| Year |
Citation |
Score |
| 2022 |
Marshall VA, Fisher NC, Goodman CA, Cornejo Castro EM, Liu I, Khanal S, Holdridge BM, Thorpe AL, Labo N, Stolka KB, Hemingway-Foday JJ, Abassora M, N'Dom P, Smith JS, Sallah N, ... ... Kellam P, et al. Systematic Analysis of Kaposi's Sarcoma-associated Herpesvirus Genomes from a Kaposi's Sarcoma (KS) Case-Control Study in Cameroon: Evidence of Dual Infections but No Association Between Viral Sequence Variation and KS Risk. International Journal of Cancer. PMID 35608873 DOI: 10.1002/ijc.34136 |
0.312 |
|
| 2022 |
Zhao L, Wymant C, Blanquart F, Golubchik T, Gall A, Bakker M, Bezemer D, Hall M, Ong SH, Albert J, Bannert N, Fellay J, Grabowski MK, Gunsenheimer-Bartmeyer B, Günthard HF, ... ... Kellam P, et al. Phylogenetic estimation of the viral fitness landscape of HIV-1 set-point viral load. Virus Evolution. 8: veac022. PMID 35402002 DOI: 10.1093/ve/veac022 |
0.316 |
|
| 2022 |
Phan MVT, Agoti CN, Munywoki PK, Otieno GP, Ngama M, Kellam P, Cotten M, Nokes DJ. Identification of missed viruses by metagenomic sequencing of clinical respiratory samples from Kenya. Scientific Reports. 12: 202. PMID 34997042 DOI: 10.1038/s41598-021-03987-1 |
0.321 |
|
| 2020 |
Sallah N, Miley W, Labo N, Carstensen T, Fatumo S, Gurdasani D, Pollard MO, Dilthey AT, Mentzer AJ, Marshall V, Cornejo Castro EM, Pomilla C, Young EH, Asiki G, Hibberd ML, ... ... Kellam P, et al. Distinct genetic architectures and environmental factors associate with host response to the γ2-herpesvirus infections. Nature Communications. 11: 3849. PMID 32737300 DOI: 10.1038/S41467-020-17696-2 |
0.408 |
|
| 2020 |
Busse DC, Habgood-Coote D, Clare S, Brandt C, Bassano I, Kaforou M, Herberg J, Levin M, Eleouet JF, Kellam P, Tregoning JS. Interferon-induced Protein-44 and Interferon-induced Protein 44-like restrict replication of Respiratory Syncytial Virus. Journal of Virology. PMID 32611756 DOI: 10.1128/Jvi.00297-20 |
0.398 |
|
| 2020 |
Kellam P, Barclay W. The dynamics of humoral immune responses following SARS-CoV-2 infection and the potential for reinfection. The Journal of General Virology. PMID 32430094 DOI: 10.1099/Jgv.0.001439 |
0.329 |
|
| 2019 |
Petrova VN, Sawatsky B, Han AX, Laksono BM, Walz L, Parker E, Pieper K, Anderson CA, de Vries RD, Lanzavecchia A, Kellam P, von Messling V, de Swart RL, Russell CA. Incomplete genetic reconstitution of B cell pools contributes to prolonged immunosuppression after measles. Science Immunology. 4. PMID 31672862 DOI: 10.1126/Sciimmunol.Aay6125 |
0.374 |
|
| 2019 |
Bashford-Rogers RJM, Bergamaschi L, McKinney EF, Pombal DC, Mescia F, Lee JC, Thomas DC, Flint SM, Kellam P, Jayne DRW, Lyons PA, Smith KGC. Analysis of the B cell receptor repertoire in six immune-mediated diseases. Nature. PMID 31554970 DOI: 10.1038/S41586-019-1595-3 |
0.301 |
|
| 2019 |
Blackburn RM, Frampton D, Smith CM, Fragaszy EB, Watson SJ, Ferns RB, Binter Š, Coen PG, Grant P, Shallcross LJ, Kozlakidis Z, Pillay D, Kellam P, Hué S, Nastouli E, et al. Nosocomial transmission of influenza: A retrospective cross-sectional study using next generation sequencing at a hospital in England (2012-2014). Influenza and Other Respiratory Viruses. PMID 31536169 DOI: 10.1111/Irv.12679 |
0.33 |
|
| 2019 |
Agoti CN, Phan MVT, Munywoki PK, Githinji G, Medley GF, Cane PA, Kellam P, Cotten M, Nokes DJ. Genomic analysis of respiratory syncytial virus infections in households and utility in inferring who infects the infant. Scientific Reports. 9: 10076. PMID 31296922 DOI: 10.1038/S41598-019-46509-W |
0.391 |
|
| 2019 |
Bridges R, Correia S, Wegner F, Venturini C, Palser A, White RE, Kellam P, Breuer J, Farrell PJ. Essential role of inverted repeat in Epstein-Barr virus IR-1 in B cell transformation; geographical variation of the viral genome. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 374: 20180299. PMID 30955492 DOI: 10.1098/Rstb.2018.0299 |
0.455 |
|
| 2019 |
Bassano I, Ong SH, Sanz-Hernandez M, Vinkler M, Kebede A, Hanotte O, Onuigbo E, Fife M, Kellam P. Comparative analysis of the chicken IFITM locus by targeted genome sequencing reveals evolution of the locus and positive selection in IFITM1 and IFITM3. Bmc Genomics. 20: 272. PMID 30952207 DOI: 10.1186/S12864-019-5621-5 |
0.355 |
|
| 2019 |
Ratmann O, Grabowski MK, Hall M, Golubchik T, Wymant C, Abeler-Dörner L, Bonsall D, Hoppe A, Brown AL, de Oliveira T, Gall A, Kellam P, Pillay D, Kagaayi J, Kigozi G, et al. Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis. Nature Communications. 10: 1411. PMID 30926780 DOI: 10.1038/S41467-019-09139-4 |
0.377 |
|
| 2018 |
Phan MVT, Ngo Tri T, Hong Anh P, Baker S, Kellam P, Cotten M. Identification and characterization of Coronaviridae genomes from Vietnamese bats and rats based on conserved protein domains. Virus Evolution. 4: vey035. PMID 30568804 DOI: 10.1093/Ve/Vey035 |
0.404 |
|
| 2018 |
Smith SE, Busse DC, Binter Š, Weston S, Diaz Soria C, Laksono BM, Clare S, Van Nieuwkoop S, Van den Hoogen BG, Clement M, Marsden M, Humphreys IR, Marsh M, de Swart RL, Wash RS, ... ... Kellam P, et al. Interferon-induced Transmembrane Protein 1 restricts replication of virus that enter cells via the plasma membrane. Journal of Virology. PMID 30567988 DOI: 10.1128/Jvi.02003-18 |
0.404 |
|
| 2018 |
Canuti M, Williams CV, Sagan SM, Oude Munnink BB, Gadi S, Verhoeven JTP, Kellam P, Cotten M, Lang AS, Junge RE, Cullen JM, van der Hoek L. Virus discovery reveals frequent infection by diverse novel members of the Flaviviridae in wild lemurs. Archives of Virology. PMID 30460488 DOI: 10.1007/S00705-018-4099-9 |
0.437 |
|
| 2018 |
Goldhill DH, Langat P, Xie H, Galiano M, Miah S, Kellam P, Zambon M, Lackenby A, Barclay W. Determining the Mutation Bias of Favipiravir in Influenza Using Next-generation Sequencing. Journal of Virology. PMID 30381482 DOI: 10.1128/Jvi.01217-18 |
0.376 |
|
| 2018 |
Otieno JR, Kamau EM, Oketch JW, Ngoi JM, Gichuki AM, Binter Š, Otieno GP, Ngama M, Agoti CN, Cane PA, Kellam P, Cotten M, Lemey P, Nokes DJ. Whole genome analysis of local Kenyan and global sequences unravels the epidemiological and molecular evolutionary dynamics of RSV genotype ON1 strains. Virus Evolution. 4: vey027. PMID 30271623 DOI: 10.1093/Ve/Vey027 |
0.418 |
|
| 2018 |
Petrova VN, Muir L, McKay PF, Vassiliou GS, Smith KGC, Lyons PA, Russell CA, Anderson CA, Kellam P, Bashford-Rogers RJM. Combined Influence of B-Cell Receptor Rearrangement and Somatic Hypermutation on B-Cell Class-Switch Fate in Health and in Chronic Lymphocytic Leukemia. Frontiers in Immunology. 9: 1784. PMID 30147686 DOI: 10.3389/Fimmu.2018.01784 |
0.31 |
|
| 2018 |
Correia S, Bridges R, Wegner F, Venturini C, Palser A, Middeldorp JM, Cohen JI, Lorenzetti MA, Bassano I, White RE, Kellam P, Breuer J, Farrell PJ. Sequence variation of Epstein-Barr virus: viral types, geography, codon usage and diseases. Journal of Virology. PMID 30111570 DOI: 10.1128/Jvi.01132-18 |
0.451 |
|
| 2018 |
Sallah N, Palser AL, Watson SJ, Labo N, Asiki G, Marshall V, Newton R, Whitby D, Kellam P, Barroso I. Genome-wide sequence analysis of Kaposi's Sarcoma-associated Herpesvirus shows diversification driven by recombination. The Journal of Infectious Diseases. PMID 30010810 DOI: 10.1093/Infdis/Jiy427 |
0.417 |
|
| 2018 |
Wymant C, Blanquart F, Golubchik T, Gall A, Bakker M, Bezemer D, Croucher NJ, Hall M, Hillebregt M, Ong SH, Ratmann O, Albert J, Bannert N, Fellay J, Fransen K, ... ... Kellam P, et al. Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver. Virus Evolution. 4: vey007. PMID 29876136 DOI: 10.1093/Ve/Vey007 |
0.402 |
|
| 2018 |
Kiyuka PK, Agoti CN, Munywoki PK, Njeru R, Bett A, Otieno JR, Otieno GP, Kamau E, Clark TG, van der Hoek L, Kellam P, Nokes DJ, Cotten M. Human Coronavirus NL63 Molecular Epidemiology and Evolutionary Patterns in Rural Coastal Kenya. The Journal of Infectious Diseases. 217: 1728-1739. PMID 29741740 DOI: 10.1093/Infdis/Jiy098 |
0.321 |
|
| 2018 |
Groves HT, McDonald JU, Langat P, Kinnear E, Kellam P, McCauley J, Ellis J, Thompson C, Elderfield R, Parker L, Barclay W, Tregoning JS. Mouse Models of Influenza Infection with Circulating Strains to Test Seasonal Vaccine Efficacy. Frontiers in Immunology. 9: 126. PMID 29445377 DOI: 10.3389/Fimmu.2018.00126 |
0.362 |
|
| 2018 |
Yebra G, Frampton D, Gallo Cassarino T, Raffle J, Hubb J, Ferns RB, Waters L, Tong CYW, Kozlakidis Z, Hayward A, Kellam P, Pillay D, Clark D, Nastouli E, Leigh Brown AJ, et al. A high HIV-1 strain variability in London, UK, revealed by full-genome analysis: Results from the ICONIC project. Plos One. 13: e0192081. PMID 29389981 DOI: 10.1371/Journal.Pone.0192081 |
0.368 |
|
| 2018 |
Brener J, Gall A, Hurst J, Batorsky R, Lavandier N, Chen F, Edwards A, Bolton C, Dsouza R, Allen T, Pybus OG, Kellam P, Matthews PC, Goulder PJR. Rapid HIV disease progression following superinfection in an HLA-B*27:05/B*57:01-positive transmission recipient. Retrovirology. 15: 7. PMID 29338738 DOI: 10.1186/S12977-018-0390-9 |
0.307 |
|
| 2017 |
Langat P, Raghwani J, Dudas G, Bowden TA, Edwards S, Gall A, Bedford T, Rambaut A, Daniels R, Russell C, Pybus OG, McCauley J, Kellam P, Watson SJ. Genome-wide evolutionary dynamics of influenza B viruses on a global scale. Plos Pathogens. 13: e1006749. PMID 29284042 DOI: 10.1371/Journal.Ppat.1006749 |
0.424 |
|
| 2017 |
McLaren PJ, Pulit SL, Gurdasani D, Bartha I, Shea PR, Pomilla C, Gupta N, Gkrania-Klotsas E, Young EH, Bannert N, Amo JD, Gill J, Gilmour J, Kellam P, Kelleher AD, et al. Evaluating the impact of functional genetic variation on HIV-1 control. The Journal of Infectious Diseases. PMID 28968755 DOI: 10.1093/Infdis/Jix470 |
0.324 |
|
| 2017 |
Oude Munnink BB, Phan MVT, Simmonds P, Koopmans MPG, Kellam P, van der Hoek L, Cotten M. Characterization of Posa and Posa-like virus genomes in fecal samples from humans, pigs, rats, and bats collected from a single location in Vietnam. Virus Evolution. 3: vex022. PMID 28948041 DOI: 10.1093/Ve/Vex022 |
0.424 |
|
| 2017 |
Ba Abdullah M, Palermo R, Palser A, Grayson NE, Kellam P, Correia S, Szymula A, White R. Heterogeneity of the Epstein-Barr virus major internal repeat reveals evolutionary mechanisms of EBV and a functional defect in the prototype EBV strain B95-8. Journal of Virology. PMID 28904201 DOI: 10.1128/Jvi.00920-17 |
0.397 |
|
| 2017 |
Githinji G, Agoti C, Munywoki P, Bett A, Kellam P, Cotton M, Nokes DJ. A27 Using whole genome sequence data and minority variant profiles to elucidate transmission patterns during RSV household outbreaks. Virus Evolution. 3. PMID 28845286 DOI: 10.1093/Ve/Vew036.026 |
0.336 |
|
| 2017 |
Blanquart F, Wymant C, Cornelissen M, Gall A, Bakker M, Bezemer D, Hall M, Hillebregt M, Ong SH, Albert J, Bannert N, Fellay J, Fransen K, Gourlay AJ, Grabowski MK, ... ... Kellam P, et al. Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe. Plos Biology. 15: e2001855. PMID 28604782 DOI: 10.1371/Journal.Pbio.2001855 |
0.394 |
|
| 2017 |
Bassano I, Ong SH, Lawless N, Whitehead T, Fife M, Kellam P. Accurate characterization of the IFITM locus using MiSeq and PacBio sequencing shows genetic variation in Galliformes. Bmc Genomics. 18: 419. PMID 28558694 DOI: 10.1186/S12864-017-3801-8 |
0.417 |
|
| 2017 |
Ratmann O, Wymant C, Colijn C, Danaviah S, Essex M, Frost SDW, Gall A, Gaiseitsiwe S, Grabowski M, Gray R, Guindon S, von Haeseler A, Kaleebu P, Kendall M, Kozlov A, ... ... Kellam P, et al. HIV-1 full-genome phylogenetics of generalized epidemics in sub-Saharan Africa: impact of missing nucleotide characters in next-generation sequences. Aids Research and Human Retroviruses. PMID 28540766 DOI: 10.1089/Aid.2017.0061 |
0.38 |
|
| 2017 |
Correia S, Palser A, Elgueta Karstegl C, Middeldorp JM, Ramayanti O, Cohen JI, Hildesheim A, Fellner MD, Wiels J, White RE, Kellam P, Farrell PJ. Natural variation of Epstein-Barr virus genes, proteins and pri-miRNA (revised). Journal of Virology. PMID 28515295 DOI: 10.1128/Jvi.00375-17 |
0.35 |
|
| 2017 |
Agoti CN, Munywoki PK, Phan MVT, Otieno JR, Kamau E, Bett A, Kombe I, Githinji G, Medley GF, Cane PA, Kellam P, Cotten M, Nokes DJ. Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis. Virus Evolution. 3: vex006. PMID 28458916 DOI: 10.1093/Ve/Vex006 |
0.452 |
|
| 2017 |
Dudas G, Carvalho LM, Bedford T, Tatem AJ, Baele G, Faria NR, Park DJ, Ladner JT, Arias A, Asogun D, Bielejec F, Caddy SL, Cotten M, D'Ambrozio J, Dellicour S, ... ... Kellam P, et al. Virus genomes reveal factors that spread and sustained the Ebola epidemic. Nature. PMID 28405027 DOI: 10.1038/Nature22040 |
0.414 |
|
| 2017 |
Harvala H, Frampton D, Grant P, Raffle J, Ferns RB, Kozlakidis Z, Kellam P, Pillay D, Hayward A, Nastouli E. Emergence of a novel subclade of influenza A(H3N2) virus in London, December 2016 to January 2017. Euro Surveillance : Bulletin Europeen Sur Les Maladies Transmissibles = European Communicable Disease Bulletin. 22. PMID 28251889 DOI: 10.2807/1560-7917.Es.2017.22.8.30466 |
0.311 |
|
| 2017 |
Stacey MA, Clare S, Clement M, Marsden M, Abdul-Karim J, Kane L, Harcourt K, Brandt C, Fielding CA, Smith SE, Wash RS, Brias SG, Stack G, Notley G, Cambridge EL, ... ... Kellam P, et al. The antiviral restriction factor IFN-induced transmembrane protein 3 prevents cytokine-driven CMV pathogenesis. The Journal of Clinical Investigation. PMID 28240600 DOI: 10.1172/Jci84889 |
0.384 |
|
| 2016 |
Phan MVT, Anh PH, Cuong NV, Munnink BBO, van der Hoek L, My PT, Tri TN, Bryant JE, Baker S, Thwaites G, Woolhouse M, Kellam P, Rabaa MA, Cotten M. Unbiased whole-genome deep sequencing of human and porcine stool samples reveals circulation of multiple groups of rotaviruses and a putative zoonotic infection. Virus Evolution. 2: vew027. PMID 28748110 DOI: 10.1093/Ve/Vew027 |
0.395 |
|
| 2016 |
Arias A, Watson SJ, Asogun D, Tobin EA, Lu J, Phan MVT, Jah U, Wadoum REG, Meredith L, Thorne L, Caddy S, Tarawalie A, Langat P, Dudas G, Faria NR, ... ... Kellam P, et al. Rapid outbreak sequencing of Ebola virus in Sierra Leone identifies transmission chains linked to sporadic cases. Virus Evolution. 2: vew016. PMID 28694998 DOI: 10.1093/Ve/Vew016 |
0.444 |
|
| 2016 |
Oude Munnink BB, Phan MV, van der Hoek L, Kellam P, Cotten M. Genome Sequences of a Novel Vietnamese Bat Bunyavirus. Genome Announcements. 4. PMID 28007850 DOI: 10.1128/Genomea.01366-16 |
0.389 |
|
| 2016 |
Oude Munnink BB, Cotten M, Canuti M, Deijs M, Jebbink MF, van Hemert FJ, Phan MV, Bakker M, Jazaeri Farsani SM, Kellam P, van der Hoek L. A Novel Astrovirus-Like RNA Virus Detected in Human Stool. Virus Evolution. 2: vew005. PMID 27774298 DOI: 10.1093/Ve/Vew005 |
0.452 |
|
| 2016 |
Foster TL, Wilson H, Iyer SS, Coss K, Doores K, Smith S, Kellam P, Finzi A, Borrow P, Hahn BH, Neil SJ. Resistance of Transmitted Founder HIV-1 to IFITM-Mediated Restriction. Cell Host & Microbe. PMID 27640936 DOI: 10.1016/J.Chom.2016.08.006 |
0.396 |
|
| 2016 |
Cornelissen M, Gall A, Vink M, Zorgdrager F, Binter Š, Edwards S, Jurriaans S, Bakker M, Ong SH, Gras L, van Sighem A, Bezemer D, de Wolf F, Reiss P, Kellam P, et al. From clinical sample to complete genome: comparing methods for the extraction of HIV-1 RNA for high-throughput deep sequencing. Virus Research. PMID 27497916 DOI: 10.1016/J.Virusres.2016.08.004 |
0.405 |
|
| 2016 |
Agoti CN, Kiyuka PK, Kamau E, Munywoki PK, Bett A, van der Hoek L, Kellam P, Nokes DJ, Cotten M. Human Rhinovirus B and C Genomes from Rural Coastal Kenya. Genome Announcements. 4. PMID 27469941 DOI: 10.1128/Genomea.00751-16 |
0.359 |
|
| 2016 |
Weston S, Czieso S, White IJ, Smith SE, Wash RS, Diaz-Soria C, Kellam P, Marsh M. Alphavirus restriction by IFITM proteins. Traffic (Copenhagen, Denmark). PMID 27219333 DOI: 10.1111/Tra.12416 |
0.354 |
|
| 2016 |
Kalchschmidt JS, Bashford-Rogers R, Paschos K, Gillman AC, Styles CT, Kellam P, Allday MJ. Epstein-Barr virus nuclear protein EBNA3C directly induces expression of AID and somatic mutations in B cells. The Journal of Experimental Medicine. PMID 27217538 DOI: 10.1084/Jem.20160120 |
0.41 |
|
| 2016 |
Lewis NS, Russell CA, Langat P, Anderson TK, Berger K, Bielejec F, Burke DF, Dudas G, Fonville JM, Fouchier RA, Kellam P, Koel BF, Lemey P, Nguyen T, Nuansrichy B, et al. The global antigenic diversity of swine influenza A viruses. Elife. 5. PMID 27113719 DOI: 10.7554/Elife.12217 |
0.381 |
|
| 2016 |
Oude Munnink BB, Phan MV, Kellam P, Cotten M. Complete Genome Characterization of Two Wild-Type Measles Viruses from Vietnamese Infants during the 2014 Outbreak. Genome Announcements. 4. PMID 27081130 DOI: 10.1128/Genomea.00250-16 |
0.434 |
|
| 2016 |
Dialdestoro K, Sibbesen JA, Maretty L, Raghwani J, Gall A, Kellam P, Pybus OG, Hein J, Jenkins PA. Coalescent Inference Using Serially Sampled, High-Throughput Sequencing Data from Intrahost HIV Infection. Genetics. 202: 1449-72. PMID 26857628 DOI: 10.1534/Genetics.115.177931 |
0.397 |
|
| 2016 |
Lewis NS, Russell CA, Langat P, Anderson TK, Berger K, Bielejec F, Burke DF, Dudas G, Fonville JM, Fouchier RA, Kellam P, Koel BF, Lemey P, Nguyen T, Nuansrichy B, et al. Author response: The global antigenic diversity of swine influenza A viruses Elife. DOI: 10.7554/Elife.12217.019 |
0.326 |
|
| 2016 |
Yebra G, Frampton D, Cassarino TG, Kozlakidis Z, Kellam P, Brown AL. The analysis of HIV full genomes reveals an unexpected HIV strain variability in London: initial results from ICONIC F1000research. 5. DOI: 10.7490/F1000Research.1112310.1 |
0.31 |
|
| 2016 |
Yebra G, Frampton D, Cassarino TG, Kozlakidis Z, Kellam P, Brown AL. Phylogenetic analysis of HIV full genomes in London, UK: initial results from ICONIC F1000research. 5. DOI: 10.7490/F1000Research.1111348.1 |
0.343 |
|
| 2016 |
Patel N, Ferns BR, Nastouli E, Kozlakidis Z, Kellam P, Morris S. Cost analysis of standard Sanger sequencing versus next generation sequencing in the ICONIC study The Lancet. 388. DOI: 10.1016/S0140-6736(16)32322-4 |
0.333 |
|
| 2015 |
Woolhouse ME, Rambaut A, Kellam P. Lessons from Ebola: Improving infectious disease surveillance to inform outbreak management. Science Translational Medicine. 7: 307rv5. PMID 26424572 DOI: 10.1126/Scitranslmed.Aab0191 |
0.356 |
|
| 2015 |
Rabaa MA, Tue NT, Phuc TM, Carrique-Mas J, Saylors K, Cotten M, Bryant JE, Nghia HD, Cuong NV, Pham HA, Berto A, Phat VV, Dung TT, Bao LH, Hoa NT, ... ... Kellam P, et al. The Vietnam Initiative on Zoonotic Infections (VIZIONS): A Strategic Approach to Studying Emerging Zoonotic Infectious Diseases. Ecohealth. PMID 26403795 DOI: 10.1007/S10393-015-1061-0 |
0.343 |
|
| 2015 |
Oude Munnink BB, Cotten M, Deijs M, Jebbink MF, Bakker M, Farsani SM, Canuti M, Kellam P, van der Hoek L. A novel genus in the order Picornavirales detected in human stool. The Journal of General Virology. PMID 26354795 DOI: 10.1099/Jgv.0.000279 |
0.429 |
|
| 2015 |
Nomikou K, Hughes J, Wash R, Kellam P, Breard E, Zientara S, Palmarini M, Biek R, Mertens P. Widespread Reassortment Shapes the Evolution and Epidemiology of Bluetongue Virus following European Invasion. Plos Pathogens. 11: e1005056. PMID 26252219 DOI: 10.1371/Journal.Ppat.1005056 |
0.404 |
|
| 2015 |
Watson SJ, Langat P, Reid SM, Lam TT, Cotten M, Kelly M, Van Reeth K, Qiu Y, Simon G, Bonin E, Foni E, Chiapponi C, Larsen L, Hjulsager C, Markowska-Daniel I, ... ... Kellam P, et al. Molecular Epidemiology and Evolution of Influenza Viruses Circulating within European Swine between 2009 and 2013. Journal of Virology. PMID 26202246 DOI: 10.1128/Jvi.00840-15 |
0.41 |
|
| 2015 |
Hoehn KB, Gall A, Bashford-Rogers R, Fidler SJ, Kaye S, Weber JN, McClure MO, Kellam P, Pybus OG. Dynamics of immunoglobulin sequence diversity in HIV-1 infected individuals. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 370. PMID 26194755 DOI: 10.1098/Rstb.2014.0241 |
0.402 |
|
| 2015 |
Brener J, Gall A, Batorsky R, Riddell L, Buus S, Leitman E, Kellam P, Allen T, Goulder P, Matthews PC. Disease progression despite protective HLA expression in an HIV-infected transmission pair. Retrovirology. 12: 55. PMID 26123575 DOI: 10.1186/S12977-015-0179-Z |
0.311 |
|
| 2015 |
Palser AL, Grayson NE, White RE, Corton C, Correia S, Ba Abdullah MM, Watson SJ, Cotten M, Arrand JR, Murray PG, Allday MJ, Rickinson AB, Young LS, Farrell PJ, Kellam P. Genome diversity of Epstein-Barr virus from multiple tumor types and normal infection. Journal of Virology. 89: 5222-37. PMID 25787276 DOI: 10.1128/Jvi.03614-14 |
0.47 |
|
| 2015 |
Pillay D, Herbeck J, Cohen MS, de Oliveira T, Fraser C, Ratmann O, Brown AL, Kellam P. PANGEA-HIV: phylogenetics for generalised epidemics in Africa. The Lancet. Infectious Diseases. 15: 259-61. PMID 25749217 DOI: 10.1016/S1473-3099(15)70036-8 |
0.353 |
|
| 2015 |
Hunt M, Gall A, Ong SH, Brener J, Ferns B, Goulder P, Nastouli E, Keane JA, Kellam P, Otto TD. IVA: accurate de novo assembly of RNA virus genomes. Bioinformatics (Oxford, England). 31: 2374-6. PMID 25725497 DOI: 10.1093/Bioinformatics/Btv120 |
0.448 |
|
| 2015 |
Hill SC, Murphy AA, Cotten M, Palser AL, Benson P, Lesellier S, Gormley E, Richomme C, Grierson S, Bhuachalla DN, Chambers M, Kellam P, Boschiroli ML, Ehlers B, Jarvis MA, et al. Discovery of a polyomavirus in European badgers (Meles meles) and the evolution of host range in the family Polyomaviridae. The Journal of General Virology. 96: 1411-22. PMID 25626684 DOI: 10.1099/Vir.0.000071 |
0.409 |
|
| 2015 |
Benfield CT, Smith SE, Wright E, Wash RS, Ferrara F, Temperton NJ, Kellam P. Bat and pig IFN-induced transmembrane protein 3 restrict cell entry by influenza virus and lyssaviruses. The Journal of General Virology. 96: 991-1005. PMID 25614588 DOI: 10.1099/Vir.0.000058 |
0.404 |
|
| 2015 |
Agoti CN, Otieno JR, Munywoki PK, Mwihuri AG, Cane PA, Nokes DJ, Kellam P, Cotten M. Local evolutionary patterns of human respiratory syncytial virus derived from whole-genome sequencing. Journal of Virology. 89: 3444-54. PMID 25609811 DOI: 10.1128/Jvi.03391-14 |
0.441 |
|
| 2015 |
Jazaeri Farsani SM, Oude Munnink BB, Canuti M, Deijs M, Cotten M, Jebbink MF, Verhoeven J, Kellam P, Loens K, Goossens H, Ieven M, van der Hoek L. Identification of a novel human rhinovirus C type by antibody capture VIDISCA-454. Viruses. 7: 239-51. PMID 25606972 DOI: 10.3390/V7010239 |
0.398 |
|
| 2015 |
Wilflingseder D, Schroll A, Hackl H, Gallasch R, Frampton D, Lass-Flörl C, Pancino G, Saez-Cirion A, Lambotte O, Weiss L, Kellam P, Trajanoski Z, Geijtenbeek T, Weiss G, Posch W. Immediate T-Helper 17 Polarization Upon Triggering CD11b/c on HIV-Exposed Dendritic Cells. The Journal of Infectious Diseases. 212: 44-56. PMID 25583169 DOI: 10.1093/Infdis/Jiv014 |
0.32 |
|
| 2015 |
Houldcroft CJ, Kellam P. Host genetics of Epstein-Barr virus infection, latency and disease. Reviews in Medical Virology. 25: 71-84. PMID 25430668 DOI: 10.1002/Rmv.1816 |
0.723 |
|
| 2015 |
Swann R, Bashford-Rogers R, Robinson M, Mills P, Barclay S, McLauchlan J, Kellam P, Patel A. PTU-110 What impact do hcv infection and subclinical cryoglobulinaemia have on the b cell repertoire? Gut. 64. DOI: 10.1136/Gutjnl-2015-309861.225 |
0.326 |
|
| 2015 |
Kwok H, Wu CW, Palser AL, Kellam P, Sham PC, Kwong DLW, Chiang AKS. Correction to Genomic diversity of Epstein-Barr virus genomes isolated from primary nasopharyngeal carcinoma biopsy samples [Journal of Virology, 88, 18, (2014), 10662-10672] Journal of Virology. 89: 886. DOI: 10.1128/Jvi.03005-14 |
0.346 |
|
| 2015 |
Stacey MA, Clare S, Marsden M, Clement M, Fielding CA, Johnson Z, Ferlin W, Jones SA, Kellam P, Humphreys IR. ID: 170: IFITM3 restricts virus-induced pathogenesis by regulating myeloid cell production of interleukin-6 Cytokine. 76: 96. DOI: 10.1016/J.Cyto.2015.08.184 |
0.317 |
|
| 2014 |
McCoy LE, Rutten L, Frampton D, Anderson I, Granger L, Bashford-Rogers R, Dekkers G, Strokappe NM, Seaman MS, Koh W, Grippo V, Kliche A, Verrips T, Kellam P, Fassati A, et al. Molecular evolution of broadly neutralizing Llama antibodies to the CD4-binding site of HIV-1. Plos Pathogens. 10: e1004552. PMID 25522326 DOI: 10.1371/Journal.Ppat.1004552 |
0.321 |
|
| 2014 |
Houldcroft CJ, Petrova V, Liu JZ, Frampton D, Anderson CA, Gall A, Kellam P. Host genetic variants and gene expression patterns associated with Epstein-Barr virus copy number in lymphoblastoid cell lines. Plos One. 9: e108384. PMID 25290448 DOI: 10.1371/Journal.Pone.0108384 |
0.716 |
|
| 2014 |
Elderfield RA, Watson SJ, Godlee A, Adamson WE, Thompson CI, Dunning J, Fernandez-Alonso M, Blumenkrantz D, Hussell T, Zambon M, Openshaw P, Kellam P, Barclay WS. Accumulation of human-adapting mutations during circulation of A(H1N1)pdm09 influenza virus in humans in the United Kingdom. Journal of Virology. 88: 13269-83. PMID 25210166 DOI: 10.1128/Jvi.01636-14 |
0.405 |
|
| 2014 |
Bashford-Rogers RJ, Palser AL, Idris SF, Carter L, Epstein M, Callard RE, Douek DC, Vassiliou GS, Follows GA, Hubank M, Kellam P. Capturing needles in haystacks: a comparison of B-cell receptor sequencing methods. Bmc Immunology. 15: 29. PMID 25189176 DOI: 10.1186/S12865-014-0029-0 |
0.341 |
|
| 2014 |
Cheung PP, Watson SJ, Choy KT, Fun Sia S, Wong DD, Poon LL, Kellam P, Guan Y, Malik Peiris JS, Yen HL. Generation and characterization of influenza A viruses with altered polymerase fidelity. Nature Communications. 5: 4794. PMID 25183443 DOI: 10.1038/Ncomms5794 |
0.385 |
|
| 2014 |
My PV, Rabaa MA, Donato C, Cowley D, Phat VV, Dung TT, Anh PH, Vinh H, Bryant JE, Kellam P, Thwaites G, Woolhouse ME, Kirkwood CD, Baker S. Novel porcine-like human G26P[19] rotavirus identified in hospitalized paediatric diarrhoea patients in Ho Chi Minh City, Vietnam. The Journal of General Virology. 95: 2727-33. PMID 25121549 DOI: 10.1099/Vir.0.068403-0 |
0.381 |
|
| 2014 |
Weston S, Czieso S, White IJ, Smith SE, Kellam P, Marsh M. A membrane topology model for human interferon inducible transmembrane protein 1. Plos One. 9: e104341. PMID 25105503 DOI: 10.1371/Journal.Pone.0104341 |
0.318 |
|
| 2014 |
Cotten M, Petrova V, Phan MV, Rabaa MA, Watson SJ, Ong SH, Kellam P, Baker S. Deep sequencing of norovirus genomes defines evolutionary patterns in an urban tropical setting. Journal of Virology. 88: 11056-69. PMID 25056894 DOI: 10.1128/Jvi.01333-14 |
0.467 |
|
| 2014 |
Kwok H, Wu CW, Palser AL, Kellam P, Sham PC, Kwong DL, Chiang AK. Genomic diversity of Epstein-Barr virus genomes isolated from primary nasopharyngeal carcinoma biopsy samples. Journal of Virology. 88: 10662-72. PMID 24991008 DOI: 10.1128/Jvi.01665-14 |
0.417 |
|
| 2014 |
Bouwman RD, Palser A, Parry CM, Coulter E, Rasaiyaah J, Kellam P, Jenner RG. Human immunodeficiency virus Tat associates with a specific set of cellular RNAs. Retrovirology. 11: 53. PMID 24990269 DOI: 10.1186/1742-4690-11-53 |
0.364 |
|
| 2014 |
Dennis AM, Herbeck JT, Brown AL, Kellam P, de Oliveira T, Pillay D, Fraser C, Cohen MS. Phylogenetic studies of transmission dynamics in generalized HIV epidemics: an essential tool where the burden is greatest? Journal of Acquired Immune Deficiency Syndromes (1999). 67: 181-95. PMID 24977473 DOI: 10.1097/Qai.0000000000000271 |
0.308 |
|
| 2014 |
Memish ZA, Cotten M, Meyer B, Watson SJ, Alsahafi AJ, Al Rabeeah AA, Corman VM, Sieberg A, Makhdoom HQ, Assiri A, Al Masri M, Aldabbagh S, Bosch BJ, Beer M, Müller MA, ... Kellam P, et al. Human infection with MERS coronavirus after exposure to infected camels, Saudi Arabia, 2013. Emerging Infectious Diseases. 20: 1012-5. PMID 24857749 DOI: 10.3201/Eid2006.140402 |
0.38 |
|
| 2014 |
Memish ZA, Al-Tawfiq JA, Makhdoom HQ, Assiri A, Alhakeem RF, Albarrak A, Alsubaie S, Al-Rabeeah AA, Hajomar WH, Hussain R, Kheyami AM, Almutairi A, Azhar EI, Drosten C, Watson SJ, ... Kellam P, et al. Respiratory tract samples, viral load, and genome fraction yield in patients with Middle East respiratory syndrome. The Journal of Infectious Diseases. 210: 1590-4. PMID 24837403 DOI: 10.1093/Infdis/Jiu292 |
0.337 |
|
| 2014 |
Memish ZA, Cotten M, Watson SJ, Kellam P, Zumla A, Alhakeem RF, Assiri A, Rabeeah AA, Al-Tawfiq JA. Community case clusters of Middle East respiratory syndrome coronavirus in Hafr Al-Batin, Kingdom of Saudi Arabia: a descriptive genomic study. International Journal of Infectious Diseases : Ijid : Official Publication of the International Society For Infectious Diseases. 23: 63-8. PMID 24699184 DOI: 10.1016/J.Ijid.2014.03.1372 |
0.333 |
|
| 2014 |
Cotten M, Oude Munnink B, Canuti M, Deijs M, Watson SJ, Kellam P, van der Hoek L. Full genome virus detection in fecal samples using sensitive nucleic acid preparation, deep sequencing, and a novel iterative sequence classification algorithm. Plos One. 9: e93269. PMID 24695106 DOI: 10.1371/Journal.Pone.0093269 |
0.467 |
|
| 2014 |
Cotten M, Watson SJ, Zumla AI, Makhdoom HQ, Palser AL, Ong SH, Al Rabeeah AA, Alhakeem RF, Assiri A, Al-Tawfiq JA, Albarrak A, Barry M, Shibl A, Alrabiah FA, Hajjar S, ... ... Kellam P, et al. Spread, circulation, and evolution of the Middle East respiratory syndrome coronavirus. Mbio. 5. PMID 24549846 DOI: 10.1128/Mbio.01062-13 |
0.428 |
|
| 2014 |
Gall A, Morris C, Kellam P, Berry N. Complete Genome Sequence of the WHO International Standard for HIV-1 RNA Determined by Deep Sequencing. Genome Announcements. 2. PMID 24503998 DOI: 10.1128/Genomea.01254-13 |
0.356 |
|
| 2014 |
Jones M, Dry IR, Frampton D, Singh M, Kanda RK, Yee MB, Kellam P, Hollinshead M, Kinchington PR, O'Toole EA, Breuer J. RNA-seq analysis of host and viral gene expression highlights interaction between varicella zoster virus and keratinocyte differentiation. Plos Pathogens. 10: e1003896. PMID 24497829 DOI: 10.1371/Journal.Ppat.1003896 |
0.382 |
|
| 2014 |
Smith SE, Weston S, Kellam P, Marsh M. IFITM proteins - Cellular inhibitors of viral entry Current Opinion in Virology. 4: 71-77. PMID 24480526 DOI: 10.1016/J.Coviro.2013.11.004 |
0.304 |
|
| 2014 |
Gurdasani D, Iles L, Dillon DG, Young EH, Olson AD, Naranbhai V, Fidler S, Gkrania-Klotsas E, Post FA, Kellam P, Porter K, Sandhu MS. A systematic review of definitions of extreme phenotypes of HIV control and progression. Aids (London, England). 28: 149-62. PMID 24149086 DOI: 10.1097/Qad.0000000000000049 |
0.308 |
|
| 2014 |
Brener J, Gall A, Batorsky R, Kellam P, Allen T, Matthews P, Goulder P. HIV Minor Variants Detected by Next Generation Sequencing: Impact on Immune Control of HIV in the Context of HLA-B*27:05 and HLA-B*57:01 Aids Research and Human Retroviruses. 30. DOI: 10.1089/Aid.2014.5384.Abstract |
0.314 |
|
| 2014 |
Archer EJ, Bashford-Rogers R, Hill B, Douek DC, Kellam P, Koup RA. Evolution of Antigen-specific B-cell Receptor Repertoires in Early SIV Infection Aids Research and Human Retroviruses. 30. DOI: 10.1089/Aid.2014.5023.Abstract |
0.385 |
|
| 2013 |
Alkhamis M, Perez A, Batey N, Howard W, Baillie G, Watson S, Franz S, Focosi-Snyman R, Onita I, Cioranu R, Turcitu M, Kellam P, Brown IH, Breed AC. Modeling the association of space, time, and host species with variation of the HA, NA, and NS genes of H5N1 highly pathogenic avian influenza viruses isolated from birds in Romania in 2005-2007. Avian Diseases. 57: 612-21. PMID 24283126 DOI: 10.1637/10494-011713-Reg.1 |
0.385 |
|
| 2013 |
Everitt AR, Clare S, McDonald JU, Kane L, Harcourt K, Ahras M, Lall A, Hale C, Rodgers A, Young DB, Haque A, Billker O, Tregoning JS, Dougan G, Kellam P. Defining the range of pathogens susceptible to Ifitm3 restriction using a knockout mouse model. Plos One. 8: e80723. PMID 24278312 DOI: 10.1371/Journal.Pone.0080723 |
0.426 |
|
| 2013 |
Lin TY, Chin CR, Everitt AR, Clare S, Perreira JM, Savidis G, Aker AM, John SP, Sarlah D, Carreira EM, Elledge SJ, Kellam P, Brass AL. Amphotericin B increases influenza A virus infection by preventing IFITM3-mediated restriction. Cell Reports. 5: 895-908. PMID 24268777 DOI: 10.1016/J.Celrep.2013.10.033 |
0.405 |
|
| 2013 |
Oude Munnink BB, Jazaeri Farsani SM, Deijs M, Jonkers J, Verhoeven JT, Ieven M, Goossens H, de Jong MD, Berkhout B, Loens K, Kellam P, Bakker M, Canuti M, Cotten M, van der Hoek L. Autologous antibody capture to enrich immunogenic viruses for viral discovery. Plos One. 8: e78454. PMID 24223808 DOI: 10.1371/Journal.Pone.0078454 |
0.442 |
|
| 2013 |
Smith SE, Gibson MS, Wash RS, Ferrara F, Wright E, Temperton N, Kellam P, Fife M. Chicken interferon-inducible transmembrane protein 3 restricts influenza viruses and lyssaviruses in vitro. Journal of Virology. 87: 12957-66. PMID 24067955 DOI: 10.1128/Jvi.01443-13 |
0.427 |
|
| 2013 |
Cotten M, Watson SJ, Kellam P, Al-Rabeeah AA, Makhdoom HQ, Assiri A, Al-Tawfiq JA, Alhakeem RF, Madani H, AlRabiah FA, Al Hajjar S, Al-nassir WN, Albarrak A, Flemban H, Balkhy HH, et al. Transmission and evolution of the Middle East respiratory syndrome coronavirus in Saudi Arabia: a descriptive genomic study. Lancet. 382: 1993-2002. PMID 24055451 DOI: 10.1016/S0140-6736(13)61887-5 |
0.366 |
|
| 2013 |
Bashford-Rogers RJ, Palser AL, Huntly BJ, Rance R, Vassiliou GS, Follows GA, Kellam P. Network properties derived from deep sequencing of human B-cell receptor repertoires delineate B-cell populations. Genome Research. 23: 1874-84. PMID 23742949 DOI: 10.1101/Gr.154815.113 |
0.318 |
|
| 2013 |
Cotten M, Lam TT, Watson SJ, Palser AL, Petrova V, Grant P, Pybus OG, Rambaut A, Guan Y, Pillay D, Kellam P, Nastouli E. Full-genome deep sequencing and phylogenetic analysis of novel human betacoronavirus. Emerging Infectious Diseases. 19: 736-42B. PMID 23693015 DOI: 10.3201/Eid1905.130057 |
0.463 |
|
| 2013 |
Kati S, Tsao EH, Günther T, Weidner-Glunde M, Rothämel T, Grundhoff A, Kellam P, Schulz TF. Activation of the b cell antigen receptor triggers reactivation of latent kaposi's sarcoma-associated herpesvirus in B cells Journal of Virology. 87: 8004-8016. PMID 23678173 DOI: 10.1128/Jvi.00506-13 |
0.345 |
|
| 2013 |
John SP, Chin CR, Perreira JM, Feeley EM, Aker AM, Savidis G, Smith SE, Elia AE, Everitt AR, Vora M, Pertel T, Elledge SJ, Kellam P, Brass AL. The CD225 domain of IFITM3 is required for both IFITM protein association and inhibition of influenza A virus and dengue virus replication. Journal of Virology. 87: 7837-52. PMID 23658454 DOI: 10.1128/Jvi.00481-13 |
0.379 |
|
| 2013 |
Baker KS, Leggett RM, Bexfield NH, Alston M, Daly G, Todd S, Tachedjian M, Holmes CE, Crameri S, Wang LF, Heeney JL, Suu-Ire R, Kellam P, Cunningham AA, Wood JL, et al. Metagenomic study of the viruses of African straw-coloured fruit bats: detection of a chiropteran poxvirus and isolation of a novel adenovirus. Virology. 441: 95-106. PMID 23562481 DOI: 10.1016/J.Virol.2013.03.014 |
0.413 |
|
| 2013 |
Murcia PR, Baillie GJ, Stack JC, Jervis C, Elton D, Mumford JA, Daly J, Kellam P, Grenfell BT, Holmes EC, Wood JL. Evolution of equine influenza virus in vaccinated horses. Journal of Virology. 87: 4768-71. PMID 23388708 DOI: 10.1128/Jvi.03379-12 |
0.326 |
|
| 2013 |
Bhatt S, Lam TT, Lycett SJ, Leigh Brown AJ, Bowden TA, Holmes EC, Guan Y, Wood JL, Brown IH, Kellam P, Pybus OG. The evolutionary dynamics of influenza A virus adaptation to mammalian hosts. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 368: 20120382. PMID 23382435 DOI: 10.1098/Rstb.2012.0382 |
0.427 |
|
| 2013 |
Watson SJ, Welkers MR, Depledge DP, Coulter E, Breuer JM, de Jong MD, Kellam P. Viral population analysis and minority-variant detection using short read next-generation sequencing. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 368: 20120205. PMID 23382427 DOI: 10.1098/Rstb.2012.0205 |
0.43 |
|
| 2013 |
Zhang YH, Zhao Y, Li N, Peng YC, Giannoulatou E, Jin RH, Yan HP, Wu H, Liu JH, Liu N, Wang DY, Shu YL, Ho LP, Kellam P, McMichael A, et al. Interferon-induced transmembrane protein-3 genetic variant rs12252-C is associated with severe influenza in Chinese individuals. Nature Communications. 4: 1418. PMID 23361009 DOI: 10.1038/Ncomms2433 |
0.346 |
|
| 2013 |
Gall A, Kaye S, Hué S, Bonsall D, Rance R, Baillie GJ, Fidler SJ, Weber JN, McClure MO, Kellam P. Restriction of V3 region sequence divergence in the HIV-1 envelope gene during antiretroviral treatment in a cohort of recent seroconverters. Retrovirology. 10: 8. PMID 23331949 DOI: 10.1186/1742-4690-10-8 |
0.428 |
|
| 2013 |
Kelly GL, Stylianou J, Rasaiyaah J, Wei W, Thomas W, Croom-Carter D, Kohler C, Spang R, Woodman C, Kellam P, Rickinson AB, Bell AI. Different patterns of Epstein-Barr virus latency in endemic Burkitt lymphoma (BL) lead to distinct variants within the BL-associated gene expression signature. Journal of Virology. 87: 2882-94. PMID 23269792 DOI: 10.1128/Jvi.03003-12 |
0.413 |
|
| 2012 |
Wright DW, Hall BA, Kellam P, Coveney PV. Global Conformational Dynamics of HIV-1 Reverse Transcriptase Bound to Non-Nucleoside Inhibitors. Biology. 1: 222-44. PMID 24832224 DOI: 10.3390/Biology1020222 |
0.328 |
|
| 2012 |
Hughes J, Allen RC, Baguelin M, Hampson K, Baillie GJ, Elton D, Newton JR, Kellam P, Wood JL, Holmes EC, Murcia PR. Transmission of equine influenza virus during an outbreak is characterized by frequent mixed infections and loose transmission bottlenecks. Plos Pathogens. 8: e1003081. PMID 23308065 DOI: 10.1371/Journal.Ppat.1003081 |
0.434 |
|
| 2012 |
Gall A, Ferns B, Morris C, Watson S, Cotten M, Robinson M, Berry N, Pillay D, Kellam P. Universal amplification, next-generation sequencing, and assembly of HIV-1 genomes. Journal of Clinical Microbiology. 50: 3838-44. PMID 22993180 DOI: 10.1128/Jcm.01516-12 |
0.416 |
|
| 2012 |
Lycett SJ, Baillie G, Coulter E, Bhatt S, Kellam P, McCauley JW, Wood JL, Brown IH, Pybus OG, Leigh Brown AJ. Estimating reassortment rates in co-circulating Eurasian swine influenza viruses. The Journal of General Virology. 93: 2326-36. PMID 22971819 DOI: 10.1099/Vir.0.044503-0 |
0.369 |
|
| 2012 |
Wash R, Calabressi S, Franz S, Griffiths SJ, Goulding D, Tan EP, Wise H, Digard P, Haas J, Efstathiou S, Kellam P. Permissive and restricted virus infection of murine embryonic stem cells. The Journal of General Virology. 93: 2118-30. PMID 22815272 DOI: 10.1099/Vir.0.043406-0 |
0.419 |
|
| 2012 |
Murcia PR, Hughes J, Battista P, Lloyd L, Baillie GJ, Ramirez-Gonzalez RH, Ormond D, Oliver K, Elton D, Mumford JA, Caccamo M, Kellam P, Grenfell BT, Holmes EC, Wood JL. Evolution of an Eurasian avian-like influenza virus in naïve and vaccinated pigs. Plos Pathogens. 8: e1002730. PMID 22693449 DOI: 10.1371/Journal.Ppat.1002730 |
0.401 |
|
| 2012 |
Everitt AR, Clare S, Pertel T, John SP, Wash RS, Smith SE, Chin CR, Feeley EM, Sims JS, Adams DJ, Wise HM, Kane L, Goulding D, Digard P, Anttila V, ... ... Kellam P, et al. IFITM3 restricts the morbidity and mortality associated with influenza. Nature. 484: 519-23. PMID 22446628 DOI: 10.1016/J.Ijid.2012.05.191 |
0.4 |
|
| 2012 |
Archer J, Baillie G, Watson SJ, Kellam P, Rambaut A, Robertson DL. Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II. Bmc Bioinformatics. 13: 47. PMID 22443413 DOI: 10.1186/1471-2105-13-47 |
0.367 |
|
| 2012 |
Reperant LA, van de Bildt MW, van Amerongen G, Leijten LM, Watson S, Palser A, Kellam P, Eissens AC, Frijlink HW, Osterhaus AD, Kuiken T. Marked endotheliotropism of highly pathogenic avian influenza virus H5N1 following intestinal inoculation in cats. Journal of Virology. 86: 1158-65. PMID 22090101 DOI: 10.1128/Jvi.06375-11 |
0.386 |
|
| 2012 |
Baillie GJ, Galiano M, Agapow PM, Myers R, Chiam R, Gall A, Palser AL, Watson SJ, Hedge J, Underwood A, Platt S, McLean E, Pebody RG, Rambaut A, Green J, ... ... Kellam P, et al. Evolutionary dynamics of local pandemic H1N1/2009 influenza virus lineages revealed by whole-genome analysis. Journal of Virology. 86: 11-8. PMID 22013031 DOI: 10.1128/Jvi.05347-11 |
0.425 |
|
| 2012 |
Depledge DP, Palser AL, Watson SJ, Lai IY, Gray ER, Grant P, Kanda RK, Leproust E, Kellam P, Breuer J. Correction: Specific Capture and Whole-Genome Sequencing of Viruses from Clinical Samples Plos One. 7. DOI: 10.1371/Annotation/3F1444Bc-Ab9D-4112-958A-2E068792F26F |
0.432 |
|
| 2011 |
Daly GM, Bexfield N, Heaney J, Stubbs S, Mayer AP, Palser A, Kellam P, Drou N, Caccamo M, Tiley L, Alexander GJ, Bernal W, Heeney JL. A viral discovery methodology for clinical biopsy samples utilising massively parallel next generation sequencing. Plos One. 6: e28879. PMID 22216131 DOI: 10.1371/Journal.Pone.0028879 |
0.4 |
|
| 2011 |
Depledge DP, Palser AL, Watson SJ, Lai IY, Gray ER, Grant P, Kanda RK, Leproust E, Kellam P, Breuer J. Specific capture and whole-genome sequencing of viruses from clinical samples. Plos One. 6: e27805. PMID 22125625 DOI: 10.1371/Journal.Pone.0027805 |
0.435 |
|
| 2011 |
Katzourakis A, Hué S, Kellam P, Towers GJ. Phylogenetic analysis of murine leukemia virus sequences from longitudinally sampled chronic fatigue syndrome patients suggests PCR contamination rather than viral evolution Journal of Virology. 85: 10909-10913. PMID 21849443 DOI: 10.1128/Jvi.00827-11 |
0.401 |
|
| 2011 |
Gray ER, Garson JA, Breuer J, Edwards S, Kellam P, Pillay D, Towers GJ. No evidence of XMRV or related retroviruses in a London HIV-1-positive patient cohort. Plos One. 6: e18096. PMID 21448291 DOI: 10.1371/Journal.Pone.0018096 |
0.388 |
|
| 2011 |
Bexfield N, Kellam P. Metagenomics and the molecular identification of novel viruses. Veterinary Journal (London, England : 1997). 190: 191-8. PMID 21111643 DOI: 10.1016/J.Tvjl.2010.10.014 |
0.407 |
|
| 2011 |
Lai IYC, Farrell PJ, Kellam P. X-box binding protein 1 induces the expression of the lytic cycle transactivator of Kaposi's sarcoma-associated herpesvirus but not Epstein-Barr virus in co-infected primary effusion lymphoma Journal of General Virology. 92: 421-431. PMID 20980528 DOI: 10.1099/Vir.0.025494-0 |
0.355 |
|
| 2010 |
Hué S, Gray ER, Gall A, Katzourakis A, Tan CP, Houldcroft CJ, McLaren S, Pillay D, Futreal A, Garson JA, Pybus OG, Kellam P, Towers GJ. Disease-associated XMRV sequences are consistent with laboratory contamination. Retrovirology. 7: 111. PMID 21171979 DOI: 10.1186/1742-4690-7-111 |
0.7 |
|
| 2010 |
McDonald C, Karstegl CE, Kellam P, Farrell PJ. Regulation of the Epstein-Barr virus Zp promoter in B lymphocytes during reactivation from latency. The Journal of General Virology. 91: 622-9. PMID 19923262 DOI: 10.1099/Vir.0.017277-0 |
0.341 |
|
| 2009 |
Tsao EH, Kellam P, Sin CS, Rasaiyaah J, Griffiths PD, Clark DA. Microarray-based determination of the lytic cascade of human herpesvirus 6B. The Journal of General Virology. 90: 2581-91. PMID 19625464 DOI: 10.1099/Vir.0.012815-0 |
0.342 |
|
| 2009 |
Noursadeghi M, Tsang J, Miller RF, Straschewski S, Kellam P, Chain BM, Katz DR. Genome-wide innate immune responses in HIV-1-infected macrophages are preserved despite attenuation of the NF-kappa B activation pathway. Journal of Immunology (Baltimore, Md. : 1950). 182: 319-28. PMID 19109163 DOI: 10.4049/Jimmunol.182.1.319 |
0.367 |
|
| 2008 |
Lopes AR, Kellam P, Das A, Dunn C, Kwan A, Turner J, Peppa D, Gilson RJ, Gehring A, Bertoletti A, Maini MK. Bim-mediated deletion of antigen-specific CD8 T cells in patients unable to control HBV infection. The Journal of Clinical Investigation. 118: 1835-45. PMID 18398508 DOI: 10.1172/Jci33402 |
0.3 |
|
| 2008 |
Yeats C, Lees J, Reid A, Kellam P, Martin N, Liu X, Orengo C. Gene3D: comprehensive structural and functional annotation of genomes. Nucleic Acids Research. 36: D414-8. PMID 18032434 DOI: 10.1093/Nar/Gkm1019 |
0.322 |
|
| 2007 |
Wilson SJ, Tsao EH, Webb BL, Ye H, Dalton-Griffin L, Tsantoulas C, Gale CV, Du MQ, Whitehouse A, Kellam P. X box binding protein XBP-1s transactivates the Kaposi's sarcoma-associated herpesvirus (KSHV) ORF50 promoter, linking plasma cell differentiation to KSHV reactivation from latency. Journal of Virology. 81: 13578-86. PMID 17928342 DOI: 10.1128/Jvi.01663-07 |
0.341 |
|
| 2007 |
Gifford RJ, de Oliveira T, Rambaut A, Pybus OG, Dunn D, Vandamme AM, Kellam P, Pillay D. Phylogenetic surveillance of viral genetic diversity and the evolving molecular epidemiology of human immunodeficiency virus type 1. Journal of Virology. 81: 13050-6. PMID 17898057 DOI: 10.1128/Jvi.00889-07 |
0.439 |
|
| 2007 |
Shun MC, Raghavendra NK, Vandegraaff N, Daigle JE, Hughes S, Kellam P, Cherepanov P, Engelman A. LEDGF/p75 functions downstream from preintegration complex formation to effect gene-specific HIV-1 integration. Genes & Development. 21: 1767-78. PMID 17639082 DOI: 10.1101/Gad.1565107 |
0.339 |
|
| 2007 |
Kerr JR, Christian P, Hodgetts A, Langford PR, Devanur LD, Petty R, Burke B, Sinclair LI, Richards SC, Montgomery J, McDermott CR, Harrison TJ, Kellam P, Nutt DJ, Holgate ST, et al. Current research priorities in chronic fatigue syndrome/myalgic encephalomyelitis: disease mechanisms, a diagnostic test and specific treatments. Journal of Clinical Pathology. 60: 113-6. PMID 16935968 DOI: 10.1136/Jcp.2006.042374 |
0.308 |
|
| 2006 |
Gifford R, de Oliveira T, Rambaut A, Myers RE, Gale CV, Dunn D, Shafer R, Vandamme AM, Kellam P, Pillay D. Assessment of automated genotyping protocols as tools for surveillance of HIV-1 genetic diversity. Aids (London, England). 20: 1521-9. PMID 16847407 DOI: 10.1097/01.Aids.0000237368.64488.Ae |
0.327 |
|
| 2006 |
Myers R, Clark C, Khan A, Kellam P, Tedder R. Genotyping Hepatitis B virus from whole- and sub-genomic fragments using position-specific scoring matrices in HBV STAR. Journal of General Virology. 87: 1459-1464. PMID 16690910 DOI: 10.1099/Vir.0.81734-0 |
0.39 |
|
| 2006 |
Kellam P, Weiss RA. Infectogenomics: Insights from the Host Genome into Infectious Diseases Cell. 124: 695-697. PMID 16497580 DOI: 10.1016/J.Cell.2006.02.003 |
0.337 |
|
| 2005 |
Kaushik N, Fear D, Richards SCM, McDermott CR, Nuwaysir EF, Kellam P, Harrison TJ, Wilkinson RJ, Tyrrell DAJ, Holgate ST, Kerr JR. Gene expression in peripheral blood mononuclear cells from patients with chronic fatigue syndrome Journal of Clinical Pathology. 58: 826-832. PMID 16049284 DOI: 10.1136/Jcp.2005.025718 |
0.323 |
|
| 2005 |
Myers RE, Gale CV, Harrison A, Takeuchi Y, Kellam P. A statistical model for HIV-1 sequence classification using the subtype analyser (STAR) Bioinformatics. 21: 3535-3540. PMID 16046498 DOI: 10.1093/Bioinformatics/Bti569 |
0.328 |
|
| 2004 |
Gale CV, Myers R, Tedder RS, Williams IG, Kellam P. Development of a novel human immunodeficiency virus type 1 subtyping tool, Subtype Analyzer (STAR): analysis of subtype distribution in London. Aids Research and Human Retroviruses. 20: 457-464. PMID 15186519 DOI: 10.1089/088922204323087697 |
0.347 |
|
| 2004 |
Gubser C, Hué S, Kellam P, Smith GL. Poxvirus genomes: a phylogenetic analysis. The Journal of General Virology. 85: 105-17. PMID 14718625 DOI: 10.1099/Vir.0.19565-0 |
0.448 |
|
| 2004 |
Kellam P, Holzerlandt R, Gramoustianou E, Jenner R, Kwan A. Viral bioinformatics: computational views of host and pathogen. Novartis Foundation Symposium. 254: 234-47; discussion 2. PMID 14712941 |
0.33 |
|
| 2003 |
Jenner RG, Maillard K, Cattini N, Weiss RA, Boshoff C, Wooster R, Kellam P. Kaposi's sarcoma-associated herpesvirus-infected primary effusion lymphoma has a plasma cell gene expression profile Proceedings of the National Academy of Sciences of the United States of America. 100: 10399-10404. PMID 12925741 DOI: 10.1073/Pnas.1630810100 |
0.338 |
|
| 2003 |
Voisset C, Myers RE, Carne A, Kellam P, Griffiths DJ. Rabbit endogenous retrovirus-H encodes a functional protease. The Journal of General Virology. 84: 215-25. PMID 12533718 DOI: 10.1099/Vir.0.18670-0 |
0.321 |
|
| 2003 |
Kellam P, Holzerlandt R, Gramoustianou E, Jenner R, Kwan A. Viral bioinformatics: computational views of host and pathogen. Novartis Foundation Symposium. 254: 234-249. DOI: 10.1002/0470090766.Ch16 |
0.437 |
|
| 2002 |
Holzerlandt R, Orengo C, Kellam P, Albà MM. Identification of new herpesvirus gene homologs in the human genome. Genome Research. 12: 1739-1748. PMID 12421761 DOI: 10.1101/Gr.334302 |
0.456 |
|
| 2002 |
Ahn JW, Powell KL, Kellam P, Alber DG. Gammaherpesvirus Lytic Gene Expression as Characterized by DNA Array Journal of Virology. 76: 6244-6256. PMID 12021358 DOI: 10.1128/Jvi.76.12.6244-6256.2002 |
0.32 |
|
| 2001 |
Kellam P. Post-genomic virology: the impact of bioinformatics, microarrays and proteomics on investigating host and pathogen interactions. Reviews in Medical Virology. 11: 313-329. PMID 11590669 DOI: 10.1002/Rmv.328 |
0.355 |
|
| 2001 |
Albà MM, Das R, Orengo CA, Kellam P. Genomewide function conservation and phylogeny in the Herpesviridae. Genome Research. 11: 43-54. PMID 11156614 DOI: 10.1101/Gr.149801 |
0.34 |
|
| 2001 |
Jenner RG, Albà MM, Boshoff C, Kellam P. Kaposi's sarcoma-associated herpesvirus latent and lytic gene expression as revealed by DNA arrays Journal of Virology. 75: 891-902. PMID 11134302 DOI: 10.1128/Jvi.75.2.891-902.2001 |
0.354 |
|
| 2001 |
Albà MM, Lee D, Pearl FM, Shepherd AJ, Martin N, Orengo CA, Kellam P. VIDA: a virus database system for the organization of animal virus genome open reading frames. Nucleic Acids Research. 29: 133-6. PMID 11125070 DOI: 10.1093/Nar/29.1.133 |
0.404 |
|
| 2000 |
Kellam P. Host-pathogen studies in the post-genomic era Genome Biology. 1: 1-4. PMID 11178231 DOI: 10.1186/Gb-2000-1-2-Reviews1009 |
0.304 |
|
| 2000 |
Radkov SA, Kellam P, Boshoff C. The latent nuclear antigen of Kaposi sarcoma-associated herpesvirus targets the retinoblastoma-E2F pathway and with the oncogene Hras transforms primary rat cells Nature Medicine. 6: 1121-1127. PMID 11017143 DOI: 10.1038/80459 |
0.327 |
|
| 2000 |
Kellam P. Gene expression following HIV-1 infection Genome Biology. 1: 1-3. DOI: 10.1186/Gb-2000-1-2-Reports0045 |
0.346 |
|
| 2000 |
Kellam P. Predicting protein interactions from sequence Genome Biology. 1: 1-4. DOI: 10.1186/Gb-2000-1-1-Reports009 |
0.342 |
|
| 2000 |
Dupin N, Diss TL, Kellam P, Tulliez M, Du M, Sicard D, Weiss RA, Isaacson PG, Boshoff C. HHV-8 is associated with a plasmablastic variant of Castleman disease that is linked to HHV-8-positive plasmablastic lymphoma. Blood. 95: 1406-1412. DOI: 10.1182/Blood.V95.4.1406.004K26_1406_1412 |
0.32 |
|
| 1999 |
Kellam P, Bourboulia D, Dupin N, Shotton C, Fisher C, Talbot S, Boshoff C, Weiss RA. Characterization of Monoclonal Antibodies Raised against the Latent Nuclear Antigen of Human Herpesvirus 8 Journal of Virology. 73: 5149-5155. PMID 10233979 DOI: 10.1128/Jvi.73.6.5149-5155.1999 |
0.336 |
|
| 1999 |
Talbot SJ, Weiss RA, Kellam P, Boshoff C. Transcriptional analysis of human herpesvirus-8 open reading frames 71, 72, 73, K14, and 74 in a primary effusion lymphoma cell line Virology. 257: 84-94. PMID 10208923 DOI: 10.1006/Viro.1999.9672 |
0.307 |
|
| 1999 |
Dupin N, Fisher C, Kellam P, Ariad S, Tulliez M, Franck N, Van Marck E, Salmon D, Gorin I, Escande JP, Weiss RA, Alitalo K, Boshoff C. Distribution of human herpesvirus-8 latently infected cells in Kaposi's sarcoma, multicentric Castleman's disease, and primary effusion lymphoma Proceedings of the National Academy of Sciences of the United States of America. 96: 4546-4551. PMID 10200299 DOI: 10.1073/Pnas.96.8.4546 |
0.322 |
|
| 1998 |
Weiss RA, Whitby D, Talbot S, Kellam P, Boshoff C. Human Herpesvirus Type 8 and Kaposi's Sarcoma Journal of the National Cancer Institute Monographs. 1998: 51-54. PMID 9709303 DOI: 10.1093/Oxfordjournals.Jncimonographs.A024173 |
0.411 |
|
| 1998 |
Kellam P. Molecular identification of novel viruses. Trends in Microbiology. 6: 160-166. PMID 9587194 DOI: 10.1016/S0966-842X(98)01239-6 |
0.407 |
|
| 1997 |
Weiss RA, Kellam P. Illicit viral DNA Nature. 390: 235-236. PMID 9384369 DOI: 10.1038/36740 |
0.313 |
|
| 1995 |
Kellam P, Larder BA. Retroviral recombination can lead to linkage of reverse transcriptase mutations that confer increased zidovudine resistance. Journal of Virology. 69: 669-674. PMID 7529334 DOI: 10.1128/Jvi.69.2.669-674.1995 |
0.37 |
|
| 1994 |
Kellam P, Larder BA. Recombinant virus assay: a rapid, phenotypic assay for assessment of drug susceptibility of human immunodeficiency virus type 1 isolates. Antimicrobial Agents and Chemotherapy. 38: 23-30. PMID 8141575 DOI: 10.1128/Aac.38.1.23 |
0.414 |
|
| 1994 |
Kellam P, Boucher CAB, Tijnagel JMGH, Larder BA. Zidovudine treatment results in the selection of human immunodeficiency virus type 1 variants whose genotypes confer increasing levels of drug resistance. Journal of General Virology. 75: 341-351. PMID 7509370 DOI: 10.1099/0022-1317-75-2-341 |
0.357 |
|
| 1993 |
Larder BA, Kohli A, Kellam P, Kemp SD, Kronick M, Henfrey RD. Quantitative detection of HIV-1 drug resistance mutations by automated DNA sequencing. Nature. 365: 671-3. PMID 8413632 DOI: 10.1038/365671A0 |
0.32 |
|
| 1993 |
Boucher CAB, Leeuwen RV, Kellam P, Schipper P, Tijnagel J, Lange JMA, Larder BA. Effects of discontinuation of zidovudine treatment on zidovudine sensitivity of human immunodeficiency virus type 1 isolates. Antimicrobial Agents and Chemotherapy. 37: 1525-1530. PMID 8103317 DOI: 10.1128/Aac.37.7.1525 |
0.378 |
|
| 1992 |
Kellam P, Boucher CAB, Larder BA. Fifth mutation in human immunodeficiency virus type 1 reverse transcriptase contributes to the development of high-level resistance to zidovudine. Proceedings of the National Academy of Sciences of the United States of America. 89: 1934-1938. PMID 1371886 DOI: 10.1073/Pnas.89.5.1934 |
0.343 |
|
| 1992 |
Boucher CAB, O'Sullivan E, Mulder JW, Ramautarsing C, Kellam P, Darby G, Lange JMA, Goudsmit J, Larder BA. Ordered appearance of zidovudine resistance mutations during treatment of 18 human immunodeficiency virus-positive subjects. The Journal of Infectious Diseases. 165: 105-110. PMID 1370174 DOI: 10.1093/Infdis/165.1.105 |
0.314 |
|
| 1992 |
Boucher CAB, Lange JMA, Miedema FF, Weverling GJ, Koot M, Mulder JW, Goudsmit J, Kellam P, Larder BA, Tersmette M. HIV-1 biological phenotype and the development of zidovudine resistance in relation to disease progression in asymptomatic individuals during treatment. Aids. 6: 1259-1264. PMID 1282015 DOI: 10.1097/00002030-199211000-00003 |
0.346 |
|
| 1991 |
St Clair MH, Martin JL, Tudor-Williams G, Bach MC, Vavro CL, King DM, Kellam P, Kemp SD, Larder BA. Resistance to ddI and sensitivity to AZT induced by a mutation in HIV-1 reverse transcriptase. Science (New York, N.Y.). 253: 1557-9. PMID 1716788 DOI: 10.1126/Science.1716788 |
0.312 |
|
| 1991 |
Larder BA, Kellam P, Kemp SD. Zidovudine resistance predicted by direct detection of mutations in DNA from HIV-infected lymphocytes. Aids (London, England). 5: 137-44. PMID 1709563 DOI: 10.1097/00002030-199102000-00002 |
0.325 |
|
| 1991 |
Daly A, Kellam P, Berry ST, Chojecki AJ, Barnes SR. The isolation and characterisation of plant sequences homologous to human hypervariable minisatellites Exs. 58: 330-341. PMID 1651259 DOI: 10.1007/978-3-0348-7312-3_23 |
0.338 |
|
| 1990 |
Boucher CAB, Tersmette M, Lange JMA, Kellam P, Goede REYD, Mulder JW, Darby G, Goudsmit J, Larder BA. Zidovudine sensitivity of human immunodeficiency viruses from high-risk, symptom-free individuals during therapy. The Lancet. 336: 585-590. PMID 1975378 DOI: 10.1016/0140-6736(90)93391-2 |
0.327 |
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