Chengqi Yi, Ph.D. - Publications

Affiliations: 
Peking University, Beijing, Beijing Shi, China 

55 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Zeng H, He B, Xia B, Dongsheng B, Lu X, Cai J, Chen L, Zhou A, Zhu C, Meng H, Gao Y, Guo H, He C, Dai Q, Yi C. Bisulfite-free, nano-scale analysis of 5-hydroxymethylcytosine at single base resolution. Journal of the American Chemical Society. PMID 30278133 DOI: 10.1021/jacs.8b08297  1
2018 Xiong X, Li X, Wang K, Yi C. Perspectives on topology of the human mA methylome at single nucleotide resolution. Rna (New York, N.Y.). PMID 30131401 DOI: 10.1261/rna.067694.118  0.36
2018 Xiong X, Li X, Yi C. N-methyladenosine methylome in messenger RNA and non-coding RNA. Current Opinion in Chemical Biology. 45: 179-186. PMID 30007213 DOI: 10.1016/j.cbpa.2018.06.017  0.36
2018 Shu X, Liu M, Lu Z, Zhu C, Meng H, Huang S, Zhang X, Yi C. Genome-wide mapping reveals that deoxyuridine is enriched in the human centromeric DNA. Nature Chemical Biology. PMID 29785056 DOI: 10.1038/s41589-018-0065-9  0.32
2017 Li X, Xiong X, Zhang M, Wang K, Chen Y, Zhou J, Mao Y, Lv J, Yi D, Chen XW, Wang C, Qian SB, Yi C. Base-Resolution Mapping Reveals Distinct m(1)A Methylome in Nuclear- and Mitochondrial-Encoded Transcripts. Molecular Cell. PMID 29107537 DOI: 10.1016/j.molcel.2017.10.019  0.36
2017 Zhang Y, Liu L, Guo S, Song J, Zhu C, Yue Z, Wei W, Yi C. Deciphering TAL effectors for 5-methylcytosine and 5-hydroxymethylcytosine recognition. Nature Communications. 8: 901. PMID 29026078 DOI: 10.1038/s41467-017-00860-6  0.32
2017 Xiong X, Yi C, Peng J. Epitranscriptomics: Toward A Better Understanding of RNA Modifications. Genomics, Proteomics & Bioinformatics. PMID 28533024 DOI: 10.1016/j.gpb.2017.03.003  0.32
2017 Zhu C, Gao Y, Guo H, Xia B, Song J, Wu X, Zeng H, Kee K, Tang F, Yi C. Single-Cell 5-Formylcytosine Landscapes of Mammalian Early Embryos and ESCs at Single-Base Resolution. Cell Stem Cell. PMID 28343982 DOI: 10.1016/j.stem.2017.02.013  0.32
2017 Song J, Yi C. Chemical Modifications to RNA: a New Layer of Gene Expression Regulation. Acs Chemical Biology. PMID 28051309 DOI: 10.1021/acschembio.6b00960  0.32
2016 Li X, Xiong X, Yi C. Epitranscriptome sequencing technologies: decoding RNA modifications. Nature Methods. 14: 23-31. PMID 28032622 DOI: 10.1038/nmeth.4110  0.36
2016 Shu X, Xiong X, Song J, He C, Yi C. Base-Resolution Analysis of Cisplatin-DNA Adducts at the Genome Scale. Angewandte Chemie (International Ed. in English). PMID 27736024 DOI: 10.1002/anie.201607380  1
2016 Zhu C, Lu L, Zhang J, Yue Z, Song J, Zong S, Liu M, Stovicek O, Gao YQ, Yi C. Tautomerization-dependent recognition and excision of oxidation damage in base-excision DNA repair. Proceedings of the National Academy of Sciences of the United States of America. PMID 27354518 DOI: 10.1073/pnas.1604591113  1
2016 Peng J, Xia B, Yi C. Single-base resolution analysis of DNA epigenome via high-throughput sequencing. Science China. Life Sciences. PMID 26825949 DOI: 10.1007/s11427-016-5013-x  1
2016 Huang Q, Dong L, Zhang L, Chen H, Yi C. Expression and clinical significance of CD146 in PR negative endometrial adenocarcinoma Medical Journal of Wuhan University. 37: 67-70. DOI: 10.14188/j.1671-8852.2016.01.015  0.4
2016 Gao Y, Tang T, Yi C, Zhang W, Li D, Xie W, Huang W, Ye N. Study of static and dynamic behavior of TiB2-B4C composite Materials and Design. 92: 814-822. DOI: 10.1016/j.matdes.2015.12.123  0.4
2015 Zhang Z, Pan Y, Fang Y, Zhang L, Chen J, Yi C. Tuning photoluminescence and surface properties of carbon nanodots for chemical sensing. Nanoscale. 8: 500-7. PMID 26676688 DOI: 10.1039/c5nr06534h  0.4
2015 Li ZJ, Wu Q, Yi CJ. Clinical efficacy of istradefylline versus rTMS on Parkinson's disease in a randomized clinical trial. Current Medical Research and Opinion. 1-4. PMID 26393386 DOI: 10.1185/03007995.2015.1086994  0.64
2015 Song J, Zhu C, Zhang X, Wen X, Liu L, Peng J, Guo H, Yi C. Biochemical and Structural Insights into the Mechanism of DNA Recognition by Arabidopsis ETHYLENE INSENSITIVE3. Plos One. 10: e0137439. PMID 26352699 DOI: 10.1371/journal.pone.0137439  1
2015 Xia B, Han D, Lu X, Sun Z, Zhou A, Yin Q, Zeng H, Liu M, Jiang X, Xie W, He C, Yi C. Bisulfite-free, base-resolution analysis of 5-formylcytosine at the genome scale. Nature Methods. PMID 26344045 DOI: 10.1038/nmeth.3569  1
2015 Wang Y, Zhang S, Liu H, Zhang L, Yi C, Li H. Changes and roles of membrane compositions in the adaptation of Saccharomyces cerevisiae to ethanol. Journal of Basic Microbiology. PMID 26265555 DOI: 10.1002/jobm.201500300  0.4
2015 Zheng G, Qin Y, Clark WC, Dai Q, Yi C, He C, Lambowitz AM, Pan T. Efficient and quantitative high-throughput tRNA sequencing. Nature Methods. PMID 26214130 DOI: 10.1038/nmeth.3478  1
2015 Li X, Zhu P, Ma S, Song J, Bai J, Sun F, Yi C. Chemical pulldown reveals dynamic pseudouridylation of the mammalian transcriptome. Nature Chemical Biology. PMID 26075521 DOI: 10.1038/nchembio.1836  0.32
2015 Yang X, Li Z, Wang N, Li L, Song L, He T, Sun L, Wang Z, Wu Q, Luo N, Yi C, Gong C. Curcumin-encapsulated polymeric micelles suppress the development of colon cancer in vitro and in vivo. Scientific Reports. 5: 10322. PMID 25980982 DOI: 10.1038/srep10322  0.64
2015 Yi C, Lin J, Zhang W, Ding J. Faults Diagnostics of Railway Axle Bearings Based on IMF's Confidence Index Algorithm for Ensemble EMD. Sensors (Basel, Switzerland). 15: 10991-1011. PMID 25970256 DOI: 10.3390/s150510991  0.4
2015 Yi C, Wilhite A, Zhang L, Hu R, Chuang SS, Zheng J, Gong X. Enhanced Thermoelectric Properties of Poly(3,4-ethylenedioxythiophene):poly(styrenesulfonate) by Binary Secondary Dopants. Acs Applied Materials & Interfaces. 7: 8984-9. PMID 25886582 DOI: 10.1021/acsami.5b01960  0.4
2015 Zhang D, Gao ZG, Zhang K, Kiselev E, Crane S, Wang J, Paoletta S, Yi C, Ma L, Zhang W, Han GW, Liu H, Cherezov V, Katritch V, Jiang H, et al. Two disparate ligand-binding sites in the human P2Y1 receptor. Nature. 520: 317-21. PMID 25822790 DOI: 10.1038/nature14287  0.4
2015 Xiao Y, Wang J, Qin Y, Xuan Y, Jia Y, Hu W, Yu W, Dai M, Li Z, Yi C, Zhao S, Li M, Du S, Cheng W, Xiao X, et al. Ku80 cooperates with CBP to promote COX-2 expression and tumor growth. Oncotarget. 6: 8046-61. PMID 25797267  0.32
2015 Zhang L, Hu H, Li PC, Yi CN, Jiang JJ, Chen QQ. Reliability analysis of operator's monitoring behavior in digital main control room of nuclear power plants and its application Yuanzineng Kexue Jishu/Atomic Energy Science and Technology. 49: 921-929. DOI: 10.7538/yzk.2015.49.05.0921  0.4
2015 Afanasyev A, Yi C, Wang L, Zhang B, Zhang L. SNAMP: Secure namespace mapping to scale NDN forwarding Proceedings - Ieee Infocom. 2015: 281-286. DOI: 10.1109/INFCOMW.2015.7179398  0.4
2015 Xiong X, Yi C, Han Q, Shi L, Li S. I2/ionic liquid as a highly efficient catalyst for per-O-acetylation of sugar under microwave irradiation Cuihua Xuebao/Chinese Journal of Catalysis. 36: 237-243. DOI: 10.1016/S1872-2067(14)60219-9  0.32
2015 Chen Y, Li Y, Wang Y, Zhang M, Cui Z, Yi C, Liu G. Late Quaternary glacial history of the Karlik Range, easternmost Tian Shan, derived from 10Be surface exposure and optically stimulated luminescence datings Quaternary Science Reviews. 115: 17-27. DOI: 10.1016/j.quascirev.2015.02.010  0.36
2015 Li X, Ma S, Yi C. Pseudouridine Chemical Labeling and Profiling Methods in Enzymology. DOI: 10.1016/bs.mie.2015.03.010  1
2014 Yi C, Zhang L, Li L, Liu X, Ling S, Zhang F, Liang W. Establishment of an orthotopic transplantation tumor model in nude mice using a drug-resistant human ovarian cancer cell line with a high expression of c-Kit. Oncology Letters. 8: 2611-2615. PMID 25364436 DOI: 10.3892/ol.2014.2537  0.4
2014 Yin Y, Yang L, Zheng G, Gu C, Yi C, He C, Gao YQ, Zhao XS. Dynamics of spontaneous flipping of a mismatched base in DNA duplex. Proceedings of the National Academy of Sciences of the United States of America. 111: 8043-8. PMID 24843124 DOI: 10.1073/pnas.1400667111  1
2014 Li X, Song J, Yi C. Genome-wide mapping of cellular protein-RNA interactions enabled by chemical crosslinking. Genomics, Proteomics & Bioinformatics. 12: 72-8. PMID 24747191 DOI: 10.1016/j.gpb.2014.03.001  0.32
2014 Zhang X, Zhu Z, An F, Hao D, Li P, Song J, Yi C, Guo H. Jasmonate-activated MYC2 represses ETHYLENE INSENSITIVE3 activity to antagonize ethylene-promoted apical hook formation in Arabidopsis. The Plant Cell. 26: 1105-17. PMID 24668749 DOI: 10.1105/tpc.113.122002  0.32
2014 Zhu C, Yi C. Switching demethylation activities between AlkB family RNA/DNA demethylases through exchange of active-site residues. Angewandte Chemie (International Ed. in English). 53: 3659-62. PMID 24596302 DOI: 10.1002/anie.201310050  1
2013 Vilfan ID, Tsai YC, Clark TA, Wegener J, Dai Q, Yi C, Pan T, Turner SW, Korlach J. Analysis of RNA base modification and structural rearrangement by single-molecule real-time detection of reverse transcription. Journal of Nanobiotechnology. 11: 8. PMID 23552456 DOI: 10.1186/1477-3155-11-8  1
2013 Yi C, He C. DNA repair by reversal of DNA damage. Cold Spring Harbor Perspectives in Biology. 5: a012575. PMID 23284047 DOI: 10.1101/cshperspect.a012575  1
2012 Song CX, Yi C, He C. Mapping recently identified nucleotide variants in the genome and transcriptome. Nature Biotechnology. 30: 1107-16. PMID 23138310 DOI: 10.1038/nbt.2398  1
2012 Sun F, Ding Y, Ji Q, Liang Z, Deng X, Wong CC, Yi C, Zhang L, Xie S, Alvarez S, Hicks LM, Luo C, Jiang H, Lan L, He C. Protein cysteine phosphorylation of SarA/MgrA family transcriptional regulators mediates bacterial virulence and antibiotic resistance. Proceedings of the National Academy of Sciences of the United States of America. 109: 15461-6. PMID 22927394 DOI: 10.1073/pnas.1205952109  1
2012 Yi C, Chen B, Qi B, Zhang W, Jia G, Zhang L, Li CJ, Dinner AR, Yang CG, He C. Duplex interrogation by a direct DNA repair protein in search of base damage. Nature Structural & Molecular Biology. 19: 671-6. PMID 22659876 DOI: 10.1038/nsmb.2320  1
2012 Parisien M, Yi C, Pan T. Rationalization and prediction of selective decoding of pseudouridine-modified nonsense and sense codons. Rna (New York, N.Y.). 18: 355-67. PMID 22282339 DOI: 10.1261/rna.031351.111  1
2011 Jia G, Fu Y, Zhao X, Dai Q, Zheng G, Yang Y, Yi C, Lindahl T, Pan T, Yang YG, He C. N6-methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO. Nature Chemical Biology. 7: 885-7. PMID 22002720 DOI: 10.1038/nchembio.687  1
2011 Sun F, Zhou L, Zhao BC, Deng X, Cho H, Yi C, Jian X, Song CX, Luan CH, Bae T, Li Z, He C. Targeting MgrA-mediated virulence regulation in Staphylococcus aureus. Chemistry & Biology. 18: 1032-41. PMID 21867918 DOI: 10.1016/j.chembiol.2011.05.014  1
2011 Yi C, Pan T. Cellular dynamics of RNA modification. Accounts of Chemical Research. 44: 1380-8. PMID 21615108 DOI: 10.1021/ar200057m  1
2011 Song CX, Szulwach KE, Fu Y, Dai Q, Yi C, Li X, Li Y, Chen CH, Zhang W, Jian X, Wang J, Zhang L, Looney TJ, Zhang B, Godley LA, et al. Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine. Nature Biotechnology. 29: 68-72. PMID 21151123 DOI: 10.1038/nbt.1732  1
2011 Yi C. Probing enzyme-mediated oxidation reactions in crystallo Pure and Applied Chemistry. 83: 2199-2212. DOI: 10.1351/PAC-CON-11-08-10  1
2010 Yi C, Jia G, Hou G, Dai Q, Zhang W, Zheng G, Jian X, Yang CG, Cui Q, He C. Iron-catalysed oxidation intermediates captured in a DNA repair dioxygenase. Nature. 468: 330-3. PMID 21068844 DOI: 10.1038/nature09497  1
2010 Chen H, Yi C, Zhang J, Zhang W, Ge Z, Yang CG, He C. Structural insight into the oxidation-sensing mechanism of the antibiotic resistance of regulator MexR. Embo Reports. 11: 685-90. PMID 20616806 DOI: 10.1038/embor.2010.96  1
2010 Lu L, Yi C, Jian X, Zheng G, He C. Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked protein-DNA system. Nucleic Acids Research. 38: 4415-25. PMID 20223766 DOI: 10.1093/nar/gkq129  1
2010 Yi C, He C. AlkB recognition of a bulky DNA base adduct stabilized by chemical cross-linking Science China Chemistry. 53: 86-90. DOI: 10.1007/s11426-010-0008-0  1
2009 Yi C, Yang CG, He C. A non-heme iron-mediated chemical demethylation in DNA and RNA. Accounts of Chemical Research. 42: 519-29. PMID 19852088 DOI: 10.1021/ar800178j  1
2008 Jia G, Yang CG, Yang S, Jian X, Yi C, Zhou Z, He C. Oxidative demethylation of 3-methylthymine and 3-methyluracil in single-stranded DNA and RNA by mouse and human FTO. Febs Letters. 582: 3313-9. PMID 18775698 DOI: 10.1016/j.febslet.2008.08.019  1
2008 Yang CG, Yi C, Duguid EM, Sullivan CT, Jian X, Rice PA, He C. Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA. Nature. 452: 961-5. PMID 18432238 DOI: 10.1038/nature06889  1
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