Jason D. Kahn - Publications

Chemistry and Biochemistry University of Maryland, College Park, College Park, MD 
DNA looping, transcription, topology

46 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Zimmermann AC, White IM, Kahn JD. Nucleic acid-cleaving catalytic DNA for sensing and therapeutics. Talanta. 211: 120709. PMID 32070594 DOI: 10.1016/J.Talanta.2019.120709  1
2017 Wang X, Hoshika S, Peterson RJ, Kim MJ, Benner SA, Kahn JD. The Biophysics of Artificially Expanded Genetic Information Systems. Thermodynamics of DNA Duplexes Containing Matches and Mismatches Involving 2-Amino-3-nitropyridin-6-one (Z) and Imidazo[1,2-a]-1,3,5-triazin-4(8H)one (P). Acs Synthetic Biology. PMID 28094993 DOI: 10.1021/Acssynbio.6B00224  1
2016 Brinson RG, Miller JT, Kahn JD, Le Grice SF, Marino JP. Applying Thymine Isostere 2,4-Difluoro-5-Methylbenzene as a NMR Assignment Tool and Probe of Homopyrimidine/Homopurine Tract Structural Dynamics. Methods in Enzymology. 566: 89-110. PMID 26791977 DOI: 10.1016/Bs.Mie.2015.05.009  1
2015 Brinson RG, Miller JT, Kahn JD, Le Grice SFJ, Marino JP. Applying Thymine Isostere 2,4-Difluoro-5-Methylbenzene as a NMR Assignment Tool and Probe of Homopyrimidine/Homopurine Tract Structural Dynamics Methods in Enzymology. DOI: 10.1016/bs.mie.2015.05.009  1
2014 Lee A, Karcz A, Akman R, Zheng T, Kwon S, Chou ST, Sucayan S, Tricoli LJ, Hustedt JM, Leng Q, Kahn JD, Mixson AJ, Seog J. Direct observation of dynamic mechanical regulation of DNA condensation by environmental stimuli. Angewandte Chemie (International Ed. in English). 53: 10631-5. PMID 25146232 DOI: 10.1002/Anie.201403499  1
2014 Kahn JD. DNA, flexibly flexible. Biophysical Journal. 107: 282-4. PMID 25028868 DOI: 10.1016/J.Bpj.2014.06.007  1
2014 Revalee JD, Blab GA, Wilson HD, Kahn JD, Meiners JC. Tethered particle motion reveals that LacI·DNA loops coexist with a competitor-resistant but apparently unlooped conformation. Biophysical Journal. 106: 705-15. PMID 24507611 DOI: 10.1016/J.Bpj.2013.12.024  1
2014 Chou ST, Hom K, Zhang D, Leng Q, Tricoli LJ, Hustedt JM, Lee A, Shapiro MJ, Seog J, Kahn JD, Mixson AJ. Enhanced silencing and stabilization of siRNA polyplexes by histidine-mediated hydrogen bonds. Biomaterials. 35: 846-55. PMID 24161165 DOI: 10.1016/J.Biomaterials.2013.10.019  1
2013 Gowetski DB, Kodis EJ, Kahn JD. Rationally designed coiled-coil DNA looping peptides control DNA topology. Nucleic Acids Research. 41: 8253-65. PMID 23825092 DOI: 10.1093/Nar/Gkt553  1
2013 Goodson KA, Wang Z, Haeusler AR, Kahn JD, English DS. LacI-DNA-IPTG loops: equilibria among conformations by single-molecule FRET. The Journal of Physical Chemistry. B. 117: 4713-22. PMID 23406418 DOI: 10.1021/Jp308930C  1
2013 Chou ST, Leng Q, Scaria P, Kahn JD, Tricoli LJ, Woodle M, Mixson AJ. Surface-modified HK:siRNA nanoplexes with enhanced pharmacokinetics and tumor growth inhibition. Biomacromolecules. 14: 752-60. PMID 23360232 DOI: 10.1021/Bm3018356  1
2012 Haeusler AR, Goodson KA, Lillian TD, Wang X, Goyal S, Perkins NC, Kahn JD. FRET studies of a landscape of Lac repressor-mediated DNA loops. Nucleic Acids Research. 40: 4432-45. PMID 22307389 DOI: 10.1093/Nar/Gks019  1
2011 Peters JP, Becker NA, Rueter EM, Bajzer Z, Kahn JD, Maher LJ. Quantitative methods for measuring DNA flexibility in vitro and in vivo. Methods in Enzymology. 488: 287-335. PMID 21195233 DOI: 10.1016/B978-0-12-381268-1.00012-4  1
2010 Bond LM, Peters JP, Becker NA, Kahn JD, Maher LJ. Gene repression by minimal lac loops in vivo. Nucleic Acids Research. 38: 8072-82. PMID 21149272 DOI: 10.1093/Nar/Gkq755  1
2008 Lillian TD, Goyal S, Kahn JD, Meyhöfer E, Perkins NC. Computational analysis of looping of a large family of highly bent DNA by LacI. Biophysical Journal. 95: 5832-42. PMID 18931251 DOI: 10.1529/Biophysj.108.142471  1
2008 Becker NA, Kahn JD, Maher LJ. Eukaryotic HMGB proteins as replacements for HU in E. coli repression loop formation. Nucleic Acids Research. 36: 4009-21. PMID 18515834 DOI: 10.1093/Nar/Gkn353  1
2007 Becker NA, Kahn JD, Maher LJ. Effects of nucleoid proteins on DNA repression loop formation in Escherichia coli. Nucleic Acids Research. 35: 3988-4000. PMID 17553830 DOI: 10.1093/Nar/Gkm419  1
2006 Levin JD, Fiala D, Samala MF, Kahn JD, Peterson RJ. Position-dependent effects of locked nucleic acid (LNA) on DNA sequencing and PCR primers. Nucleic Acids Research. 34: e142. PMID 17071964 DOI: 10.1093/Nar/Gkl756  1
2006 Amzallag A, Vaillant C, Jacob M, Unser M, Bednar J, Kahn JD, Dubochet J, Stasiak A, Maddocks JH. 3D reconstruction and comparison of shapes of DNA minicircles observed by cryo-electron microscopy. Nucleic Acids Research. 34: e125. PMID 17012274 DOI: 10.1093/Nar/Gkl675  1
2006 McDonald RJ, Kahn JD, Maher LJ. DNA bending by bHLH charge variants. Nucleic Acids Research. 34: 4846-56. PMID 16973898 DOI: 10.1093/Nar/Gkl552  1
2005 Morgan MA, Okamoto K, Kahn JD, English DS. Single-molecule spectroscopic determination of lac repressor-DNA loop conformation. Biophysical Journal. 89: 2588-96. PMID 16085773 DOI: 10.1529/Biophysj.105.067728  1
2005 Becker NA, Kahn JD, Maher LJ. Bacterial repression loops require enhanced DNA flexibility. Journal of Molecular Biology. 349: 716-30. PMID 15893770 DOI: 10.1016/J.Jmb.2005.04.035  1
2004 Lilja AE, Jenssen JR, Kahn JD. Geometric and dynamic requirements for DNA looping, wrapping and unwrapping in the activation of E.coli glnAp2 transcription by NtrC. Journal of Molecular Biology. 342: 467-78. PMID 15327947 DOI: 10.1016/J.Jmb.2004.07.057  1
2004 McTigue PM, Peterson RJ, Kahn JD. Sequence-dependent thermodynamic parameters for locked nucleic acid (LNA)-DNA duplex formation. Biochemistry. 43: 5388-405. PMID 15122905 DOI: 10.1021/Bi035976D  1
2003 Edelman LM, Cheong R, Kahn JD. Fluorescence resonance energy transfer over approximately 130 basepairs in hyperstable lac repressor-DNA loops. Biophysical Journal. 84: 1131-45. PMID 12547794 DOI: 10.1016/S0006-3495(03)74929-7  1
2002 Hardwidge PR, Kahn JD, Maher LJ. Dominant effect of protein charge rather than protein shape in apparent DNA bending by engineered bZIP domains. Biochemistry. 41: 8277-88. PMID 12081476 DOI: 10.1021/Bi020185H  1
2002 Kahn JD. DNA topology: Applications to gene expression Current Organic Chemistry. 6: 815-826. DOI: 10.2174/1385272023373897  1
2000 Kahn JD. Topological effects of the TATA box binding protein on minicircle DNA and a possible thermodynamic linkage to chromatin remodeling. Biochemistry. 39: 3520-4. PMID 10736150 DOI: 10.1021/Bi992263F  1
1999 Kahn JD. Methods for analyzing DNA bending. Methods in Molecular Biology (Clifton, N.J.). 94: 109-23. PMID 12844867 DOI: 10.1385/1-59259-259-7:109  1
1999 Mehta RA, Kahn JD. Designed hyperstable Lac repressor.DNA loop topologies suggest alternative loop geometries. Journal of Molecular Biology. 294: 67-77. PMID 10556029 DOI: 10.1006/Jmbi.1999.3244  1
1999 Davis NA, Majee SS, Kahn JD. TATA box DNA deformation with and without the TATA box-binding protein. Journal of Molecular Biology. 291: 249-65. PMID 10438619 DOI: 10.1006/Jmbi.1999.2947  1
1998 Kahn JD, Crothers DM. Measurement of the DNA bend angle induced by the catabolite activator protein using Monte Carlo simulation of cyclization kinetics. Journal of Molecular Biology. 276: 287-309. PMID 9514724 DOI: 10.1006/Jmbi.1997.1515  1
1998 Hockings SC, Kahn JD, Crothers DM. Characterization of the ATF/CREB site and its complex with GCN4. Proceedings of the National Academy of Sciences of the United States of America. 95: 1410-5. PMID 9465028 DOI: 10.1073/Pnas.95.4.1410  1
1997 Widlund HR, Cao H, Simonsson S, Magnusson E, Simonsson T, Nielsen PE, Kahn JD, Crothers DM, Kubista M. Identification and characterization of genomic nucleosome-positioning sequences. Journal of Molecular Biology. 267: 807-17. PMID 9135113 DOI: 10.1006/Jmbi.1997.0916  1
1996 Manning RS, Maddocks JH, Kahn JD. A continuum rod model of sequence-dependent DNA structure Journal of Chemical Physics. 105: 5626-5646. DOI: 10.1063/1.472373  1
1994 Kahn JD, Yun E, Crothers DM. Detection of localized DNA flexibility. Nature. 368: 163-6. PMID 8139661 DOI: 10.1038/368163A0  1
1994 Haran TE, Kahn JD, Crothers DM. Sequence elements responsible for DNA curvature. Journal of Molecular Biology. 244: 135-43. PMID 7966325 DOI: 10.1006/Jmbi.1994.1713  1
1993 Henriquez V, Milisavljevic V, Kahn JD, Gennaro ML. Sequence and structure of cmp, the replication enhancer of the Staphylococcus aureus plasmid pT181. Gene. 134: 93-8. PMID 8244037 DOI: 10.1016/0378-1119(93)90179-7  1
1993 Kahn JD, Crothers DM. DNA bending in transcription initiation. Cold Spring Harbor Symposia On Quantitative Biology. 58: 115-22. PMID 7956021 DOI: 10.1101/Sqb.1993.058.01.015  1
1992 Crothers DM, Drak J, Kahn JD, Levene SD. DNA bending, flexibility, and helical repeat by cyclization kinetics. Methods in Enzymology. 212: 3-29. PMID 1518450 DOI: 10.1016/0076-6879(92)12003-9  1
1992 Kahn JD, Crothers DM. Protein-induced bending and DNA cyclization. Proceedings of the National Academy of Sciences of the United States of America. 89: 6343-7. PMID 1321436 DOI: 10.1073/Pnas.89.14.6343  1
1990 Monforte JA, Kahn JD, Hearst JE. RNA folding during transcription by Escherichia coli RNA polymerase analyzed by RNA self-cleavage. Biochemistry. 29: 7882-90. PMID 1702018 DOI: 10.1021/Bi00486A015  1
1989 Kahn JD, Hearst JE. Reversibility of nucleotide incorporation by Escherichia coli RNA polymerase, and its effect on fidelity. Journal of Molecular Biology. 205: 291-314. PMID 2467002 DOI: 10.1016/0022-2836(89)90342-2  1
1988 Kahn JD, Haag A, Von Ragué Schleyer P. Mass spectrometry of gas-phase lithium alkoxides Journal of Physical Chemistry. 92: 212-220. DOI: 10.1021/J100312A046  1
1986 Spielmann HP, Kahn JD, Hearst JE. New methods for probing nucleic acids. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 5: 232-4. PMID 2434078 DOI: 10.1002/Bies.950050512  1
1986 Bergsma JP, Coladonato MH, Edelsten PM, Kahn JD, Wilson KR, Fredkin DR. Transient x-ray scattering calculated from molecular dynamics The Journal of Chemical Physics. 84: 6151-6160.  1
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