| Year |
Citation |
Score |
| 2018 |
Royet D, Dempsey N, Simonet P, Frénéa-Robin M. A new magnetic cell fishing approach based on hybridization chain reaction: HCR-MISH Sensors and Actuators B: Chemical. 273: 126-132. DOI: 10.1016/J.Snb.2018.05.150 |
0.306 |
|
| 2017 |
Zhu YG, Gillings M, Simonet P, Stekel D, Banwart S, Penuelas J. Human dissemination of genes and microorganisms in Earth's Critical Zone. Global Change Biology. PMID 29266645 DOI: 10.1111/Gcb.14003 |
0.353 |
|
| 2017 |
Zhu YG, Gillings M, Simonet P, Stekel D, Banwart S, Penuelas J. Microbial mass movements. Science (New York, N.Y.). 357: 1099-1100. PMID 28912233 DOI: 10.1126/Science.Aao3007 |
0.306 |
|
| 2017 |
Hily JM, Demanèche S, Poulicard N, Tannières M, Djennane S, Beuve M, Vigne E, Demangeat G, Komar V, Gertz C, Marmonier A, Hemmer C, Vigneron S, Marais A, Candresse T, ... Simonet P, et al. Metagenomic-based impact study of transgenic grapevine rootstock on its associated virome and soil bacteriome. Plant Biotechnology Journal. PMID 28544449 DOI: 10.1111/Pbi.12761 |
0.786 |
|
| 2017 |
Blanchard LS, Monin A, Ouertani H, Touaibia L, Michel E, Buret F, Simonet P, Morris CE, Demanèche S. Survival and electrotransformation of Pseudomonas syringae strains under simulated cloud-like conditions. Fems Microbiology Ecology. PMID 28459967 DOI: 10.1093/Femsec/Fix057 |
0.788 |
|
| 2016 |
Demanèche S, Schauser L, Dawson L, Franqueville L, Simonet P. Microbial soil community analyses for forensic science: Application to a blind test. Forensic Science International. 270: 153-158. PMID 27984802 DOI: 10.1016/J.Forsciint.2016.12.004 |
0.761 |
|
| 2016 |
Habtom H, Demanèche S, Dawson L, Azulay C, Matan O, Robe P, Gafny R, Simonet P, Jurkevitch E, Pasternak Z. Soil characterisation by bacterial community analysis for forensic applications: A quantitative comparison of environmental technologies. Forensic Science International. Genetics. 26: 21-29. PMID 27750077 DOI: 10.1016/J.Fsigen.2016.10.005 |
0.785 |
|
| 2016 |
Subirats J, Sànchez-Melsió A, Borrego CM, Balcázar JL, Simonet P. Metagenomic analysis reveals that bacteriophages are reservoirs of antibiotic resistance genes. International Journal of Antimicrobial Agents. 48: 163-7. PMID 27312355 DOI: 10.1016/J.Ijantimicag.2016.04.028 |
0.395 |
|
| 2016 |
Nesme J, Achouak W, Agathos SN, Bailey M, Baldrian P, Brunel D, Frostegård Å, Heulin T, Jansson JK, Jurkevitch E, Kruus KL, Kowalchuk GA, Lagares A, Lappin-Scott HM, Lemanceau P, ... ... Simonet P, et al. Back to the Future of Soil Metagenomics. Frontiers in Microbiology. 7: 73. PMID 26903960 DOI: 10.3389/Fmicb.2016.00073 |
0.742 |
|
| 2016 |
Ufarté L, Bozonnet S, Laville E, Cecchini DA, Pizzut-Serin S, Jacquiod S, Demanèche S, Simonet P, Franqueville L, Veronese GP. Functional Metagenomics: Construction and High-Throughput Screening of Fosmid Libraries for Discovery of Novel Carbohydrate-Active Enzymes. Methods in Molecular Biology (Clifton, N.J.). 1399: 257-71. PMID 26791508 DOI: 10.1007/978-1-4939-3369-3_15 |
0.768 |
|
| 2015 |
Navarro E, Fabrègue O, Scorretti R, Reboulet J, Simonet P, Dawson L, Demanèche S. RisaAligner software for aligning fluorescence data between Agilent 2100 Bioanalyzer chips: Application to soil microbial community analysis. Biotechniques. 59: 347, 349-52, 354-6 p. PMID 26651514 DOI: 10.2144/000114363 |
0.757 |
|
| 2015 |
Pivetal J, Frénéa-Robin M, Haddour N, Vézy C, Zanini LF, Ciuta G, Dempsey NM, Dumas-Bouchiat F, Reyne G, Bégin-Colin S, Felder-Flesh D, Ghobril C, Pourroy G, Simonet P. Development and applications of a DNA labeling method with magnetic nanoparticles to study the role of horizontal gene transfer events between bacteria in soil pollutant bioremediation processes. Environmental Science and Pollution Research International. PMID 26498963 DOI: 10.1007/S11356-015-5614-0 |
0.837 |
|
| 2015 |
Delmont TO, Eren AM, Maccario L, Prestat E, Esen ÖC, Pelletier E, Le Paslier D, Simonet P, Vogel TM. Reconstructing rare soil microbial genomes using in situ enrichments and metagenomics. Frontiers in Microbiology. 6: 358. PMID 25983722 DOI: 10.3389/Fmicb.2015.00358 |
0.402 |
|
| 2015 |
Nesme J, Simonet P. The soil resistome: a critical review on antibiotic resistance origins, ecology and dissemination potential in telluric bacteria. Environmental Microbiology. 17: 913-30. PMID 25286745 DOI: 10.1111/1462-2920.12631 |
0.757 |
|
| 2015 |
Pivetal J, Royet D, Ciuta G, Frenea-Robin M, Haddour N, Dempsey NM, Dumas-Bouchiat F, Simonet P. Micro-magnet arrays for specific single bacterial cell positioning Journal of Magnetism and Magnetic Materials. 380: 72-77. DOI: 10.1016/J.Jmmm.2014.09.068 |
0.777 |
|
| 2014 |
Pivetal J, Ciuta G, Frenea-Robin M, Haddour N, Dempsey NM, Dumas-Bouchiat F, Simonet P. Magnetic nanoparticle DNA labeling for individual bacterial cell detection and recovery. Journal of Microbiological Methods. 107: 84-91. PMID 25264902 DOI: 10.1016/J.Mimet.2014.09.006 |
0.817 |
|
| 2014 |
Nesme J, Cécillon S, Delmont TO, Monier JM, Vogel TM, Simonet P. Large-scale metagenomic-based study of antibiotic resistance in the environment. Current Biology : Cb. 24: 1096-100. PMID 24814145 DOI: 10.1016/J.Cub.2014.03.036 |
0.732 |
|
| 2014 |
Jacquiod S, Demanèche S, Franqueville L, Ausec L, Xu Z, Delmont TO, Dunon V, Cagnon C, Mandic-Mulec I, Vogel TM, Simonet P. Characterization of new bacterial catabolic genes and mobile genetic elements by high throughput genetic screening of a soil metagenomic library. Journal of Biotechnology. 190: 18-29. PMID 24721211 DOI: 10.1016/J.Jbiotec.2014.03.036 |
0.826 |
|
| 2014 |
Mathieu A, Vogel TM, Simonet P. The future of skin metagenomics. Research in Microbiology. 165: 69-76. PMID 24361423 DOI: 10.1016/J.Resmic.2013.12.002 |
0.624 |
|
| 2014 |
Pivetal J, Toru S, Frenea-Robin M, Haddour N, Cecillon S, Dempsey NM, Dumas-Bouchiat F, Simonet P. Selective isolation of bacterial cells within a microfluidic device using magnetic probe-based cell fishing Sensors and Actuators, B: Chemical. 195: 581-589. DOI: 10.1016/J.Snb.2014.01.004 |
0.784 |
|
| 2014 |
Delmont TO, Francioli D, Jacquesson S, Laoudi S, Mathieu A, Nesme J, Ceccherini MT, Nannipieri P, Simonet P, Vogel TM. Microbial community development and unseen diversity recovery in inoculated sterile soil Biology and Fertility of Soils. DOI: 10.1007/S00374-014-0925-8 |
0.787 |
|
| 2013 |
Jacquiod S, Franqueville L, Cécillon S, Vogel TM, Simonet P. Soil bacterial community shifts after chitin enrichment: an integrative metagenomic approach. Plos One. 8: e79699. PMID 24278158 DOI: 10.1371/Journal.Pone.0079699 |
0.743 |
|
| 2013 |
Mathieu A, Delmont TO, Vogel TM, Robe P, Nalin R, Simonet P. Life on human surfaces: skin metagenomics. Plos One. 8: e65288. PMID 23776466 DOI: 10.1371/Journal.Pone.0065288 |
0.585 |
|
| 2013 |
Delmont TO, Simonet P, Vogel TM. Mastering methodological pitfalls for surviving the metagenomic jungle. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 35: 744-54. PMID 23757040 DOI: 10.1002/Bies.201200155 |
0.376 |
|
| 2012 |
Delmont TO, Simonet P, Vogel TM. Describing microbial communities and performing global comparisons in the 'omic era. The Isme Journal. 6: 1625-8. PMID 22717882 DOI: 10.1038/Ismej.2012.55 |
0.319 |
|
| 2012 |
Zhang X, Nesme J, Simonet P, Frostegård A. Fate of invading bacteria in soil and survival of transformants after simulated uptake of transgenes, as evaluated by a model system based on lindane degradation. Research in Microbiology. 163: 200-10. PMID 22366693 DOI: 10.1016/J.Resmic.2012.01.007 |
0.784 |
|
| 2012 |
Delmont TO, Prestat E, Keegan KP, Faubladier M, Robe P, Clark IM, Pelletier E, Hirsch PR, Meyer F, Gilbert JA, Le Paslier D, Simonet P, Vogel TM. Structure, fluctuation and magnitude of a natural grassland soil metagenome. The Isme Journal. 6: 1677-87. PMID 22297556 DOI: 10.1038/Ismej.2011.197 |
0.43 |
|
| 2011 |
Delmont TO, Robe P, Clark I, Simonet P, Vogel TM. Metagenomic comparison of direct and indirect soil DNA extraction approaches. Journal of Microbiological Methods. 86: 397-400. PMID 21723887 DOI: 10.1016/J.Mimet.2011.06.013 |
0.434 |
|
| 2011 |
Demanèche S, Brard C, Lima O, Binet F, Simonet P. Development of a new tool to improve gene transfer frequency calculations. Journal of Microbiological Methods. 86: 255-7. PMID 21640142 DOI: 10.1016/J.Mimet.2011.05.014 |
0.744 |
|
| 2011 |
Lombard N, Prestat E, van Elsas JD, Simonet P. Soil-specific limitations for access and analysis of soil microbial communities by metagenomics. Fems Microbiology Ecology. 78: 31-49. PMID 21631545 DOI: 10.1111/J.1574-6941.2011.01140.X |
0.432 |
|
| 2011 |
Monier JM, Demanèche S, Delmont TO, Mathieu A, Vogel TM, Simonet P. Metagenomic exploration of antibiotic resistance in soil. Current Opinion in Microbiology. 14: 229-35. PMID 21601510 DOI: 10.1016/J.Mib.2011.04.010 |
0.799 |
|
| 2011 |
Delmont TO, Malandain C, Prestat E, Larose C, Monier JM, Simonet P, Vogel TM. Metagenomic mining for microbiologists. The Isme Journal. 5: 1837-43. PMID 21593798 DOI: 10.1038/Ismej.2011.61 |
0.374 |
|
| 2011 |
Demanèche S, Monier JM, Dugat-Bony E, Simonet P. Exploration of horizontal gene transfer between transplastomic tobacco and plant-associated bacteria. Fems Microbiology Ecology. 78: 129-36. PMID 21564143 DOI: 10.1111/J.1574-6941.2011.01126.X |
0.806 |
|
| 2011 |
Petric I, Philippot L, Abbate C, Bispo A, Chesnot T, Hallin S, Laval K, Lebeau T, Lemanceau P, Leyval C, Lindström K, Pandard P, Romero E, Sarr A, Schloter M, ... Simonet P, et al. Inter-laboratory evaluation of the ISO standard 11063 "Soil quality - Method to directly extract DNA from soil samples" Journal of Microbiological Methods. 84: 454-460. PMID 21256879 DOI: 10.1016/J.Mimet.2011.01.016 |
0.449 |
|
| 2011 |
Delmont TO, Robe P, Cecillon S, Clark IM, Constancias F, Simonet P, Hirsch PR, Vogel TM. Accessing the soil metagenome for studies of microbial diversity. Applied and Environmental Microbiology. 77: 1315-24. PMID 21183646 DOI: 10.1128/Aem.01526-10 |
0.481 |
|
| 2010 |
Pontiroli A, Ceccherini MT, Poté J, Wildi W, Kay E, Nannipieri P, Vogel TM, Simonet P, Monier JM. Long-term persistence and bacterial transformation potential of transplastomic plant DNA in soil. Research in Microbiology. 161: 326-34. PMID 20493252 DOI: 10.1016/J.Resmic.2010.04.009 |
0.834 |
|
| 2010 |
Lyon DY, Monier JM, Dupraz S, Freissinet C, Simonet P, Vogel TM. Integrity and biological activity of DNA after UV exposure. Astrobiology. 10: 285-92. PMID 20446869 DOI: 10.1089/Ast.2009.0359 |
0.402 |
|
| 2010 |
Nemir A, David MM, Perrussel R, Sapkota A, Simonet P, Monier JM, Vogel TM. Comparative phylogenetic microarray analysis of microbial communities in TCE-contaminated soils. Chemosphere. 80: 600-7. PMID 20444493 DOI: 10.1016/J.Chemosphere.2010.03.036 |
0.381 |
|
| 2010 |
Poté J, Teresa Ceccherini M, Rosselli W, Wildi W, Simonet P, Vogel TM. Leaching and transformability of transgenic DNA in unsaturated soil columns. Ecotoxicology and Environmental Safety. 73: 67-72. PMID 19828198 DOI: 10.1016/J.Ecoenv.2009.09.009 |
0.509 |
|
| 2010 |
Ranjard L, Dequiedt S, Jolivet C, Saby NP, Thioulouse J, Harmand J, Loisel P, Rapaport A, Fall S, Simonet P, Joffre R, Bouré NC, Maron P, Mougel C, Martin MP, et al. Biogeography of soil microbial communities: a review and a description of the ongoing french national initiative Agronomy For Sustainable Development. 30: 359-365. DOI: 10.1051/Agro/2009033 |
0.412 |
|
| 2010 |
Philippot L, Abbate C, Bispo A, Chesnot T, Hallin S, Lemanceau P, Lindström K, Pandard P, Romero E, Schloter M, Simonet P, Smalla K, Wilke BM, Petric I, Martin-Laurent F. Soil microbial diversity: an ISO standard for soil DNA extraction Journal of Soils and Sediments. 1-2. DOI: 10.1007/S11368-010-0265-8 |
0.41 |
|
| 2009 |
Mercier A, Bertolla F, Passelègue-Robe E, Simonet P. Influence of DNA conformation and role of comA and recA on natural transformation in Ralstonia solanacearum. Canadian Journal of Microbiology. 55: 762-70. PMID 19767847 DOI: 10.1139/w09-025 |
0.791 |
|
| 2009 |
Pontiroli A, Rizzi A, Simonet P, Daffonchio D, Vogel TM, Monier JM. Visual evidence of horizontal gene transfer between plants and bacteria in the phytosphere of transplastomic tobacco. Applied and Environmental Microbiology. 75: 3314-22. PMID 19329660 DOI: 10.1128/Aem.02632-08 |
0.829 |
|
| 2009 |
Poté J, Mavingui P, Navarro E, Rosselli W, Wildi W, Simonet P, Vogel TM. Extracellular plant DNA in Geneva groundwater and traditional artesian drinking water fountains. Chemosphere. 75: 498-504. PMID 19171370 DOI: 10.1016/J.Chemosphere.2008.12.048 |
0.464 |
|
| 2009 |
Demanèche S, Philippot L, David MM, Navarro E, Vogel TM, Simonet P. Characterization of denitrification gene clusters of soil bacteria via a metagenomic approach. Applied and Environmental Microbiology. 75: 534-7. PMID 19011059 DOI: 10.1128/Aem.01706-08 |
0.758 |
|
| 2009 |
Demanèche S, David MM, Navarro E, Simonet P, Vogel TM. Evaluation of functional gene enrichment in a soil metagenomic clone library. Journal of Microbiological Methods. 76: 105-7. PMID 18922230 DOI: 10.1016/J.Mimet.2008.09.009 |
0.772 |
|
| 2009 |
Vogel TM, Simonet P, Hirsch PR, Jansson JK, Tiedje JM, van Elsas JD, Nalin R, Philippot L, Bailey MJ. Advantages of the metagenomic approach for soil exploration: Reply from Vogel et al. Nature Reviews Microbiology. 7: 756-757. DOI: 10.1038/Nrmicro2119-C3 |
0.421 |
|
| 2009 |
Vogel TM, Simonet P, Jansson JK, Hirsch PR, Tiedje JM, van Elsas JD, Bailey MJ, Nalin R, Philippot L. TerraGenome: A consortium for the sequencing of a soil metagenome Nature Reviews Microbiology. 7: 252. DOI: 10.1038/Nrmicro2119 |
0.372 |
|
| 2009 |
Sørensen J, Nicolaisen MH, Ron E, Simonet P. Molecular tools in rhizosphere microbiology-from single-cell to whole-community analysis Plant and Soil. 321: 483-512. DOI: 10.1007/S11104-009-9946-8 |
0.373 |
|
| 2008 |
Coupat B, Chaumeille-Dole F, Fall S, Prior P, Simonet P, Nesme X, Bertolla F. Natural transformation in the Ralstonia solanacearum species complex: Number and size of DNA that can be transferred Fems Microbiology Ecology. 66: 14-24. PMID 18662313 DOI: 10.1111/J.1574-6941.2008.00552.X |
0.791 |
|
| 2008 |
David MM, Sapkota AR, Simonet P, Vogel TM. A novel and rapid method for synthesizing positive controls and standards for quantitative PCR. Journal of Microbiological Methods. 73: 73-7. PMID 18313777 DOI: 10.1016/J.Mimet.2008.01.001 |
0.406 |
|
| 2008 |
Demanèche S, Sanguin H, Poté J, Navarro E, Bernillon D, Mavingui P, Wildi W, Vogel TM, Simonet P. Antibiotic-resistant soil bacteria in transgenic plant fields. Proceedings of the National Academy of Sciences of the United States of America. 105: 3957-62. PMID 18292221 DOI: 10.1073/Pnas.0800072105 |
0.791 |
|
| 2008 |
Rizzi A, Pontiroli A, Brusetti L, Borin S, Sorlini C, Abruzzese A, Sacchi GA, Vogel TM, Simonet P, Bazzicalupo M, Nielsen KM, Monier JM, Daffonchio D. Strategy for in situ detection of natural transformation-based horizontal gene transfer events. Applied and Environmental Microbiology. 74: 1250-4. PMID 18165369 DOI: 10.1128/Aem.02185-07 |
0.795 |
|
| 2007 |
Monier JM, Bernillon D, Kay E, Faugier A, Rybalka O, Dessaux Y, Simonet P, Vogel TM. Detection of potential transgenic plant DNA recipients among soil bacteria. Environmental Biosafety Research. 6: 71-83. PMID 17961481 DOI: 10.1051/Ebr:2007036 |
0.822 |
|
| 2007 |
Pontiroli A, Simonet P, Frostegard A, Vogel TM, Monier JM. Fate of transgenic plant DNA in the environment. Environmental Biosafety Research. 6: 15-35. PMID 17961478 DOI: 10.1051/Ebr:2007037 |
0.84 |
|
| 2007 |
Fall S, Mercier A, Bertolla F, Calteau A, Gueguen L, Perrière G, Vogel TM, Simonet P. Horizontal gene transfer regulation in bacteria as a "spandrel" of DNA repair mechanisms. Plos One. 2: e1055. PMID 17957239 DOI: 10.1371/Journal.Pone.0001055 |
0.802 |
|
| 2007 |
Mercier A, Bertolla F, Passelègue-Robe E, Simonet P. Natural transformation-based foreign DNA acquisition in a Ralstonia solanacearum mutS mutant. Research in Microbiology. 158: 537-44. PMID 17618086 DOI: 10.1016/J.Resmic.2007.05.003 |
0.81 |
|
| 2006 |
Boubakri H, Beuf M, Simonet P, Vogel TM. Development of metagenomic DNA shuffling for the construction of a xenobiotic gene. Gene. 375: 87-94. PMID 16690231 DOI: 10.1016/J.Gene.2006.02.027 |
0.496 |
|
| 2006 |
Cérémonie H, Buret F, Simonet P, Vogel TM. Natural Pseudomonas sp. strain N3 in artificial soil microcosms. Applied and Environmental Microbiology. 72: 2385-9. PMID 16597934 DOI: 10.1128/Aem.72.4.2385-2389.2006 |
0.441 |
|
| 2006 |
Cérémonie H, Boubakri H, Mavingui P, Simonet P, Vogel TM. Plasmid-encoded gamma-hexachlorocyclohexane degradation genes and insertion sequences in Sphingobium francense (ex-Sphingomonas paucimobilis Sp+). Fems Microbiology Letters. 257: 243-52. PMID 16553860 DOI: 10.1111/J.1574-6968.2006.00188.X |
0.384 |
|
| 2006 |
Sanguin H, Herrera A, Oger-Desfeux C, Dechesne A, Simonet P, Navarro E, Vogel TM, Moënne-Loccoz Y, Nesme X, Grundmann GL. Development and validation of a prototype 16S rRNA-based taxonomic microarray for Alphaproteobacteria. Environmental Microbiology. 8: 289-307. PMID 16423016 DOI: 10.1111/J.1462-2920.2005.00895.X |
0.417 |
|
| 2005 |
Mavingui P, Van VT, Labeyrie E, Rancès E, Vavre F, Simonet P. Efficient procedure for purification of obligate intracellular Wolbachia pipientis and representative amplification of its genome by multiple-displacement amplification. Applied and Environmental Microbiology. 71: 6910-7. PMID 16269725 DOI: 10.1128/Aem.71.11.6910-6917.2005 |
0.412 |
|
| 2005 |
Ginolhac A, Jarrin C, Robe P, Perrière G, Vogel TM, Simonet P, Nalin R. Type I polyketide synthases may have evolved through horizontal gene transfer. Journal of Molecular Evolution. 60: 716-25. PMID 15909225 DOI: 10.1007/S00239-004-0161-1 |
0.346 |
|
| 2005 |
Bertrand H, Poly F, Van VT, Lombard N, Nalin R, Vogel TM, Simonet P. High molecular weight DNA recovery from soils prerequisite for biotechnological metagenomic library construction. Journal of Microbiological Methods. 62: 1-11. PMID 15823390 DOI: 10.1016/J.Mimet.2005.01.003 |
0.502 |
|
| 2004 |
Cérémonie H, Buret F, Simonet P, Vogel TM. Isolation of lightning-competent soil bacteria. Applied and Environmental Microbiology. 70: 6342-6. PMID 15466589 DOI: 10.1128/Aem.70.10.6342-6346.2004 |
0.447 |
|
| 2004 |
Ginolhac A, Jarrin C, Gillet B, Robe P, Pujic P, Tuphile K, Bertrand H, Vogel TM, Perrière G, Simonet P, Nalin R. Phylogenetic analysis of polyketide synthase I domains from soil metagenomic libraries allows selection of promising clones. Applied and Environmental Microbiology. 70: 5522-7. PMID 15345440 DOI: 10.1128/Aem.70.9.5522-5527.2004 |
0.367 |
|
| 2003 |
Kay E, Chabrillat G, Vogel TM, Simonet P. Intergeneric transfer of chromosomal and conjugative plasmid genes between Ralstonia solanacearum and Acinetobacter sp. BD413. Molecular Plant-Microbe Interactions : Mpmi. 16: 74-82. PMID 12580284 DOI: 10.1094/Mpmi.2003.16.1.74 |
0.819 |
|
| 2003 |
Ceccherini M, Poté J, Kay E, Van VT, Maréchal J, Pietramellara G, Nannipieri P, Vogel TM, Simonet P. Degradation and transformability of DNA from transgenic leaves. Applied and Environmental Microbiology. 69: 673-8. PMID 12514059 DOI: 10.1128/Aem.69.1.673-678.2003 |
0.816 |
|
| 2003 |
Courtois S, Cappellano CM, Ball M, Francou FX, Normand P, Helynck G, Martinez A, Kolvek SJ, Hopke J, Osburne MS, August PR, Nalin R, Guérineau M, Jeannin P, Simonet P, et al. Recombinant environmental libraries provide access to microbial diversity for drug discovery from natural products. Applied and Environmental Microbiology. 69: 49-55. PMID 12513976 DOI: 10.1128/Aem.69.1.49-55.2003 |
0.781 |
|
| 2003 |
Robe P, Nalin R, Capellano C, Vogel TM, Simonet P. Extraction of DNA from soil European Journal of Soil Biology. 39: 183-190. DOI: 10.1016/S1164-5563(03)00033-5 |
0.457 |
|
| 2003 |
Poté J, Ceccherini MT, Van VT, Rosselli W, Wildi W, Simonet P, Vogel TM. Fate and transport of antibiotic resistance genes in saturated soil columns European Journal of Soil Biology. 39: 65-71. DOI: 10.1016/S1164-5563(03)00003-7 |
0.495 |
|
| 2002 |
Kay E, Vogel TM, Bertolla F, Nalin R, Simonet P. In situ transfer of antibiotic resistance genes from transgenic (transplastomic) tobacco plants to bacteria. Applied and Environmental Microbiology. 68: 3345-51. PMID 12089013 DOI: 10.1128/Aem.68.7.3345-3351.2002 |
0.826 |
|
| 2002 |
Kay E, Bertolla F, Vogel TM, Simonet P. Opportunistic colonization of Ralstonia solanacearum-infected plants by Acinetobacter sp. and its natural competence development. Microbial Ecology. 43: 291-7. PMID 12037607 DOI: 10.1007/S00248-002-2007-Y |
0.801 |
|
| 2002 |
Clerc-Badin S, Karray F, Frostegard A, Pernodet J, Simonet P. Erratum to “Development of a conditional lethal system for a Streptomyces lividans strain and its use to investigate conjugative transfer in soil”: [FEMS Microbiology Ecology 38 (2001) 115–121]1 Fems Microbiology Ecology. 40: 83-84. DOI: 10.1016/S0168-6496(02)00199-X |
0.32 |
|
| 2001 |
Courtois S, Frostegård A, Göransson P, Depret G, Jeannin P, Simonet P. Quantification of bacterial subgroups in soil: comparison of DNA extracted directly from soil or from cells previously released by density gradient centrifugation. Environmental Microbiology. 3: 431-9. PMID 11553233 DOI: 10.1046/J.1462-2920.2001.00208.X |
0.787 |
|
| 2001 |
Demanèche S, Bertolla F, Buret F, Nalin R, Sailland A, Auriol P, Vogel TM, Simonet P. Laboratory-scale evidence for lightning-mediated gene transfer in soil. Applied and Environmental Microbiology. 67: 3440-4. PMID 11472916 DOI: 10.1128/Aem.67.8.3440-3444.2001 |
0.793 |
|
| 2001 |
Demanèche S, Kay E, Gourbière F, Simonet P. Natural transformation of Pseudomonas fluorescens and Agrobacterium tumefaciens in soil. Applied and Environmental Microbiology. 67: 2617-2621. PMID 11375171 DOI: 10.1128/Aem.67.6.2617-2621.2001 |
0.466 |
|
| 2001 |
Demanèche S, Jocteur-Monrozier L, Quiquampoix H, Simonet P. Evaluation of biological and physical protection against nuclease degradation of clay-bound plasmid DNA. Applied and Environmental Microbiology. 67: 293-9. PMID 11133458 DOI: 10.1128/Aem.67.1.293-299.2001 |
0.456 |
|
| 2001 |
Clerc-Bardin S, Karray F, Frostegard A, Pernodet J, Simonet P. Development of a conditional lethal system for a Streptomyces lividans strain and its use to investigate conjugative transfer in soil Fems Microbiology Ecology. 38: 115-121. DOI: 10.1111/J.1574-6941.2001.Tb00889.X |
0.436 |
|
| 2000 |
Bertolla F, Pepin R, Passelegue-Robe E, Paget E, Simkin A, Nesme X, Simonet P. Plant genome complexity may be a factor limiting in situ the transfer of transgenic plant genes to the phytopathogen Ralstonia solanacearum Applied and Environmental Microbiology. 66: 4161-4167. PMID 10966449 DOI: 10.1128/Aem.66.9.4161-4167.2000 |
0.811 |
|
| 2000 |
Bertolla F, Kay E, Simonet P. Potential dissemination of antibiotic resistance genes from transgenic plants to microorganisms. Infection Control and Hospital Epidemiology. 21: 390-3. PMID 10879570 DOI: 10.1086/501779 |
0.814 |
|
| 2000 |
Frostegård A, Courtois S, Ramisse V, Clerc S, Bernillon D, Le Gall F, Jeannin P, Nesme X, Simonet P. Quantification of bias related to the extraction of DNA directly from soils. Applied and Environmental Microbiology. 65: 5409-20. PMID 10583997 DOI: 10.1128/Aem.65.12.5409-5420.1999 |
0.796 |
|
| 2000 |
Poly F, Chenu C, Simonet P, Rouiller J, Monrozier LJ. Differences between linear chromosomal and supercoiled plasmid DNA in their mechanisms and extent of adsorption on clay minerals Langmuir. 16: 1233-1238. DOI: 10.1021/La990506Z |
0.339 |
|
| 1999 |
Simonet P, Navarro E, Rouvier C, Reddell P, Zimpfer J, Dommergues Y, Bardin R, Combarro P, Hamelin J, Domenach AM, Gourbière F, Prin Y, Dawson JO, Normand P. Co-evolution between Frankia populations and host plants in the family Casuarinaceae and consequent patterns of global dispersal. Environmental Microbiology. 1: 525-33. PMID 11207774 DOI: 10.1046/J.1462-2920.1999.00068.X |
0.799 |
|
| 1999 |
Navarro E, Jaffré T, Gauthier D, Gourbiere F, Rinaudo G, Simonet P, Normand P. Distribution of Gymnostoma spp. microsymbiotic Frankia strains in New Caledonia is related to soil type and to host-plant species Molecular Ecology. 8: 1781-1788. PMID 10620222 DOI: 10.1046/J.1365-294X.1999.00742.X |
0.463 |
|
| 1999 |
Bertolla F, Simonet P. Horizontal gene transfers in the environment: natural transformation as a putative process for gene transfers between transgenic plants and microorganisms. Research in Microbiology. 150: 375-84. PMID 10466405 DOI: 10.1016/S0923-2508(99)80072-2 |
0.804 |
|
| 1999 |
Nalin R, Simonet P, Vogel TM, Normand P. Rhodanobacter lindaniclasticus gen. nov., sp. nov., a lindane-degrading bacterium. International Journal of Systematic Bacteriology. 49: 19-23. PMID 10028243 DOI: 10.1099/00207713-49-1-19 |
0.341 |
|
| 1999 |
Nalin R, Normand P, Simonet P, Domenach AM. Polymerase chain reaction and hybridization on DNA extracted from soil as a tool for Frankia spp. population distribution studies in soil Botany. 77: 1239-1247. DOI: 10.1139/B99-065 |
0.457 |
|
| 1999 |
Bertolla F, Frostegård Å, Brito B, Nesme X, Simonet P. During Infection of Its Host, the Plant Pathogen Ralstonia solanacearum Naturally Develops a State of Competence and Exchanges Genetic Material Molecular Plant-Microbe Interactions®. 12: 467-472. DOI: 10.1094/Mpmi.1999.12.5.467 |
0.802 |
|
| 1999 |
Bertolla F, Simonet P. Plantes — microbes: une relation sous surveillance Biofutur. 1999: 20-22. DOI: 10.1016/S0294-3506(99)80118-5 |
0.769 |
|
| 1998 |
Clerc S, Simonet P. A review of available systems to investigate transfer of DNA to indigenous soil bacteria Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology. 73: 15-23. PMID 9602275 DOI: 10.1023/A:1000747310461 |
0.807 |
|
| 1998 |
Bertolla F, Van Gijsegem F, Nesme X, Simonet P. Conditions for natural transformation of Ralstonia solanacearum. Applied and Environmental Microbiology. 63: 4965-8. PMID 9406418 DOI: 10.1128/Aem.63.12.4965-4968.1997 |
0.779 |
|
| 1998 |
Navarro E, Rouvier C, Normand P, Domenach AM, Simonet P, Prin Y. Evolution of Frankia-Casuarinaceae interactions Genetics Selection Evolution. 30: 1-16. DOI: 10.1186/1297-9686-30-S1-S357 |
0.744 |
|
| 1998 |
Paget E, Lebrun M, Freyssinet G, Simonet P. The fate of recombinant plant DNA in soil European Journal of Soil Biology. 34: 81-88. DOI: 10.1016/S1164-5563(99)90005-5 |
0.55 |
|
| 1997 |
Paget E, Simonet P. Development of engineered genomic DNA to monitor the natural transformation of Pseudomonas stutzeri in soil-like microcosms Canadian Journal of Microbiology. 43: 78-84. DOI: 10.1139/M97-011 |
0.836 |
|
| 1996 |
Rouvier C, Prin Y, Reddell P, Normand P, Simonet P. Genetic diversity among Frankia strains nodulating members of the family Casuarinaceae in Australia revealed by PCR and restriction fragment length polymorphism analysis with crushed root nodules. Applied and Environmental Microbiology. 62: 979-85. PMID 8975625 DOI: 10.1128/Aem.62.3.979-985.1996 |
0.787 |
|
| 1996 |
Thomas JC, Berger F, Jacquier M, Bernillon D, Baud-Grasset F, Truffaut N, Normand P, Vogel TM, Simonet P. Isolation and characterization of a novel gamma-hexachlorocyclohexane-degrading bacterium. Journal of Bacteriology. 178: 6049-55. PMID 8830705 DOI: 10.1128/Jb.178.20.6049-6055.1996 |
0.404 |
|
| 1996 |
Clerc S, Simonet P. Efficiency of the transfer of a pSAM2-derivative plasmid between two strains of Streptomyces lividans in conditions ranging from agar slants to non-sterile soil microcosms Fems Microbiology Ecology. 21: 157-165. DOI: 10.1111/J.1574-6941.1996.Tb00343.X |
0.805 |
|
| 1996 |
Rouvier C, Schwencke J, Prin Y, Navarro E, Benoist P, Müller A, Girgis M, Selim S, Reddell P, Gauthier D, Rinaudo G, Normand P, Simonet P. Biologie et diversité génétique des souches de Frankia associées aux Casuarinacées Acta Botanica Gallica. 143: 567-580. DOI: 10.1080/12538078.1996.10515359 |
0.793 |
|
| 1994 |
Simonet P, Bosco M, Chapelon C, Moiroud A, Normand P. Molecular characterization of Frankia microsymbionts from spore-positive and spore-negative nodules in a natural alder stand. Applied and Environmental Microbiology. 60: 1335-1341. PMID 8017920 DOI: 10.1128/Aem.60.4.1335-1341.1994 |
0.438 |
|
| 1994 |
Paget E, Simonet P. On the track of natural transformation in soil Fems Microbiology Ecology. 15: 109-117. DOI: 10.1111/J.1574-6941.1994.Tb00235.X |
0.843 |
|
| 1993 |
Recorbet G, Picard C, Normand P, Simonet P. Kinetics of the persistence of chromosomal DNA from genetically engineered Escherichia coli introduced into soil. Applied and Environmental Microbiology. 59: 4289-4294. PMID 8285718 DOI: 10.1128/Aem.59.12.4289-4294.1993 |
0.432 |
|
| 1992 |
Normand P, Gouy M, Cournoyer B, Simonet P. Nucleotide sequence of nifD from Frankia alni strain ArI3: phylogenetic inferences. Molecular Biology and Evolution. 9: 495-506. PMID 1584016 DOI: 10.1093/Oxfordjournals.Molbev.A040737 |
0.36 |
|
| 1992 |
Picard C, Ponsonnet C, Paget E, Nesme X, Simonet P. Detection and enumeration of bacteria in soil by direct DNA extraction and polymerase chain reaction. Applied and Environmental Microbiology. 58: 2717-22. PMID 1444380 DOI: 10.1128/Aem.58.9.2717-2722.1992 |
0.826 |
|
| 1992 |
Normand P, Cournoyer B, Simonet P, Nazaret S. Analysis of a ribosomal RNA operon in the actinomycete Frankia. Gene. 111: 119-24. PMID 1372279 DOI: 10.1016/0378-1119(92)90612-S |
0.689 |
|
| 1992 |
Bosco M, Fernandez MP, Simonet P, Materassi R, Normand P. Evidence that some Frankia sp. strains are able to cross boundaries between Alnus and Elaeagnus host specificity groups. Applied and Environmental Microbiology. 58: 1569-76. PMID 1352442 DOI: 10.1128/Aem.58.5.1569-1576.1992 |
0.427 |
|
| 1992 |
Navarro E, Simonet P, Normand P, Bardin R. Characterization of natural populations of Nitrobacter spp. using PCR/RFLP analysis of the ribosomal intergenic spacer. Archives of Microbiology. 157: 107-115. PMID 1347989 DOI: 10.1007/Bf00245277 |
0.427 |
|
| 1992 |
Nick G, Paget E, Simonet P, Moiroud A, Normand P. The nodular endophytes of Coriaria spp. form a distinct lineage within the genus Frankia. Molecular Ecology. 1: 175-181. PMID 1344993 DOI: 10.1111/J.1365-294X.1992.Tb00173.X |
0.403 |
|
| 1992 |
Paget E, Monrozier LJ, Simonet P. Adsorption of DNA on clay minerals: protection against DNaseI and influence on gene transfer Fems Microbiology Letters. 97: 31-39. DOI: 10.1111/J.1574-6968.1992.Tb05435.X |
0.817 |
|
| 1991 |
Nazaret S, Cournoyer B, Normand P, Simonet P. Phylogenetic relationships among Frankia genomic species determined by use of amplified 16S rDNA sequences. Journal of Bacteriology. 173: 4072-8. PMID 2061287 DOI: 10.1128/Jb.173.13.4072-4078.1991 |
0.708 |
|
| 1991 |
Simonet P, Grosjean MC, Misra AK, Nazaret S, Cournoyer B, Normand P. Frankia genus-specific characterization by polymerase chain reaction. Applied and Environmental Microbiology. 57: 3278-86. PMID 1781685 DOI: 10.1128/Aem.57.11.3278-3286.1991 |
0.701 |
|
| 1990 |
Simonet P, Normand P, Moiroud A, Bardin R. Identification of Frankia strains in nodules by hybridization of polymerase chain reaction products with strain-specific oligonucleotide probes. Archives of Microbiology. 153: 235-240. PMID 2334247 DOI: 10.1007/Bf00249074 |
0.389 |
|
| 1989 |
Nazaret S, Simonet P, Normand P, Bardin R. Genetic diversity among Frankia isolated from Casuarina nodules Plant and Soil. 118: 241-247. DOI: 10.1007/Bf02232812 |
0.71 |
|
| 1989 |
Simonet P, Thi Le N, Moiroud A, Bardin R. Diversity ofFrankia strains isolated from a single alder stand Plant and Soil. 118: 13-22. DOI: 10.1007/Bf02232786 |
0.443 |
|
| 1988 |
Normand P, Simonet P, Bardin R. Conservation of nif sequences in Frankia Molecular Genetics and Genomics. 213: 238-246. PMID 3185502 DOI: 10.1007/Bf00339587 |
0.345 |
|
| 1988 |
Simonet P, Normand P, Bardin R. Heterologous hybridization of Frankia DNA to Rhizobium meliloti and Klebsiella pneumoniae nif genes Fems Microbiology Letters. 55: 141-146. DOI: 10.1111/J.1574-6968.1988.Tb13923.X |
0.414 |
|
| 1987 |
Normand P, Simonet P, Giasson L, Ravel-Chapius P, Fortin JA, Lalonde M. Presence of a linear plasmid-like DNA molecule in the fungal pathogen Ceratocystis fimbriata Ell. & Halst. Current Genetics. 11: 335-338. DOI: 10.1007/Bf00355410 |
0.379 |
|
| 1986 |
Simonet P, Haurat J, Normand P, Bardin R, Moiroud A. Localization of nif genes on a large plasmid in Frankia sp. strain ULQ0132105009 Molecular Genetics and Genomics. 204: 492-495. DOI: 10.1007/Bf00331030 |
0.43 |
|
| 1984 |
Simonet P, Capellano A, Navarro E, Bardin R, Moiroud A. An improved method for lysis of Frankia with acharomopeptidase allows detection of new plasmids Canadian Journal of Microbiology. 30: 1292-1295. DOI: 10.1139/M84-205 |
0.317 |
|
| 1983 |
Normand P, Simonet P, Butour JL, Rosenberg C, Moiroud A, Lalonde M. Plasmids in Frankia sp. Journal of Bacteriology. 155: 32-5. PMID 6863219 DOI: 10.1128/Jb.155.1.32-35.1983 |
0.357 |
|
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