Rosana Collepardo-Guevara - Publications

Affiliations: 
University of Cambridge, UK, Cambridge, England, United Kingdom 
Area:
Chromatin structure, biomolecular modelling and simulation, coarse-grained models, multi-scale modelling

25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Collepardo-Guevara R, Joseph JA, Wales DJ. Energy landscapes and heat capacity signatures for peptides correlate with phase separation propensity. Qrb Discovery. 4: e7. PMID 37771761 DOI: 10.1017/qrd.2023.5  0.389
2021 Joseph JA, Espinosa JR, Sanchez-Burgos I, Garaizar A, Frenkel D, Collepardo-Guevara R. Thermodynamics and kinetics of phase separation of protein-RNA mixtures by a minimal model. Biophysical Journal. PMID 33571491 DOI: 10.1016/j.bpj.2021.01.031  0.389
2020 Sandoval-Pérez A, Berger RML, Garaizar A, Farr SE, Brehm MA, König G, Schneider SW, Collepardo-Guevara R, Huck V, Rädler JO, Aponte-Santamaría C. DNA binds to a specific site of the adhesive blood-protein von Willebrand factor guided by electrostatic interactions. Nucleic Acids Research. PMID 32496552 DOI: 10.1093/Nar/Gkaa466  0.334
2020 Espinosa JR, Joseph JA, Sanchez-Burgos I, Garaizar A, Frenkel D, Collepardo-Guevara R. Liquid network connectivity regulates the stability and composition of biomolecular condensates with many components. Proceedings of the National Academy of Sciences of the United States of America. PMID 32482873 DOI: 10.1073/Pnas.1917569117  0.476
2020 Sridhar A, Orozco M, Collepardo-Guevara R. Protein disorder-to-order transition enhances the nucleosome-binding affinity of H1. Nucleic Acids Research. PMID 32356891 DOI: 10.1093/Nar/Gkaa285  0.372
2020 Sridhar A, Farr SE, Portella G, Schlick T, Orozco M, Collepardo-Guevara R. Emergence of chromatin hierarchical loops from protein disorder and nucleosome asymmetry. Proceedings of the National Academy of Sciences of the United States of America. PMID 32165536 DOI: 10.1073/Pnas.1910044117  0.572
2019 Espinosa JR, Garaizar A, Vega C, Frenkel D, Collepardo-Guevara R. Breakdown of the law of rectilinear diameter and related surprises in the liquid-vapor coexistence in systems of patchy particles. The Journal of Chemical Physics. 150: 224510. PMID 31202247 DOI: 10.1063/1.5098551  0.427
2019 Sridhar A, Farr S, Portella G, Schlick T, Orozco M, Collepardo-Guevara R. Chromatin Structure Regulation by an Epigenetic Switch Tuning the Flexibility of the H1 C-Terminal Domain Biophysical Journal. 116: 70a. DOI: 10.1016/J.Bpj.2018.11.420  0.516
2015 Collepardo-Guevara R, Portella G, Vendruscolo M, Frenkel D, Schlick T, Orozco M. Chromatin Unfolding by Epigenetic Modifications Explained by Dramatic Impairment of Internucleosome Interactions: A Multiscale Computational Study. Journal of the American Chemical Society. 137: 10205-15. PMID 26192632 DOI: 10.1021/Jacs.5B04086  0.642
2015 Ozer G, Collepardo-Guevara R, Schlick T. Forced unraveling of chromatin fibers with nonuniform linker DNA lengths. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 27: 064113. PMID 25564319 DOI: 10.1088/0953-8984/27/6/064113  0.569
2014 Chakraborty D, Collepardo-Guevara R, Wales DJ. Energy landscapes, folding mechanisms, and kinetics of RNA tetraloop hairpins. Journal of the American Chemical Society. 136: 18052-61. PMID 25453221 DOI: 10.1021/Ja5100756  0.495
2014 Arcella A, Portella G, Collepardo-Guevara R, Chakraborty D, Wales DJ, Orozco M. Structure and properties of DNA in apolar solvents. The Journal of Physical Chemistry. B. 118: 8540-8. PMID 24968001 DOI: 10.1021/Jp503816R  0.484
2014 Luque A, Collepardo-Guevara R, Grigoryev S, Schlick T. Dynamic condensation of linker histone C-terminal domain regulates chromatin structure. Nucleic Acids Research. 42: 7553-60. PMID 24906881 DOI: 10.1093/Nar/Gku491  0.587
2014 Collepardo-Guevara R, Schlick T. Chromatin fiber polymorphism triggered by variations of DNA linker lengths. Proceedings of the National Academy of Sciences of the United States of America. 111: 8061-6. PMID 24847063 DOI: 10.1073/Pnas.1315872111  0.558
2013 Hospital A, Faustino I, Collepardo-Guevara R, González C, Gelpí JL, Orozco M. NAFlex: a web server for the study of nucleic acid flexibility. Nucleic Acids Research. 41: W47-55. PMID 23685436 DOI: 10.1093/Nar/Gkt378  0.325
2013 Collepardo-Guevara R, Schlick T. Insights into chromatin fibre structure by in vitro and in silico single-molecule stretching experiments. Biochemical Society Transactions. 41: 494-500. PMID 23514142 DOI: 10.1042/Bst20120349  0.565
2012 Collepardo-Guevara R, Schlick T. Crucial role of dynamic linker histone binding and divalent ions for DNA accessibility and gene regulation revealed by mesoscale modeling of oligonucleosomes. Nucleic Acids Research. 40: 8803-17. PMID 22790986 DOI: 10.1093/Nar/Gks600  0.572
2011 Collepardo-Guevara R, Schlick T. The effect of linker histone's nucleosome binding affinity on chromatin unfolding mechanisms. Biophysical Journal. 101: 1670-80. PMID 21961593 DOI: 10.1016/J.Bpj.2011.07.044  0.577
2011 Suleimanov YV, Collepardo-Guevara R, Manolopoulos DE. Bimolecular reaction rates from ring polymer molecular dynamics: application to H + CH4 → H2 + CH3. The Journal of Chemical Physics. 134: 044131. PMID 21280711 DOI: 10.1063/1.3533275  0.558
2011 Schlick T, Collepardo-Guevara R, Halvorsen LA, Jung S, Xiao X. Biomolecularmodeling and simulation: a field coming of age. Quarterly Reviews of Biophysics. 44: 191-228. PMID 21226976 DOI: 10.1017/S0033583510000284  0.678
2010 Perišić O, Collepardo-Guevara R, Schlick T. Modeling studies of chromatin fiber structure as a function of DNA linker length. Journal of Molecular Biology. 403: 777-802. PMID 20709077 DOI: 10.1016/J.Jmb.2010.07.057  0.57
2010 Collepardo-Guevara R, Suleimanov YV, Manolopoulos DE. Erratum: “Bimolecular reaction rates from ring polymer molecular dynamics” [J. Chem. Phys. 130, 174713 (2009)] The Journal of Chemical Physics. 133: 049902. DOI: 10.1063/1.3464477  0.539
2009 Collepardo-Guevara R, Suleimanov YV, Manolopoulos DE. Bimolecular reaction rates from ring polymer molecular dynamics. The Journal of Chemical Physics. 130: 174713. PMID 19425804 DOI: 10.1063/1.3127145  0.568
2009 Collepardo-Guevara R, Suleimanov YV, Manolopoulos DE. Publisher’s Note: “Bimolecular reaction rates from ring polymer molecular dynamics” [J. Chem. Phys. 130, 174713 (2009)] The Journal of Chemical Physics. 130: 219901. DOI: 10.1063/1.3147536  0.538
2008 Collepardo-Guevara R, Craig IR, Manolopoulos DE. Proton transfer in a polar solvent from ring polymer reaction rate theory. The Journal of Chemical Physics. 128: 144502. PMID 18412454 DOI: 10.1063/1.2883593  0.556
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