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Karsten Weis, Ph.D. - Publications

Affiliations: 
1999-2012 Cell Biology Department University of California, Berkeley, Berkeley, CA 
 2013- Cell Biology ETH/Uni Zurich, Zürich, Zürich, Switzerland 
Area:
Nuclear transport
Website:
http://weislab.berkeley.edu/people.html

76 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Hondele M, Sachdev R, Heinrich S, Wang J, Vallotton P, Fontoura BMA, Weis K. DEAD-box ATPases are global regulators of phase-separated organelles. Nature. PMID 31435012 DOI: 10.1038/s41586-019-1502-y  0.76
2019 Linsenmeier M, Kopp MRG, Grigolato F, Liu D, Zürcher D, Hondele M, Weis K, Palmiero UC, Arosio P. Dynamics of synthetic membraneless organelles in microfluidic droplets. Angewandte Chemie (International Ed. in English). PMID 31334587 DOI: 10.1002/anie.201907278  0.76
2019 Vallotton P, Rajoo S, Wojtynek M, Onischenko E, Kralt A, Derrer CP, Weis K. Mapping the native organization of the yeast nuclear pore complex using nuclear radial intensity measurements. Proceedings of the National Academy of Sciences of the United States of America. PMID 31262825 DOI: 10.1073/pnas.1903764116  0.76
2019 Sachdev R, Hondele M, Linsenmeier M, Vallotton P, Mugler CF, Arosio P, Weis K. Pat1 promotes processing body assembly by enhancing the phase separation of the DEAD-box ATPase Dhh1 and RNA. Elife. 8. PMID 30648970 DOI: 10.7554/eLife.41415  0.76
2018 Cheng Z, Mugler CF, Keskin A, Hodapp S, Chan LY, Weis K, Mertins P, Regev A, Jovanovic M, Brar GA. Small and Large Ribosomal Subunit Deficiencies Lead to Distinct Gene Expression Signatures that Reflect Cellular Growth Rate. Molecular Cell. PMID 30503772 DOI: 10.1016/j.molcel.2018.10.032  0.76
2018 Faltova L, Küffner AM, Hondele M, Weis K, Arosio P. Multifunctional Protein Materials and Microreactors using Low Complexity Domains as Molecular Adhesives. Acs Nano. PMID 30216718 DOI: 10.1021/acsnano.8b04304  0.76
2018 Chan LY, Mugler CF, Heinrich S, Vallotton P, Weis K. Non-invasive measurement of mRNA decay reveals translation initiation as the major determinant of mRNA stability. Elife. 7. PMID 30192227 DOI: 10.7554/eLife.32536  0.76
2018 Dultz E, Mancini R, Polles G, Vallotton P, Alber F, Weis K. Quantitative imaging of chromatin decompaction in living cells. Molecular Biology of the Cell. mbcE17110648. PMID 29771637 DOI: 10.1091/mbc.E17-11-0648  0.76
2018 Rajoo S, Vallotton P, Onischenko E, Weis K. Stoichiometry and compositional plasticity of the yeast nuclear pore complex revealed by quantitative fluorescence microscopy. Proceedings of the National Academy of Sciences of the United States of America. PMID 29632211 DOI: 10.1073/pnas.1719398115  0.76
2017 Shechtman Y, Gustavsson AK, Petrov PN, Dultz E, Lee MY, Weis K, Moerner WE. Observation of live chromatin dynamics in cells via 3D localization microscopy using Tetrapod point spread functions. Biomedical Optics Express. 8: 5735-5748. PMID 29296501 DOI: 10.1364/BOE.8.005735  0.52
2017 Onischenko E, Tang JH, Andersen KR, Knockenhauer KE, Vallotton P, Derrer CP, Kralt A, Mugler CF, Chan LY, Schwartz TU, Weis K. Natively Unfolded FG Repeats Stabilize the Structure of the Nuclear Pore Complex. Cell. PMID 29033133 DOI: 10.1016/j.cell.2017.09.033  0.76
2017 Vallotton P, van Oijen AM, Whitchurch CB, Gelfand V, Yeo L, Tsiavaliaris G, Heinrich S, Dultz E, Weis K, Grünwald D. Diatrack particle tracking software: review of applications and performance evaluation. Traffic (Copenhagen, Denmark). PMID 28945316 DOI: 10.1111/tra.12530  0.76
2017 Heinrich S, Sidler CL, Azzalin CM, Weis K. Stem-loop RNA labeling can affect nuclear and cytoplasmic mRNA processing. Rna (New York, N.Y.). 23: 134-141. PMID 28096443 DOI: 10.1261/rna.057786.116  0.76
2017 Heinrich S, Derrer CP, Lari A, Weis K, Montpetit B. Temporal and spatial regulation of mRNA export: Single particle RNA-imaging provides new tools and insights. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. PMID 28052353 DOI: 10.1002/bies.201600124  0.76
2016 Mugler CF, Hondele M, Heinrich S, Sachdev R, Vallotton P, Koek AY, Chan LY, Weis K. ATPase activity of the DEAD-box protein Dhh1 controls processing body formation. Elife. 5. PMID 27692063 DOI: 10.7554/eLife.18746  0.76
2016 Joyner RP, Tang JH, Helenius J, Dultz E, Brune C, Holt LJ, Huet S, Müller DJ, Weis K. A glucose-starvation response regulates the diffusion of macromolecules. Elife. 5. PMID 27003290 DOI: 10.7554/eLife.09376  1
2016 Dultz E, Tjong H, Weider E, Herzog M, Young B, Brune C, Müllner D, Loewen C, Alber F, Weis K. Global reorganization of budding yeast chromosome conformation in different physiological conditions. The Journal of Cell Biology. PMID 26811423 DOI: 10.1083/jcb.201507069  1
2015 Smith C, Lari A, Derrer CP, Ouwehand A, Rossouw A, Huisman M, Dange T, Hopman M, Joseph A, Zenklusen D, Weis K, Grunwald D, Montpetit B. In vivo single-particle imaging of nuclear mRNA export in budding yeast demonstrates an essential role for Mex67p. The Journal of Cell Biology. 211: 1121-30. PMID 26694837 DOI: 10.1083/jcb.201503135  0.56
2015 Lowe AR, Tang JH, Yassif J, Graf M, Huang WY, Groves JT, Weis K, Liphardt JT. Importin-β modulates the permeability of the nuclear pore complex in a Ran-dependent manner. Elife. 4. PMID 25748139 DOI: 10.7554/eLife.04052  1
2014 Backlund MP, Joyner R, Weis K, Moerner WE. Correlations of three-dimensional motion of chromosomal loci in yeast revealed by the double-helix point spread function microscope. Molecular Biology of the Cell. 25: 3619-29. PMID 25318676 DOI: 10.1091/mbc.E14-06-1127  1
2014 Azimi M, Bulat E, Weis K, Mofrad MR. An agent-based model for mRNA export through the nuclear pore complex. Molecular Biology of the Cell. 25: 3643-53. PMID 25253717 DOI: 10.1091/mbc.E14-06-1065  1
2013 Andersen KR, Onischenko E, Tang JH, Kumar P, Chen JZ, Ulrich A, Liphardt JT, Weis K, Schwartz TU. Scaffold nucleoporins Nup188 and Nup192 share structural and functional properties with nuclear transport receptors. Elife. 2: e00745. PMID 23795296 DOI: 10.7554/eLife.00745  0.6
2013 Bird SL, Heald R, Weis K. RanGTP and CLASP1 cooperate to position the mitotic spindle. Molecular Biology of the Cell. 24: 2506-14. PMID 23783028 DOI: 10.1091/mbc.E13-03-0150  1
2012 Montpetit B, Seeliger MA, Weis K. Analysis of DEAD-box proteins in mRNA export. Methods in Enzymology. 511: 239-54. PMID 22713323 DOI: 10.1016/B978-0-12-396546-2.00011-5  1
2012 Montpetit B, Weis K. Cell biology. An alternative route for nuclear mRNP export by membrane budding. Science (New York, N.Y.). 336: 809-10. PMID 22605737 DOI: 10.1126/science.1222243  1
2012 Green EM, Jiang Y, Joyner R, Weis K. A negative feedback loop at the nuclear periphery regulates GAL gene expression. Molecular Biology of the Cell. 23: 1367-75. PMID 22323286 DOI: 10.1091/mbc.E11-06-0547  1
2011 Halpin D, Kalab P, Wang J, Weis K, Heald R. Mitotic spindle assembly around RCC1-coated beads in Xenopus egg extracts. Plos Biology. 9: e1001225. PMID 22215983 DOI: 10.1371/journal.pbio.1001225  1
2011 Carroll JS, Munchel SE, Weis K. The DExD/H box ATPase Dhh1 functions in translational repression, mRNA decay, and processing body dynamics. The Journal of Cell Biology. 194: 527-37. PMID 21844211 DOI: 10.1083/jcb.201007151  1
2011 Munchel SE, Shultzaberger RK, Takizawa N, Weis K. Dynamic profiling of mRNA turnover reveals gene-specific and system-wide regulation of mRNA decay. Molecular Biology of the Cell. 22: 2787-95. PMID 21680716 DOI: 10.1091/mbc.E11-01-0028  1
2011 Soderholm JF, Bird SL, Kalab P, Sampathkumar Y, Hasegawa K, Uehara-Bingen M, Weis K, Heald R. Importazole, a small molecule inhibitor of the transport receptor importin-β. Acs Chemical Biology. 6: 700-8. PMID 21469738 DOI: 10.1021/cb2000296  1
2011 Montpetit B, Thomsen ND, Helmke KJ, Seeliger MA, Berger JM, Weis K. A conserved mechanism of DEAD-box ATPase activation by nucleoporins and InsP6 in mRNA export. Nature. 472: 238-42. PMID 21441902 DOI: 10.1038/nature09862  1
2011 Onischenko E, Weis K. Nuclear pore complex-a coat specifically tailored for the nuclear envelope. Current Opinion in Cell Biology. 23: 293-301. PMID 21296566 DOI: 10.1016/j.ceb.2011.01.002  1
2010 Lowe AR, Siegel JJ, Kalab P, Siu M, Weis K, Liphardt JT. Selectivity mechanism of the nuclear pore complex characterized by single cargo tracking. Nature. 467: 600-3. PMID 20811366 DOI: 10.1038/nature09285  1
2009 Abu-Arish A, Kalab P, Ng-Kamstra J, Weis K, Fradin C. Spatial distribution and mobility of the Ran GTPase in live interphase cells. Biophysical Journal. 97: 2164-78. PMID 19843449 DOI: 10.1016/j.bpj.2009.07.055  1
2009 Dossani ZY, Weirich CS, Erzberger JP, Berger JM, Weis K. Structure of the C-terminus of the mRNA export factor Dbp5 reveals the interaction surface for the ATPase activator Gle1. Proceedings of the National Academy of Sciences of the United States of America. 106: 16251-6. PMID 19805289 DOI: 10.1073/pnas.0902251106  1
2009 Onischenko E, Stanton LH, Madrid AS, Kieselbach T, Weis K. Role of the Ndc1 interaction network in yeast nuclear pore complex assembly and maintenance. The Journal of Cell Biology. 185: 475-91. PMID 19414609 DOI: 10.1083/jcb.200810030  1
2009 Makio T, Stanton LH, Lin CC, Goldfarb DS, Weis K, Wozniak RW. The nucleoporins Nup170p and Nup157p are essential for nuclear pore complex assembly. The Journal of Cell Biology. 185: 459-73. PMID 19414608 DOI: 10.1083/jcb.200810029  1
2007 Blower MD, Feric E, Weis K, Heald R. Genome-wide analysis demonstrates conserved localization of messenger RNAs to mitotic microtubules. The Journal of Cell Biology. 179: 1365-73. PMID 18166649 DOI: 10.1083/jcb.200705163  1
2007 Weis K. The nuclear pore complex: oily spaghetti or gummy bear? Cell. 130: 405-7. PMID 17693250 DOI: 10.1016/j.cell.2007.07.029  1
2006 Weirich CS, Erzberger JP, Flick JS, Berger JM, Thorner J, Weis K. Activation of the DExD/H-box protein Dbp5 by the nuclear-pore protein Gle1 and its coactivator InsP6 is required for mRNA export. Nature Cell Biology. 8: 668-76. PMID 16783364 DOI: 10.1038/ncb1424  1
2006 Madrid AS, Mancuso J, Cande WZ, Weis K. The role of the integral membrane nucleoporins Ndc1p and Pom152p in nuclear pore complex assembly and function. The Journal of Cell Biology. 173: 361-71. PMID 16682526 DOI: 10.1083/jcb.200506199  1
2006 Kaláb P, Pralle A, Isacoff EY, Heald R, Weis K. Analysis of a RanGTP-regulated gradient in mitotic somatic cells. Nature. 440: 697-701. PMID 16572176 DOI: 10.1038/nature04589  1
2006 Madrid AS, Weis K. Nuclear transport is becoming crystal clear. Chromosoma. 115: 98-109. PMID 16421734 DOI: 10.1007/s00412-005-0043-3  1
2006 Soderholm J, Uehara-Bingen M, Weis K, Heald R. Challenges facing the biologist doing chemical genetics. Nature Chemical Biology. 2: 55-8. PMID 16421579 DOI: 10.1038/nchembio0206-55  1
2005 Maresca TJ, Niederstrasser H, Weis K, Heald R. Xnf7 contributes to spindle integrity through its microtubule-bundling activity. Current Biology : Cb. 15: 1755-61. PMID 16213823 DOI: 10.1016/j.cub.2005.08.049  1
2005 Santama N, Ogg SC, Malekkou A, Zographos SE, Weis K, Lamond AI. Characterization of hCINAP, a novel coilin-interacting protein encoded by a transcript from the transcription factor TAFIID32 locus. The Journal of Biological Chemistry. 280: 36429-41. PMID 16079131 DOI: 10.1074/jbc.M501982200  1
2005 Blower MD, Nachury M, Heald R, Weis K. A Rae1-containing ribonucleoprotein complex is required for mitotic spindle assembly. Cell. 121: 223-34. PMID 15851029 DOI: 10.1016/j.cell.2005.02.016  1
2005 Brune C, Munchel SE, Fischer N, Podtelejnikov AV, Weis K. Yeast poly(A)-binding protein Pab1 shuttles between the nucleus and the cytoplasm and functions in mRNA export. Rna (New York, N.Y.). 11: 517-31. PMID 15769879 DOI: 10.1261/rna.7291205  1
2005 Burggraf B, Weis K, Bomans DJ. The environment of LBVs in M33 Aip Conference Proceedings. 783: 33-36. DOI: 10.1063/1.2034963  0.01
2004 Weirich CS, Erzberger JP, Berger JM, Weis K. The N-terminal domain of Nup159 forms a beta-propeller that functions in mRNA export by tethering the helicase Dbp5 to the nuclear pore. Molecular Cell. 16: 749-60. PMID 15574330 DOI: 10.1016/j.molcel.2004.10.032  1
2004 Zeitler B, Weis K. The FG-repeat asymmetry of the nuclear pore complex is dispensable for bulk nucleocytoplasmic transport in vivo. The Journal of Cell Biology. 167: 583-90. PMID 15557115 DOI: 10.1083/jcb.200407156  1
2003 Weis K. Regulating access to the genome: nucleocytoplasmic transport throughout the cell cycle. Cell. 112: 441-51. PMID 12600309 DOI: 10.1016/S0092-8674(03)00082-5  1
2002 Weis K. Nucleocytoplasmic transport: cargo trafficking across the border. Current Opinion in Cell Biology. 14: 328-35. PMID 12067655 DOI: 10.1016/S0955-0674(02)00337-X  1
2002 Nilsson J, Weis K, Kjems J. The C-terminal extension of the small GTPase Ran is essential for defining the GDP-bound form. Journal of Molecular Biology. 318: 583-93. PMID 12051861 DOI: 10.1016/S0022-2836(02)00040-2  1
2002 Fischer N, Weis K. The DEAD box protein Dhh1 stimulates the decapping enzyme Dcp1. The Embo Journal. 21: 2788-97. PMID 12032091 DOI: 10.1093/emboj/21.11.2788  1
2002 Kalab P, Weis K, Heald R. Visualization of a Ran-GTP gradient in interphase and mitotic Xenopus egg extracts. Science (New York, N.Y.). 295: 2452-6. PMID 11923538 DOI: 10.1126/science.1068798  1
2001 Fackler OT, Peterlin BM, Weis K. Lessons from HIV: movement of macromolecules inside the cell. Current Molecular Medicine. 1: 1-7. PMID 11899237  1
2001 Ström AC, Weis K. Importin-beta-like nuclear transport receptors. Genome Biology. 2: REVIEWS3008. PMID 11423015  1
2001 Maurer P, Redd M, Solsbacher J, Bischoff FR, Greiner M, Podtelejnikov AV, Mann M, Stade K, Weis K, Schlenstedt G. The nuclear export receptor Xpo1p forms distinct complexes with NES transport substrates and the yeast Ran binding protein 1 (Yrb1p). Molecular Biology of the Cell. 12: 539-49. PMID 11251069  1
2001 Nachury MV, Maresca TJ, Salmon WC, Waterman-Storer CM, Heald R, Weis K. Importin beta is a mitotic target of the small GTPase Ran in spindle assembly. Cell. 104: 95-106. PMID 11163243 DOI: 10.1016/S0092-8674(01)00194-5  1
2000 Weis K. Identification, analysis, and use of nuclear export signals in Saccharomyces cerevisiae. Methods in Enzymology. 327: 297-304. PMID 11044992 DOI: 10.1016/S0076-6879(00)27285-6  1
2000 Heald R, Weis K. Spindles get the ran around. Trends in Cell Biology. 10: 1-4. PMID 10603469 DOI: 10.1016/S0962-8924(99)01691-8  1
1999 Nachury MV, Weis K. The direction of transport through the nuclear pore can be inverted. Proceedings of the National Academy of Sciences of the United States of America. 96: 9622-7. PMID 10449743 DOI: 10.1073/pnas.96.17.9622  1
1999 Takizawa CG, Weis K, Morgan DO. Ran-independent nuclear import of cyclin B1-Cdc2 by importin beta. Proceedings of the National Academy of Sciences of the United States of America. 96: 7938-43. PMID 10393926 DOI: 10.1073/pnas.96.14.7938  1
1999 Cingolani G, Petosa C, Weis K, Müller CW. Structure of importin-beta bound to the IBB domain of importin-alpha. Nature. 399: 221-9. PMID 10353244 DOI: 10.1038/20367  1
1998 Jenkins Y, McEntee M, Weis K, Greene WC. Characterization of HIV-1 vpr nuclear import: analysis of signals and pathways. The Journal of Cell Biology. 143: 875-85. PMID 9817747 DOI: 10.1083/jcb.143.4.875  1
1998 Weis K. Importins and exportins: how to get in and out of the nucleus. Trends in Biochemical Sciences. 23: 185-9. PMID 9612083 DOI: 10.1016/S0968-0004(98)01204-3  1
1998 Nachury MV, Ryder UW, Lamond AI, Weis K. Cloning and characterization of hSRP1 gamma, a tissue-specific nuclear transport factor. Proceedings of the National Academy of Sciences of the United States of America. 95: 582-7. PMID 9435235 DOI: 10.1073/pnas.95.2.582  1
1997 Stade K, Ford CS, Guthrie C, Weis K. Exportin 1 (Crm1p) is an essential nuclear export factor. Cell. 90: 1041-50. PMID 9323132 DOI: 10.1016/S0092-8674(00)80370-0  1
1996 Weis K, Dingwall C, Lamond AI. Characterization of the nuclear protein import mechanism using Ran mutants with altered nucleotide binding specificities. The Embo Journal. 15: 7120-8. PMID 9003787  1
1996 Palacios I, Weis K, Klebe C, Mattaj IW, Dingwall C. RAN/TC4 mutants identify a common requirement for snRNP and protein import into the nucleus. The Journal of Cell Biology. 133: 485-94. PMID 8636225 DOI: 10.1083/jcb.133.3.485  1
1996 Weis K, Ryder U, Lamond AI. The conserved amino-terminal domain of hSRP1 alpha is essential for nuclear protein import. The Embo Journal. 15: 1818-25. PMID 8617227  1
1995 Bohmann K, Ferreira J, Santama N, Weis K, Lamond AI. Molecular analysis of the coiled body. Journal of Cell Science. Supplement. 19: 107-13. PMID 8655641  1
1995 Weis K, Mattaj IW, Lamond AI. Identification of hSRP1 alpha as a functional receptor for nuclear localization sequences. Science (New York, N.Y.). 268: 1049-53. PMID 7754385  1
1994 Weis K, Rambaud S, Lavau C, Jansen J, Carvalho T, Carmo-Fonseca M, Lamond A, Dejean A. Retinoic acid regulates aberrant nuclear localization of PML-RAR alpha in acute promyelocytic leukemia cells. Cell. 76: 345-56. PMID 8293468 DOI: 10.1016/0092-8674(94)90341-7  1
1994 Weis K, Griffiths G, Lamond AI. The endoplasmic reticulum calcium-binding protein of 55 kDa is a novel EF-hand protein retained in the endoplasmic reticulum by a carboxyl-terminal His-Asp-Glu-Leu motif. The Journal of Biological Chemistry. 269: 19142-50. PMID 8034671  1
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