999.3443  0.72
1999 Gopalan V, Kühne H, Biswas R, Li H, Brudvig GW, Altman S. Mapping RNA-protein interactions in ribonuclease P from Escherichia coli using electron paramagnetic resonance spectroscopy. Biochemistry. 38: 1705-14. PMID 10026248 DOI: 10.1021/bi9807106  0.72
1997 Gopalan V, Baxevanis AD, Landsman D, Altman S. Analysis of the functional role of conserved residues in the protein subunit of ribonuclease P from Escherichia coli. Journal of Molecular Biology. 267: 818-29. PMID 9135114 DOI: 10.1006/jmbi.1997.0906  0.72
1997 Gopalan V, Golbik R, Schreiber G, Fersht AR, Altman S. Fluorescence properties of a tryptophan residue in an aromatic core of the protein subunit of ribonuclease P from Escherichia coli. Journal of Molecular Biology. 267: 765-9. PMID 9135109 DOI: 10.1006/jmbi.1997.0907  0.72
1992 Lai LB, Gopalan V, Glew RH. Continuous spectrophotometric assays for beta-glucosidases acting on the plant glucosides L-picein and prunasin. Analytical Biochemistry. 200: 365-9. PMID 1632501 DOI: 10.1016/0003-2697(92)90480-U  0.84
1992 Gopalan V, Pastuszyn A, Galey WR, Glew RH. Exolytic hydrolysis of toxic plant glucosides by guinea pig liver cytosolic beta-glucosidase. The Journal of Biological Chemistry. 267: 14027-32. PMID 1629201  0.84
1992 Gopalan V, Vander Jagt DJ, Libell DP, Glew RH. Transglucosylation as a probe of the mechanism of action of mammalian cytosolic beta-glucosidase. The Journal of Biological Chemistry. 267: 9629-38. PMID 1577800  0.84
1991 Glew RH, Gopalan V, Hubbell CA, Devraj RV, Lawson RA, Diven WF, Mannock DA. 2,3-di-O-tetradecyl-1-O-(beta-D-glucopyranosyl)-sn-glycerol is a substrate for human glucocerebrosidase. The Biochemical Journal. 274: 557-63. PMID 1900989  0.84
1991 Glew RH, Gopalan V, Hubbell CA, Beutler E, Geil JD, Lee RE. A case of nonneurologic Gaucher's disease that biochemically resembles the neurologic types. Journal of Neuropathology and Experimental Neurology. 50: 108-17. PMID 1672707  0.84
1989 Butcher BA, Gopalan V, Lee RE, Richards TC, Waggoner AS, Glew RH. Use of 4-heptylumbelliferyl-beta-D-glucoside to identify Gaucher's disease heterozygotes. Clinica Chimica Acta; International Journal of Clinical Chemistry. 184: 235-42. PMID 2515009 DOI: 10.1016/0009-8981(89)90056-9  0.84
1989 Gopalan V, Daniels LB, Glew RH, Claeyssens M. Kinetic analysis of the interaction of alkyl glycosides with two human beta-glucosidases. The Biochemical Journal. 262: 541-8. PMID 2508630  0.84
1989 Gopalan V, Glew RH, Libell DP, DePetro JJ. The dual effects of alcohols on the kinetic properties of guinea pig liver cytosolic beta-glucosidase. The Journal of Biological Chemistry. 264: 15418-22. PMID 2504720  0.84
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