Barbara L. Golden - Publications

Purdue University, West Lafayette, IN, United States 
RNA structure and function

40 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Miao Z, Adamiak RW, Antczak M, Boniecki MJ, Bujnicki JM, Chen SJ, Cheng CY, Cheng Y, Chou FC, Das R, Dokholyan NV, Ding F, Geniesse C, Jiang Y, Joshi A, ... ... Golden BL, et al. RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers. Rna (New York, N.Y.). PMID 32371455 DOI: 10.1261/rna.075341.120  0.44
2015 Mir A, Golden BL. Two active site divalent ions in the crystal structure of the hammerhead ribozyme bound to a transition state analog. Biochemistry. PMID 26551631 DOI: 10.1021/acs.biochem.5b01139  1
2015 Mir A, Chen J, Robinson K, Lendy E, Goodman J, Neau DB, Golden BL. Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction. Biochemistry. PMID 26398724 DOI: 10.1021/acs.biochem.5b00824  1
2013 Thaplyal P, Ganguly A, Golden BL, Hammes-Schiffer S, Bevilacqua PC. Thio effects and an unconventional metal ion rescue in the genomic hepatitis delta virus ribozyme. Biochemistry. 52: 6499-514. PMID 24001219 DOI: 10.1021/bi4000673  1
2013 Chen J, Ganguly A, Miswan Z, Hammes-Schiffer S, Bevilacqua PC, Golden BL. Identification of the catalytic Mg²⁺ ion in the hepatitis delta virus ribozyme. Biochemistry. 52: 557-67. PMID 23311293 DOI: 10.1021/bi3013092  1
2013 Ho KK, Zhang H, Golden BL, Ogas J. PICKLE is a CHD subfamily II ATP-dependent chromatin remodeling factor. Biochimica Et Biophysica Acta. 1829: 199-210. PMID 23128324 DOI: 10.1016/j.bbagrm.2012.10.011  1
2011 Golden BL. Two distinct catalytic strategies in the hepatitis δ virus ribozyme cleavage reaction. Biochemistry. 50: 9424-33. PMID 22003985 DOI: 10.1021/bi201157t  1
2011 Mitra S, Laederach A, Golden BL, Altman RB, Brenowitz M. RNA molecules with conserved catalytic cores but variable peripheries fold along unique energetically optimized pathways. Rna (New York, N.Y.). 17: 1589-603. PMID 21712400 DOI: 10.1261/rna.2694811  1
2011 Veeraraghavan N, Ganguly A, Golden BL, Bevilacqua PC, Hammes-Schiffer S. Mechanistic strategies in the HDV ribozyme: chelated and diffuse metal ion interactions and active site protonation. The Journal of Physical Chemistry. B. 115: 8346-57. PMID 21644800 DOI: 10.1021/jp203202e  1
2011 Veeraraghavan N, Ganguly A, Chen JH, Bevilacqua PC, Hammes-Schiffer S, Golden BL. Metal binding motif in the active site of the HDV ribozyme binds divalent and monovalent ions. Biochemistry. 50: 2672-82. PMID 21348498 DOI: 10.1021/bi2000164  1
2011 Joshi R, Ho KK, Tenney K, Chen JH, Golden BL, Gimble FS. Evolution of I-SceI homing endonucleases with increased DNA recognition site specificity. Journal of Molecular Biology. 405: 185-200. PMID 21029741 DOI: 10.1016/j.jmb.2010.10.029  1
2010 Chen JH, Yajima R, Chadalavada DM, Chase E, Bevilacqua PC, Golden BL. A 1.9 A crystal structure of the HDV ribozyme precleavage suggests both Lewis acid and general acid mechanisms contribute to phosphodiester cleavage. Biochemistry. 49: 6508-18. PMID 20677830 DOI: 10.1021/bi100670p  1
2010 Kieft JS, Chase E, Costantino DA, Golden BL. Identification and characterization of anion binding sites in RNA. Rna (New York, N.Y.). 16: 1118-23. PMID 20410239 DOI: 10.1261/rna.2072710  1
2009 Gong B, Chen JH, Bevilacqua PC, Golden BL, Carey PR. Competition between Co(NH(3)(6)3+ and inner sphere Mg2+ ions in the HDV ribozyme. Biochemistry. 48: 11961-70. PMID 19888753 DOI: 10.1021/bi901091v  1
2009 Gong B, Chen JH, Yajima R, Chen Y, Chase E, Chadalavada DM, Golden BL, Carey PR, Bevilacqua PC. Raman crystallography of RNA. Methods (San Diego, Calif.). 49: 101-11. PMID 19409996 DOI: 10.1016/j.ymeth.2009.04.016  1
2009 Chen JH, Gong B, Bevilacqua PC, Carey PR, Golden BL. A catalytic metal ion interacts with the cleavage Site G.U wobble in the HDV ribozyme. Biochemistry. 48: 1498-507. PMID 19178151 DOI: 10.1021/bi8020108  1
2008 Cerrone-Szakal AL, Chadalavada DM, Golden BL, Bevilacqua PC. Mechanistic characterization of the HDV genomic ribozyme: the cleavage site base pair plays a structural role in facilitating catalysis. Rna (New York, N.Y.). 14: 1746-60. PMID 18658121 DOI: 10.1261/rna.1140308  1
2008 Gong B, Chen Y, Christian EL, Chen JH, Chase E, Chadalavada DM, Yajima R, Golden BL, Bevilacqua PC, Carey PR. Detection of innersphere interactions between magnesium hydrate and the phosphate backbone of the HDV ribozyme using Raman crystallography. Journal of the American Chemical Society. 130: 9670-2. PMID 18593125 DOI: 10.1021/ja801861s  1
2008 Warrier R, Linger BR, Golden BL, Kuhn RJ. Role of sindbis virus capsid protein region II in nucleocapsid core assembly and encapsidation of genomic RNA. Journal of Virology. 82: 4461-70. PMID 18305029 DOI: 10.1128/JVI.01936-07  1
2008 Paukstelis PJ, Chen JH, Chase E, Lambowitz AM, Golden BL. Structure of a tyrosyl-tRNA synthetase splicing factor bound to a group I intron RNA. Nature. 451: 94-7. PMID 18172503 DOI: 10.1038/nature06413  1
2007 Gong B, Chen JH, Chase E, Chadalavada DM, Yajima R, Golden BL, Bevilacqua PC, Carey PR. Direct measurement of a pK(a) near neutrality for the catalytic cytosine in the genomic HDV ribozyme using Raman crystallography. Journal of the American Chemical Society. 129: 13335-42. PMID 17924627 DOI: 10.1021/ja0743893  1
2007 Golden BL. Preparation and crystallization of RNA. Methods in Molecular Biology (Clifton, N.J.). 363: 239-57. PMID 17272845 DOI: 10.1007/978-1-59745-209-0_12  1
2005 Chase E, Golden BL. Crystallization and preliminary diffraction analysis of a group I ribozyme from bacteriophage Twort. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 61: 71-4. PMID 16508095 DOI: 10.1107/S1744309104028337  1
2005 Golden BL, Kim H, Chase E. Crystal structure of a phage Twort group I ribozyme-product complex. Nature Structural & Molecular Biology. 12: 82-9. PMID 15580277 DOI: 10.1038/nsmb868  1
2004 Linger BR, Kunovska L, Kuhn RJ, Golden BL. Sindbis virus nucleocapsid assembly: RNA folding promotes capsid protein dimerization. Rna (New York, N.Y.). 10: 128-38. PMID 14681591 DOI: 10.1261/rna.5127104  1
2003 Fang XW, Srividya N, Golden BL, Sosnick TR, Pan T. Stepwise conversion of a mesophilic to a thermophilic ribozyme. Journal of Molecular Biology. 330: 177-83. PMID 12823959 DOI: 10.1016/S0022-2836(03)00582-5  1
2003 Golden BL, Kundrot CE. RNA crystallization. Journal of Structural Biology. 142: 98-107. PMID 12718923 DOI: 10.1016/S1047-8477(03)00042-X  1
2001 Fang XW, Golden BL, Littrell K, Shelton V, Thiyagarajan P, Pan T, Sosnick TR. The thermodynamic origin of the stability of a thermophilic ribozyme. Proceedings of the National Academy of Sciences of the United States of America. 98: 4355-60. PMID 11296284 DOI: 10.1073/pnas.071050698  1
2000 Golden BL. Heavy atom derivatives of RNA. Methods in Enzymology. 317: 124-32. PMID 10829276 DOI: 10.1016/S0076-6879(00)17010-7  1
1998 Golden BL, Gooding AR, Podell ER, Cech TR. A preorganized active site in the crystal structure of the Tetrahymena ribozyme. Science (New York, N.Y.). 282: 259-64. PMID 9841391 DOI: 10.1126/science.282.5387.259  1
1998 Davies C, Bussiere DE, Golden BL, Porter SJ, Ramakrishnan V, White SW. Ribosomal proteins S5 and L6: high-resolution crystal structures and roles in protein synthesis and antibiotic resistance. Journal of Molecular Biology. 279: 873-88. PMID 9642068 DOI: 10.1006/jmbi.1998.1780  1
1997 Golden BL, Podell ER, Gooding AR, Cech TR. Crystals by design: a strategy for crystallization of a ribozyme derived from the Tetrahymena group I intron. Journal of Molecular Biology. 270: 711-23. PMID 9245599 DOI: 10.1006/jmbi.1997.1155  1
1996 Golden BL, Gooding AR, Podell ER, Cech TR. X-ray crystallography of large RNAs: heavy-atom derivatives by RNA engineering. Rna (New York, N.Y.). 2: 1295-305. PMID 8972777  1
1996 Cate JH, Gooding AR, Podell E, Zhou K, Golden BL, Szewczak AA, Kundrot CE, Cech TR, Doudna JA. RNA tertiary structure mediation by adenosine platforms. Science (New York, N.Y.). 273: 1696-9. PMID 8781229  1
1996 Cate JH, Gooding AR, Podell E, Zhou K, Golden BL, Kundrot CE, Cech TR, Doudna JA. Crystal structure of a group I ribozyme domain: principles of RNA packing. Science (New York, N.Y.). 273: 1678-85. PMID 8781224  1
1996 Golden BL, Cech TR. Conformational switches involved in orchestrating the successive steps of group I RNA splicing. Biochemistry. 35: 3754-63. PMID 8619996 DOI: 10.1021/bi952599z  1
1995 Ramakrishnan V, Davies C, Gerchman SE, Golden BL, Hoffmann DW, Jaishree TN, Kyila JH, Porter S, White SW. Structures of prokaryotic ribosomal proteins: implications for RNA binding and evolution. Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. 73: 979-86. PMID 8722013  1
1993 Golden BL, Ramakrishnan V, White SW. Ribosomal protein L6: structural evidence of gene duplication from a primitive RNA binding protein. The Embo Journal. 12: 4901-8. PMID 8262035  1
1993 Golden BL, Hoffman DW, Ramakrishnan V, White SW. Ribosomal protein S17: characterization of the three-dimensional structure by 1H and 15N NMR. Biochemistry. 32: 12812-20. PMID 8251502 DOI: 10.1021/bi00210a033  1
1991 Hoffman DW, Query CC, Golden BL, White SW, Keene JD. RNA-binding domain of the A protein component of the U1 small nuclear ribonucleoprotein analyzed by NMR spectroscopy is structurally similar to ribosomal proteins. Proceedings of the National Academy of Sciences of the United States of America. 88: 2495-9. PMID 1826055  1
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