Yunyu Shi - Publications

Affiliations: 
School of Life Sciences University of Science and Technology China 

114 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Nshogoza G, Liu Y, Gao J, Liu M, Moududee SA, Ma R, Li F, Zhang J, Wu J, Shi Y, Ruan K. NMR Fragment-Based Screening against Tandem RNA Recognition Motifs of TDP-43. International Journal of Molecular Sciences. 20. PMID 31262091 DOI: 10.3390/ijms20133230  0.52
2019 Liu X, Shen S, Wu P, Li F, Liu X, Wang C, Gong Q, Wu J, Yao X, Zhang H, Shi Y. Structural insights into dimethylation of 12S rRNA by TFB1M: indispensable role in translation of mitochondrial genes and mitochondrial function. Nucleic Acids Research. PMID 31251801 DOI: 10.1093/nar/gkz505  0.52
2019 Lv Y, Wu J, Shi Y. Metabolic and physiological perturbations of Escherichia coli W3100 by bacterial small RNA RyhB. Biochimie. PMID 31002843 DOI: 10.1016/j.biochi.2019.04.016  0.48
2019 Zhang J, Guo Q, Gao J, Xu C, Zhang B, Li M, She J, Shi Y, Zhang Z, Ruan K, Wu J. Structural insight into the unique dsDNA binding topology of the human ORC2 wing helix domain. The Febs Journal. PMID 30963726 DOI: 10.1111/febs.14844  0.6
2019 Xie G, Vo TV, Thillainadesan G, Holla S, Zhang B, Jiang Y, Lv M, Xu Z, Wang C, Balachandran V, Shi Y, Li F, Grewal SIS. A conserved dimer interface connects ERH and YTH family proteins to promote gene silencing. Nature Communications. 10: 251. PMID 30651569 DOI: 10.1038/s41467-018-08273-9  0.52
2019 Lv M, Yao Y, Li F, Xu L, Yang L, Gong Q, Xu YZ, Shi Y, Fan YJ, Tang Y. Structural insights reveal the specific recognition of roX RNA by the dsRNA-binding domains of the RNA helicase MLE and its indispensable role in dosage compensation in Drosophila. Nucleic Acids Research. PMID 30649456 DOI: 10.1093/nar/gky1308  0.52
2019 Bluhm A, Viceconte N, Li F, Rane G, Ritz S, Wang S, Levin M, Shi Y, Kappei D, Butter F. ZBTB10 binds the telomeric variant repeat TTGGGG and interacts with TRF2. Nucleic Acids Research. PMID 30629181 DOI: 10.1093/nar/gky1289  0.36
2018 Cheng L, Li F, Jiang Y, Yu H, Xie C, Shi Y, Gong Q. Structural insights into a unique preference for 3' terminal guanine of mirtron in Drosophila TUTase tailor. Nucleic Acids Research. PMID 30407553 DOI: 10.1093/nar/gky1116  0.52
2018 Jiang Y, Yu H, Li F, Cheng L, Zhu L, Shi Y, Gong Q. Unveiling the structural features that determine the dual methyltransferase activities of Streptococcus pneumoniae RlmCD. Plos Pathogens. 14: e1007379. PMID 30388185 DOI: 10.1371/journal.ppat.1007379  0.52
2018 Xie C, He C, Jiang Y, Yu H, Cheng L, Nshogoza G, Ala MS, Tian C, Wu J, Shi Y, Li F. Structural insights into the recognition of phosphorylated Hop1 by Mek1. Acta Crystallographica. Section D, Structural Biology. 74: 1027-1038. PMID 30289413 DOI: 10.1107/S2059798318011993  0.52
2018 Moududee SA, Jiang Y, Gilbert N, Xie G, Xu Z, Wu J, Gong Q, Tang Y, Shi Y. Structural and functional characterization of hMEX-3C Ring finger domain as an E3 ubiquitin ligase. Protein Science : a Publication of the Protein Society. PMID 30095198 DOI: 10.1002/pro.3473  0.52
2018 Yang SF, Sun AA, Shi Y, Li F, Pickett HA. Structural and functional characterization of the RBBP4-ZNF827 interaction and its role in NuRD recruitment to telomeres. The Biochemical Journal. PMID 30045876 DOI: 10.1042/BCJ20180310  0.36
2018 Xu D, Ma R, Zhang J, Liu Z, Wu B, Peng J, Zhai Y, Gong Q, Shi Y, Wu J, Wu Q, Zhang Z, Ruan K. Dynamic Nature of CTCF Tandem 11 Zinc Fingers in Multivalent Recognition of DNA as Revealed by NMR Spectroscopy. The Journal of Physical Chemistry Letters. PMID 29965776 DOI: 10.1021/acs.jpclett.8b01440  0.6
2017 Ma X, Wang L, Huang, Li Y, Yang D, Li T, Li F, Sun L, Wei H, He K, Yu F, Zhao D, Hu L, Xing S, Liu Z, ... ... Shi Y, et al. Polo-like kinase 1 coordinates biosynthesis during cell cycle progression by directly activating pentose phosphate pathway. Nature Communications. 8: 1506. PMID 29138396 DOI: 10.1038/s41467-017-01647-5  0.52
2017 Zhao Y, Zhang G, He C, Mei Y, Shi Y, Li F. The 11th C2H2 zinc finger and an adjacent C-terminal arm are responsible for TZAP recognition of telomeric DNA. Cell Research. PMID 29134956 DOI: 10.1038/cr.2017.141  0.36
2017 Sun A, Li F, Liu Z, Jiang Y, Zhang J, Wu J, Shi Y. Structural and biochemical insights into human zinc finger protein AEBP2 reveals interactions with RBBP4. Protein & Cell. PMID 29134516 DOI: 10.1007/s13238-017-0483-6  0.52
2017 Xu L, Wang L, Peng J, Li F, Wu L, Zhang B, Lv M, Zhang J, Gong Q, Zhang R, Zuo X, Zhang Z, Wu J, Tang Y, Shi Y. Insights into the Structure of Dimeric RNA Helicase CsdA and Indispensable Role of Its C-Terminal Regions. Structure (London, England : 1993). PMID 29107486 DOI: 10.1016/j.str.2017.09.013  0.6
2017 Bao X, Liu H, Liu X, Ruan K, Zhang Y, Zhang Z, Hu Q, Liu Y, Akram S, Zhang J, Gong Q, Wang W, Yuan X, Li J, Zhao L, ... ... Shi Y, et al. Mitosis-specific acetylation tunes Ran effector binding for chromosome segregation. Journal of Molecular Cell Biology. PMID 29040603 DOI: 10.1093/jmcb/mjx045  0.6
2017 Bao H, Wang N, Wang C, Jiang Y, Liu J, Xu L, Wu J, Shi Y. Structural basis for the specific recognition of 18S rRNA by APUM23. Nucleic Acids Research. PMID 29036323 DOI: 10.1093/nar/gkx872  0.52
2017 Jiang Y, Li F, Wu J, Shi Y, Gong Q. Structural insights into substrate selectivity of ribosomal RNA methyltransferase RlmCD. Plos One. 12: e0185226. PMID 28949991 DOI: 10.1371/journal.pone.0185226  0.52
2017 Wu P, Liu X, Yang L, Sun Y, Gong Q, Wu J, Shi Y. The important conformational plasticity of DsrA sRNA for adapting multiple target regulation. Nucleic Acids Research. 45: 9625-9639. PMID 28934467 DOI: 10.1093/nar/gkx570  0.52
2017 Yang L, Wang C, Li F, Zhang J, Nayab A, Wu J, Shi Y, Gong Q. The human RNA-binding protein and E3 ligase MEX-3C binds the MEX-3-recognition element (MRE) motif with high affinity. The Journal of Biological Chemistry. PMID 28808060 DOI: 10.1074/jbc.M117.797746  0.52
2017 Wen B, Wang W, Zhang J, Gong Q, Shi Y, Wu J, Zhang Z. Structural and dynamic properties of the C-terminal region of the Escherichia coli RNA chaperone Hfq: integrative experimental and computational studies. Physical Chemistry Chemical Physics : Pccp. PMID 28752165 DOI: 10.1039/c7cp01044c  0.6
2016 Lv M, Wang C, Li F, Peng J, Wen B, Gong Q, Shi Y, Tang Y. Structural insights into the recognition of phosphorylated FUNDC1 by LC3B in mitophagy. Protein & Cell. PMID 27757847 DOI: 10.1007/s13238-016-0328-8  0.6
2016 Bao H, Li F, Wang C, Wang N, Jiang Y, Tang Y, Wu J, Shi Y. Structural Basis for the Specific Recognition of RhoA by the Dual GTPase-activating Protein ARAP3. The Journal of Biological Chemistry. PMID 27311713 DOI: 10.1074/jbc.M116.736140  0.6
2015 Zhang W, Zeng F, Liu Y, Shao C, Li S, Lv H, Shi Y, Niu L, Teng M, Li X. Crystal Structure of Human SSRP1 Middle Domain Reveals a Role in DNA Binding. Scientific Reports. 5: 18688. PMID 26687053 DOI: 10.1038/srep18688  0.6
2015 Bao Y, Liu Z, Zhang J, Wu J, Shi Y. (1)H, (13)C and (15)N resonance assignments and secondary structure of the human PHF6-ePHD1 domain. Biomolecular Nmr Assignments. PMID 26286319 DOI: 10.1007/s12104-015-9627-x  0.52
2015 Yu X, Wang J, Wu J, Shi Y. A systematic study of the cellular metabolic regulation of Jhdm1b in tumor cells. Molecular Biosystems. 11: 1867-75. PMID 25877602 DOI: 10.1039/c5mb00166h  0.48
2015 Wang L, Wang W, Li F, Zhang J, Wu J, Gong Q, Shi Y. Structural insights into the recognition of the internal A-rich linker from OxyS sRNA by Escherichia coli Hfq. Nucleic Acids Research. 43: 2400-11. PMID 25670676 DOI: 10.1093/nar/gkv072  0.6
2015 Liu Z, Li F, Zhang B, Li S, Wu J, Shi Y. Structural basis of plant homeodomain finger 6 (PHF6) recognition by the retinoblastoma binding protein 4 (RBBP4) component of the nucleosome remodeling and deacetylase (NuRD) complex. The Journal of Biological Chemistry. 290: 6630-8. PMID 25601084 DOI: 10.1074/jbc.M114.610196  0.52
2015 Wan C, Wu B, Song Z, Zhang J, Chu H, Wang A, Liu Q, Shi Y, Li G, Wang J. Insights into the molecular recognition of the granuphilin C2A domain with PI(4,5)P2. Chemistry and Physics of Lipids. 186: 61-7. PMID 25595293 DOI: 10.1016/j.chemphyslip.2015.01.003  0.48
2014 Li F, Zhao D, Wu J, Shi Y. Structure of the YTH domain of human YTHDF2 in complex with an m(6)A mononucleotide reveals an aromatic cage for m(6)A recognition. Cell Research. 24: 1490-2. PMID 25412658 DOI: 10.1038/cr.2014.153  0.52
2014 Zou Y, Shao Z, Peng J, Li F, Gong D, Wang C, Zuo X, Zhang Z, Wu J, Shi Y, Gong Q. Crystal structure of triple-BRCT-domain of ECT2 and insights into the binding characteristics to CYK-4. Febs Letters. 588: 2911-20. PMID 25068414 DOI: 10.1016/j.febslet.2014.07.019  0.6
2014 Liu X, Song Z, Huo Y, Zhang J, Zhu T, Wang J, Zhao X, Aikhionbare F, Zhang J, Duan H, Wu J, Dou Z, Shi Y, Yao X. Chromatin protein HP1 interacts with the mitotic regulator borealin protein and specifies the centromere localization of the chromosomal passenger complex. The Journal of Biological Chemistry. 289: 20638-49. PMID 24917673 DOI: 10.1074/jbc.M114.572842  0.52
2014 Zhao D, Wang X, Peng J, Wang C, Li F, Sun Q, Zhang Y, Zhang J, Cai G, Zuo X, Wu J, Shi Y, Zhang Z, Gong Q. Structural investigation of the interaction between the tandem SH3 domains of c-Cbl-associated protein and vinculin. Journal of Structural Biology. 187: 194-205. PMID 24878663 DOI: 10.1016/j.jsb.2014.05.009  0.6
2014 Wang C, Zhu Y, Caceres TB, Liu L, Peng J, Wang J, Chen J, Chen X, Zhang Z, Zuo X, Gong Q, Teng M, Hevel JM, Wu J, Shi Y. Structural determinants for the strict monomethylation activity by trypanosoma brucei protein arginine methyltransferase 7. Structure (London, England : 1993). 22: 756-68. PMID 24726341 DOI: 10.1016/j.str.2014.03.003  0.6
2014 Wang J, Qin S, Li F, Li S, Zhang W, Peng J, Zhang Z, Gong Q, Wu J, Shi Y. Crystal structure of human BS69 Bromo-ZnF-PWWP reveals its role in H3K36me3 nucleosome binding. Cell Research. 24: 890-3. PMID 24675531 DOI: 10.1038/cr.2014.38  0.6
2014 Tang Y, Zhang J, Yu J, Xu L, Wu J, Zhou CZ, Shi Y. Structure-guided activity enhancement and catalytic mechanism of yeast grx8. Biochemistry. 53: 2185-96. PMID 24611845 DOI: 10.1021/bi401293s  0.52
2014 Liu Z, Li F, Ruan K, Zhang J, Mei Y, Wu J, Shi Y. Structural and functional insights into the human Börjeson-Forssman-Lehmann syndrome-associated protein PHF6. The Journal of Biological Chemistry. 289: 10069-83. PMID 24554700 DOI: 10.1074/jbc.M113.535351  0.6
2014 Wang C, Zhu Y, Chen J, Li X, Peng J, Chen J, Zou Y, Zhang Z, Jin H, Yang P, Wu J, Niu L, Gong Q, Teng M, Shi Y. Crystal structure of arginine methyltransferase 6 from Trypanosoma brucei. Plos One. 9: e87267. PMID 24498306 DOI: 10.1371/journal.pone.0087267  0.6
2014 Shao Z, Yan W, Peng J, Zuo X, Zou Y, Li F, Gong D, Ma R, Wu J, Shi Y, Zhang Z, Teng M, Li X, Gong Q. Crystal structure of tRNA m1G9 methyltransferase Trm10: insight into the catalytic mechanism and recognition of tRNA substrate. Nucleic Acids Research. 42: 509-25. PMID 24081582 DOI: 10.1093/nar/gkt869  0.6
2013 He C, Pillai SS, Taglini F, Li F, Ruan K, Zhang J, Wu J, Shi Y, Bayne EH. Structural analysis of Stc1 provides insights into the coupling of RNAi and chromatin modification. Proceedings of the National Academy of Sciences of the United States of America. 110: E1879-88. PMID 23613586 DOI: 10.1073/pnas.1212155110  0.6
2013 Wang W, Wang L, Wu J, Gong Q, Shi Y. Hfq-bridged ternary complex is important for translation activation of rpoS by DsrA. Nucleic Acids Research. 41: 5938-48. PMID 23605038 DOI: 10.1093/nar/gkt276  0.52
2013 Li S, Wandel MP, Li F, Liu Z, He C, Wu J, Shi Y, Randow F. Sterical hindrance promotes selectivity of the autophagy cargo receptor NDP52 for the danger receptor galectin-8 in antibacterial autophagy. Science Signaling. 6: ra9. PMID 23386746 DOI: 10.1126/scisignal.2003730  0.52
2013 He C, Li F, Zhang J, Wu J, Shi Y. The methyltransferase NSD3 has chromatin-binding motifs, PHD5-C5HCH, that are distinct from other NSD (nuclear receptor SET domain) family members in their histone H3 recognition. The Journal of Biological Chemistry. 288: 4692-703. PMID 23269674 DOI: 10.1074/jbc.M112.426148  0.52
2013 Gong D, Yang F, Li F, Qian D, Wu M, Shao Z, Wu M, Wu J, Shi Y. Crystal structure and functional characterization of the human RBM25 PWI domain and its flanking basic region. The Biochemical Journal. 450: 85-94. PMID 23190262 DOI: 10.1042/BJ20121382  0.52
2013 Shen T, Rui B, Zhou H, Zhang X, Yi Y, Wen H, Zheng H, Wu J, Shi Y. Metabolic flux ratio analysis and multi-objective optimization revealed a globally conserved and coordinated metabolic response of E. coli to paraquat-induced oxidative stress. Molecular Biosystems. 9: 121-32. PMID 23128557 DOI: 10.1039/c2mb25285f  0.48
2012 Hu Y, Hong W, Shi Y, Liu H. Temperature-Accelerated Sampling and Amplified Collective Motion with Adiabatic Reweighting to Obtain Canonical Distributions and Ensemble Averages. Journal of Chemical Theory and Computation. 8: 3777-92. PMID 26593019 DOI: 10.1021/ct300061g  0.6
2012 Xia P, Wang Z, Liu X, Wu B, Wang J, Ward T, Zhang L, Ding X, Gibbons G, Shi Y, Yao X. EB1 acetylation by P300/CBP-associated factor (PCAF) ensures accurate kinetochore-microtubule interactions in mitosis. Proceedings of the National Academy of Sciences of the United States of America. 109: 16564-9. PMID 23001180 DOI: 10.1073/pnas.1202639109  0.48
2012 Song Z, Wu P, Ji P, Zhang J, Gong Q, Wu J, Shi Y. Solution structure of the second RRM domain of RBM5 and its unusual binding characters for different RNA targets. Biochemistry. 51: 6667-78. PMID 22839758 DOI: 10.1021/bi300539t  0.52
2012 Liu L, Qin S, Zhang J, Ji P, Shi Y, Wu J. Solution structure of an atypical PHD finger in BRPF2 and its interaction with DNA. Journal of Structural Biology. 180: 165-73. PMID 22820306 DOI: 10.1016/j.jsb.2012.06.014  0.52
2012 Wu B, Wang F, Zhang J, Zhang Z, Qin L, Peng J, Li F, Liu J, Lu G, Gong Q, Yao X, Wu J, Shi Y. Identification and structural basis for a novel interaction between Vav2 and Arap3. Journal of Structural Biology. 180: 84-95. PMID 22750419 DOI: 10.1016/j.jsb.2012.06.011  0.6
2012 Qiu Y, Liu L, Zhao C, Han C, Li F, Zhang J, Wang Y, Li G, Mei Y, Wu M, Wu J, Shi Y. Combinatorial readout of unmodified H3R2 and acetylated H3K14 by the tandem PHD finger of MOZ reveals a regulatory mechanism for HOXA9 transcription. Genes & Development. 26: 1376-91. PMID 22713874 DOI: 10.1101/gad.188359.112  0.52
2012 Li X, Liu K, Li F, Wang J, Huang H, Wu J, Shi Y. Structure of C-terminal tandem BRCT repeats of Rtt107 protein reveals critical role in interaction with phosphorylated histone H2A during DNA damage repair. The Journal of Biological Chemistry. 287: 9137-46. PMID 22262834 DOI: 10.1074/jbc.M111.311860  0.52
2012 Shao Z, Li F, Sy SM, Yan W, Zhang Z, Gong D, Wen B, Huen MS, Gong Q, Wu J, Shi Y. Specific recognition of phosphorylated tail of H2AX by the tandem BRCT domains of MCPH1 revealed by complex structure. Journal of Structural Biology. 177: 459-68. PMID 22154951 DOI: 10.1016/j.jsb.2011.11.022  0.6
2012 Qiu Y, Zhang W, Zhao C, Wang Y, Wang W, Zhang J, Zhang Z, Li G, Shi Y, Tu X, Wu J. Solution structure of the Pdp1 PWWP domain reveals its unique binding sites for methylated H4K20 and DNA. The Biochemical Journal. 442: 527-38. PMID 22150589 DOI: 10.1042/BJ20111885  0.6
2011 Yan W, Shao Z, Li F, Niu L, Shi Y, Teng M, Li X. Structural basis of γH2AX recognition by human PTIP BRCT5-BRCT6 domains in the DNA damage response pathway. Febs Letters. 585: 3874-9. PMID 22064073 DOI: 10.1016/j.febslet.2011.10.045  0.4
2011 Wang W, Wang L, Zou Y, Zhang J, Gong Q, Wu J, Shi Y. Cooperation of Escherichia coli Hfq hexamers in DsrA binding. Genes & Development. 25: 2106-17. PMID 21979921 DOI: 10.1101/gad.16746011  0.52
2011 Qin S, Jin L, Zhang J, Liu L, Ji P, Wu M, Wu J, Shi Y. Recognition of unmodified histone H3 by the first PHD finger of bromodomain-PHD finger protein 2 provides insights into the regulation of histone acetyltransferases monocytic leukemic zinc-finger protein (MOZ) and MOZ-related factor (MORF). The Journal of Biological Chemistry. 286: 36944-55. PMID 21880731 DOI: 10.1074/jbc.M111.244400  0.52
2011 Liu J, Zhang J, Gong Q, Xiong P, Huang H, Wu B, Lu G, Wu J, Shi Y. Solution structure of tandem SH2 domains from Spt6 protein and their binding to the phosphorylated RNA polymerase II C-terminal domain. The Journal of Biological Chemistry. 286: 29218-26. PMID 21676864 DOI: 10.1074/jbc.M111.252130  0.6
2011 Hu H, Liu Y, Wang M, Fang J, Huang H, Yang N, Li Y, Wang J, Yao X, Shi Y, Li G, Xu RM. Structure of a CENP-A-histone H4 heterodimer in complex with chaperone HJURP. Genes & Development. 25: 901-6. PMID 21478274 DOI: 10.1101/gad.2045111  0.48
2011 Ji P, Yang G, Zhang J, Wu J, Chen Z, Gong Q, Wu J, Shi Y. Solution structure of the second PDZ domain of Zonula Occludens 1. Proteins. 79: 1342-6. PMID 21387411 DOI: 10.1002/prot.22955  0.52
2011 Wu F, Liu Y, Zhu Z, Huang H, Ding B, Wu J, Shi Y. The 1.9Å crystal structure of Prp20p from Saccharomyces cerevisiae and its binding properties to Gsp1p and histones. Journal of Structural Biology. 174: 213-22. PMID 21093592 DOI: 10.1016/j.jsb.2010.11.016  0.48
2010 Rui B, Shen T, Zhou H, Liu J, Chen J, Pan X, Liu H, Wu J, Zheng H, Shi Y. A systematic investigation of Escherichia coli central carbon metabolism in response to superoxide stress. Bmc Systems Biology. 4: 122. PMID 20809933 DOI: 10.1186/1752-0509-4-122  0.6
2010 Liu Y, Huang H, Zhou BO, Wang SS, Hu Y, Li X, Liu J, Zang J, Niu L, Wu J, Zhou JQ, Teng M, Shi Y. Structural analysis of Rtt106p reveals a DNA binding role required for heterochromatin silencing. The Journal of Biological Chemistry. 285: 4251-62. PMID 20007951 DOI: 10.1074/jbc.M109.055996  0.48
2010 Wang X, Zhang S, Zhang J, Huang X, Xu C, Wang W, Liu Z, Wu J, Shi Y. A large intrinsically disordered region in SKIP and its disorder-order transition induced by PPIL1 binding revealed by NMR. The Journal of Biological Chemistry. 285: 4951-63. PMID 20007319 DOI: 10.1074/jbc.M109.087528  0.52
2009 Huang X, Beullens M, Zhang J, Zhou Y, Nicolaescu E, Lesage B, Hu Q, Wu J, Bollen M, Shi Y. Structure and function of the two tandem WW domains of the pre-mRNA splicing factor FBP21 (formin-binding protein 21). The Journal of Biological Chemistry. 284: 25375-87. PMID 19592703 DOI: 10.1074/jbc.M109.024828  0.52
2009 Hong J, Zhang J, Liu Z, Qin S, Wu J, Shi Y. Solution structure of S. cerevisiae PDCD5-like protein and its promoting role in H(2)O(2)-induced apoptosis in yeast. Biochemistry. 48: 6824-34. PMID 19469552 DOI: 10.1021/bi900488n  0.52
2009 Liu Z, Zhang J, Wang X, Ding Y, Wu J, Shi Y. Temperature-induced partially unfolded state of hUBF HMG Box-5: conformational and dynamic investigations of the Box-5 thermal intermediate ensemble. Proteins. 77: 432-47. PMID 19452555 DOI: 10.1002/prot.22454  0.52
2009 Shen T, Shen W, Xiong Y, Liu H, Zheng H, Zhou H, Rui B, Liu J, Wu J, Shi Y. Increasing the accuracy of mass isotopomer analysis through calibration curves constructed using biologically synthesized compounds. Journal of Mass Spectrometry : Jms. 44: 1066-80. PMID 19370770 DOI: 10.1002/jms.1583  0.6
2008 Yu M, Yang F, Chu W, Wang Y, Zhao H, Gao B, Zhao W, Sun J, Wu F, Zhang X, Shi Y, Wu Z. 3D local structure around Zn in Kti11p as a representative Zn-(Cys)4 motif as obtained by MXAN. Biochemical and Biophysical Research Communications. 374: 28-32. PMID 18606152 DOI: 10.1016/j.bbrc.2008.06.116  0.4
2008 Liu Y, Wang X, Zhang J, Huang H, Ding B, Wu J, Shi Y. Structural basis and binding properties of the second bromodomain of Brd4 with acetylated histone tails. Biochemistry. 47: 6403-17. PMID 18500820 DOI: 10.1021/bi8001659  0.52
2008 Liu J, Zhang J, Yang Y, Huang H, Shen W, Hu Q, Wang X, Wu J, Shi Y. Conformational change upon ligand binding and dynamics of the PDZ domain from leukemia-associated Rho guanine nucleotide exchange factor. Protein Science : a Publication of the Protein Society. 17: 1003-14. PMID 18411422 DOI: 10.1110/ps.073416508  0.52
2008 Gräslund S, Nordlund P, Weigelt J, Hallberg BM, Bray J, Gileadi O, Knapp S, Oppermann U, Arrowsmith C, Hui R, Ming J, dhe-Paganon S, ... ... Shi Y, et al. Protein production and purification. Nature Methods. 5: 135-46. PMID 18235434 DOI: 10.1038/nmeth.f.202  0.6
2008 Wu F, Zhang J, Sun J, Huang H, Ji P, Chu W, Yu M, Yang F, Wu Z, Wu J, Shi Y. Solution structure of human DESR1, a CSL zinc-binding protein. Proteins. 71: 514-8. PMID 18214955 DOI: 10.1002/prot.21915  0.52
2007 Niu X, Chen Q, Zhang J, Shen W, Shi Y, Wu J. Interesting structural and dynamical behaviors exhibited by the AF-6 PDZ domain upon Bcr peptide binding. Biochemistry. 46: 15042-53. PMID 18052198 DOI: 10.1021/bi701303p  0.52
2007 Hu Q, Shen W, Huang H, Liu J, Zhang J, Huang X, Wu J, Shi Y. Insight into the binding properties of MEKK3 PB1 to MEK5 PB1 from its solution structure. Biochemistry. 46: 13478-89. PMID 17985933 DOI: 10.1021/bi701341n  0.52
2007 Shi Z, Tabassum S, Jiang W, Zhang J, Mathur S, Wu J, Shi Y. Identification of a potent inhibitor of human dual-specific phosphatase, VHR, from computer-aided and NMR-based screening to cellular effects. Chembiochem : a European Journal of Chemical Biology. 8: 2092-9. PMID 17933004 DOI: 10.1002/cbic.200700397  0.52
2007 Wu J, Yang Y, Zhang J, Ji P, Du W, Jiang P, Xie D, Huang H, Wu M, Zhang G, Wu J, Shi Y. Domain-swapped dimerization of the second PDZ domain of ZO2 may provide a structural basis for the polymerization of claudins. The Journal of Biological Chemistry. 282: 35988-99. PMID 17897942 DOI: 10.1074/jbc.M703826200  0.52
2007 Huang H, Zhang J, Shen W, Wang X, Wu J, Wu J, Shi Y. Solution structure of the second bromodomain of Brd2 and its specific interaction with acetylated histone tails. Bmc Structural Biology. 7: 57. PMID 17848202 DOI: 10.1186/1472-6807-7-57  0.52
2007 Shi Y, Wu J. Structural basis of protein-protein interaction studied by NMR. Journal of Structural and Functional Genomics. 8: 67-72. PMID 17763922 DOI: 10.1007/s10969-007-9021-8  0.48
2007 Jin X, Zhang J, Dai H, Sun H, Wang D, Wu J, Shi Y. Investigation of the four cooperative unfolding units existing in the MICAL-1 CH domain. Biophysical Chemistry. 129: 269-78. PMID 17662518 DOI: 10.1016/j.bpc.2007.06.008  0.52
2007 Sun H, Liu J, Zhang J, Shen W, Huang H, Xu C, Dai H, Wu J, Shi Y. Solution structure of BRD7 bromodomain and its interaction with acetylated peptides from histone H3 and H4. Biochemical and Biophysical Research Communications. 358: 435-41. PMID 17498659 DOI: 10.1016/j.bbrc.2007.04.139  0.52
2007 Chen Q, Niu X, Xu Y, Wu J, Shi Y. Solution structure and backbone dynamics of the AF-6 PDZ domain/Bcr peptide complex. Protein Science : a Publication of the Protein Society. 16: 1053-62. PMID 17473018 DOI: 10.1110/ps.062440607  0.48
2007 Zhang J, Li X, Yao B, Shen W, Sun H, Xu C, Wu J, Shi Y. Solution structure of the first SH3 domain of human vinexin and its interaction with vinculin peptides. Biochemical and Biophysical Research Communications. 357: 931-7. PMID 17467669 DOI: 10.1016/j.bbrc.2007.04.029  0.52
2007 Chen J, Zheng H, Liu H, Niu J, Liu J, Shen T, Rui B, Shi Y. Improving metabolic flux estimation via evolutionary optimization for convex solution space. Bioinformatics (Oxford, England). 23: 1115-23. PMID 17332023 DOI: 10.1093/bioinformatics/btm050  0.6
2007 Shen W, Xu C, Huang W, Zhang J, Carlson JE, Tu X, Wu J, Shi Y. Solution structure of human Brg1 bromodomain and its specific binding to acetylated histone tails. Biochemistry. 46: 2100-10. PMID 17274598 DOI: 10.1021/bi0611208  0.6
2007 Wang D, Zhang J, Jin X, Wu J, Shi Y. Investigation of the structural stability of hUBF HMG box 5 by native-state hydrogen exchange. Biochemistry. 46: 1293-302. PMID 17260958 DOI: 10.1021/bi061682r  0.52
2007 Yao B, Zhang J, Dai H, Sun J, Jiao Y, Tang Y, Wu J, Shi Y. Solution structure of the second SH3 domain of human CMS and a newly identified binding site at the C-terminus of c-Cbl. Biochimica Et Biophysica Acta. 1774: 35-43. PMID 17188587 DOI: 10.1016/j.bbapap.2006.09.018  0.52
2006 Dai H, Huang W, Xu J, Yao B, Xiong S, Ding H, Tang Y, Liu H, Wu J, Shi Y. Binding model of human coactosin-like protein with filament actin revealed by mutagenesis. Biochimica Et Biophysica Acta. 1764: 1688-700. PMID 17070122 DOI: 10.1016/j.bbapap.2006.06.017  0.6
2006 Sun H, Dai H, Zhang J, Jin X, Xiong S, Xu J, Wu J, Shi Y. Solution structure of calponin homology domain of Human MICAL-1. Journal of Biomolecular Nmr. 36: 295-300. PMID 17043746 DOI: 10.1007/s10858-006-9062-5  0.52
2006 Li X, Zhang J, Cao Z, Wu J, Shi Y. Solution structure of GOPC PDZ domain and its interaction with the C-terminal motif of neuroligin. Protein Science : a Publication of the Protein Society. 15: 2149-58. PMID 16882988 DOI: 10.1110/ps.062087506  0.52
2006 Xu J, Zhang J, Wang L, Zhou J, Huang H, Wu J, Zhong Y, Shi Y. Solution structure of Urm1 and its implications for the origin of protein modifiers. Proceedings of the National Academy of Sciences of the United States of America. 103: 11625-30. PMID 16864801 DOI: 10.1073/pnas.0604876103  0.52
2006 Fei E, Jia N, Yan M, Ying Z, Sun Q, Wang H, Zhang T, Ma X, Ding H, Yao X, Shi Y, Wang G. SUMO-1 modification increases human SOD1 stability and aggregation. Biochemical and Biophysical Research Communications. 347: 406-12. PMID 16828461 DOI: 10.1016/j.bbrc.2006.06.092  0.32
2006 Zhou D, Sun J, Zhao W, Zhang X, Shi Y, Teng M, Niu L, Dong Y, Liu P. Expression, purification, crystallization and preliminary X-ray characterization of the GRP carbohydrate-recognition domain from Homo sapiens. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 62: 474-6. PMID 16682780 DOI: 10.1107/S1744309106012875  0.4
2006 Xu C, Zhang J, Huang X, Sun J, Xu Y, Tang Y, Wu J, Shi Y, Huang Q, Zhang Q. Solution structure of human peptidyl prolyl isomerase-like protein 1 and insights into its interaction with SKIP. The Journal of Biological Chemistry. 281: 15900-8. PMID 16595688 DOI: 10.1074/jbc.M511155200  0.52
2005 Ding H, Yang Y, Zhang J, Wu J, Liu H, Shi Y. Structural basis for SUMO-E2 interaction revealed by a complex model using docking approach in combination with NMR data. Proteins. 61: 1050-8. PMID 16224784 DOI: 10.1002/prot.20695  0.6
2005 Sun J, Zhang J, Wu F, Xu C, Li S, Zhao W, Wu Z, Wu J, Zhou CZ, Shi Y. Solution structure of Kti11p from Saccharomyces cerevisiae reveals a novel zinc-binding module. Biochemistry. 44: 8801-9. PMID 15952786 DOI: 10.1021/bi0504714  0.52
2005 Fu C, Ahmed K, Ding H, Ding X, Lan J, Yang Z, Miao Y, Zhu Y, Shi Y, Zhu J, Huang H, Yao X. Stabilization of PML nuclear localization by conjugation and oligomerization of SUMO-3. Oncogene. 24: 5401-13. PMID 15940266 DOI: 10.1038/sj.onc.1208714  0.32
2005 Zhang X, Xu Y, Zhang J, Wu J, Shi Y. Structural and dynamic characterization of the acid-unfolded state of hUBF HMG box 1 provides clues for the early events in protein folding. Biochemistry. 44: 8117-25. PMID 15924431 DOI: 10.1021/bi0501939  0.52
2005 Xu C, Zheng P, Shen S, Xu Y, Wei L, Gao H, Wang S, Zhu C, Tang Y, Wu J, Zhang Q, Shi Y. NMR structure and regulated expression in APL cell of human SH3BGRL3. Febs Letters. 579: 2788-94. PMID 15907482 DOI: 10.1016/j.febslet.2005.04.011  0.48
2005 Xu C, Xu Y, Tang Y, Wu J, Shi Y, Huang Q, Zhang Q. Backbone and side chain assignments of human Peptidylprolyl Isomerase Like 1 (hPPIL1). Journal of Biomolecular Nmr. 31: 179-80. PMID 15772761 DOI: 10.1007/s10858-004-8238-0  0.48
2005 Zhang X, Zhang J, Li X, Xu J, Huang H, Chen Q, Wu J, Shi Y. Compact molten globule-like state of hUBF HMG Box1 at extremely low pH. Biochimica Et Biophysica Acta. 1748: 66-73. PMID 15752694 DOI: 10.1016/j.bbapap.2004.12.002  0.52
2005 Ding H, Xu Y, Chen Q, Dai H, Tang Y, Wu J, Shi Y. Solution structure of human SUMO-3 C47S and its binding surface for Ubc9. Biochemistry. 44: 2790-9. PMID 15723523 DOI: 10.1021/bi0477586  0.48
2005 Zhou H, Xu Y, Yang Y, Huang A, Wu J, Shi Y. Solution structure of AF-6 PDZ domain and its interaction with the C-terminal peptides from Neurexin and Bcr. The Journal of Biological Chemistry. 280: 13841-7. PMID 15684424 DOI: 10.1074/jbc.M411065200  0.48
2005 Wang CG, Cai Z, Lu W, Wu J, Xu Y, Shi Y, Chi CW. A novel short-chain peptide BmKX from the Chinese scorpion Buthus martensi Karsch, sequencing, gene cloning and structure determination. Toxicon : Official Journal of the International Society On Toxinology. 45: 309-19. PMID 15683869 DOI: 10.1016/j.toxicon.2004.11.014  0.48
2004 Dai H, Wu J, Xu Y, Yajun T, Husheng D, Shi Y. 1H, 13C and 15N resonance assignments and the secondary structures of human coactosin like protein (hCLP) D123N. Journal of Biomolecular Nmr. 29: 455-6. PMID 15213466 DOI: 10.1023/B:JNMR.0000032550.18424.aa  0.48
2004 Cai Z, Xu C, Xu Y, Lu W, Chi CW, Shi Y, Wu J. Solution structure of BmBKTx1, a new BKCa1 channel blocker from the Chinese scorpion Buthus martensi Karsch. Biochemistry. 43: 3764-71. PMID 15049683 DOI: 10.1021/bi035412+  0.48
2003 Wang J, Zhang Z, Liu H, Shi Y. Quasiequilibrium unfolding thermodynamics of a small protein studied by molecular dynamics simulation with an explicit water model. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 67: 061903. PMID 16241257 DOI: 10.1103/PhysRevE.67.061903  0.6
2003 Zhu J, Zhu Q, Shi Y, Liu H. How well can we predict native contacts in proteins based on decoy structures and their energies? Proteins. 52: 598-608. PMID 12910459 DOI: 10.1002/prot.10444  0.6
2003 Gu W, Wang T, Zhu J, Shi Y, Liu H. Molecular dynamics simulation of the unfolding of the human prion protein domain under low pH and high temperature conditions. Biophysical Chemistry. 104: 79-94. PMID 12834829  0.6
2003 Zhang Z, Shi Y, Liu H. Molecular dynamics simulations of peptides and proteins with amplified collective motions Biophysical Journal. 84: 3583-3593. PMID 12770868  0.6
2003 Yang W, Xu Y, Wu J, Zeng W, Shi Y. Solution structure and DNA binding property of the fifth HMG box domain in comparison with the first HMG box domain in human upstream binding factor. Biochemistry. 42: 1930-8. PMID 12590579 DOI: 10.1021/bi026372x  0.48
2002 Xu Y, Yang W, Wu J, Shi Y. Solution structure of the first HMG box domain in human upstream binding factor. Biochemistry. 41: 5415-20. PMID 11969401  0.48
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