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Mark A. Musen - Publications

Affiliations: 
Stanford University, Palo Alto, CA 
Area:
Health Sciences
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132 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Polleres A, Kamdar MR, Fernández JD, Tudorache T, Musen MA. A more decentralized vision for Linked Data Semantic Web. 11: 101-113. DOI: 10.3233/Sw-190380  0.342
2019 Kamdar MR, Fernández JD, Polleres A, Tudorache T, Musen MA. Enabling Web-scale data integration in biomedicine through Linked Open Data. Npj Digital Medicine. 2: 90. PMID 31531395 DOI: 10.1038/s41746-019-0162-5  0.335
2019 Martínez-Romero M, O'Connor MJ, Egyedi AL, Willrett D, Hardi J, Graybeal J, Musen MA. Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases. Database : the Journal of Biological Databases and Curation. 2019. PMID 31210270 DOI: 10.1093/Database/Baz059  0.413
2019 Gonçalves RS, Musen MA. The variable quality of metadata about biological samples used in biomedical experiments. Scientific Data. 6: 190021. PMID 30778255 DOI: 10.1038/Sdata.2019.21  0.301
2018 Bukhari SAC, O'Connor MJ, Martínez-Romero M, Egyedi AL, Willrett D, Graybeal J, Musen MA, Rubelt F, Cheung KH, Kleinstein SH. The CAIRR Pipeline for Submitting Standards-Compliant B and T Cell Receptor Repertoire Sequencing Studies to the National Center for Biotechnology Information Repositories. Frontiers in Immunology. 9: 1877. PMID 30166985 DOI: 10.3389/Fimmu.2018.01877  0.369
2018 Bukhari SAC, Martínez-Romero M, O' Connor MJ, Egyedi AL, Willrett D, Graybeal J, Musen MA, Cheung KH, Kleinstein SH. CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata. Bmc Bioinformatics. 19: 268. PMID 30012108 DOI: 10.1186/S12859-018-2247-6  0.382
2018 Kamdar MR, Walk S, Tudorache T, Musen MA. Analyzing user interactions with biomedical ontologies: A visual perspective. Web Semantics (Online). 49: 16-30. PMID 29657560 DOI: 10.1016/J.Websem.2017.12.002  0.368
2018 Jonquet C, Toulet A, Arnaud E, Aubin S, Dzalé Yeumo E, Emonet V, Graybeal J, Laporte M, Musen MA, Pesce V, Larmande P. AgroPortal: A vocabulary and ontology repository for agronomy Computers and Electronics in Agriculture. 144: 126-143. DOI: 10.1016/J.Compag.2017.10.012  0.396
2017 Hadley D, Pan J, El-Sayed O, Aljabban J, Aljabban I, Azad TD, Hadied MO, Raza S, Rayikanti BA, Chen B, Paik H, Aran D, Spatz J, Himmelstein D, Panahiazar M, ... ... Musen MA, et al. Precision annotation of digital samples in NCBI's gene expression omnibus. Scientific Data. 4: 170125. PMID 28925997 DOI: 10.1038/Sdata.2017.125  0.329
2017 Kamdar MR, Tudorache T, Musen MA. A Systematic Analysis of Term Reuse and Term Overlap across Biomedical Ontologies. Semantic Web. 8: 853-871. PMID 28819351 DOI: 10.3233/Sw-160238  0.356
2017 Gonçalves RS, Tu SW, Nyulas CI, Tierney MJ, Musen MA. An ontology-driven tool for structured data acquisition using Web forms. Journal of Biomedical Semantics. 8: 26. PMID 28764813 DOI: 10.1186/S13326-017-0133-1  0.382
2017 Martínez-Romero M, Jonquet C, O'Connor MJ, Graybeal J, Pazos A, Musen MA. NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation. Journal of Biomedical Semantics. 8: 21. PMID 28592275 DOI: 10.1186/S13326-017-0128-Y  0.401
2017 Ochs C, Perl Y, Geller J, Arabandi S, Tudorache T, Musen MA. An Empirical Analysis of Ontology Reuse in BioPortal. Journal of Biomedical Informatics. PMID 28583809 DOI: 10.1016/J.Jbi.2017.05.021  0.354
2016 Ochs C, Geller J, Perl Y, Musen MA. A Unified Software Framework for Deriving, Visualizing, and Exploring Abstraction Networks for Ontologies. Journal of Biomedical Informatics. PMID 27345947 DOI: 10.1016/J.Jbi.2016.06.008  0.348
2016 Ochs C, He Z, Zheng L, Geller J, Perl Y, Hripcsak G, Musen MA. Utilizing a structural meta-ontology for family-based quality assurance of the BioPortal ontologies. Journal of Biomedical Informatics. PMID 26988001 DOI: 10.1016/J.Jbi.2016.03.007  0.302
2016 Mortensen JM, Telis N, Hughey JJ, Fan-Minogue H, Van Auken K, Dumontier M, Musen MA. Is the crowd better as an assistant or a replacement in ontology engineering? An exploration through the lens of the Gene Ontology. Journal of Biomedical Informatics. PMID 26873781 DOI: 10.1016/J.Jbi.2016.02.005  0.36
2016 Buckeridge D, Lavigne M, Zinszer K, Okhmatovskaia A, Tu S, Nyalus C, Musen M, Lau W, Carroll L, Abernethy N. Developing the Scalable Data Integration for Disease Surveillance (SDIDS) Platform Online Journal of Public Health Informatics. 8. DOI: 10.5210/Ojphi.V8I1.6414  0.55
2015 Lamprecht D, Strohmaier M, Helic D, Nyulas C, Tudorache T, Noy NF, Musen MA. Using ontologies to model human navigation behavior in information networks: A study based on Wikipedia. Semantic Web. 6: 403-422. PMID 26568745 DOI: 10.3233/Sw-140143  0.369
2015 Musen MA, Bean CA, Cheung KH, Dumontier M, Durante KA, Gevaert O, Gonzalez-Beltran A, Khatri P, Kleinstein SH, O'Connor MJ, Pouliot Y, Rocca-Serra P, Sansone SA, Wiser JA. The center for expanded data annotation and retrieval. Journal of the American Medical Informatics Association : Jamia. PMID 26112029 DOI: 10.1093/Jamia/Ocv048  0.395
2015 Wang H, Tudorache T, Dou D, Noy NF, Musen MA. Analysis and Prediction of User Editing Patterns in Ontology Development Projects. Journal On Data Semantics. 4: 117-132. PMID 26052350 DOI: 10.1007/S13740-014-0047-3  0.339
2015 Friedman C, Rubin J, Brown J, Buntin M, Corn M, Etheredge L, Gunter C, Musen M, Platt R, Stead W, Sullivan K, Van Houweling D. Toward a science of learning systems: a research agenda for the high-functioning Learning Health System. Journal of the American Medical Informatics Association : Jamia. 22: 43-50. PMID 25342177 DOI: 10.1136/Amiajnl-2014-002977  0.3
2015 Guarino N, Musen M. Applied ontology: The next decade begins Applied Ontology. 10: 1-4. DOI: 10.3233/Ao-150143  0.345
2015 Walk S, Singer P, Strohmaier M, Helic D, Noy NF, Musen MA. How to apply Markov chains for modeling sequential edit patterns in collaborative ontology-engineering projects International Journal of Human Computer Studies. 84: 51-66. DOI: 10.1016/J.Ijhcs.2015.07.006  0.369
2014 Walk S, Singer P, Strohmaier M, Tudorache T, Musen MA, Noy NF. Discovering Beaten Paths in Collaborative Ontology-Engineering Projects using Markov Chains Journal of Biomedical Informatics. 51: 254-271. PMID 24953242 DOI: 10.1016/J.Jbi.2014.06.004  0.361
2014 Horridge M, Tudorache T, Nuylas C, Vendetti J, Noy NF, Musen MA. WebProtégé: A collaborative Web-based platform for editing biomedical ontologies Bioinformatics. 30: 2384-2385. PMID 24771560 DOI: 10.1093/Bioinformatics/Btu256  0.35
2014 Aquino Shluzas LM, Cronkite RC, Chambers D, Hoffman BB, Breeling J, Musen MA, Owens DK, Goldstein MK. Organizational factors affecting implementation of the ATHENA-Hypertension clinical decision support system during the VA’s nation-wide information technology restructuring: a case study Health Systems. 3: 214-234. DOI: 10.1057/Hs.2014.5  0.34
2013 Salvadores M, Alexander PR, Musen MA, Noy NF. BioPortal as a Dataset of Linked Biomedical Ontologies and Terminologies in RDF. Semantic Web. 4: 277-284. PMID 25214827 DOI: 10.3233/Sw-2012-0086  0.391
2013 Walk S, Pöschko J, Strohmaier M, Andrews K, Tudorache T, Noy NF, Nyulas C, Musen MA. PragmatiX: An Interactive Tool for Visualizing the Creation Process Behind Collaboratively Engineered Ontologies. International Journal On Semantic Web and Information Systems. 9: 45-78. PMID 24465189 DOI: 10.4018/Jswis.2013010103  0.373
2013 Strohmaier M, Walk S, Pöschko J, Lamprecht D, Tudorache T, Nyulas C, Musen MA, Noy NF. How Ontologies are Made: Studying the Hidden Social Dynamics Behind Collaborative Ontology Engineering Projects. Web Semantics (Online). 20. PMID 24311994 DOI: 10.1016/J.Websem.2013.04.001  0.353
2013 López-García P, Lependu P, Musen M, Illarramendi A. Cross-domain targeted ontology subsets for annotation: the case of SNOMED CORE and RxNorm. Journal of Biomedical Informatics. 47: 105-11. PMID 24095962 DOI: 10.1016/J.Jbi.2013.09.011  0.336
2013 Cases M, Furlong LI, Albanell J, Altman RB, Bellazzi R, Boyer S, Brand A, Brookes AJ, Brunak S, Clark TW, Gea J, Ghazal P, Graf N, Guigó R, Klein TE, ... ... Musen M, et al. Improving data and knowledge management to better integrate health care and research. Journal of Internal Medicine. 274: 321-8. PMID 23808970 DOI: 10.1111/Joim.12105  0.335
2013 Tudorache T, Nyulas C, Noy NF, Musen MA. WebProtégé: A Collaborative Ontology Editor and Knowledge Acquisition Tool for the Web. Semantic Web. 4: 89-99. PMID 23807872 DOI: 10.3233/Sw-2012-0057  0.421
2013 Gombocz EA, Splendiani A, Musen MA, Stanley RA, Eshleman JA. Yes, we can! Lessons from using Linked Open Data (LOD) and public ontologies to contextualize and enrich experimental data F1000research. 4. DOI: 10.7490/F1000Research.1093006.1  0.304
2013 Tudorache T, Nyulas C, Noy NF, Musen MA. WebProtégé: A collaborative ontology editor and knowledge acquisition tool for the web Semantic Web. 4: 89-99. DOI: 10.3233/SW-2012-0057  0.311
2013 Musen MA. The knowledge acquisition workshops: A remarkable convergence of ideas International Journal of Human-Computer Studies. 71: 195-199. DOI: 10.1016/J.Ijhcs.2012.10.011  0.41
2012 Shah NH, Cole T, Musen MA. Chapter 9: Analyses using disease ontologies. Plos Computational Biology. 8: e1002827. PMID 23300417 DOI: 10.1371/Journal.Pcbi.1002827  0.324
2012 Kulikowski CA, Shortliffe EH, Currie LM, Elkin PL, Hunter LE, Johnson TR, Kalet IJ, Lenert LA, Musen MA, Ozbolt JG, Smith JW, Tarczy-Hornoch PZ, Williamson JJ. AMIA Board white paper: definition of biomedical informatics and specification of core competencies for graduate education in the discipline. Journal of the American Medical Informatics Association : Jamia. 19: 931-8. PMID 22683918 DOI: 10.1136/Amiajnl-2012-001053  0.338
2012 Musen MA, Noy NF, Shah NH, Whetzel PL, Chute CG, Story MA, Smith B. The National Center for Biomedical Ontology. Journal of the American Medical Informatics Association : Jamia. 19: 190-5. PMID 22081220 DOI: 10.1136/Amiajnl-2011-000523  0.421
2011 Harland L, Larminie C, Sansone SA, Popa S, Marshall MS, Braxenthaler M, Cantor M, Filsell W, Forster MJ, Huang E, Matern A, Musen M, Saric J, Slater T, Wilson J, et al. Empowering industrial research with shared biomedical vocabularies. Drug Discovery Today. 16: 940-7. PMID 21963522 DOI: 10.1016/J.Drudis.2011.09.013  0.356
2011 Jonquet C, Lependu P, Falconer S, Coulet A, Noy NF, Musen MA, Shah NH. NCBO Resource Index: Ontology-Based Search and Mining of Biomedical Resources. Web Semantics (Online). 9: 316-324. PMID 21918645 DOI: 10.1016/J.Websem.2011.06.005  0.408
2011 Kalra D, Musen M, Smith B, Ceusters W, De Moor G. ARGOS policy brief on semantic interoperability. Studies in Health Technology and Informatics. 170: 1-15. PMID 21893897 DOI: 10.3233/978-1-60750-810-6-1  0.308
2011 Whetzel PL, Noy NF, Shah NH, Alexander PR, Nyulas C, Tudorache T, Musen MA. BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications. Nucleic Acids Research. 39: W541-5. PMID 21672956 DOI: 10.1093/Nar/Gkr469  0.362
2011 Ghazvinian A, Noy NF, Musen MA. How orthogonal are the OBO Foundry ontologies? Journal of Biomedical Semantics. 2: S2. PMID 21624157 DOI: 10.1186/2041-1480-2-S2-S2  0.447
2011 Coulet A, Garten Y, Dumontier M, Altman RB, Musen MA, Shah NH. Integration and publication of heterogeneous text-mined relationships on the Semantic Web. Journal of Biomedical Semantics. 2: S10. PMID 21624156 DOI: 10.1186/2041-1480-2-S2-S10  0.35
2011 LePendu P, Musen MA, Shah NH. Enabling enrichment analysis with the Human Disease Ontology. Journal of Biomedical Informatics. 44: S31-8. PMID 21550421 DOI: 10.1016/J.Jbi.2011.04.007  0.335
2011 Tenenbaum JD, Whetzel PL, Anderson K, Borromeo CD, Dinov ID, Gabriel D, Kirschner B, Mirel B, Morris T, Noy N, Nyulas C, Rubenson D, Saxman PR, Singh H, Whelan N, ... ... Musen MA, et al. The Biomedical Resource Ontology (BRO) to enable resource discovery in clinical and translational research. Journal of Biomedical Informatics. 44: 137-45. PMID 20955817 DOI: 10.1016/J.Jbi.2010.10.003  0.349
2010 Coulet A, Shah NH, Garten Y, Musen M, Altman RB. Using text to build semantic networks for pharmacogenomics. Journal of Biomedical Informatics. 43: 1009-19. PMID 20723615 DOI: 10.1016/J.Jbi.2010.08.005  0.372
2010 Jonquet C, Musen MA, Shah NH. Building a biomedical ontology recommender web service. Journal of Biomedical Semantics. 1: S1. PMID 20626921 DOI: 10.1186/2041-1480-1-S1-S1  0.399
2009 O'Connor MJ, Nyulas C, Tu S, Buckeridge DL, Okhmatovskaia A, Musen MA. Software-engineering challenges of building and deploying reusable problem solvers. Artificial Intelligence For Engineering Design, Analysis and Manufacturing : Ai Edam. 23: 339-356. PMID 23565031 DOI: 10.1017/S0890060409990047  0.62
2009 Jonquet C, Shah NH, Musen MA. The open biomedical annotator. Summit On Translational Bioinformatics. 2009: 56-60. PMID 21347171  0.317
2009 Izadi M, Buckeridge D, Okhmatovskaia A, Tu SW, O'Connor MJ, Nyulas C, Musen MA. A Bayesian network model for analysis of detection performance in surveillance systems. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2009: 276-80. PMID 20351864  0.463
2009 Shah NH, Bhatia N, Jonquet C, Rubin D, Chiang AP, Musen MA. Comparison of concept recognizers for building the Open Biomedical Annotator. Bmc Bioinformatics. 10: S14. PMID 19761568 DOI: 10.1186/1471-2105-10-S9-S14  0.379
2009 Noy NF, Shah NH, Whetzel PL, Dai B, Dorf M, Griffith N, Jonquet C, Rubin DL, Storey MA, Chute CG, Musen MA. BioPortal: ontologies and integrated data resources at the click of a mouse. Nucleic Acids Research. 37: W170-3. PMID 19483092 DOI: 10.1093/nar/gkp440  0.44
2009 Rubin DL, Talos IF, Halle M, Musen MA, Kikinis R. Computational neuroanatomy: ontology-based representation of neural components and connectivity. Bmc Bioinformatics. 10: S3. PMID 19208191 DOI: 10.1186/1471-2105-10-S2-S3  0.422
2009 Shah NH, Jonquet C, Chiang AP, Butte AJ, Chen R, Musen MA. Ontology-driven indexing of public datasets for translational bioinformatics. Bmc Bioinformatics. 10: S1. PMID 19208184 DOI: 10.1186/1471-2105-10-S2-S1  0.389
2009 Moreira DA, Mungall CJ, Shah NH, Aitken S, Richter J, Redmond T, Musen MA. The NCBO OBOF to OWL Mapping Nature Precedings. DOI: 10.1038/Npre.2009.3938.1  0.352
2009 Denney C, Batchelor C, Bodenreider O, Cheng S, Hart J, Hill J, Madden J, Musen M, Pichler E, Samwald M, Szalma S, Schriml L, Sedlock D, Soldatova L, Sonoda K, et al. Creating a Translational Medicine Ontology Nature Precedings. DOI: 10.1038/Npre.2009.3686.1  0.39
2008 Noy NF, de Coronado S, Solbrig H, Fragoso G, Hartel FW, Musen MA. Representing the NCI Thesaurus in OWL DL: Modeling tools help modeling languages. Applied Ontology. 3: 173-190. PMID 19789731 DOI: 10.3233/Ao-2008-0051  0.406
2008 Buckeridge DL, Okhmatovskaia A, Tu S, O'Connor M, Nyulas C, Musen MA. Predicting outbreak detection in public health surveillance: quantitative analysis to enable evidence-based method selection. Amia ... Annual Symposium Proceedings. Amia Symposium. 76-80. PMID 18999264  0.444
2008 Buckeridge DL, Okhmatovskaia A, Tu S, O'Connor M, Nyulas C, Musen MA. Understanding detection performance in public health surveillance: modeling aberrancy-detection algorithms. Journal of the American Medical Informatics Association : Jamia. 15: 760-9. PMID 18755992 DOI: 10.1197/Jamia.M2799  0.514
2008 Dinov ID, Rubin D, Lorensen W, Dugan J, Ma J, Murphy S, Kirschner B, Bug W, Sherman M, Floratos A, Kennedy D, Jagadish HV, Schmidt J, Athey B, Califano A, ... Musen M, et al. iTools: a framework for classification, categorization and integration of computational biology resources. Plos One. 3: e2265. PMID 18509477 DOI: 10.1371/Journal.Pone.0002265  0.372
2008 Mons B, Ashburner M, Chichester C, van Mulligen E, Weeber M, den Dunnen J, van Ommen GJ, Musen M, Cockerill M, Hermjakob H, Mons A, Packer A, Pacheco R, Lewis S, Berkeley A, et al. Calling on a million minds for community annotation in WikiProteins. Genome Biology. 9: R89. PMID 18507872 DOI: 10.1186/Gb-2008-9-5-R89  0.362
2008 Talos IF, Rubin DL, Halle M, Musen M, Kikinis R. A prototype symbolic model of canonical functional neuroanatomy of the motor system. Journal of Biomedical Informatics. 41: 251-63. PMID 18164666 DOI: 10.1016/J.Jbi.2007.11.003  0.4
2008 Balduccini M, Baral C, Brodaric B, Colton S, Fox P, Gutelius D, Hinkelman K, Horswill I, Huberman B, Hudlicka E, Lerman K, Lisetti C, McGuinness D, Maher ML, Musen MA, et al. Reports of the AAAI 2008 Spring Symposia Ai Magazine. 29: 107-115. DOI: 10.1609/Aimag.V29I3.2148  0.398
2007 Supekar K, Rubin D, Noy N, Musen M. Knowledge Zone: a public repository of peer-reviewed biomedical ontologies Medinfo. Medinfo. 12: 812-816. PMID 17911829  0.302
2007 Rubin DL, Noy NF, Musen MA. Protégé: A tool for managing and using terminology in radiology applications Journal of Digital Imaging. 20: 34-46. PMID 17687607 DOI: 10.1007/S10278-007-9065-0  0.39
2007 Shah NH, Rubin DL, Espinosa I, Montgomery K, Musen MA. Annotation and query of tissue microarray data using the NCI Thesaurus. Bmc Bioinformatics. 8: 296. PMID 17686183 DOI: 10.1186/1471-2105-8-296  0.328
2007 Tu SW, Campbell JR, Glasgow J, Nyman MA, McClure R, McClay J, Parker C, Hrabak KM, Berg D, Weida T, Mansfield JG, Musen MA, Abarbanel RM. The SAGE Guideline Model: achievements and overview. Journal of the American Medical Informatics Association : Jamia. 14: 589-98. PMID 17600098 DOI: 10.1197/Jamia.M2399  0.383
2007 Moreira DA, Musen MA. OBO to OWL: a protege OWL tab to read/save OBO ontologies. Bioinformatics (Oxford, England). 23: 1868-70. PMID 17496317 DOI: 10.1093/Bioinformatics/Btm258  0.398
2007 Dameron O, Musen MA, Gibaud B. Using semantic dependencies for consistency management of an ontology of brain-cortex anatomy. Artificial Intelligence in Medicine. 39: 217-25. PMID 17254759 DOI: 10.1016/J.Artmed.2006.09.004  0.325
2006 Buckeridge DL, Owens DK, Switzer P, Frank J, Musen MA. Evaluating detection of an inhalational anthrax outbreak. Emerging Infectious Diseases. 12: 1942-9. PMID 17326949 DOI: 10.3201/Eid1212.060331  0.484
2006 Rubin DL, Lewis SE, Mungall CJ, Misra S, Westerfield M, Ashburner M, Sim I, Chute CG, Solbrig H, Storey MA, Smith B, Day-Richter J, Noy NF, Musen MA. National Center for Biomedical Ontology: advancing biomedicine through structured organization of scientific knowledge. Omics : a Journal of Integrative Biology. 10: 185-98. PMID 16901225 DOI: 10.1089/Omi.2006.10.185  0.444
2005 Crubezy M, O'Connor M, Buckeridge D, Pincus Z, Musen M. Ontology-Centered Syndromic Surveillance for Bioterrorism Ieee Intelligent Systems. 20: 26-35. DOI: 10.1109/Mis.2005.91  0.554
2005 Hou CSJ, Musen MA, Noy NF. EZPAL: Environment for composing constraint axioms by instantiating templates International Journal of Human Computer Studies. 62: 578-596. DOI: 10.1016/J.Ijhcs.2004.07.002  0.371
2004 Tu SW, Campbell J, Musen MA. The SAGE guideline modeling: motivation and methodology. Studies in Health Technology and Informatics. 101: 167-71. PMID 15537222 DOI: 10.3233/978-1-60750-944-8-167  0.336
2004 Tu SW, Musen MA, Shankar R, Campbell J, Hrabak K, McClay J, Huff SM, McClure R, Parker C, Rocha R, Abarbanel R, Beard N, Glasgow J, Mansfield G, Ram P, et al. Modeling guidelines for integration into clinical workflow. Studies in Health Technology and Informatics. 107: 174-8. PMID 15360798 DOI: 10.3233/978-1-60750-949-3-174  0.361
2004 Goldstein MK, Coleman RW, Tu SW, Shankar RD, O'Connor MJ, Musen MA, Martins SB, Lavori PW, Shlipak MG, Oddone E, Advani AA, Gholami P, Hoffman BB. Translating research into practice: organizational issues in implementing automated decision support for hypertension in three medical centers. Journal of the American Medical Informatics Association : Jamia. 11: 368-76. PMID 15187064 DOI: 10.1197/Jamia.M1534  0.366
2004 Noy NF, Rubin DL, Musen MA. Making biomedical ontologies and ontology repositories work Ieee Intelligent Systems. 19: 78-81. DOI: 10.1109/Mis.2004.67  0.408
2004 Noy NF, Musen MA. Ontology versioning in an ontology management framework Ieee Intelligent Systems. 19: 6-13. DOI: 10.1109/Mis.2004.33  0.382
2003 O'Connor MJ, Buckeridge DL, Choy M, Crubezy M, Pincus Z, Musen MA. BioSTORM: a system for automated surveillance of diverse data sources. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 1071. PMID 14728574  0.519
2003 Pincus Z, Musen MA. Contextualizing heterogeneous data for integration and inference. Amia ... Annual Symposium Proceedings. Amia Symposium. 514-8. PMID 14728226  0.303
2003 Buckeridge DL, Musen MA, Switzer P, Crubézy M. An analytic framework fo space-time aberrancy detection in public health surveillance data. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 120-4. PMID 14728146  0.5
2003 Crubezy M, Musen MA, Motta E, Lu W. Configuring online problem-solving resources with the Internet Reasoning Service Ieee Intelligent Systems. 18: 34-42. DOI: 10.1109/Mis.2003.1193655  0.319
2003 Musen M, Neumann B, Studer R. IFIP conference on intelligent information processing Ieee Intelligent Systems. 18: 16-17. DOI: 10.1109/Mis.2003.1193652  0.35
2003 Gennari JH, Musen MA, Fergerson RW, Grosso WE, Crubezy M, Eriksson H, Noy NF, Tu SW. The evolution of Protégé: An environment for knowledge-based systems development International Journal of Human Computer Studies. 58: 89-123. DOI: 10.1016/S1071-5819(02)00127-1  0.446
2003 Noy NF, Musen MA. The PROMPT suite: Interactive tools for ontology merging and mapping International Journal of Human Computer Studies. 59: 983-1024. DOI: 10.1016/J.Ijhcs.2003.08.002  0.424
2003 Buckeridge DL, O’Connor M, Graham J, Choy MK, Pincus Z, Musen M. A knowledge-based method for surveillance Journal of Urban Health. 80: i129-i130. DOI: 10.1007/Bf02416920  0.552
2003 Graham JV, Buckeridge DL, Pincus Z, Choy MK, O’Connor MJ, Musen MA. A knowledge-based approach to defining syndromes Journal of Urban Health. 80: i129-i129. DOI: 10.1007/Bf02416919  0.601
2003 Pincus Z, Buckeridge DL, Choy MK, Graham JV, O’Connor MJ, Musen M. Tools to facilitate the interchange and analysis of nontraditional health surveillance data Journal of Urban Health. 80: i128-i129. DOI: 10.1007/Bf02416918  0.532
2003 Fensel D, Motta E, Harmelen Fv, Benjamins VR, Crubezy M, Decker S, Gaspari M, Groenboom R, Grosso W, Musen M, Plaza E, Schreiber G, Studer R, Wielinga B. The unified problem-solving method development language UPML Knowledge and Information Systems. 5: 83-131. DOI: 10.10007/S10115-002-0074-5  0.371
2002 Buckeridge DL, Graham J, O'Connor MJ, Choy MK, Tu SW, Musen MA. Knowledge-based bioterrorism surveillance. Proceedings / Amia ... Annual Symposium. Amia Symposium. 76-80. PMID 12463790  0.548
2002 Gil Y, Musen M, Shavlik J. Report on the first international conference on knowledge capture (K-CAP) Ai Magazine. 23: 107-108. DOI: 10.1609/Aimag.V23I4.1676  0.398
2002 Musen MA. Medical Informatics: Searching for Underlying Components Methods of Information in Medicine. 41: 12-19. DOI: 10.1055/S-0038-1634307  0.362
2001 Noy NF, Sintek M, Decker S, Crubézy M, Fergerson RW, Musen MA. Creating semantic web contents with protégé-2000 Ieee Intelligent Systems and Their Applications. 16: 60-71. DOI: 10.1109/5254.920601  0.413
2000 Stead WW, Miller RA, Musen MA, Hersh WR. Integration and beyond: linking information from disparate sources and into workflow. Journal of the American Medical Informatics Association : Jamia. 7: 135-45. PMID 10730596 DOI: 10.1136/Jamia.2000.0070135  0.33
1999 Shahar Y, Chen H, Stites DP, Basso LV, Kaizer H, Wilson DM, Musen MA. Semi-automated entry of clinical temporal-abstraction knowledge. Journal of the American Medical Informatics Association : Jamia. 6: 494-511. PMID 10579607 DOI: 10.1136/Jamia.1999.0060494  0.365
1999 Oliver DE, Shahar Y, Shortliffe EH, Musen MA. Representation of change in controlled medical terminologies Artificial Intelligence in Medicine. 15: 53-76. PMID 9930616 DOI: 10.1016/S0933-3657(98)00045-1  0.351
1999 Musen MA. Scalable Software Architectures for Decision Support Methods of Information in Medicine. 38: 229-238. DOI: 10.1055/S-0038-1634422  0.392
1999 Musen MA, Fagan LM, Combs DM, Shortliffe EH. Use of a domain model to drive an interactive knowledge-editing tool International Journal of Human Computer Studies. 51: 479-495. DOI: 10.1006/ijhc.1987.0320  0.333
1998 Musen MA. Domain Ontologies in Software Engineering: Use of Protégé with the EON Architecture Methods of Information in Medicine. 37: 540-550. DOI: 10.1055/S-0038-1634543  0.398
1998 Gennari JH, Cheng H, Altman RB, Musen MA. Reuse, CORBA, and knowledge-based systems International Journal of Human Computer Studies. 49: 523-546. DOI: 10.1006/Ijhc.1998.0217  0.397
1998 TU S, MUSEN M. Episodic refinement of episodic skeletal-plan refinement International Journal of Human-Computer Studies. 48: 475-497. DOI: 10.1006/Ijhc.1997.0194  0.387
1997 Musen MA, Tu SW, Das AK, Shahar Y. EON: a component-based approach to automation of protocol-directed therapy. Journal of the American Medical Informatics Association : Jamia. 3: 367-88. PMID 8930854 DOI: 10.1136/Jamia.1996.97084511  0.362
1997 Gaines BR, Musen MA, Uthurusamy R, Haller S, McRoy S, Oard D, Hull D, Hauptmann A, Witbrock M, Mahesh K, Farquhar A, Gruninger M, Doyle JR, Thomason RH. AAAI 1997 Spring Symposium Reports Ai Magazine. 18: 81. DOI: 10.1609/Aimag.V18I3.1308  0.363
1996 Shahar Y, Musen MA. Knowledge-based temporal abstraction in clinical domains. Artificial Intelligence in Medicine. 8: 267-98. PMID 8830925 DOI: 10.1016/0933-3657(95)00036-4  0.357
1996 Rothenfluh TE, Gennari JH, Eriksson H, Puerta AR, Tu SW, Musen MA. Reusable ontologies, knowledge-acquisition tools, and performance systems: PROTE´GE´-II solutions to Sisyphus-2 International Journal of Human-Computer Studies \/ International Journal of Man-Machine Studies. 44: 303-332. DOI: 10.1006/Ijhc.1996.0017  0.41
1995 Musen MA, Wieckert KE, Miller ET, Campbell KE, Fagan LM. Development of a controlled medical terminology, Knowledge acquisition and knowledge representation Methods of Information in Medicine. 34: 85-95. PMID 9082143 DOI: 10.1055/S-0038-1634576  0.346
1995 Campbell KE, Das AK, Musen MA. A logical foundation for representation of clinical data. Journal of the American Medical Informatics Association : Jamia. 1: 218-32. PMID 7719805 DOI: 10.1136/Jamia.1994.95236154  0.342
1995 Tu SW, Eriksson H, Gennari JH, Shahar Y, Musen MA. Ontology-based configuration of problem-solving methods and generation of knowledge-acquisition tools: application of PROTEGE-II to protocol-based decision support. Artificial Intelligence in Medicine. 7: 257-89. PMID 7581625 DOI: 10.1016/0933-3657(95)00006-R  0.416
1995 Musen MA, Schreiber AT. Architectures for intelligent systems based on reusable components. Artificial Intelligence in Medicine. 7: 189-99. PMID 7581622 DOI: 10.1016/0933-3657(95)00003-O  0.385
1995 Musen MA, van der Lei J. The Separation of Reviewing Knowledge from Medical Knowledge Methods of Information in Medicine. 34: 131-139. DOI: 10.1055/S-0038-1634593  0.363
1995 Eriksson H, Shahar Y, Tu SW, Puerta AR, Musen MA. Task modeling with reusable problem-solving methods Artificial Intelligence. 79: 293-326. DOI: 10.1016/0004-3702(94)00040-9  0.355
1994 Henry SB, Borchelt D, Schreiner JG, Musen MA. A computer-based approach to quality improvement for telephone triage in a community AIDS clinic Nursing Administration Quarterly. 18: 65-73. DOI: 10.1097/00006216-199401000-00016  0.338
1994 Das AK, Musen MA. A Temporal Query System for Protocol-Directed Decision Support Methods of Information in Medicine. 33: 358-370. DOI: 10.1055/S-0038-1635036  0.346
1994 Eriksson H, Puerta AR, Musen MA. Generation of knowledge-acquisition tools from domain ontologies International Journal of Human-Computer Studies. 41: 425-453. DOI: 10.1006/Ijhc.1994.1067  0.432
1994 Gennari JH, Tu SW, Rothenfluh TE, Musen MA. Mapping domains to methods in support of reuse International Journal of Human - Computer Studies. 41: 399-424. DOI: 10.1006/Ijhc.1994.1066  0.366
1993 Eriksson H, Musen M. Metatools for knowledge acquisition Ieee Software. 10: 23-29. DOI: 10.1109/52.210598  0.413
1993 Eriksson H, Musen MA. Conceptual models for automatic generation of knowledge-acquisition tools The Knowledge Engineering Review. 8: 27-47. DOI: 10.1017/S0269888900000059  0.404
1993 Musen MA. There's no theory better than that of a practical tool The Knowledge Engineering Review. 8: 1-4. DOI: 10.1017/S0269888900000035  0.423
1993 Puerta AR, Tu SW, Musen MA. Modeling tasks with mechanisms International Journal of Intelligent Systems. 8: 129-152. DOI: 10.1002/Int.4550080109  0.392
1992 Musen MA. Dimensions of knowledge sharing and reuse. Computers and Biomedical Research, An International Journal. 25: 435-67. PMID 1395522 DOI: 10.1016/0010-4809(92)90003-S  0.427
1992 Shahar Y, Tu SW, Musen MA. Knowledge acquisition for temporal-abstraction mechanisms Knowledge Acquisition. 4: 217-236. DOI: 10.1016/1042-8143(92)90027-X  0.383
1992 Tu SW, Shahar Y, Dawes J, Winkles J, Puerta AR, Musen MA. A problem-solving model for episodic skeletal-plan refinement Knowledge Acquisition. 4: 197-216. DOI: 10.1016/1042-8143(92)90026-W  0.356
1992 Puerta AR, Egar JW, Tu SW, Musen MA. A multiple-method knowledge-acquisition shell for the automatic generation of knowledge-acquisition tools Knowledge Acquisition. 4: 171-196. DOI: 10.1016/1042-8143(92)90025-V  0.42
1992 Linster M, Musen MA. Use of KADS to create a conceptual model of the ONCOCIN task Knowledge Acquisition. 4: 55-87. DOI: 10.1016/1042-8143(92)90014-R  0.369
1991 van der Lei J, Musen MA. A model for critiquing based on automated medical records. Computers and Biomedical Research, An International Journal. 24: 344-78. PMID 1889202 DOI: 10.1016/0010-4809(91)90034-T  0.339
1989 Tu SW, Kahn MG, Musen MA, Fagan LM, Ferguson JC. Episodic Skeletal-Plan Refinement Based on Temporal Data Communications of the Acm. 32: 1439-1455. DOI: 10.1145/76380.76384  0.356
1989 Musen MA. Knowledge acquisition at the metalevel: creation of custom-tailored knowledge-acquisition tools Intelligence\/Sigart Bulletin. 108: 45-55. DOI: 10.1145/63266.63272  0.434
1989 Musen MA, van der Lei J. Knowledge Engineering for Clinical Consultation Programs: Modeling the Application Area Methods of Information in Medicine. 28: 28-35. DOI: 10.1055/S-0038-1635543  0.373
1989 Musen MA. Conceptual models of interactive knowledge acquisition tools Knowledge Acquisition. 1: 73-88. DOI: 10.1016/S1042-8143(89)80006-8  0.436
1989 Musen MA. Automated support for building and extending expert models Machine Learning. 4: 347-375. DOI: 10.1007/Bf00130719  0.392
1987 Walton JD, Musen MA, Combs DM, Lane CD, Shortliffe EH, Fagan LM. Graphical access to medical expert systems: III. Design of a knowledge acquisition environment. Methods of Information in Medicine. 26: 78-88. PMID 3670103 DOI: 10.1055/S-0038-1635497  0.332
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