Young-Mo Kim - Publications

Pacific Northwest National Laboratory, USA 
Mass spectrometry, Metabolomics, Environmental Chemistry, Chromatography, Environmental microbiology

89 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Yang R, Wang J, Zhu L, Wang J, Yang L, Mao S, Conkle JL, Chen Y, Kim YM. Effects of interaction between enrofloxacin and copper on soil enzyme activity and evaluation of comprehensive toxicity. Chemosphere. 268: 129208. PMID 33352514 DOI: 10.1016/j.chemosphere.2020.129208  0.56
2020 Kim M, Ligaray M, Kwon YS, Kim S, Baek S, Pyo J, Baek G, Shin J, Kim J, Lee C, Kim YM, Cho KH. Designing a marine outfall to reduce microbial risk on a recreational beach: Field experiment and modeling. Journal of Hazardous Materials. 124587. PMID 33303212 DOI: 10.1016/j.jhazmat.2020.124587  0.64
2020 Suskind DL, Lee D, Kim YM, Wahbeh G, Singh N, Braly K, Nuding M, Nicora CD, Purvine SO, Lipton MS, Jansson JK, Nelson WC. The Specific Carbohydrate Diet and Diet Modification as Induction Therapy for Pediatric Crohn's Disease: A Randomized Diet Controlled Trial. Nutrients. 12. PMID 33291229 DOI: 10.3390/nu12123749  1
2020 Park JO, Park YM, Jeong WJ, Shin YS, Hong YT, Choi IJ, Kim JW, Woo SH, Kim YS, Chang JW, Kim MS, Jung KY, Ahn SH, Kim CH, Hong KH, ... ... Kim YM, et al. Survival benefits from surgery of stage IVa head and neck squamous cell carcinoma: A multi-institutional analysis of 1033 cases. Clinical and Experimental Otorhinolaryngology. PMID 33081440 DOI: 10.21053/ceo.2020.01732  0.64
2020 Wen S, Liu C, Wang Y, Xue Y, Wang X, Wang J, Xia X, Kim YM. Oxidative stress and DNA damage in earthworm (Eisenia fetida) induced by triflumezopyrim exposure. Chemosphere. 264: 128499. PMID 33049500 DOI: 10.1016/j.chemosphere.2020.128499  0.56
2020 Zhang W, Xia X, Wang J, Zhu L, Wang J, Wang G, Chen Y, Kim YM. Oxidative stress and genotoxicity of nitenpyram to earthworms (Eisenia foetida). Chemosphere. 264: 128493. PMID 33039690 DOI: 10.1016/j.chemosphere.2020.128493  0.56
2020 Chaput G, Billings AF, DeDiego L, Orellana R, Adkins JN, Nicora CD, Kim YM, Chu R, Simmons B, DeAngelis KM. Lignin induced iron reduction by novel sp., Tolumonas lignolytic BRL6-1. Plos One. 15: e0233823. PMID 32941430 DOI: 10.1371/journal.pone.0233823  1
2020 Yan X, Wang J, Zhu L, Wang J, Li S, Kim YM. Oxidative stress, growth inhibition, and DNA damage in earthworms induced by the combined pollution of typical neonicotinoid insecticides and heavy metals. The Science of the Total Environment. 754: 141873. PMID 32911142 DOI: 10.1016/j.scitotenv.2020.141873  0.56
2020 Kim JM, Choi ME, Kim SK, Kim JW, Kim YM, Choi JS. Keratinocyte Growth Factor-1 Protects Radioiodine-Induced Salivary Gland Dysfunction in Mice. International Journal of Environmental Research and Public Health. 17. PMID 32878050 DOI: 10.3390/ijerph17176322  0.84
2020 Jang HM, Lee J, Shin SG, Shin J, Kim YM. Corrigendum to "Comparing the fate of antibiotic resistance genes in two full-scale thermophilic anaerobic digestion plants treating food wastewater" [Bioresour. Technol. 312 (2020) 123577]. Bioresource Technology. 317: 124028. PMID 32854058 DOI: 10.1016/j.biortech.2020.124028  0.64
2020 Jang J, Kim M, Baek S, Shin J, Shin J, Shin SG, Kim YM, Cho KH. Hydrometeorological Influence on Antibiotic-Resistance Genes (ARGs) and Bacterial Community at a Recreational Beach in Korea. Journal of Hazardous Materials. 403: 123599. PMID 32791479 DOI: 10.1016/j.jhazmat.2020.123599  0.64
2020 Song MJ, Choi S, Bae WB, Lee J, Han H, Kim DD, Kwon M, Myung J, Kim YM, Yoon S. Identification of primary effecters of NO emissions from full-scale biological nitrogen removal systems using random forest approach. Water Research. 184: 116144. PMID 32731040 DOI: 10.1016/j.watres.2020.116144  0.64
2020 Choi JS, Heang Oh S, Kim YM, Lim JY. Hyaluronic Acid/Alginate Hydrogel Containing Hepatocyte Growth Factor and Promotion of Vocal Fold Wound Healing. Tissue Engineering and Regenerative Medicine. PMID 32676953 DOI: 10.1007/s13770-020-00280-6  0.84
2020 McClure RS, Lee JY, Chowdhury TR, Bottos EM, White RA, Kim YM, Nicora CD, Metz TO, Hofmockel KS, Jansson JK, Song HS. Integrated network modeling approach defines key metabolic responses of soil microbiomes to perturbations. Scientific Reports. 10: 10882. PMID 32616808 DOI: 10.1038/s41598-020-67878-7  1
2020 Jang HM, Lee J, Shin SG, Shin J, Kim YM. Comparing the fate of antibiotic resistance genes in two full-scale thermophilic anaerobic digestion plants treating food wastewater. Bioresource Technology. 312: 123577. PMID 32531733 DOI: 10.1016/j.biortech.2020.123577  0.64
2020 Mao JH, Kim YM, Zhou YX, Hu D, Zhong C, Chang H, Brislawn CJ, Fansler S, Langley S, Wang Y, Peisl BYL, Celniker SE, Threadgill DW, Wilmes P, Orr G, et al. Correction to: Genetic and metabolic links between the murine microbiome and memory. Microbiome. 8: 73. PMID 32466793 DOI: 10.1186/s40168-020-00870-5  1
2020 Mao JH, Kim YM, Zhou YX, Hu D, Zhong C, Chang H, Brislawn C, Langley S, Wang Y, Peisl BYL, Celniker SE, Threadgill DW, Wilmes P, Orr G, Metz TO, et al. Genetic and metabolic links between the murine microbiome and memory. Microbiome. 8: 53. PMID 32299497 DOI: 10.1186/s40168-020-00817-w  1
2020 Choi S, Sim W, Jang D, Yoon Y, Ryu J, Oh J, Woo JS, Kim YM, Lee Y. Antibiotics in coastal aquaculture waters: Occurrence and elimination efficiency in oxidative water treatment processes. Journal of Hazardous Materials. 396: 122585. PMID 32298861 DOI: 10.1016/j.jhazmat.2020.122585  0.44
2020 Ilhan ZE, DiBaise JK, Dautel SE, Isern NG, Kim YM, Hoyt DW, Schepmoes AA, Brewer HM, Weitz KK, Metz TO, Crowell MD, Kang DW, Rittmann BE, Krajmalnik-Brown R. Temporospatial shifts in the human gut microbiome and metabolome after gastric bypass surgery. Npj Biofilms and Microbiomes. 6: 12. PMID 32170068 DOI: 10.1038/s41522-020-0122-5  1
2020 Nicora CD, Sims AC, Bloodsworth KJ, Kim YM, Moore RJ, Kyle JE, Nakayasu ES, Metz TO. Metabolite, Protein, and Lipid Extraction (MPLEx): A Method that Simultaneously Inactivates Middle East Respiratory Syndrome Coronavirus and Allows Analysis of Multiple Host Cell Components Following Infection. Methods in Molecular Biology (Clifton, N.J.). 2099: 173-194. PMID 31883096 DOI: 10.1007/978-1-0716-0211-9_14  1
2019 Daly P, Peng M, Mitchell HD, Kim YM, Ansong C, Brewer H, de Gijsel P, Lipton MS, Markillie LM, Nicora CD, Orr G, Wiebenga A, Hildén KS, Kabel MA, Baker SE, et al. Colonies of the fungus Aspergillus niger are highly differentiated to adapt to local carbon source variation. Environmental Microbiology. PMID 31876091 DOI: 10.1111/1462-2920.14907  1
2019 Choi JS, Cho BH, Kim HJ, Kim YM, Jang JH. Identification of new genes of pleomorphic adenoma. Medicine. 98: e18468. PMID 31861025 DOI: 10.1097/MD.0000000000018468  0.84
2019 Kim JW, Kim JM, Choi ME, Kim SK, Kim YM, Choi JS. Does salivary function decrease in proportion to radioiodine dose? The Laryngoscope. PMID 31765488 DOI: 10.1002/lary.28342  0.84
2019 Webb-Robertson BM, Stratton KG, Kyle JE, Kim YM, Bramer LM, Waters KM, Koeller D, Metz TO. Statistically-driven Metabolite and Lipid Profiling of Patients from the Undiagnosed Diseases Network. Analytical Chemistry. PMID 31742994 DOI: 10.1021/acs.analchem.9b03522  1
2019 Kim YM, Markurt T, Kim Y, Zupancic M, Shin J, Albrecht M, Char K. Interface polarization model for a 2-dimensional electron gas at the BaSnO/LaInO interface. Scientific Reports. 9: 16202. PMID 31700133 DOI: 10.1038/s41598-019-52772-8  0.64
2019 Kim YM, Snijders AM, Brislawn CJ, Stratton KG, Zink EM, Fansler SJ, Metz TO, Mao JH, Jansson JK. Light-Stress Influences the Composition of the Murine Gut Microbiome, Memory Function, and Plasma Metabolome. Frontiers in Molecular Biosciences. 6: 108. PMID 31681796 DOI: 10.3389/fmolb.2019.00108  1
2019 Kim JW, Kim JM, Choi ME, Kim SK, Kim YM, Choi JS. Adipose-derived mesenchymal stem cells regenerate radioiodine-induced salivary gland damage in a murine model. Scientific Reports. 9: 15752. PMID 31673085 DOI: 10.1038/s41598-019-51775-9  0.84
2019 Kim YM, Kim JW, Park IS, Choi JS. Tongue base varix as a source of oral bleeding: A case report. Medicine. 98: e16987. PMID 31626079 DOI: 10.1097/MD.0000000000016987  0.84
2019 Roy Chowdhury T, Lee JY, Bottos EM, Brislawn CJ, White RA, Bramer LM, Brown J, Zucker JD, Kim YM, Jumpponen A, Rice CW, Fansler SJ, Metz TO, McCue LA, Callister SJ, et al. Metaphenomic Responses of a Native Prairie Soil Microbiome to Moisture Perturbations. Msystems. 4. PMID 31186334 DOI: 10.1128/mSystems.00061-19  1
2019 Sharon G, Cruz NJ, Kang DW, Gandal MJ, Wang B, Kim YM, Zink EM, Casey CP, Taylor BC, Lane CJ, Bramer LM, Isern NG, Hoyt DW, Noecker C, Sweredoski MJ, et al. Human Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice. Cell. 177: 1600-1618.e17. PMID 31150625 DOI: 10.1016/j.cell.2019.05.004  1
2019 Ceja-Navarro JA, Karaoz U, Bill M, Hao Z, White RA, Arellano A, Ramanculova L, Filley TR, Berry TD, Conrad ME, Blackwell M, Nicora CD, Kim YM, Reardon PN, Lipton MS, et al. Gut anatomical properties and microbial functional assembly promote lignocellulose deconstruction and colony subsistence of a wood-feeding beetle. Nature Microbiology. PMID 30858574 DOI: 10.1038/s41564-019-0384-y  1
2019 Rivas-Ubach A, Liu Y, Steiner AL, Sardans J, Tfaily MM, Kulkarni G, Kim YM, Bourrianne E, Paša-Tolić L, Peñuelas J, Guenther A. Atmo-ecometabolomics: a novel atmospheric particle chemical characterization methodology for ecological research. Environmental Monitoring and Assessment. 191: 78. PMID 30649631 DOI: 10.1007/s10661-019-7205-x  1
2019 Park CM, Kim YM, Kim KH, Wang D, Su C, Yoon Y. Potential utility of graphene-based nano spinel ferrites as adsorbent and photocatalyst for removing organic/inorganic contaminants from aqueous solutions: A mini review. Chemosphere. 221: 392-402. PMID 30641380 DOI: 10.1016/j.chemosphere.2019.01.063  0.44
2018 Daly P, Casado López S, Peng M, Lancefield CS, Purvine SO, Kim YM, Zink EM, Dohnalkova A, Singan VR, Lipzen A, Dilworth D, Wang M, Ng V, Robinson E, Orr G, et al. Dichomitus squalens partially tailors its molecular responses to the composition of solid wood. Environmental Microbiology. PMID 30246402 DOI: 10.1111/1462-2920.14416  1
2018 Nicora CD, Burnum-Johnson KE, Nakayasu ES, Casey CP, White RA, Roy Chowdhury T, Kyle JE, Kim YM, Smith RD, Metz TO, Jansson JK, Baker ES. The MPLEx Protocol for Multi-omic Analyses of Soil Samples. Journal of Visualized Experiments : Jove. PMID 29912205 DOI: 10.3791/57343  1
2018 Cole JK, Morton BR, Cardamone HC, Lake HRR, Dohnalkova AC, Kim YM, Kyle JE, Maezato Y, Dana KL, Metz TO, Romine MF, Nelson WC, Lindemann SR. Corrigendum: Saliniramus fredricksonii gen. nov., sp. nov., a heterotrophic halophile isolated from Hot Lake, Washington, a member of a novel lineage (Salinarimonadaceae fam. nov.) within the order Rhizobiales, and reclassification of the genus Salinarimonas Liu et al. 2010 into Salinarimonadaceae. International Journal of Systematic and Evolutionary Microbiology. 68: 2116-2123. PMID 29855404 DOI: 10.1099/ijsem.0.002807  1
2018 Xu L, Naylor D, Dong Z, Simmons T, Pierroz G, Hixson KK, Kim YM, Zink EM, Engbrecht KM, Wang Y, Gao C, DeGraaf S, Madera MA, Sievert JA, Hollingsworth J, et al. Drought delays development of the sorghum root microbiome and enriches for monoderm bacteria. Proceedings of the National Academy of Sciences of the United States of America. PMID 29666229 DOI: 10.1073/pnas.1717308115  1
2018 Cole JK, Morton BR, Cardamone HC, Lake HRR, Dohnalkova AC, Kim YM, Kyle JE, Maezato Y, Dana KL, Metz TO, Romine MF, Nelson WC, Lindemann SR. Salinivirga fredricksonii gen. nov., sp. nov., a heterotrophic halophile isolated from a photosynthetic mat, a member of a novel lineage (Salinarimonadaceae fam. nov.) within the order Rhizobiales, and reclassification of the genus Salinarimonas Liu et al. 2010 into Salinarimonadaceae. International Journal of Systematic and Evolutionary Microbiology. PMID 29580321 DOI: 10.1099/ijsem.0.002715  1
2018 Khosravi C, Battaglia E, Kun RS, Dalhuijsen S, Visser J, Aguilar-Pontes MV, Zhou M, Heyman HM, Kim YM, Baker SE, de Vries RP. Blocking hexose entry into glycolysis activates alternative metabolic conversion of these sugars and upregulates pentose metabolism in Aspergillus nidulans. Bmc Genomics. 19: 214. PMID 29566661 DOI: 10.1186/s12864-018-4609-x  1
2018 Moghieb A, Clair G, Mitchell H, Kitzmiller JA, Zink EM, Kim YM, Petyuk V, Shukla AK, Moore RJ, Metz TO, Carson JP, McDermott JE, Corley RA, Whitsett JA, Ansong C. Time-resolved Proteome Profiling of Normal Lung Development. American Journal of Physiology. Lung Cellular and Molecular Physiology. PMID 29516783 DOI: 10.1152/ajplung.00316.2017  1
2018 Wu J, Sabag-Daigle A, Borton MA, Kop LFM, Szkoda BE, Deatherage Kaiser BL, Lindemann SR, Renslow RS, Wei S, Nicora CD, Weitz KK, Kim YM, Adkins JN, Metz TO, Boyaka P, et al. -mediated inflammation eliminates competitors for fructose-asparagine in the gut. Infection and Immunity. PMID 29483291 DOI: 10.1128/IAI.00945-17  1
2018 Oláhová M, Yoon WH, Thompson K, Jangam S, Fernandez L, Davidson JM, Kyle JE, Grove ME, Fisk DG, Kohler JN, Holmes M, Dries AM, Huang Y, Zhao C, Contrepois K, ... ... Kim YM, et al. Biallelic Mutations in ATP5F1D, which Encodes a Subunit of ATP Synthase, Cause a Metabolic Disorder. American Journal of Human Genetics. PMID 29478781 DOI: 10.1016/j.ajhg.2018.01.020  1
2017 Eisfeld AJ, Halfmann PJ, Wendler JP, Kyle JE, Burnum-Johnson KE, Peralta Z, Maemura T, Walters KB, Watanabe T, Fukuyama S, Yamashita M, Jacobs JM, Kim YM, Casey CP, Stratton KG, et al. Multi-platform 'Omics Analysis of Human Ebola Virus Disease Pathogenesis. Cell Host & Microbe. PMID 29154144 DOI: 10.1016/j.chom.2017.10.011  1
2017 Kerkhoven EJ, Kim YM, Wei S, Nicora CD, Fillmore TL, Purvine SO, Webb-Robertson BJ, Smith RD, Baker SE, Metz TO, Nielsen J. Leucine Biosynthesis Is Involved in Regulating High Lipid Accumulation in Yarrowia lipolytica. Mbio. 8. PMID 28634240 DOI: 10.1128/mBio.00857-17  1
2017 Bernstein HC, McClure RS, Thiel V, Sadler NC, Kim YM, Chrisler WB, Hill EA, Bryant DA, Romine MF, Jansson JK, Fredrickson JK, Beliaev AS. Indirect Interspecies Regulation: Transcriptional and Physiological Responses of a Cyanobacterium to Heterotrophic Partnership. Msystems. 2. PMID 28289730 DOI: 10.1128/mSystems.00181-16  1
2017 Dautel SE, Kyle JE, Clair G, Sontag RL, Weitz KK, Shukla AK, Nguyen SN, Kim YM, Zink EM, Luders T, Frevert CW, Gharib SA, Laskin J, Carson JP, Metz TO, et al. Lipidomics reveals dramatic lipid compositional changes in the maturing postnatal lung. Scientific Reports. 7: 40555. PMID 28145528 DOI: 10.1038/srep40555  1
2017 Romine MF, Rodionov DA, Maezato Y, Anderson LN, Nandhikonda P, Rodionova IA, Carre A, Li X, Xu C, Clauss TR, Kim YM, Metz TO, Wright AT. Elucidation of roles for vitamin B12 in regulation of folate, ubiquinone, and methionine metabolism. Proceedings of the National Academy of Sciences of the United States of America. PMID 28137868 DOI: 10.1073/pnas.1612360114  1
2017 Burnum-Johnson KE, Kyle JE, Eisfeld AJ, Casey CP, Stratton KG, Gonzalez JF, Habyarimana F, Negretti NM, Sims AC, Chauhan S, Thackray LB, Halfmann PJ, Walters KB, Kim YM, Zink EM, et al. MPLEx: a method for simultaneous pathogen inactivation and extraction of samples for multi-omics profiling. The Analyst. PMID 28091625 DOI: 10.1039/c6an02486f  1
2016 Zhang X, Romm M, Zheng X, Zink EM, Kim YM, Burnum-Johnson KE, Orton DJ, Apffel A, Ibrahim YM, Monroe ME, Moore RJ, Smith JN, Ma J, Renslow RS, Thomas DG, et al. SPE-IMS-MS: An automated platform for sub-sixty second surveillance of endogenous metabolites and xenobiotics in biofluids. Clinical Mass Spectrometry (Del Mar, Calif.). 2: 1-10. PMID 29276770 DOI: 10.1016/j.clinms.2016.11.002  1
2016 Kyle JE, Casey CP, Stratton KG, Zink EM, Kim YM, Zheng X, Monroe ME, Weitz KK, Bloodsworth KJ, Orton DJ, Ibrahim YM, Moore RJ, Lee CG, Pedersen C, Orwoll E, et al. Comparing Identified and Statistically Significant Lipids and Polar Metabolites in 15-Year Old Serum and Dried Blood Spot Samples for Longitudinal Studies. Rapid Communications in Mass Spectrometry : Rcm. PMID 27958645 DOI: 10.1002/rcm.7808  1
2016 Snijders AM, Langley SA, Kim YM, Brislawn CJ, Noecker C, Zink EM, Fansler SJ, Casey CP, Miller DR, Huang Y, Karpen GH, Celniker SE, Brown JB, Borenstein E, Jansson JK, et al. Influence of early life exposure, host genetics and diet on the mouse gut microbiome and metabolome. Nature Microbiology. 2: 16221. PMID 27892936 DOI: 10.1038/nmicrobiol.2016.221  1
2016 Nakayasu ES, Nicora CD, Sims AC, Burnum-Johnson KE, Kim YM, Kyle JE, Matzke MM, Shukla AK, Chu RK, Schepmoes AA, Jacobs JM, Baric RS, Webb-Robertson BJ, Smith RD, Metz TO. MPLEx: a Robust and Universal Protocol for Single-Sample Integrative Proteomic, Metabolomic, and Lipidomic Analyses. Msystems. 1. PMID 27822525 DOI: 10.1128/mSystems.00043-16  1
2016 Rivas-Ubach A, Hódar JA, Sardans J, Kyle JE, Kim YM, Oravec M, Urban O, Guenther A, Peñuelas J. Are the metabolomic responses to folivory of closely related plant species linked to macroevolutionary and plant-folivore coevolutionary processes? Ecology and Evolution. 6: 4372-4386. PMID 27386082 DOI: 10.1002/ece3.2206  1
2016 Pomraning KR, Kim YM, Nicora CD, Chu RK, Bredeweg EL, Purvine SO, Hu D, Metz TO, Baker SE. Multi-omics analysis reveals regulators of the response to nitrogen limitation in Yarrowia lipolytica. Bmc Genomics. 17: 138. PMID 26911370 DOI: 10.1186/s12864-016-2471-2  1
2016 Tisoncik-Go J, Gasper DJ, Kyle JE, Eisfeld AJ, Selinger C, Hatta M, Morrison J, Korth MJ, Zink EM, Kim YM, Schepmoes AA, Nicora CD, Purvine SO, Weitz KK, Peng X, et al. Integrated Omics Analysis of Pathogenic Host Responses during Pandemic H1N1 Influenza Virus Infection: The Crucial Role of Lipid Metabolism. Cell Host & Microbe. 19: 254-66. PMID 26867183 DOI: 10.1016/j.chom.2016.01.002  1
2015 Lovelace ES, Wagoner J, MacDonald J, Bammler T, Bruckner J, Brownell J, Beyer RP, Zink EM, Kim YM, Kyle JE, Webb-Robertson BJ, Waters KM, Metz TO, Farin F, Oberlies NH, et al. Silymarin Suppresses Cellular Inflammation By Inducing Reparative Stress Signaling. Journal of Natural Products. 78: 1990-2000. PMID 26186142 DOI: 10.1021/acs.jnatprod.5b00288  1
2015 Kim YM, Nowack S, Olsen MT, Becraft ED, Wood JM, Thiel V, Klapper I, Kühl M, Fredrickson JK, Bryant DA, Ward DM, Metz TO. Diel metabolomics analysis of a hot spring chlorophototrophic microbial mat leads to new hypotheses of community member metabolisms. Frontiers in Microbiology. 6: 209. PMID 25941514 DOI: 10.3389/fmicb.2015.00209  1
2015 Pomraning KR, Wei S, Karagiosis SA, Kim YM, Dohnalkova AC, Arey BW, Bredeweg EL, Orr G, Metz TO, Baker SE. Comprehensive Metabolomic, Lipidomic and Microscopic Profiling of Yarrowia lipolytica during Lipid Accumulation Identifies Targets for Increased Lipogenesis. Plos One. 10: e0123188. PMID 25905710 DOI: 10.1371/journal.pone.0123188  1
2014 Boaro AA, Kim YM, Konopka AE, Callister SJ, Ahring BK. Integrated 'omics analysis for studying the microbial community response to a pH perturbation of a cellulose-degrading bioreactor culture. Fems Microbiology Ecology. 90: 802-15. PMID 25290699 DOI: 10.1111/1574-6941.12435  1
2014 Webb-Robertson BJ, Kim YM, Zink EM, Hallaian KA, Zhang Q, Madupu R, Waters KM, Metz TO. A Statistical Analysis of the Effects of Urease Pre-treatment on the Measurement of the Urinary Metabolome by Gas Chromatography-Mass Spectrometry. Metabolomics : Official Journal of the Metabolomic Society. 10: 897-908. PMID 25254001 DOI: 10.1007/s11306-014-0642-1  1
2014 Huang EL, Aylward FO, Kim YM, Webb-Robertson BJ, Nicora CD, Hu Z, Metz TO, Lipton MS, Smith RD, Currie CR, Burnum-Johnson KE. The fungus gardens of leaf-cutter ants undergo a distinct physiological transition during biomass degradation. Environmental Microbiology Reports. 6: 389-95. PMID 24992538 DOI: 10.1111/1758-2229.12163  1
2014 Cole JK, Hutchison JR, Renslow RS, Kim YM, Chrisler WB, Engelmann HE, Dohnalkova AC, Hu D, Metz TO, Fredrickson JK, Lindemann SR. Phototrophic biofilm assembly in microbial-mat-derived unicyanobacterial consortia: model systems for the study of autotroph-heterotroph interactions. Frontiers in Microbiology. 5: 109. PMID 24778628 DOI: 10.3389/fmicb.2014.00109  1
2014 Anderson JC, Wan Y, Kim YM, Pasa-Tolic L, Metz TO, Peck SC. Decreased abundance of type III secretion system-inducing signals in Arabidopsis mkp1 enhances resistance against Pseudomonas syringae. Proceedings of the National Academy of Sciences of the United States of America. 111: 6846-51. PMID 24753604 DOI: 10.1073/pnas.1403248111  1
2013 Deatherage Kaiser BL, Li J, Sanford JA, Kim YM, Kronewitter SR, Jones MB, Peterson CT, Peterson SN, Frank BC, Purvine SO, Brown JN, Metz TO, Smith RD, Heffron F, Adkins JN. A Multi-Omic View of Host-Pathogen-Commensal Interplay in Salmonella-Mediated Intestinal Infection. Plos One. 8: e67155. PMID 23840608 DOI: 10.1371/journal.pone.0067155  1
2013 Kim YM, Schmidt BJ, Kidwai AS, Jones MB, Deatherage Kaiser BL, Brewer HM, Mitchell HD, Palsson BO, McDermott JE, Heffron F, Smith RD, Peterson SN, Ansong C, Hyduke DR, Metz TO, et al. Salmonella modulates metabolism during growth under conditions that induce expression of virulence genes. Molecular Biosystems. 9: 1522-34. PMID 23559334 DOI: 10.1039/c3mb25598k  1
2013 Ansong C, Schrimpe-Rutledge AC, Mitchell HD, Chauhan S, Jones MB, Kim YM, McAteer K, Deatherage Kaiser BL, Dubois JL, Brewer HM, Frank BC, McDermott JE, Metz TO, Peterson SN, Smith RD, et al. A multi-omic systems approach to elucidating Yersinia virulence mechanisms. Molecular Biosystems. 9: 44-54. PMID 23147219 DOI: 10.1039/c2mb25287b  1
2013 Ansong C, Deatherage BL, Hyduke D, Schmidt B, McDermott JE, Jones MB, Chauhan S, Charusanti P, Kim YM, Nakayasu ES, Li J, Kidwai A, Niemann G, Brown RN, Metz TO, et al. Studying Salmonellae and Yersiniae host-pathogen interactions using integrated 'omics and modeling. Current Topics in Microbiology and Immunology. 363: 21-41. PMID 22886542 DOI: 10.1007/82_2012_247  1
2012 Bordbar A, Mo ML, Nakayasu ES, Schrimpe-Rutledge AC, Kim YM, Metz TO, Jones MB, Frank BC, Smith RD, Peterson SN, Hyduke DR, Adkins JN, Palsson BO. Model-driven multi-omic data analysis elucidates metabolic immunomodulators of macrophage activation. Molecular Systems Biology. 8: 558. PMID 22735334 DOI: 10.1038/msb.2012.21  1
2012 Hu ZP, Kim YM, Sowa MB, Robinson RJ, Gao X, Metz TO, Morgan WF, Zhang Q. Metabolomic response of human skin tissue to low dose ionizing radiation. Molecular Biosystems. 8: 1979-86. PMID 22610363 DOI: 10.1039/c2mb25061f  1
2011 Kim YM, Metz TO, Hu Z, Wiedner SD, Kim JS, Smith RD, Morgan WF, Zhang Q. Formation of dehydroalanine from mimosine and cysteine: artifacts in gas chromatography/mass spectrometry based metabolomics. Rapid Communications in Mass Spectrometry : Rcm. 25: 2561-4. PMID 21910289 DOI: 10.1002/rcm.5134  1
2011 Kim YM, Murugesan K, Schmidt S, Bokare V, Jeon JR, Kim EJ, Chang YS. Triclosan susceptibility and co-metabolism--a comparison for three aerobic pollutant-degrading bacteria. Bioresource Technology. 102: 2206-12. PMID 21041079 DOI: 10.1016/j.biortech.2010.10.009  1
2010 Jeon JR, Kim EJ, Murugesan K, Park HK, Kim YM, Kwon JH, Kim WG, Lee JY, Chang YS. Laccase-catalysed polymeric dye synthesis from plant-derived phenols for potential application in hair dyeing: Enzymatic colourations driven by homo- or hetero-polymer synthesis. Microbial Biotechnology. 3: 324-35. PMID 21255331 DOI: 10.1111/j.1751-7915.2009.00153.x  1
2010 Kim EJ, Jeon JR, Kim YM, Murugesan K, Chang YS. Mineralization and transformation of monofluorophenols by Pseudonocardia benzenivorans. Applied Microbiology and Biotechnology. 87: 1569-77. PMID 20473664 DOI: 10.1007/s00253-010-2647-7  1
2010 Bokare V, Murugesan K, Kim YM, Jeon JR, Kim EJ, Chang YS. Degradation of triclosan by an integrated nano-bio redox process. Bioresource Technology. 101: 6354-60. PMID 20381343 DOI: 10.1016/j.biortech.2010.03.062  1
2010 Murugesan K, Chang YY, Kim YM, Jeon JR, Kim EJ, Chang YS. Enhanced transformation of triclosan by laccase in the presence of redox mediators. Water Research. 44: 298-308. PMID 19854464 DOI: 10.1016/j.watres.2009.09.058  1
2009 Jeon JR, Kim EJ, Kim YM, Murugesan K, Kim JH, Chang YS. Use of grape seed and its natural polyphenol extracts as a natural organic coagulant for removal of cationic dyes. Chemosphere. 77: 1090-8. PMID 19786292 DOI: 10.1016/j.chemosphere.2009.08.036  1
2009 Murugesan K, Kim YM, Jeon JR, Chang YS. Effect of metal ions on reactive dye decolorization by laccase from Ganoderma lucidum. Journal of Hazardous Materials. 168: 523-9. PMID 19356850 DOI: 10.1016/j.jhazmat.2009.02.075  1
2009 Murugesan K, Yang IH, Kim YM, Jeon JR, Chang YS. Enhanced transformation of malachite green by laccase of Ganoderma lucidum in the presence of natural phenolic compounds. Applied Microbiology and Biotechnology. 82: 341-50. PMID 19130052 DOI: 10.1007/s00253-008-1819-1  1
2009 Kim YM, Jeon JR, Murugesan K, Kim EJ, Chang YS. Biodegradation of 1,4-dioxane and transformation of related cyclic compounds by a newly isolated Mycobacterium sp. PH-06. Biodegradation. 20: 511-9. PMID 19085063 DOI: 10.1007/s10532-008-9240-0  1
2009 Jin JY, Kim YM, Lee SH, Lee YS. Synthesis of an acrylic copolymer bearing fluorescent dye pendants and characterization as a luminescence conversion material in fabrication of a luminescence conversion light-emitting diode Synthetic Metals. 159: 1804-1808. DOI: 10.1016/j.synthmet.2009.05.030  0.44
2008 Jeon JR, Murugesan K, Kim YM, Kim EJ, Chang YS. Synergistic effect of laccase mediators on pentachlorophenol removal by Ganoderma lucidum laccase. Applied Microbiology and Biotechnology. 81: 783-90. PMID 18987855 DOI: 10.1007/s00253-008-1753-2  1
2008 Nam IH, Kim YM, Murugesan K, Jeon JR, Chang YY, Chang YS. Bioremediation of PCDD/Fs-contaminated municipal solid waste incinerator fly ash by a potent microbial biocatalyst. Journal of Hazardous Materials. 157: 114-21. PMID 18258362 DOI: 10.1016/j.jhazmat.2007.12.086  1
2007 Kim YM, Nam IH, Murugesan K, Schmidt S, Crowley DE, Chang YS. Biodegradation of diphenyl ether and transformation of selected brominated congeners by Sphingomonas sp. PH-07. Applied Microbiology and Biotechnology. 77: 187-94. PMID 17694301 DOI: 10.1007/s00253-007-1129-z  1
2007 Hong HB, Nam IH, Kim YM, Chang YS, Schmidt S. Effect of heavy metals on the biodegradation of dibenzofuran in liquid medium. Journal of Hazardous Materials. 140: 145-8. PMID 16879920 DOI: 10.1016/j.jhazmat.2006.06.049  1
2006 Nam IH, Hong HB, Kim YM, Kim BH, Murugesan K, Chang YS. Author's reply to comment on "Biological removal of polychlorinated dibenzo-p-dioxins from incinerator fly ash by sphingomonas wittichii RW1" by Rolf U. Halden. Water Research. 40: 2246-7. PMID 16712898 DOI: 10.1016/j.watres.2006.03.031  1
2006 Murugesan K, Arulmani M, Nam IH, Kim YM, Chang YS, Kalaichelvan PT. Purification and characterization of laccase produced by a white rot fungus Pleurotus sajor-caju under submerged culture condition and its potential in decolorization of azo dyes. Applied Microbiology and Biotechnology. 72: 939-46. PMID 16568314 DOI: 10.1007/s00253-006-0403-9  1
2006 Nam IH, Kim YM, Schmidt S, Chang YS. Biotransformation of 1,2,3-tri- and 1,2,3,4,7,8-hexachlorodibenzo-p- dioxin by Sphingomonas wittichii strain RW1. Applied and Environmental Microbiology. 72: 112-6. PMID 16391032 DOI: 10.1128/AEM.72.1.112-116.2006  1
2005 Nam IH, Hong HB, Kim YM, Kim BH, Murugesan K, Chang YS. Biological removal of polychlorinated dibenzo-p-dioxins from incinerator fly ash by Sphingomonas wittichii RW1. Water Research. 39: 4651-60. PMID 16256169 DOI: 10.1016/j.watres.2005.09.009  1
2004 Hong HB, Nam IH, Murugesan K, Kim YM, Chang YS. Biodegradation of dibenzo-p-dioxin, dibenzofuran, and chlorodibenzo-p-dioxins by Pseudomonas veronii PH-03. Biodegradation. 15: 303-13. PMID 15523913  1
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