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Marcos M. Sotomayor - Publications

Chemistry and Biochemistry Ohio State University, Columbus, Columbus, OH 
Mechanotransduction - Cellular Adhesion - Structural Biology - Molecular Dynamics Simulations - Protein Biochemistry and Biophysics

48 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Choudhary D, Narui Y, Neel B, Walujkar S, Lotthammer JM, Sudar JC, Nisler C, Wimalasena LN, Klanseck CF, De-la-Torre P, Chen C, Araya-Secchi RR, Tamilselvan E, Sotomayor M. Structuring Inner-ear Mechanotransduction Biophysical Journal. 118. DOI: 10.1016/J.Bpj.2019.11.255  0.6
2020 Lotthammer J, Walujkar S, Wimalasena LN, Sotomayor MM. In-Silico Electrophysiology of Inner-Ear Mechanotransduction Channel Models Biophysical Journal. 118. DOI: 10.1016/J.Bpj.2019.11.1582  0.36
2019 Nicoludis JM, Green AG, Walujkar S, May EJ, Sotomayor M, Marks DS, Gaudet R. Interaction specificity of clustered protocadherins inferred from sequence covariation and structural analysis. Proceedings of the National Academy of Sciences of the United States of America. PMID 31431536 DOI: 10.1073/Pnas.1821063116  0.6
2019 De-la-Torre P, Narui Y, Choudhary D, Araya-Secchi R, Sotomayor M. Structures and Simulations of Membrane Adjacent Fragments of Protocadherin-15 Biophysical Journal. 116. DOI: 10.1016/J.Bpj.2018.11.2480  0.6
2019 Walujkar S, Wimalasena LN, Lotthammer J, Sotomayor M. Molecular Dynamics Simulations of TMC1 Homology Models Biophysical Journal. 116. DOI: 10.1016/J.Bpj.2018.11.1320  0.6
2018 Pan B, Akyuz N, Liu XP, Asai Y, Nist-Lund C, Kurima K, Derfler BH, György B, Limapichat W, Walujkar S, Wimalasena LN, Sotomayor M, Corey DP, Holt JR. TMC1 Forms the Pore of Mechanosensory Transduction Channels in Vertebrate Inner Ear Hair Cells. Neuron. 99: 736-753.e6. PMID 30138589 DOI: 10.1016/J.Neuron.2018.07.033  0.64
2017 Powers RE, Gaudet R, Sotomayor M. A Partial Calcium-Free Linker Confers Flexibility to Inner-Ear Protocadherin-15. Structure (London, England : 1993). PMID 28238533 DOI: 10.1016/J.Str.2017.01.014  0.6
2017 Walujkar SP, Araya-Sechhi R, Sotomayor M. Simulated Forced Unbinding of Clustered Protocadherins Biophysical Journal. 112: 449. DOI: 10.1016/J.Bpj.2016.11.2406  0.6
2017 Neel B, Nisler C, Araya-Secchi R, Sotomayor M. Large Scale Molecular Dynamics Simulations of Three Classical Cadherins Involved in Cell Adhesion Biophysical Journal. 112. DOI: 10.1016/J.Bpj.2016.11.1748  0.6
2016 Cooper SR, Jontes JD, Sotomayor M. Author response: Structural determinants of adhesion by Protocadherin-19 and implications for its role in epilepsy Elife. DOI: 10.7554/Elife.18529.033  0.6
2016 Narui Y, Velez-Cortes F, Johnson Z, Sotomayor M. Steered Molecular Dynamics Simulations of Inner-Ear Cadherins using the Drude Polarizable Force Field Biophysical Journal. 110: 177. DOI: 10.1016/J.Bpj.2015.11.988  0.6
2016 Koussa MA, Ward A, Sotomayor M, Wong WP, Corey DP. Single Molecule Force Spectroscopy of Hair-Cell Tip-Link Proteins Biophysical Journal. 110: 196a. DOI: 10.1016/J.Bpj.2015.11.1090  0.64
2015 Sotomayor M. Modeling cooperative decision situations: the deviation function form and the equilibrium concept International Journal of Game Theory. DOI: 10.1007/s00182-015-0486-6  0.6
2014 Sotomayor M, Gaudet R, Corey DP. Sorting out a promiscuous superfamily: towards cadherin connectomics. Trends in Cell Biology. 24: 524-36. PMID 24794279 DOI: 10.1016/J.Tcb.2014.03.007  0.88
2014 Koussa MA, Sotomayor M, Wong WP. Protocol for sortase-mediated construction of DNA-protein hybrids and functional nanostructures. Methods (San Diego, Calif.). 67: 134-41. PMID 24568941 DOI: 10.1016/J.Ymeth.2014.02.020  0.88
2014 Koussa MA, Sotomayor M, Wong WP, Corey DP. Force Spectroscopy of Tip Link Proteins: A Study of Inner-Ear Biophysics Biophysical Journal. 106: 386a. DOI: 10.1016/J.Bpj.2013.11.2183  0.64
2014 Escalante HJ, Sotomayor M, Montes M, Lopez-Monroy AP. Object recognition with näive Bayes-NN via prototype generation Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8495: 162-171. DOI: 10.1007/978-3-319-07491-7_17  0.6
2014 Bardella FP, Sotomayor M. Redesenho e análise do mercado de admissão aos centros de pós-graduação em economia no brasil à luz da teoria dos jogos: Um experimento natural em desenho de mercados Revista Brasileira De Economia. 68: 425-455.  0.6
2013 Geng R, Sotomayor M, Kinder KJ, Gopal SR, Gerka-Stuyt J, Chen DH, Hardisty-Hughes RE, Ball G, Parker A, Gaudet R, Furness D, Brown SD, Corey DP, Alagramam KN. Noddy, a mouse harboring a missense mutation in protocadherin-15, reveals the impact of disrupting a critical interaction site between tip-link cadherins in inner ear hair cells. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 33: 4395-404. PMID 23467356 DOI: 10.1523/Jneurosci.4514-12.2013  0.88
2013 Sotomayor M. Game theory, introduction to Computational Complexity: Theory, Techniques, and Applications. 1289-1291. DOI: 10.1007/978-1-4614-1800-9_79  0.6
2013 Sotomayor M, Özak Ö. Two-sided matching models Computational Complexity: Theory, Techniques, and Applications. 3234-3257. DOI: 10.1007/978-1-4614-1800-9_200  0.6
2012 Sotomayor M, Weihofen WA, Gaudet R, Corey DP. Structure of a force-conveying cadherin bond essential for inner-ear mechanotransduction. Nature. 492: 128-32. PMID 23135401 DOI: 10.1038/Nature11590  0.88
2012 Inada H, Procko E, Sotomayor M, Gaudet R. Structural and biochemical consequences of disease-causing mutations in the ankyrin repeat domain of the human TRPV4 channel. Biochemistry. 51: 6195-206. PMID 22702953 DOI: 10.1021/Bi300279B  0.88
2012 Gumbart J, Khalili-Araghi F, Sotomayor M, Roux B. Constant electric field simulations of the membrane potential illustrated with simple systems. Biochimica Et Biophysica Acta. 1818: 294-302. PMID 22001851 DOI: 10.1016/J.Bbamem.2011.09.030  0.88
2012 Sotomayor M. A further note on the college admission game International Journal of Game Theory. 41: 179-193. DOI: 10.1007/s00182-011-0278-6  0.6
2012 Cobby N, Wang K, Wang Z, Sotomayor M. OntoRevision: A plug-in system for ontology revision in protégé Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7185: 417-424. DOI: 10.1007/978-3-642-29923-0_32  0.6
2012 Sotomayor M, Wang K, Shen Y, Thornton J. Probabilistic multi-context systems Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7185: 366-375. DOI: 10.1007/978-3-642-29923-0_26  0.6
2012 Yu YC, Shrestha S, Nawroj A, Sotomayor M, Koplin R. Microprocessor control of an ultrasonic scanning device Ifac Proceedings Volumes (Ifac-Papersonline). 11: 406-411.  0.6
2011 Gamini R, Sotomayor M, Chipot C, Schulten K. Cytoplasmic domain filter function in the mechanosensitive channel of small conductance. Biophysical Journal. 101: 80-9. PMID 21723817 DOI: 10.1016/J.Bpj.2011.05.042  0.88
2011 Rodriguez-Martinez M, Seguel J, Sotomayor M, Aleman JP, Rivera J, Greer M. Open911: Experiences with the mobile plus cloud paradigm Proceedings - 2011 Ieee 4th International Conference On Cloud Computing, Cloud 2011. 606-613. DOI: 10.1109/CLOUD.2011.96  0.6
2011 Asenjo D, Lund F, Poblete S, Soto R, Sotomayor M. Characterization of the melting transition in two dimensions at vanishing external pressure using molecular dynamics simulations Physical Review B - Condensed Matter and Materials Physics. 83. DOI: 10.1103/Physrevb.83.174110  0.88
2011 Sotomayor M, Weihofen WA, Gaudet R, Corey DP. Molecular mechanics of tip-link cadherins Aip Conference Proceedings. 1403: 64-69. DOI: 10.1063/1.3658062  0.88
2011 Sotomayor M. The pareto-stability concept is a natural solution concept for discrete matching markets with indifferences International Journal of Game Theory. 40: 631-644. DOI: 10.1007/s00182-010-0259-1  0.6
2010 Sotomayor M, Weihofen WA, Gaudet R, Corey DP. Structural determinants of cadherin-23 function in hearing and deafness. Neuron. 66: 85-100. PMID 20399731 DOI: 10.1016/J.Neuron.2010.03.028  0.88
2009 Lee EH, Hsin J, Sotomayor M, Comellas G, Schulten K. Discovery through the computational microscope. Structure (London, England : 1993). 17: 1295-306. PMID 19836330 DOI: 10.1016/J.Str.2009.09.001  0.88
2009 Khalili-Araghi F, Gumbart J, Wen PC, Sotomayor M, Tajkhorshid E, Schulten K. Molecular dynamics simulations of membrane channels and transporters. Current Opinion in Structural Biology. 19: 128-37. PMID 19345092 DOI: 10.1016/J.Sbi.2009.02.011  0.88
2008 Vásquez V, Sotomayor M, Cordero-Morales J, Schulten K, Perozo E. A structural mechanism for MscS gating in lipid bilayers. Science (New York, N.Y.). 321: 1210-4. PMID 18755978 DOI: 10.1126/Science.1159674  0.88
2008 Vásquez V, Sotomayor M, Cortes DM, Roux B, Schulten K, Perozo E. Three-dimensional architecture of membrane-embedded MscS in the closed conformation. Journal of Molecular Biology. 378: 55-70. PMID 18343404 DOI: 10.1016/J.Jmb.2007.10.086  0.88
2008 Sotomayor M, Schulten K. The allosteric role of the Ca2+ switch in adhesion and elasticity of C-cadherin Biophysical Journal. 94: 4621-4633. PMID 18326636 DOI: 10.1529/Biophysj.107.125591  0.88
2008 Lim BB, Lee EH, Sotomayor M, Schulten K. Molecular basis of fibrin clot elasticity. Structure (London, England : 1993). 16: 449-59. PMID 18294856 DOI: 10.1016/J.Str.2007.12.019  0.88
2007 Sotomayor M, Schulten K. Single-molecule experiments in vitro and in silico Science. 316: 1144-1148. PMID 17525328 DOI: 10.1126/Science.1137591  0.88
2007 Sotomayor M, Vásquez V, Perozo E, Schulten K. Ion conduction through MscS as determined by electrophysiology and simulation. Biophysical Journal. 92: 886-902. PMID 17114233 DOI: 10.1529/Biophysj.106.095232  0.88
2006 Gao M, Sotomayor M, Villa E, Lee EH, Schulten K. Molecular mechanisms of cellular mechanics. Physical Chemistry Chemical Physics : Pccp. 8: 3692-706. PMID 16896432 DOI: 10.1039/B606019F  0.88
2006 Sotomayor M, Van Der Straaten TA, Ravaioli U, Schulten K. Electrostatic properties of the mechanosensitive channel of small conductance MscS Biophysical Journal. 90: 3496-3510. PMID 16513774 DOI: 10.1529/Biophysj.105.080069  0.88
2005 Sotomayor M, Corey DP, Schulten K. In search of the hair-cell gating spring elastic properties of ankyrin and cadherin repeats. Structure (London, England : 1993). 13: 669-82. PMID 15837205 DOI: 10.1016/J.Str.2005.03.001  0.88
2004 Sotomayor M, Schulten K. Molecular dynamics study of gating in the mechanosensitive channel of small conductance MscS Biophysical Journal. 87: 3050-3065. PMID 15339798 DOI: 10.1529/Biophysj.104.046045  0.88
2004 Corey DP, Sotomayor M. Hearing: tightrope act. Nature. 428: 901-3. PMID 15118709 DOI: 10.1038/428901A  0.88
2001 Clarke CJ, Gendrin A, Sotomayor M. The dispersal of circumstellar discs: The role of the ultraviolet switch Monthly Notices of the Royal Astronomical Society. 328: 485-491. DOI: 10.1046/J.1365-8711.2001.04891.X  0.88
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