Mitchell L. Sogin, Ph.D. - Publications

Affiliations: 
Marine Biological Laboratory, Falmouth, MA, United States 
 Molecular Biology, Cell Biology and Biochemistry Brown University, Providence, RI 
Area:
Phylogenetics, Evolution

223 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Kleindienst S, Seidel M, Ziervogel K, Grim S, Loftis K, Harrison S, Malkin SY, Perkins MJ, Field J, Sogin ML, Dittmar T, Passow U, Medeiros P, Joye SB. Reply to Prince et al.: Ability of chemical dispersants to reduce oil spill impacts remains unclear. Proceedings of the National Academy of Sciences of the United States of America. PMID 26933220 DOI: 10.1073/Pnas.1600498113  0.56
2016 Madan JC, Hoen AG, Lundgren SN, Farzan SF, Cottingham KL, Morrison HG, Sogin ML, Li H, Moore JH, Karagas MR. Association of Cesarean Delivery and Formula Supplementation With the Intestinal Microbiome of 6-Week-Old Infants. Jama Pediatrics. 1-8. PMID 26752321 DOI: 10.1001/Jamapediatrics.2015.3732  0.56
2016 Kleindienst S, Grim S, Sogin M, Bracco A, Crespo-Medina M, Joye SB. Diverse, rare microbial taxa responded to the Deepwater Horizon deep-sea hydrocarbon plume. The Isme Journal. 10: 400-15. PMID 26230048 DOI: 10.1038/Ismej.2015.121  0.56
2015 Green HC, Fisher JC, McLellan SL, Sogin ML, Shanks OC. Identification of specialists and abundance-occupancy relationships among intestinal bacteria of Aves, Mammalia, and Actinopterygii. Applied and Environmental Microbiology. PMID 26712546 DOI: 10.1128/Aem.02456-15  0.68
2015 Kleindienst S, Seidel M, Ziervogel K, Grim S, Loftis K, Harrison S, Malkin SY, Perkins MJ, Field J, Sogin ML, Dittmar T, Passow U, Medeiros PM, Joye SB. Chemical dispersants can suppress the activity of natural oil-degrading microorganisms. Proceedings of the National Academy of Sciences of the United States of America. PMID 26553985 DOI: 10.1073/Pnas.1507380112  0.56
2015 Eren AM, Esen ÖC, Quince C, Vineis JH, Morrison HG, Sogin ML, Delmont TO. Anvi'o: an advanced analysis and visualization platform for 'omics data. Peerj. 3: e1319. PMID 26500826 DOI: 10.7717/Peerj.1319  0.56
2015 Walsh EA, Kirkpatrick JB, Rutherford SD, Smith DC, Sogin M, D'Hondt S. Bacterial diversity and community composition from seasurface to subseafloor. The Isme Journal. PMID 26430855 DOI: 10.1038/Ismej.2015.175  0.56
2015 Fisher JC, Eren AM, Green HC, Shanks OC, Morrison HG, Vineis JH, Sogin ML, McLellan SL. Comparison of sewage and animal fecal microbiomes using oligotyping reveals potential human fecal indicators in multiple taxonomic groups. Applied and Environmental Microbiology. PMID 26231648 DOI: 10.1128/Aem.01524-15  0.56
2015 Hoen AG, Li J, Moulton LA, O'Toole GA, Housman ML, Koestler DC, Guill MF, Moore JH, Hibberd PL, Morrison HG, Sogin ML, Karagas MR, Madan JC. Associations between Gut Microbial Colonization in Early Life and Respiratory Outcomes in Cystic Fibrosis. The Journal of Pediatrics. 167: 138-147.e3. PMID 25818499 DOI: 10.1016/J.Jpeds.2015.02.049  0.56
2015 Anderson RE, Sogin ML, Baross JA. Biogeography and ecology of the rare and abundant microbial lineages in deep-sea hydrothermal vents. Fems Microbiology Ecology. 91: 1-11. PMID 25764538 DOI: 10.1093/Femsec/Fiu016  0.56
2015 Newton RJ, McLellan SL, Dila DK, Vineis JH, Morrison HG, Eren AM, Sogin ML. Sewage reflects the microbiomes of human populations. Mbio. 6: e02574. PMID 25714718 DOI: 10.1128/Mbio.02574-14  0.56
2015 Eren AM, Morrison HG, Lescault PJ, Reveillaud J, Vineis JH, Sogin ML. Minimum entropy decomposition: unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences. The Isme Journal. 9: 968-79. PMID 25325381 DOI: 10.1038/Ismej.2014.195  0.56
2015 Eren AM, Sogin ML, Morrison HG, Vineis JH, Fisher JC, Newton RJ, McLellan SL. A single genus in the gut microbiome reflects host preference and specificity. The Isme Journal. 9: 90-100. PMID 24936765 DOI: 10.1038/Ismej.2014.97  0.56
2015 Walsh EA, Smith DC, Sogin ML, D'Hondt S. Bacterial and archaeal biogeography of the deep chlorophyll maximum in the South Pacific Gyre Aquatic Microbial Ecology. 75: 1-13. DOI: 10.3354/Ame01746  0.56
2014 Willger SD, Grim SL, Dolben EL, Shipunova A, Hampton TH, Morrison HG, Filkins LM, O'Toole GA, Moulton LA, Ashare A, Sogin ML, Hogan DA. Characterization and quantification of the fungal microbiome in serial samples from individuals with cystic fibrosis. Microbiome. 2: 40. PMID 25408892 DOI: 10.1186/2049-2618-2-40  0.56
2014 Chernikova DA, Koestler DC, Hoen AG, Housman ML, Hibberd PL, Moore JH, Morrison HG, Sogin ML, Zain-Ul-Abideen M, Madan JC. Fetal exposures and perinatal influences on the stool microbiota of premature infants. The Journal of Maternal-Fetal & Neonatal Medicine : the Official Journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians. 1-7. PMID 25394613 DOI: 10.3109/14767058.2014.987748  0.56
2014 Anderson RE, Sogin ML, Baross JA. Evolutionary strategies of viruses, bacteria and archaea in hydrothermal vent ecosystems revealed through metagenomics. Plos One. 9: e109696. PMID 25279954 DOI: 10.1371/Journal.Pone.0109696  0.56
2014 Hampton TH, Green DM, Cutting GR, Morrison HG, Sogin ML, Gifford AH, Stanton BA, O'Toole GA. The microbiome in pediatric cystic fibrosis patients: the role of shared environment suggests a window of intervention. Microbiome. 2: 14. PMID 25071935 DOI: 10.1186/2049-2618-2-14  0.56
2014 Celaj S, Gleeson MW, Deng J, O'Toole GA, Hampton TH, Toft MF, Morrison HG, Sogin ML, Putra J, Suriawinata AA, Gorham JD. The microbiota regulates susceptibility to Fas-mediated acute hepatic injury. Laboratory Investigation; a Journal of Technical Methods and Pathology. 94: 938-49. PMID 25068658 DOI: 10.1038/Labinvest.2014.93  0.56
2014 Ferreira AJ, Siam R, Setubal JC, Moustafa A, Sayed A, Chambergo FS, Dawe AS, Ghazy MA, Sharaf H, Ouf A, Alam I, Abdel-Haleem AM, Lehvaslaiho H, Ramadan E, Antunes A, ... ... Sogin M, et al. Core microbial functional activities in ocean environments revealed by global metagenomic profiling analyses. Plos One. 9: e97338. PMID 24921648 DOI: 10.1371/Journal.Pone.0097338  0.56
2014 Maltz MA, Bomar L, Lapierre P, Morrison HG, McClure EA, Sogin ML, Graf J. Metagenomic analysis of the medicinal leech gut microbiota. Frontiers in Microbiology. 5: 151. PMID 24860552 DOI: 10.3389/Fmicb.2014.00151  0.56
2014 Halliday E, McLellan SL, Amaral-Zettler LA, Sogin ML, Gast RJ. Comparison of bacterial communities in sands and water at beaches with bacterial water quality violations. Plos One. 9: e90815. PMID 24599478 DOI: 10.1371/Journal.Pone.0090815  0.56
2014 Huse SM, Young VB, Morrison HG, Antonopoulos DA, Kwon J, Dalal S, Arrieta R, Hubert NA, Shen L, Vineis JH, Koval JC, Sogin ML, Chang EB, Raffals LE. Comparison of brush and biopsy sampling methods of the ileal pouch for assessment of mucosa-associated microbiota of human subjects. Microbiome. 2: 5. PMID 24529162 DOI: 10.1186/2049-2618-2-5  0.56
2014 Huse SM, Mark Welch DB, Voorhis A, Shipunova A, Morrison HG, Eren AM, Sogin ML. VAMPS: a website for visualization and analysis of microbial population structures. Bmc Bioinformatics. 15: 41. PMID 24499292 DOI: 10.1186/1471-2105-15-41  0.56
2014 Reveillaud J, Maignien L, Murat Eren A, Huber JA, Apprill A, Sogin ML, Vanreusel A. Host-specificity among abundant and rare taxa in the sponge microbiome. The Isme Journal. 8: 1198-209. PMID 24401862 DOI: 10.1038/Ismej.2013.227  0.56
2014 Gifford AH, Alexandru DM, Li Z, Dorman DB, Moulton LA, Price KE, Hampton TH, Sogin ML, Zuckerman JB, Parker HW, Stanton BA, O'Toole GA. Iron supplementation does not worsen respiratory health or alter the sputum microbiome in cystic fibrosis. Journal of Cystic Fibrosis : Official Journal of the European Cystic Fibrosis Society. 13: 311-8. PMID 24332997 DOI: 10.1016/J.Jcf.2013.11.004  0.56
2014 Eren AM, Morrison HG, Huse SM, Sogin ML. DRISEE overestimates errors in metagenomic sequencing data. Briefings in Bioinformatics. 15: 783-7. PMID 23698723 DOI: 10.1093/Bib/Bbt010  0.56
2013 Young VB, Raffals LH, Huse SM, Vital M, Dai D, Schloss PD, Brulc JM, Antonopoulos DA, Arrieta RL, Kwon JH, Reddy KG, Hubert NA, Grim SL, Vineis JH, Dalal S, ... ... Sogin ML, et al. Multiphasic analysis of the temporal development of the distal gut microbiota in patients following ileal pouch anal anastomosis. Microbiome. 1: 9. PMID 24451366 DOI: 10.1186/2049-2618-1-9  0.56
2013 Vital M, Penton CR, Wang Q, Young VB, Antonopoulos DA, Sogin ML, Morrison HG, Raffals L, Chang EB, Huffnagle GB, Schmidt TM, Cole JR, Tiedje JM. A gene-targeted approach to investigate the intestinal butyrate-producing bacterial community. Microbiome. 1: 8. PMID 24451334 DOI: 10.1186/2049-2618-1-8  0.56
2013 Price KE, Hampton TH, Gifford AH, Dolben EL, Hogan DA, Morrison HG, Sogin ML, O'Toole GA. Unique microbial communities persist in individual cystic fibrosis patients throughout a clinical exacerbation. Microbiome. 1: 27. PMID 24451123 DOI: 10.1186/2049-2618-1-27  0.56
2013 Eren AM, Maignien L, Sul WJ, Murphy LG, Grim SL, Morrison HG, Sogin ML. Oligotyping: Differentiating between closely related microbial taxa using 16S rRNA gene data. Methods in Ecology and Evolution / British Ecological Society. 4. PMID 24358444 DOI: 10.1111/2041-210X.12114  0.56
2013 Newton RJ, Huse SM, Morrison HG, Peake CS, Sogin ML, McLellan SL. Shifts in the microbial community composition of Gulf Coast beaches following beach oiling. Plos One. 8: e74265. PMID 24040219 DOI: 10.1371/Journal.Pone.0074265  0.56
2013 Eren AM, Vineis JH, Morrison HG, Sogin ML. A filtering method to generate high quality short reads using illumina paired-end technology. Plos One. 8: e66643. PMID 23799126 DOI: 10.1371/Journal.Pone.0066643  0.56
2013 Newton RJ, Bootsma MJ, Morrison HG, Sogin ML, McLellan SL. A microbial signature approach to identify fecal pollution in the waters off an urbanized coast of Lake Michigan. Microbial Ecology. 65: 1011-23. PMID 23475306 DOI: 10.1007/S00248-013-0200-9  0.56
2013 McLellan SL, Newton RJ, Vandewalle JL, Shanks OC, Huse SM, Eren AM, Sogin ML. Sewage reflects the distribution of human faecal Lachnospiraceae. Environmental Microbiology. 15: 2213-27. PMID 23438335 DOI: 10.1111/1462-2920.12092  0.56
2013 Shanks OC, Newton RJ, Kelty CA, Huse SM, Sogin ML, McLellan SL. Comparison of the microbial community structures of untreated wastewaters from different geographic locales. Applied and Environmental Microbiology. 79: 2906-13. PMID 23435885 DOI: 10.1128/Aem.03448-12  0.56
2013 Sul WJ, Oliver TA, Ducklow HW, Amaral-Zettler LA, Sogin ML. Marine bacteria exhibit a bipolar distribution. Proceedings of the National Academy of Sciences of the United States of America. 110: 2342-7. PMID 23324742 DOI: 10.1073/Pnas.1212424110  0.56
2013 Murat Eren A, Vineis JH, Morrison HG, Sogin ML. Correction: A Filtering method to generate high quality short reads using illumina paired-end technology (PLoS ONE) Plos One. 8. DOI: 10.1371/Annotation/Afa5C40D-C604-46Ae-84C4-82Cb92193A5E  0.56
2013 Amend AS, Oliver TA, Amaral-Zettler LA, Boetius A, Fuhrman JA, Horner-Devine MC, Huse SM, Welch DBM, Martiny AC, Ramette A, Zinger L, Sogin ML, Martiny JBH. Macroecological patterns of marine bacteria on a global scale Journal of Biogeography. 40: 800-811. DOI: 10.1111/Jbi.12034  0.56
2012 Madan JC, Koestler DC, Stanton BA, Davidson L, Moulton LA, Housman ML, Moore JH, Guill MF, Morrison HG, Sogin ML, Hampton TH, Karagas MR, Palumbo PE, Foster JA, Hibberd PL, et al. Serial analysis of the gut and respiratory microbiome in cystic fibrosis in infancy: interaction between intestinal and respiratory tracts and impact of nutritional exposures. Mbio. 3. PMID 22911969 DOI: 10.1128/Mbio.00251-12  0.56
2012 Filkins LM, Hampton TH, Gifford AH, Gross MJ, Hogan DA, Sogin ML, Morrison HG, Paster BJ, O'Toole GA. Prevalence of streptococci and increased polymicrobial diversity associated with cystic fibrosis patient stability. Journal of Bacteriology. 194: 4709-17. PMID 22753064 DOI: 10.1128/Jb.00566-12  0.56
2012 Bowen JL, Morrison HG, Hobbie JE, Sogin ML. Salt marsh sediment diversity: a test of the variability of the rare biosphere among environmental replicates. The Isme Journal. 6: 2014-23. PMID 22739491 DOI: 10.1038/Ismej.2012.47  0.56
2012 Madan JC, Salari RC, Saxena D, Davidson L, O'Toole GA, Moore JH, Sogin ML, Foster JA, Edwards WH, Palumbo P, Hibberd PL. Gut microbial colonisation in premature neonates predicts neonatal sepsis. Archives of Disease in Childhood. Fetal and Neonatal Edition. 97: F456-62. PMID 22562869 DOI: 10.1136/Fetalneonatal-2011-301373  0.56
2012 Vandewalle JL, Goetz GW, Huse SM, Morrison HG, Sogin ML, Hoffmann RG, Yan K, McLellan SL. Acinetobacter, Aeromonas and Trichococcus populations dominate the microbial community within urban sewer infrastructure. Environmental Microbiology. 14: 2538-52. PMID 22524675 DOI: 10.1111/J.1462-2920.2012.02757.X  0.56
2012 Freitas S, Hatosy S, Fuhrman JA, Huse SM, Welch DB, Sogin ML, Martiny AC. Global distribution and diversity of marine Verrucomicrobia. The Isme Journal. 6: 1499-505. PMID 22318305 DOI: 10.1038/Ismej.2012.3  0.56
2012 Gobet A, Böer SI, Huse SM, van Beusekom JE, Quince C, Sogin ML, Boetius A, Ramette A. Diversity and dynamics of rare and of resident bacterial populations in coastal sands. The Isme Journal. 6: 542-53. PMID 21975598 DOI: 10.1038/Ismej.2011.132  0.56
2011 Zinger L, Amaral-Zettler LA, Fuhrman JA, Horner-Devine MC, Huse SM, Welch DB, Martiny JB, Sogin M, Boetius A, Ramette A. Global patterns of bacterial beta-diversity in seafloor and seawater ecosystems. Plos One. 6: e24570. PMID 21931760 DOI: 10.1371/Journal.Pone.0024570  0.56
2011 Bowen JL, Ward BB, Morrison HG, Hobbie JE, Valiela I, Deegan LA, Sogin ML. Microbial community composition in sediments resists perturbation by nutrient enrichment. The Isme Journal. 5: 1540-8. PMID 21412346 DOI: 10.1038/Ismej.2011.22  0.56
2011 Shanks OC, Kelty CA, Archibeque S, Jenkins M, Newton RJ, McLellan SL, Huse SM, Sogin ML. Community structures of fecal bacteria in cattle from different animal feeding operations. Applied and Environmental Microbiology. 77: 2992-3001. PMID 21378055 DOI: 10.1128/Aem.02988-10  0.56
2011 Valm AM, Mark Welch JL, Rieken CW, Hasegawa Y, Sogin ML, Oldenbourg R, Dewhirst FE, Borisy GG. Systems-level analysis of microbial community organization through combinatorial labeling and spectral imaging. Proceedings of the National Academy of Sciences of the United States of America. 108: 4152-7. PMID 21325608 DOI: 10.1073/Pnas.1101134108  0.56
2011 Agogué H, Lamy D, Neal PR, Sogin ML, Herndl GJ. Water mass-specificity of bacterial communities in the North Atlantic revealed by massively parallel sequencing. Molecular Ecology. 20: 258-74. PMID 21143328 DOI: 10.1111/J.1365-294X.2010.04932.X  0.56
2010 Brazelton WJ, Sogin ML, Baross JA. Multiple scales of diversification within natural populations of archaea in hydrothermal chimney biofilms. Environmental Microbiology Reports. 2: 236-42. PMID 23766074 DOI: 10.1111/J.1758-2229.2009.00097.X  0.56
2010 Parfrey LW, Grant J, Tekle YI, Lasek-Nesselquist E, Morrison HG, Sogin ML, Patterson DJ, Katz LA. Broadly sampled multigene analyses yield a well-resolved eukaryotic tree of life. Systematic Biology. 59: 518-33. PMID 20656852 DOI: 10.1093/Sysbio/Syq037  0.56
2010 Huber JA, Cantin HV, Huse SM, Welch DB, Sogin ML, Butterfield DA. Isolated communities of Epsilonproteobacteria in hydrothermal vent fluids of the Mariana Arc seamounts. Fems Microbiology Ecology. 73: 538-49. PMID 20533947 DOI: 10.1111/J.1574-6941.2010.00910.X  0.56
2010 Lasek-Nesselquist E, Welch DM, Sogin ML. The identification of a new Giardia duodenalis assemblage in marine vertebrates and a preliminary analysis of G. duodenalis population biology in marine systems. International Journal For Parasitology. 40: 1063-74. PMID 20361967 DOI: 10.1016/J.Ijpara.2010.02.015  0.56
2010 Huse SM, Welch DM, Morrison HG, Sogin ML. Ironing out the wrinkles in the rare biosphere through improved OTU clustering. Environmental Microbiology. 12: 1889-98. PMID 20236171 DOI: 10.1111/J.1462-2920.2010.02193.X  0.56
2010 Brazelton WJ, Ludwig KA, Sogin ML, Andreishcheva EN, Kelley DS, Shen CC, Edwards RL, Baross JA. Archaea and bacteria with surprising microdiversity show shifts in dominance over 1,000-year time scales in hydrothermal chimneys. Proceedings of the National Academy of Sciences of the United States of America. 107: 1612-7. PMID 20080654 DOI: 10.1073/Pnas.0905369107  0.56
2010 Bodaker I, Sharon I, Suzuki MT, Feingersch R, Shmoish M, Andreishcheva E, Sogin ML, Rosenberg M, Maguire ME, Belkin S, Oren A, Béjà O. Comparative community genomics in the Dead Sea: an increasingly extreme environment. The Isme Journal. 4: 399-407. PMID 20033072 DOI: 10.1038/Ismej.2009.141  0.56
2010 McLellan SL, Huse SM, Mueller-Spitz SR, Andreishcheva EN, Sogin ML. Diversity and population structure of sewage-derived microorganisms in wastewater treatment plant influent. Environmental Microbiology. 12: 378-92. PMID 19840106 DOI: 10.1111/J.1462-2920.2009.02075.X  0.56
2010 Hasegawa Y, Welch JLM, Valm AM, Rieken CW, Sogin ML, Borisy GG. Imaging marine bacteria with unique 16S rRNA V6 sequences by fluorescence in situ hybridization and spectral analysis Geomicrobiology Journal. 27: 251-260. DOI: 10.1080/01490450903456806  0.56
2010 Amaral-Zettler L, Artigas LF, Baross J, Bharathi P.A. L, Boetius A, Chandramohan D, Herndl G, Kogure K, Neal P, Pedrós-Alió C, Ramette A, Schouten S, Stal L, Thessen A, Leeuw JD, ... Sogin M, et al. A Global Census of Marine Microbes Life in the World's Oceans: Diversity, Distribution, and Abundance. 221-245. DOI: 10.1002/9781444325508.ch12  0.56
2009 Lasek-Nesselquist E, Welch DM, Thompson RC, Steuart RF, Sogin ML. Genetic exchange within and between assemblages of Giardia duodenalis. The Journal of Eukaryotic Microbiology. 56: 504-18. PMID 19883439 DOI: 10.1111/J.1550-7408.2009.00443.X  0.56
2009 Antonopoulos DA, Huse SM, Morrison HG, Schmidt TM, Sogin ML, Young VB. Reproducible community dynamics of the gastrointestinal microbiota following antibiotic perturbation. Infection and Immunity. 77: 2367-75. PMID 19307217 DOI: 10.1128/Iai.01520-08  0.56
2009 Huber JA, Morrison HG, Huse SM, Neal PR, Sogin ML, Mark Welch DB. Effect of PCR amplicon size on assessments of clone library microbial diversity and community structure. Environmental Microbiology. 11: 1292-302. PMID 19220394 DOI: 10.1111/J.1462-2920.2008.01857.X  0.56
2009 Turanov AA, Lobanov AV, Fomenko DE, Morrison HG, Sogin ML, Klobutcher LA, Hatfield DL, Gladyshev VN. Genetic code supports targeted insertion of two amino acids by one codon. Science (New York, N.Y.). 323: 259-61. PMID 19131629 DOI: 10.1126/Science.1164748  0.56
2009 Turnbaugh PJ, Hamady M, Yatsunenko T, Cantarel BL, Duncan A, Ley RE, Sogin ML, Jones WJ, Roe BA, Affourtit JP, Egholm M, Henrissat B, Heath AC, Knight R, Gordon JI. A core gut microbiome in obese and lean twins. Nature. 457: 480-4. PMID 19043404 DOI: 10.1038/Nature07540  0.56
2008 Huse SM, Dethlefsen L, Huber JA, Mark Welch D, Welch DM, Relman DA, Sogin ML. Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing. Plos Genetics. 4: e1000255. PMID 19023400 DOI: 10.1371/Journal.Pgen.1000255  0.56
2008 Dethlefsen L, Huse S, Sogin ML, Relman DA. The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. Plos Biology. 6: e280. PMID 19018661 DOI: 10.1371/Journal.Pbio.0060280  0.56
2008 Lasek-Nesselquist E, Bogomolni AL, Gast RJ, Welch DM, Ellis JC, Sogin ML, Moore MJ. Molecular characterization of Giardia intestinalis haplotypes in marine animals: variation and zoonotic potential. Diseases of Aquatic Organisms. 81: 39-51. PMID 18828561 DOI: 10.3354/Dao01931  0.56
2008 Santelli CM, Orcutt BN, Banning E, Bach W, Moyer CL, Sogin ML, Staudigel H, Edwards KJ. Abundance and diversity of microbial life in ocean crust. Nature. 453: 653-6. PMID 18509444 DOI: 10.1038/Nature06899  0.56
2007 Huber JA, Mark Welch DB, Morrison HG, Huse SM, Neal PR, Butterfield DA, Sogin ML. Microbial population structures in the deep marine biosphere. Science (New York, N.Y.). 318: 97-100. PMID 17916733 DOI: 10.1126/Science.1146689  0.56
2007 Morrison HG, McArthur AG, Gillin FD, Aley SB, Adam RD, Olsen GJ, Best AA, Cande WZ, Chen F, Cipriano MJ, Davids BJ, Dawson SC, Elmendorf HG, Hehl AB, Holder ME, ... ... Sogin ML, et al. Genomic minimalism in the early diverging intestinal parasite Giardia lamblia. Science (New York, N.Y.). 317: 1921-6. PMID 17901334 DOI: 10.1126/Science.1143837  0.56
2007 Huse SM, Huber JA, Morrison HG, Sogin ML, Welch DM. Accuracy and quality of massively parallel DNA pyrosequencing. Genome Biology. 8: R143. PMID 17659080 DOI: 10.1186/Gb-2007-8-7-R143  0.56
2006 Beaty DW, Buxbaum KL, Meyer MA, Barlow N, Boynton W, Clark B, Deming J, Doran PT, Edgett K, Hancock S, Head J, Hecht M, Hipkin V, Kieft T, Mancinelli R, ... ... Sogin M, et al. Findings of the Mars Special Regions Science Analysis Group Astrobiology. 6: 677-732. PMID 17067257 DOI: 10.1089/Ast.2006.6.677  0.56
2006 Sogin ML, Morrison HG, Huber JA, Mark Welch D, Huse SM, Neal PR, Arrieta JM, Herndl GJ. Microbial diversity in the deep sea and the underexplored "rare biosphere". Proceedings of the National Academy of Sciences of the United States of America. 103: 12115-20. PMID 16880384 DOI: 10.1073/Pnas.0605127103  0.56
2006 Ley RE, Harris JK, Wilcox J, Spear JR, Miller SR, Bebout BM, Maresca JA, Bryant DA, Sogin ML, Pace NR. Unexpected diversity and complexity of the Guerrero Negro hypersaline microbial mat. Applied and Environmental Microbiology. 72: 3685-95. PMID 16672518 DOI: 10.1128/Aem.72.5.3685-3695.2006  0.56
2006 Biddle JF, Lipp JS, Lever MA, Lloyd KG, Sørensen KB, Anderson R, Fredricks HF, Elvert M, Kelly TJ, Schrag DP, Sogin ML, Brenchley JE, Teske A, House CH, Hinrichs KU. Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru. Proceedings of the National Academy of Sciences of the United States of America. 103: 3846-51. PMID 16505362 DOI: 10.1073/Pnas.0600035103  0.56
2006 Bach W, Edwards KJ, Hayes JM, Sievert SM, Huber JA, Sogin ML. Energy in the dark: Fuel for life in the deep ocean and beyond Eos. 87: 76-78. DOI: 10.1029/2006Eo070002  0.56
2006 D'Andrea WJ, Lage M, Martiny JBH, Laatsch AD, Amaral-Zettler LA, Sogin ML, Huang Y. Alkenone producers inferred from well-preserved 18S rDNA in Greenland lake sediments Journal of Geophysical Research: Biogeosciences. 111. DOI: 10.1029/2005Jg000121  0.56
2005 Dhillon A, Lever M, Lloyd KG, Albert DB, Sogin ML, Teske A. Methanogen diversity evidenced by molecular characterization of methyl coenzyme M reductase A (mcrA) genes in hydrothermal sediments of the Guaymas Basin. Applied and Environmental Microbiology. 71: 4592-601. PMID 16085853 DOI: 10.1128/Aem.71.8.4592-4601.2005  0.56
2005 Bahr M, Crump BC, Klepac-Ceraj V, Teske A, Sogin ML, Hobbie JE. Molecular characterization of sulfate-reducing bacteria in a New England salt marsh. Environmental Microbiology. 7: 1175-85. PMID 16011754 DOI: 10.1111/J.1462-2920.2005.00796.X  0.56
2005 Messerli MA, Amaral-Zettler LA, Zettler E, Jung SK, Smith PJ, Sogin ML. Life at acidic pH imposes an increased energetic cost for a eukaryotic acidophile. The Journal of Experimental Biology. 208: 2569-79. PMID 15961743 DOI: 10.1242/jeb.01660  0.56
2005 Weiland ME, McArthur AG, Morrison HG, Sogin ML, Svärd SG. Annexin-like alpha giardins: a new cytoskeletal gene family in Giardia lamblia. International Journal For Parasitology. 35: 617-26. PMID 15862575 DOI: 10.1016/j.ijpara.2004.12.009  0.56
2005 Dhillon A, Goswami S, Riley M, Teske A, Sogin ML. Domain evolution and functional diversification of sulfite reductases Astrobiology. 5: 18-29. PMID 15711167 DOI: 10.1089/Ast.2005.5.18  0.56
2005 Kysela DT, Palacios C, Sogin ML. Serial analysis of V6 ribosomal sequence tags (SARST-V6): a method for efficient, high-throughput analysis of microbial community composition. Environmental Microbiology. 7: 356-64. PMID 15683396 DOI: 10.1111/j.1462-2920.2004.00712.x  0.56
2005 Noël C, Dufernez F, Gerbod D, Edgcomb VP, Delgado-Viscogliosi P, Ho LC, Singh M, Wintjens R, Sogin ML, Capron M, Pierce R, Zenner L, Viscogliosi E. Molecular phylogenies of Blastocystis isolates from different hosts: implications for genetic diversity, identification of species, and zoonosis. Journal of Clinical Microbiology. 43: 348-55. PMID 15634993 DOI: 10.1128/JCM.43.1.348-355.2005  0.56
2005 Sogin ML. Global effort for marine microbe information Industrial Bioprocessing. 27: 9-10.  0.56
2004 Silva-Pinhati AC, Bacci M, Hinkle G, Sogin ML, Pagnocca FC, Martins VG, Bueno OC, Hebling MJ. Low variation in ribosomal DNA and internal transcribed spacers of the symbiotic fungi of leaf-cutting ants (Attini: Formicidae). Brazilian Journal of Medical and Biological Research = Revista Brasileira De Pesquisas MéDicas E BiolóGicas / Sociedade Brasileira De BiofíSica ... [Et Al.]. 37: 1463-72. PMID 15448866  0.56
2004 Best AA, Morrison HG, McArthur AG, Sogin ML, Olsen GJ. Evolution of eukaryotic transcription: insights from the genome of Giardia lamblia. Genome Research. 14: 1537-47. PMID 15289474 DOI: 10.1101/Gr.2256604  0.56
2004 Powell WH, Morrison HG, Weil EJ, Karchner SI, Sogin ML, Stegeman JJ, Hahn ME. Cloning and analysis of the CYP1A promoter from the atlantic killifish (Fundulus heteroclitus). Marine Environmental Research. 58: 119-24. PMID 15178023 DOI: 10.1016/J.Marenvres.2004.03.005  0.56
2004 Crump BC, Hopkinson CS, Sogin ML, Hobbie JE. Microbial biogeography along an estuarine salinity gradient: combined influences of bacterial growth and residence time. Applied and Environmental Microbiology. 70: 1494-505. PMID 15006771 DOI: 10.1128/Aem.70.3.1494-1505.2004  0.56
2003 O'Kelly CJ, Silberman JD, Amaral Zettler LA, Nerad TA, Sogin ML. Monopylocystis visvesvarai n. gen., n. sp. and Sawyeria marylandensis n. gen., n. sp.: two new amitochondrial heterolobosean amoebae from anoxic environments. Protist. 154: 281-90. PMID 13677454 DOI: 10.1078/143446103322166563  0.56
2003 Peglar MT, Amaral Zettler LA, Anderson OR, Nerad TA, Gillevet PM, Mullen TE, Frasca S, Silberman JD, O'Kelly CJ, Sogin ML. Two new small-subunit ribosomal RNA gene lineages within the subclass gymnamoebia. The Journal of Eukaryotic Microbiology. 50: 224-32. PMID 12836881 DOI: 10.1111/J.1550-7408.2003.Tb00122.X  0.56
2003 Seshadri V, McArthur AG, Sogin ML, Adam RD. Giardia lamblia RNA polymerase II: amanitin-resistant transcription. The Journal of Biological Chemistry. 278: 27804-10. PMID 12734189 DOI: 10.1074/Jbc.M303316200  0.56
2003 Dhillon A, Teske A, Dillon J, Stahl DA, Sogin ML. Molecular characterization of sulfate-reducing bacteria in the Guaymas Basin. Applied and Environmental Microbiology. 69: 2765-72. PMID 12732547 DOI: 10.1128/Aem.69.5.2765-2772.2003  0.56
2003 Amaral Zettler LA, Messerli MA, Laatsch AD, Smith PJ, Sogin ML. From genes to genomes: beyond biodiversity in Spain's Rio Tinto. The Biological Bulletin. 204: 205-9. PMID 12700155 DOI: 10.2307/1543560  0.56
2003 Teske A, Dhillon A, Sogin ML. Genomic markers of ancient anaerobic microbial pathways: sulfate reduction, methanogenesis, and methane oxidation. The Biological Bulletin. 204: 186-91. PMID 12700151 DOI: 10.2307/1543556  0.56
2003 Nixon JE, Field J, McArthur AG, Sogin ML, Yarlett N, Loftus BJ, Samuelson J. Iron-dependent hydrogenases of Entamoeba histolytica and Giardia lamblia: activity of the recombinant entamoebic enzyme and evidence for lateral gene transfer. The Biological Bulletin. 204: 1-9. PMID 12588739 DOI: 10.2307/1543490  0.56
2003 Noël C, Peyronnet C, Gerbod D, Edgcomb VP, Delgado-Viscogliosi P, Sogin ML, Capron M, Viscogliosi E, Zenner L. Phylogenetic analysis of Blastocystis isolates from different hosts based on the comparison of small-subunit rRNA gene sequences. Molecular and Biochemical Parasitology. 126: 119-23. PMID 12554093 DOI: 10.1016/S0166-6851(02)00246-3  0.56
2003 Walker G, Silberman JD, Karpov SA, Preisfeld A, Foster P, Frolov AO, Novozhilov Y, Sogin ML. An ultrastructural and molecular study of Hyperamoeba dachnaya, n. sp., and its relationship to the mycetozoan slime moulds European Journal of Protistology. 39: 319-336. DOI: 10.1078/0932-4739-00906  0.56
2002 Morrison HG, Zamora G, Campbell RK, Sogin ML. Inferring protein function from genomic sequence: Giardia lamblia expresses a phosphatidylinositol kinase-related kinase similar to yeast and mammalian TOR. Comparative Biochemistry and Physiology. Part B, Biochemistry & Molecular Biology. 133: 477-91. PMID 12470813 DOI: 10.1016/S1096-4959(02)00218-X  0.56
2002 Nixon JE, Wang A, Field J, Morrison HG, McArthur AG, Sogin ML, Loftus BJ, Samuelson J. Evidence for lateral transfer of genes encoding ferredoxins, nitroreductases, NADH oxidase, and alcohol dehydrogenase 3 from anaerobic prokaryotes to Giardia lamblia and Entamoeba histolytica. Eukaryotic Cell. 1: 181-90. PMID 12455953 DOI: 10.1128/Ec.1.2.181-190.2002  0.56
2002 Podar M, Mullineaux L, Huang HR, Perlman PS, Sogin ML. Bacterial group II introns in a deep-sea hydrothermal vent environment. Applied and Environmental Microbiology. 68: 6392-8. PMID 12450865 DOI: 10.1128/Aem.68.12.6392-6398.2002  0.56
2002 Gerbod D, Noël C, Dolan MF, Edgcomb VP, Kitade O, Noda S, Dufernez F, Ohkuma M, Kudo T, Capron M, Sogin ML, Viscogliosi E. Molecular phylogeny of parabasalids inferred from small subunit rRNA sequences, with emphasis on the Devescovinidae and Calonymphidae (Trichomonadea). Molecular Phylogenetics and Evolution. 25: 545-56. PMID 12450758 DOI: 10.1016/S1055-7903(02)00300-7  0.56
2002 Simpson AG, Roger AJ, Silberman JD, Leipe DD, Edgcomb VP, Jermiin LS, Patterson DJ, Sogin ML. Evolutionary history of "early-diverging" eukaryotes: the excavate taxon Carpediemonas is a close relative of Giardia. Molecular Biology and Evolution. 19: 1782-91. PMID 12270904 DOI: 10.1093/Oxfordjournals.Molbev.A004000  0.56
2002 Langford TD, Silberman JD, Weiland ME, Svärd SG, McCaffery JM, Sogin ML, Gillin FD. Giardia lamblia: identification and characterization of Rab and GDI proteins in a genome survey of the ER to Golgi endomembrane system. Experimental Parasitology. 101: 13-24. PMID 12243734 DOI: 10.1016/S0014-4894(02)00037-1  0.56
2002 Edgcomb VP, Kysela DT, Teske A, de Vera Gomez A, Sogin ML. Benthic eukaryotic diversity in the Guaymas Basin hydrothermal vent environment. Proceedings of the National Academy of Sciences of the United States of America. 99: 7658-62. PMID 12032339 DOI: 10.1073/Pnas.062186399  0.56
2002 Edgcomb VP, Simpson AG, Zettler LA, Nerad TA, Patterson DJ, Holder ME, Sogin ML. Pelobionts are degenerate protists: insights from molecules and morphology. Molecular Biology and Evolution. 19: 978-82. PMID 12032256 DOI: 10.1093/Oxfordjournals.Molbev.A004157  0.56
2002 Amaral Zettler LA, Gómez F, Zettler E, Keenan BG, Amils R, Sogin ML. Microbiology: eukaryotic diversity in Spain's River of Fire. Nature. 417: 137. PMID 12000949 DOI: 10.1038/417137A  0.56
2002 Teske A, Hinrichs KU, Edgcomb V, de Vera Gomez A, Kysela D, Sylva SP, Sogin ML, Jannasch HW. Microbial diversity of hydrothermal sediments in the Guaymas Basin: evidence for anaerobic methanotrophic communities. Applied and Environmental Microbiology. 68: 1994-2007. PMID 11916723 DOI: 10.1128/Aem.68.4.1994-2007.2002  0.56
2002 Nixon JE, Wang A, Morrison HG, McArthur AG, Sogin ML, Loftus BJ, Samuelson J. A spliceosomal intron in Giardia lamblia. Proceedings of the National Academy of Sciences of the United States of America. 99: 3701-5. PMID 11854456 DOI: 10.1073/Pnas.042700299  0.56
2002 Palacios C, Kysela DT, Sogin ML. Serial Analysis of rRNAs (SARS): A novel molecular strategy for sampling microbial diversity throughout the universe European Space Agency, (Special Publication) Esa Sp. 481-482.  0.56
2001 Podar M, Haddock SH, Sogin ML, Harbison GR. A molecular phylogenetic framework for the phylum Ctenophora using 18S rRNA genes. Molecular Phylogenetics and Evolution. 21: 218-30. PMID 11697917 DOI: 10.1006/Mpev.2001.1036  0.56
2001 Medina M, Collins AG, Silberman JD, Sogin ML. Evaluating hypotheses of basal animal phylogeny using complete sequences of large and small subunit rRNA. Proceedings of the National Academy of Sciences of the United States of America. 98: 9707-12. PMID 11504944 DOI: 10.1073/Pnas.171316998  0.56
2001 Gerbod D, Edgcomb VP, Noël C, Vanácová S, Wintjens R, Tachezy J, Sogin ML, Viscogliosi E. Phylogenetic relationships of class II fumarase genes from trichomonad species. Molecular Biology and Evolution. 18: 1574-84. PMID 11470849 DOI: 10.1093/Oxfordjournals.Molbev.A003944  0.56
2001 McArthur AG, Knodler LA, Silberman JD, Davids BJ, Gillin FD, Sogin ML. The evolutionary origins of eukaryotic protein disulfide isomerase domains: new evidence from the Amitochondriate protist Giardia lamblia. Molecular Biology and Evolution. 18: 1455-63. PMID 11470836 DOI: 10.1093/Oxfordjournals.Molbev.A003931  0.56
2001 Gerbod D, Edgcomb VP, Noël C, Zenner L, Wintjens R, Delgado-Viscogliosi P, Holder ME, Sogin ML, Viscogliosi E. Phylogenetic position of the trichomonad parasite of turkeys, Histomonas meleagridis (Smith) Tyzzer, inferred from small subunit rRNA sequence. The Journal of Eukaryotic Microbiology. 48: 498-504. PMID 11456328 DOI: 10.1111/J.1550-7408.2001.Tb00185.X  0.56
2001 Zettler LAA, Nerad TA, O'Kelly CJ, Sogin ML. The nucleariid amoebae: more protists at the animal-fungal boundary. The Journal of Eukaryotic Microbiology. 48: 293-7. PMID 11411837 DOI: 10.1111/J.1550-7408.2001.Tb00317.X  0.56
2001 Barbieri E, Paster BJ, Hughes D, Zurek L, Moser DP, Teske A, Sogin ML. Phylogenetic characterization of epibiotic bacteria in the accessory nidamental gland and egg capsules of the squid Loligo pealei (Cephalopoda:Loliginidae). Environmental Microbiology. 3: 151-67. PMID 11321532 DOI: 10.1046/J.1462-2920.2001.00172.X  0.56
2001 Morrison HG, Roger AJ, Nystul TG, Gillin FD, Sogin ML. Giardia lamblia expresses a proteobacterial-like DnaK homolog. Molecular Biology and Evolution. 18: 530-41. PMID 11264404 DOI: 10.1093/Oxfordjournals.Molbev.A003832  0.56
2001 Edgcomb VP, Roger AJ, Simpson AG, Kysela DT, Sogin ML. Evolutionary relationships among "jakobid" flagellates as indicated by alpha- and beta-tubulin phylogenies. Molecular Biology and Evolution. 18: 514-22. PMID 11264402 DOI: 10.1093/Oxfordjournals.Molbev.A003830  0.56
2001 Walker G, Simpson AGB, Edgcomb V, Sogin ML, Patterson DJ. Ultrastructural identities of Mastigamoeba punctachora, Mastigamoeba simplex and Mastigella commutans and assessment of hypotheses of relatedness of the pelobionts (Protista) European Journal of Protistology. 37: 25-49. DOI: 10.1078/0932-4739-00780  0.56
2000 Bouzat JL, McNeil LK, Robertson HM, Solter LF, Nixon JE, Beever JE, Gaskins HR, Olsen G, Subramaniam S, Sogin ML, Lewin HA. Phylogenomic analysis of the alpha proteasome gene family from early-diverging eukaryotes. Journal of Molecular Evolution. 51: 532-43. PMID 11116327 DOI: 10.1007/S002390010117  0.56
2000 Amaral Zettler LA, Nerad TA, O'Kelly CJ, Peglar MT, Gillevet PM, Silberman JD, Sogin ML. A molecular reassessment of the Leptomyxid amoebae Protist. 151: 275-282. PMID 11079772 DOI: 10.1078/1434-4610-00025  0.56
2000 McArthur AG, Morrison HG, Nixon JEJ, Passamaneck NQE, Kim U, Hinkle G, Crocker MK, Holder ME, Farr R, Reich CI, Olsen GE, Aley SB, Adam RD, Gillin FD, Sogin ML. The Giardia genome project database Fems Microbiology Letters. 189: 271-273. PMID 10930750 DOI: 10.1111/J.1574-6968.2000.Tb09242.X  0.56
2000 Wu G, McArthur AG, Fiser A, Šali A, Sogin ML, Müller M. Core histones of the amitochondriate protist, Giardia lamblia Molecular Biology and Evolution. 17: 1156-1163. PMID 10908635 DOI: 10.1093/Oxfordjournals.Molbev.A026398  0.56
2000 Delgado-Viscogliosi P, Viscogliosi E, Gerbod D, Kulda J, Sogin ML, Edgcomb VP. Molecular phylogeny of parabasalids based on small subunit rRNA sequences, with emphasis on the trichomonadinae subfamily Journal of Eukaryotic Microbiology. 47: 70-75. PMID 10651299 DOI: 10.1111/J.1550-7408.2000.Tb00013.X  0.56
2000 Orgel L, A'Hearn M, Bada J, Baross J, Chapman C, Drake M, Kerridge J, Race M, Sogin M, Squyres S. Sample return from small solar system bodies Advances in Space Research. 25: 239-248. DOI: 10.1016/S0273-1177(99)00954-0  0.56
1999 Silberman JD, Clark CG, Diamond LS, Sogin ML. Phylogeny of the genera Entamoeba and Endolimax as deduced from small- subunit ribosomal RNA sequences Molecular Biology and Evolution. 16: 1740-1751. PMID 10605115 DOI: 10.1093/Oxfordjournals.Molbev.A026086  0.56
1999 Sánchez LB, Morrison HG, Sogin ML, Müller M. Cloning and sequencing of an acetyl-CoA synthetase (ADP-forming) gene from the amitochondriate protist, Giardia lamblia Gene. 233: 225-231. PMID 10375639 DOI: 10.1016/S0378-1119(99)00134-1  0.56
1999 Roger AJ, Morrison HG, Sogin ML. Primary structure and phylogenetic relationships of a malate dehydrogenase gene from Giardia lamblia Journal of Molecular Evolution. 48: 750-755. PMID 10229579 DOI: 10.1007/Pl00006519  0.56
1999 Teske A, Sogin ML, Nielsen LP, Jannasch HW. Phylogenetic relationships of a large marine Beggiatoa Systematic and Applied Microbiology. 22: 39-44. PMID 10188277 DOI: 10.1016/S0723-2020(99)80026-5  0.56
1999 Zaman V, Zaki M, Howe J, Ng M, Leipe DD, Sogin ML, Silberman JD. Hyperamoeba isolated from human feces: Description and phylogenetic affinity European Journal of Protistology. 35: 197-207. DOI: 10.1016/S0932-4739(99)80038-8  0.56
1999 Sogin ML. Introductory remarks Biological Bulletin. 196: 307.  0.56
1999 Sogin ML, Guerrero, Kunkel, Chang. Concluding remarks Biological Bulletin. 196: 415-416.  0.56
1998 Morrison HG, Weil EJ, Karchner SI, Sogin ML, Stegeman JJ. Molecular cloning of CYP1A from the estuarine fish Fundulus heteroclitus and phylogenetic analysis of CYP1 genes: update with new sequences. Comparative Biochemistry and Physiology. Part C, Pharmacology, Toxicology & Endocrinology. 121: 231-40. PMID 9972465 DOI: 10.1016/S0742-8413(98)10044-0  0.56
1998 Henze K, Morrison HG, Sogin ML, Miklós Müller. Sequence and phylogenetic position of a class II aldolase gene in the amitochondriate protist, Giardia lamblia Gene. 222: 163-168. PMID 9831644 DOI: 10.1016/S0378-1119(98)00499-5  0.56
1998 Sogin ML, Silberman JD. Evolution of the protists and protistan parasites from the perspective of molecular systematics International Journal For Parasitology. 28: 11-20. PMID 9504331 DOI: 10.1016/S0020-7519(97)00181-1  0.56
1998 Roger AJ, Svärd SG, Tovar J, Clark CG, Smith MW, Gillin FD, Sogin ML. A mitochondrial-like chaperonin 60 gene in Giardia lamblia: Evidence that diplomonads once harbored an endosymbiont related to the progenitor of mitochondria Proceedings of the National Academy of Sciences of the United States of America. 95: 229-234. PMID 9419358 DOI: 10.1073/pnas.95.1.229  0.56
1998 Edgcomb V, Viscogliosi E, Simpson AGB, Delgado-Viscogliosi P, Roger AJ, Sogin ML. New insights into the phylogeny of trichomonads inferred from small subunit rRNA sequences Protist. 149: 359-366.  0.56
1997 Sogin ML. History assignment: When was the mitochondrion founded? Current Opinion in Genetics and Development. 7: 792-799. PMID 9468789 DOI: 10.1016/S0959-437X(97)80042-1  0.56
1997 Hinkle G, Morrison HG, Sogin ML. Genes coding for reverse transcriptase, DNA-directed RNA polymerase, and chitin synthase from the microsporidian Spraguea lophii Biological Bulletin. 193: 250-251. PMID 9390396 DOI: 10.1086/Bblv193N2P250  0.56
1997 Zhou Q, Hinkle G, Sogin ML, Dionne VE. Phylogenetic analysis of olfactory receptor genes from mudpuppy (Necturus maculosus). The Biological Bulletin. 193: 248-50. PMID 9390395  0.56
1997 Zettler LA, Sogin ML, Caron DA. Phylogenetic relationships between the Acantharea and the polycystinea: A molecular perspective on Haeckel's radiolaria Proceedings of the National Academy of Sciences of the United States of America. 94: 11411-11416. PMID 9326623 DOI: 10.1073/Pnas.94.21.11411  0.56
1997 Sogin ML. Organelle origins: Energy-producing symbionts in early eukaryotes? Current Biology. 7: R315-R317. PMID 9115381 DOI: 10.1016/S0960-9822(06)00147-3  0.56
1996 Sogin ML, Morrison HG, Hinkle G, Silberman JD. Ancestral relationships of the major eukaryotic lineages Microbiología (Madrid, Spain). 12: 17-28. PMID 9019131  0.56
1996 Silberman JD, Clark CG, Sogin ML. Dientamoeba fragilis shares a recent common evolutionary history with the trichomonads Molecular and Biochemical Parasitology. 76: 311-314. PMID 8920018 DOI: 10.1016/0166-6851(95)02516-2  0.56
1996 Santamaría-Fríes M, Fajardo L-G LF, Sogin ML, Olson PD, Relman DA. Lethal infection by a previously unrecognised metazoan parasite Lancet. 347: 1797-1801. PMID 8667924 DOI: 10.1016/S0140-6736(96)91618-9  0.56
1996 Hammerschmidt B, Schlegel M, Lynn DH, Leipe DD, Sogin ML, Raikov IB. Insights into the evolution of nuclear dualism in the ciliates revealed by phylogenetic analysis of rRNA sequences Journal of Eukaryotic Microbiology. 43: 225-230. PMID 8640192 DOI: 10.1111/J.1550-7408.1996.Tb01396.X  0.56
1996 Silberman JD, Sogin ML, Leipe DD, Clark CG. Human parasite finds taxonomic home [8] Nature. 380: 398. PMID 8602239 DOI: 10.1038/380398A0  0.56
1996 Leipe DD, Tong SM, Goggin CL, Slemenda SB, Pieniazek NJ, Sogin ML. 16S-like rDNA sequences from Developayella elegans, Labyrinthuloides haliotidis, and Proteromonas lacertae confirm that the stramenopiles are a primarily heterotrophic group European Journal of Protistology. 32: 449-458. DOI: 10.1016/S0932-4739(96)80004-6  0.56
1996 Schlegel M, Lom J, Stechmann A, Bernhard D, Leipe D, Dykova I, Sogin ML. Phylogenetic analysis of complete small subunit ribosomal RNA coding region of myxidium lieberkuehni: evidence that myxozoa are metazoa and related to the bilateria Archiv Fur Protistenkunde. 147: 1-9. DOI: 10.1016/S0003-9365(96)80002-9  0.56
1996 Bahr M, Hobbie JE, Sogin ML. Bacterial diversity in an arctic lake: A freshwater SAR11 cluster Aquatic Microbial Ecology. 11: 271-277.  0.56
1995 Bernhard D, Leipe DD, Sogin ML, Schlegel KM. Phylogenetic relationships of the Nassulida within the phylum Ciliophora inferred from the complete small subunit rRNA gene sequences of Furgasonia blochmanni, Obertrumia georgiana, and Pseudomicrothorax dubius Journal of Eukaryotic Microbiology. 42: 126-131. PMID 7757053 DOI: 10.1111/J.1550-7408.1995.Tb01552.X  0.56
1995 Morrison HG, Oleksiak MF, Cornell NW, Sogin ML, Stegeman JJ. Identification of cytochrome P-450 1A (CYP1A) genes from two teleost fish, toadfish (Opsanus tau) and scup (Stenotomus chrysops), and phylogenetic analysis of CYP1A genes Biochemical Journal. 308: 97-104. PMID 7755595 DOI: 10.1042/Bj3080097  0.56
1995 Gunderson J, Hinkle G, Leipe D, Morrison HG, Stickel SK, Odelson DA, Breznak JA, Nerad TA, Muller M, Sogin ML. Phylogeny of trichomonads inferred from small-subunit rRNA sequences Journal of Eukaryotic Microbiology. 42: 411-415. PMID 7620466 DOI: 10.1111/J.1550-7408.1995.Tb01604.X  0.56
1995 Kerk D, Gee A, Standish M, Wainwright PO, Drum AS, Elston RA, Sogin ML. The rosette agent of chinook salmon (Oncorhynchus tshawytscha) is closely related to choanoflagellates, as determined by the phylogenetic analyses of its small ribosomal subunit RNA Marine Biology. 122: 187-192. DOI: 10.1007/BF00348931  0.56
1994 Hinkle G, Leipe DD, Nerad TA, Sogin ML. The unusually long small subunit ribosomal RNA of Phreatamoeba balamuthi Nucleic Acids Research. 22: 465-469. PMID 8127686 DOI: 10.1093/Nar/22.3.465  0.56
1994 Hinkle G, Wetterer JK, Schultz TR, Sogin ML. Phylogeny of the attine ant fungi based on analysis of small subunit ribosomal RNA gene sequences. Science (New York, N.Y.). 266: 1695-7. PMID 7992052 DOI: 10.1126/Science.7992052  0.56
1994 Wainright PO, Patterson DJ, Sogin ML. Monophyletic origin of animals: a shared ancestry with the fungi Society of General Physiologists Series. 49: 39-53. PMID 7939903  0.56
1994 Bennett MV, Zheng X, Sogin ML. The connexins and their family tree. Society of General Physiologists Series. 49: 223-33. PMID 7939897  0.56
1994 Gunderson JH, Goss SJ, Sogin ML. The sequence of the Hartmannella vermiformis small subunit rRNA coding region. The Journal of Eukaryotic Microbiology. 41: 481-2. PMID 7804250 DOI: 10.1111/J.1550-7408.1994.Tb06046.X  0.56
1994 Leipe DD, Wainright PO, Gunderson JH, Porter D, Patterson DJ, Valois F, Himmerich S, Sogin ML. The stramenophiles from a molecular perspective: 16S-like rRNA sequences from Labyrinthuloides minuta and Cafeteria roenbergensis Phycologia. 33: 369-377. DOI: 10.2216/I0031-8884-33-5-369.1  0.56
1994 Leipe DD, Bernhard D, Schlegel M, Sogin ML. Evolution of 16S-like ribosomal RNA genes in the ciliophoran taxa Litostomatea and Phyllopharyngea European Journal of Protistology. 30: 354-361. DOI: 10.1016/S0932-4739(11)80083-0  0.56
1993 Leipe DD, Gunderson JH, Nerad TA, Sogin ML. Small subunit ribosomal RNA+ of Hexamita inflata and the quest for the first branch in the eukaryotic tree Molecular and Biochemical Parasitology. 59: 41-48. PMID 8515782 DOI: 10.1016/0166-6851(93)90005-I  0.56
1993 Sogin ML, Hinkle G, Leipe DD, Forterre P, Benachenhou-Lafha N, Labedan B. Universal tree of life [3] Nature. 362: 795. PMID 8479517 DOI: 10.1038/362795A0  0.56
1993 Wainright PO, Hinkle G, Sogin ML, Stickel SK. Monophyletic origins of the metazoa: An evolutionary link with fungi Science. 260: 340-342. PMID 8469985 DOI: 10.1126/Science.8469985  0.56
1993 Hinkle G, Sogin ML. The evolution of the Vahlkampfiidae as deduced from 16S-like ribosomal RNA analysis The Journal of Eukaryotic Microbiology. 40: 599-603. PMID 8401474 DOI: 10.1111/J.1550-7408.1993.Tb06114.X  0.56
1993 Gagnon S, Levesque RC, Sogin ML, Gajadhar AA. Molecular cloning, complete sequence of the small subunit ribosomal RNA coding region and phylogeny of Toxoplasma gondii Molecular and Biochemical Parasitology. 60: 145-148. PMID 8366888 DOI: 10.1016/0166-6851(93)90037-X  0.56
1993 Fong D, Rodriguez R, Koo K, Sun J, Sogin ML, Bushek D, Littlewood DT, Ford SE. Small subunit ribosomal RNA gene sequence of the oyster parasite Perkinsus marinus Molecular Marine Biology and Biotechnology. 2: 346-350. PMID 8193669  0.56
1993 Bhattacharya D, Stickel SK, Sogin ML. Isolation and molecular phylogenetic analysis of actin-coding regions from Emiliania huxleyi, a prymnesiophyte alga, by reverse transcriptase and PCR methods Molecular Biology and Evolution. 10: 689-703. PMID 7687735 DOI: 10.1093/Oxfordjournals.Molbev.A040021  0.56
1993 Sogin ML. Giants among the prokaryotes Nature. 362: 207. DOI: 10.1038/362207A0  0.56
1992 Bruns TD, Vilgalys R, Barns SM, Gonzalez D, Hibbett DS, Lane DJ, Simon L, Stickel S, Szaro TM, Weisburg WG. Evolutionary relationships within the fungi: analyses of nuclear small subunit rRNA sequences. Molecular Phylogenetics and Evolution. 1: 231-41. PMID 1342940 DOI: 10.1016/1055-7903(92)90020-H  0.56
1991 Barns SM, Lane DJ, Sogin ML, Bibeau C, Weisburg WG. Evolutionary relationships among pathogenic Candida species and relatives Journal of Bacteriology. 173: 2250-2255. PMID 2007550 DOI: 10.1128/Jb.173.7.2250-2255.1991  0.56
1991 Gajadhar AA, Marquardt WC, Hall R, Gunderson J, Ariztia-Carmona EV, Sogin ML. Ribosomal RNA sequences of Sarcocystis muris, Theileria annulata and Crypthecodinium cohnii reveal evolutionary relationships among apicomplexans, dinoflagellates, and ciliates Molecular and Biochemical Parasitology. 45: 147-154. PMID 1904987 DOI: 10.1016/0166-6851(91)90036-6  0.56
1991 Greenwood SJ, Schlegel M, Sogin ML, Lynn DH. Phylogenetic relationships of Blepharisma americanum and Colpoda inflata within the phylum ciliophora inferred from complete small subunit rRNA gene sequences. The Journal of Protozoology. 38: 1-6. PMID 1900085 DOI: 10.1111/J.1550-7408.1991.Tb04783.X  0.56
1991 Davila-Aponte JA, Huss VAR, Sogin ML, Cech TR. A self-splicing group I intron in the nuclear pre-rRNA of the green alga, Ankistrodesmus stipitatus Nucleic Acids Research. 19: 4429-4436. PMID 1886767 DOI: 10.1093/Nar/19.16.4429  0.56
1991 Greenwood SJ, Sogin ML, Lynn DH. Phylogenetic relationships within the class Oligohymenophorea, phylum Ciliophora, inferred from the complete small subunit rRNA gene sequences of Colpidium campylum, Glaucoma chattoni, and Opisthonecta henneguyi. Journal of Molecular Evolution. 33: 163-74. PMID 1840618 DOI: 10.1007/Bf02193631  0.56
1991 Schlegel M, Elwood HJ, Sogin ML. Molecular evolution in hypotrichous ciliates: Sequence of the small subunit ribosomal RNA genes from Onychodromus quadricornutus and Oxytricha granulifera (Oxytrichidae, Hypotrichida, Ciliophora) Journal of Molecular Evolution. 32: 64-69. PMID 1840617 DOI: 10.1007/Bf02099930  0.56
1991 Sogin ML. Early evolution and the origin of eukaryotes Current Opinion in Genetics and Development. 1: 457-463. PMID 1822277 DOI: 10.1016/0960-9822(92)90423-8  0.56
1991 Bhattacharya D, Stickel SK, Sogin ML. Molecular phylogenetic analysis of actin genic regions from Achlya bisexualis (Oomycota) and Costaria costata (Chromophyta) Journal of Molecular Evolution. 33: 525-536. PMID 1779434 DOI: 10.1007/Bf02102805  0.56
1991 Illingworth CA, Andrews JH, Bibeau C, Sogin ML. Phylogenetic placement ofAthelia bombacina, Aureobasidium pullulans, andColletotrichum gloeosporioides inferred from sequence comparisons of small-subunit ribosomal RNAs Experimental Mycology. 15: 65-75. DOI: 10.1016/0147-5975(91)90008-2  0.56
1990 Huss VAR, Sogin ML. Phylogenetic position of some Chlorella species within the chlorococcales based upon complete small-subunit ribosomal RNA sequences Journal of Molecular Evolution. 31: 432-442. PMID 2124631 DOI: 10.1007/Bf02106057  0.56
1989 Sogin ML, Gunderson JH, Elwood HJ, Alonso RA, Peatrie DA. Phylogenetic meaning of the kingdom concept: An unusual ribosomal RNA from Giardia lamblia Science. 243: 75-77. PMID 2911720 DOI: 10.1126/Science.2911720  0.56
1989 Edman JC, Kovacs JA, Masur H, Santi DV, Elwood HJ, Sogin ML. Ribosomal RNA genes of Pneumocystis carinii Journal of Protozoology. 36: 18S-20S. PMID 2540326 DOI: 10.1111/J.1550-7408.1989.Tb02672.X  0.56
1989 Cummings DJ, Domenico JM, Nelson J, Sogin ML. DNA sequence, structure, and phylogenetic relationship of the small subunit rRNA coding region of mitochondrial DNA from Podospora anserina Journal of Molecular Evolution. 28: 232-241. PMID 2494352 DOI: 10.1007/BF02102481  0.56
1989 Huss VAR, Sogin ML. Primary structure of the Chlorella vulgaris small subunit ribosomal RNA coding region Nucleic Acids Research. 17: 1255. DOI: 10.1093/Nar/17.3.1255  0.56
1989 Sogin ML, Edman JC. A self-splicing intron in the small subunit rRNA gene of Pneumocystis carinii Nucleic Acids Research. 17: 5349-5360. DOI: 10.1093/Nar/17.13.5349  0.56
1989 Sogin ML. Evolution of eukaryotic microorganisms and their small subunit ribosomal RNAs Integrative and Comparative Biology. 29: 487-499. DOI: 10.1093/Icb/29.2.487  0.56
1989 Sogin ML, Edman U, Elwood H. A single kingdom of eukaryotes The Hierarchy of Life. Molecules and Morphology in Phylogenetic Analysis: Proceedings From Nobel Symposium 70. Ics824. 133-143.  0.56
1988 Elwood HJ, Olsen GJ, Sogin ML. The small-subunit ribosomal RNA gene sequences from the hypotrichous ciliates Oxytricha nova and Stylonychia pustulata. Molecular Biology and Evolution. 2: 399-410. PMID 3939705 DOI: 10.1093/Oxfordjournals.Molbev.A040362  0.44
1988 Looker D, Miller LA, Elwood HJ, Stickel S, Sogin ML. Primary structure of the Leishmania donovani small subunit ribosomal RNA coding region Nucleic Acids Research. 16: 7198. PMID 3405771 DOI: 10.1093/Nar/16.14.7198  0.56
1988 Medlin L, Elwood HJ, Stickel S, Sogin ML. The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions Gene. 71: 491-499. PMID 3224833 DOI: 10.1016/0378-1119(88)90066-2  0.56
1988 Edman JC, Kovacs JA, Masur H, Santi DV, Elwood HJ, Sogin ML. Ribosomal RNA sequence shows Pneumocystis carinii to be a member of the Fungi Nature. 334: 519-522. PMID 2970013 DOI: 10.1038/334519A0  0.56
1988 McCutchan TF, de la Cruz VF, Lal AA, Gunderson JH, Elwood HJ, Sogin ML. Primary sequences of two small subunit ribosomal RNA genes from Plasmodium falciparum Molecular and Biochemical Parasitology. 28: 63-68. PMID 2836731 DOI: 10.1016/0166-6851(88)90181-8  0.56
1988 Lynn DH, Sogin ML. Assessment of phylogenetic relationships among ciliated protists using partial ribosomal RNA sequences derived from reverse transcripts Biosystems. 21: 249-254. PMID 2456107 DOI: 10.1016/0303-2647(88)90020-2  0.56
1987 Lau PP, DeBrunner-Vossbrinck B, Dunn B, Miotto K, MacDonnell MT, Rollins DM, Pillidge CJ, Hespell RB, Colwell RR, Sogin ML, Fox GE. Phylogenetic diversity and position of the genus Campylobacter. Systematic and Applied Microbiology. 9: 231-8. PMID 11542086 DOI: 10.1016/S0723-2020(87)80027-9  0.56
1987 Gunderson JH, Sogin ML, Wollett G, Hollingdale M, De La Cruz VF, Waters AP, McCutchan TF. Structurally distinct, stage-specific ribosomes occur in plasmodium Science. 238: 933-937. PMID 3672135 DOI: 10.1126/Science.3672135  0.56
1987 Gunderson JH, Elwood H, Ingold A, Kindle K, Sogin ML. Phylogenetic relationships between chlorophytes, chrysophytes, and oomycetes Proceedings of the National Academy of Sciences of the United States of America. 84: 5823-5827. PMID 3475703 DOI: 10.1073/Pnas.84.16.5823  0.56
1987 Sogin ML, Gunderson JH. Structural diversity of eukaryotic small subunit ribosomal RNAs. Evolutionary implications Annals of the New York Academy of Sciences. 503: 125-139. PMID 3304074 DOI: 10.1111/J.1749-6632.1987.Tb40603.X  0.56
1986 Sogin ML, Ingold A, Karlok M, Nielsen H, Engberg J. Phylogenetic evidence for the acquisition of ribosomal RNA introns subsequent to the divergence of some of the major Tetrahymena groups Embo Journal. 5: 3625-3630. PMID 3830129  0.56
1986 Dingermann T, Bertling W, Brechner T, Nerke K, Peffley DM, Sogin ML. Structure of two tRNA genes from Dictyostelium discoideum Nucleic Acids Research. 14: 1127. PMID 3633086 DOI: 10.1093/nar/14.2.1127  0.56
1986 Gunderson JH, McCutchan TF, Sogin ML. Sequence of the small subunit ribosomal RNA gene expressed in the bloodstream stages of Plasmodium berghei: Evolutionary implications Journal of Protozoology. 33: 525-529. PMID 3540280 DOI: 10.1111/J.1550-7408.1986.Tb05656.X  0.56
1986 Gunderson JH, Sogin ML. Length variation in eukaryotic rRNAs: small subunit rRNAs from the protists Acanthamoeba castellanii and Euglena gracilis Gene. 44: 63-70. PMID 3095190 DOI: 10.1016/0378-1119(86)90043-0  0.56
1986 Sogin ML, Elwood HJ. Primary structure of the Paramecium tetraurelia small-subunit rRNA coding region: Phylogenetic relationships within the caliophora Journal of Molecular Evolution. 23: 53-60. PMID 3084799 DOI: 10.1007/Bf02100998  0.56
1986 Sogin ML, Swanton MT, Gunderson JH, Elwood HJ. Sequence of the small subunit ribosomal RNA gene from the hypotrichous ciliate Euplotes aediculatus The Journal of Protozoology. 33: 26-29. PMID 3007752  0.56
1986 Sogin ML, Elwood HJ, Gunderson JH. Evolutionary diversity of eukaryotic small-subunit rRNA genes Proceedings of the National Academy of Sciences of the United States of America. 83: 1383-1387. PMID 2419907 DOI: 10.1073/Pnas.83.5.1383  0.56
1986 Sogin ML, Miotto K, Miller L. Primary structure of the Neurospora crassa small subunit ribosomal RNA coding region Nucleic Acids Research. 14: 9540. DOI: 10.1093/nar/14.23.9540  0.56
1985 Lane DJ, Pace B, Olsen GJ, Stahl DA, Sogin ML, Pace NR. Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses. Proceedings of the National Academy of Sciences of the United States of America. 82: 6955-9. PMID 2413450 DOI: 10.1073/Pnas.82.20.6955  0.48
1983 McCarroll R, Olsen GJ, Stahl YD, Woese CR, Sogin ML. Nucleotide sequence of the Dictyostelium discoideum small-subunit ribosomal ribonucleic acid inferred from the gene sequence: evolutionary implications Biochemistry. 22: 5858-5868. DOI: 10.1021/Bi00294A027  0.44
1982 Olsen GJ, Sogin ML. Nucleotide sequence of Dictyostelium discoideum 5.8S ribosomal ribonucleic acid: evolutionary and secondary structural implications. Biochemistry. 21: 2335-43. PMID 7093192 DOI: 10.1021/Bi00539A010  0.76
1980 Sogin ML, Olsen GJ. Identification and mapping of a 60 bp EcoRI fragment in the Dictyostelium discoideum ribosomal DNA. Gene. 8: 231-8. PMID 6244213 DOI: 10.1016/0378-1119(80)90001-3  0.48
1976 Woese C, Sogin M, Stahl D, Lewis BJ, Bonen L. A comparison of the 16S ribosomal RNAs from mesophilic and thermophilic bacilli: some modifications in the Sanger method for RNA sequencing. Journal of Molecular Evolution. 7: 197-213. PMID 819656 DOI: 10.1007/Bf01731489  0.56
1975 Woese CR, Sogin ML, Bonen L, Stahl D. Sequence studies on 16S ribosomal RNA from a blue-green alga. Journal of Molecular Evolution. 4: 307-15. PMID 813006 DOI: 10.1007/Bf01732533  0.68
1974 Woese CR, Sogin ML, Sutton LA. Procaryote phylogeny. I. Concerning the relatedness of Aerobacter aerogenes to Escherichia coli. Journal of Molecular Evolution. 3: 293-9. PMID 4606938 DOI: 10.1007/BF01796044  0.68
1974 Pribula CD, Fox GE, Woese CR. Nucleotide sequence of Bacillus megaterium 5 S RNA. Febs Letters. 44: 322-3. PMID 4213268 DOI: 10.1016/0014-5793(74)81168-3  0.56
1973 Schaup HW, Sogin ML, Kurland CG, Woese CR. Localization of a binding site for ribosomal protein S8 within the 16S ribosomal ribonucleic acid of Escherichia coli. Journal of Bacteriology. 115: 82-7. PMID 4577755 DOI: 10.1128/Jb.115.1.82-87.1973  0.56
1973 Sogin ML, Woese CR, Pace B, Pace NR. The relationship between precursor and mature forms of the 23S ribosomal RNA. Journal of Molecular Evolution. 2: 167-74. PMID 4219972 DOI: 10.1007/Bf01653996  0.68
1972 Sogin SJ, Sogin ML, Woese CR. Phylogenetic measurement in procaryotes by primary structural characterization. Journal of Molecular Evolution. 1: 173-84. PMID 24173440 DOI: 10.1007/BF01659163  0.68
1972 Schaup HW, Sogin M, Woese C, Kurland CG. Characterization of an RNA "binding site" for a specific ribosomal protein of Escherichia coli Mgg Molecular & General Genetics. 114: 1-8. PMID 4552495 DOI: 10.1007/Bf00268740  0.56
1972 Sogin ML, Pechman KJ, Zablen L, Lewis BJ, Woese CR. Observations on the post-transcriptionally modified nucleotides in the 16S ribosomal ribonucleic acid. Journal of Bacteriology. 112: 13-6. PMID 4342811  0.56
1971 Sogin SJ, Sogin ML, Woese CR. Phylogenetic measurement in procaryotes by primary structural characterization. Journal of Molecular Evolution. 1: 173-84. PMID 5006250  0.68
1971 Sogin M, Pace B, Pace NR, Woese CR. Primary structural relationship of p16 to m16 ribosomal RNA. Nature: New Biology. 232: 48-9. PMID 4935733 DOI: 10.1038/Newbio232048A0  0.36
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