John D. Gross - Publications

Pharmaceutical Chemistry University of California, San Francisco, San Francisco, CA 

73 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Walter M, Chen IP, Vallejo-Gracia A, Kim IJ, Bielska O, Lam VL, Hayashi JM, Cruz A, Shah S, Soveg FW, Gross JD, Krogan NJ, Jerome KR, Schilling B, Ott M, et al. SIRT5 is a proviral factor that interacts with SARS-CoV-2 Nsp14 protein. Plos Pathogens. 18: e1010811. PMID 36095012 DOI: 10.1371/journal.ppat.1010811  0.339
2022 Peters JK, Tibble RW, Warminski M, Jemielity J, Gross JD. Structure of the poxvirus decapping enzyme D9 reveals its mechanism of cap recognition and catalysis. Structure (London, England : 1993). PMID 35290794 DOI: 10.1016/j.str.2022.02.012  0.36
2022 Walter M, Chen IP, Vallejo-Gracia A, Kim IJ, Bielska O, Lam VL, Hayashi JM, Cruz A, Shah S, Gross JD, Krogan NJ, Schilling B, Ott M, Verdin E. SIRT5 is a proviral factor that interacts with SARS-CoV-2 Nsp14 protein. Biorxiv : the Preprint Server For Biology. PMID 35018374 DOI: 10.1101/2022.01.04.474979  0.342
2021 Tibble RW, Depaix A, Kowalska J, Jemielity J, Gross JD. Biomolecular condensates amplify mRNA decapping by biasing enzyme conformation. Nature Chemical Biology. 17: 615-623. PMID 33767388 DOI: 10.1038/s41589-021-00774-x  0.319
2020 Lobel JH, Gross JD. Pat1 increases the range of decay factors and RNA bound by the Lsm1-7 complex. Rna (New York, N.Y.). PMID 32513655 DOI: 10.1261/Rna.075812.120  0.453
2020 Gordon DE, Jang GM, Bouhaddou M, Xu J, Obernier K, O'Meara MJ, Guo JZ, Swaney DL, Tummino TA, Hüttenhain R, Kaake RM, Richards AL, Tutuncuoglu B, Foussard H, Batra J, ... ... Gross J, et al. A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing. Biorxiv : the Preprint Server For Biology. PMID 32511329 DOI: 10.1101/2020.03.22.002386  0.651
2020 Gordon DE, Jang GM, Bouhaddou M, Xu J, Obernier K, White KM, O'Meara MJ, Rezelj VV, Guo JZ, Swaney DL, Tummino TA, Huettenhain R, Kaake RM, Richards AL, Tutuncuoglu B, ... ... Gross JD, et al. A SARS-CoV-2 protein interaction map reveals targets for drug repurposing. Nature. PMID 32353859 DOI: 10.1038/S41586-020-2286-9  0.685
2019 Binning JM, Chesarino NM, Emerman M, Gross JD. Structural Basis for a Species-Specific Determinant of an SIV Vif Protein toward Hominid APOBEC3G Antagonism. Cell Host & Microbe. 26: 739-747.e4. PMID 31830442 DOI: 10.1016/J.Chom.2019.10.014  0.759
2019 Lobel JH, Tibble RW, Gross JD. Pat1 activates late steps in mRNA decay by multiple mechanisms. Proceedings of the National Academy of Sciences of the United States of America. PMID 31690658 DOI: 10.1073/Pnas.1905455116  0.474
2019 Hüttenhain R, Xu J, Burton LA, Gordon DE, Hultquist JF, Johnson JR, Satkamp L, Hiatt J, Rhee DY, Baek K, Crosby DC, Frankel AD, Marson A, Harper JW, Alpi AF, ... ... Gross JD, et al. ARIH2 Is a Vif-Dependent Regulator of CUL5-Mediated APOBEC3G Degradation in HIV Infection. Cell Host & Microbe. PMID 31253590 DOI: 10.1016/J.Chom.2019.05.008  0.312
2019 Ball KA, Chan LM, Stanley DJ, Tierney E, Thapa S, Ta HM, Burton L, Binning JM, Jacobson MP, Gross JD. Conformational Dynamics of the HIV-Vif Protein Complex. Biophysical Journal. PMID 30961890 DOI: 10.1016/J.Bpj.2019.03.014  0.771
2019 Ball KA, Chan LM, Stanley D, Tierney E, Thapa S, Ta HM, Burton L, Binning JM, Jacobson MP, Gross JD. Conformational Flexibility of the HIV VIF Protein Complex Biophysical Journal. 116: 14a. DOI: 10.1016/J.Bpj.2018.11.117  0.746
2018 Mugridge JS, Coller J, Gross JD. Publisher Correction: Structural and molecular mechanisms for the control of eukaryotic 5'-3' mRNA decay. Nature Structural & Molecular Biology. PMID 30575809 DOI: 10.1038/S41594-018-0178-6  0.314
2018 Mugridge JS, Coller J, Gross JD. Structural and molecular mechanisms for the control of eukaryotic 5'-3' mRNA decay. Nature Structural & Molecular Biology. PMID 30518847 DOI: 10.1038/S41594-018-0164-Z  0.38
2018 Mugridge JS, Gross JD. Decapping enzymes STOP "cancer" ribosomes in their tracks. The Embo Journal. PMID 30455174 DOI: 10.15252/Embj.2018100801  0.364
2018 Nayak A, Kim DY, Trnka MJ, Kerr CH, Lidsky PV, Stanley DJ, Rivera BM, Li KH, Burlingame AL, Jan E, Frydman J, Gross JD, Andino R. A Viral Protein Restricts Drosophila RNAi Immunity by Regulating Argonaute Activity and Stability. Cell Host & Microbe. 24: 542-557.e9. PMID 30308158 DOI: 10.1016/J.Chom.2018.09.006  0.369
2018 Chen SH, Jang GM, Hüttenhain R, Gordon DE, Du D, Newton BW, Johnson JR, Hiatt J, Hultquist JF, Johnson TL, Liu YL, Burton LA, Ye J, Reichermeier KM, Stroud RM, ... ... Gross JD, et al. CRL4 targets Elongin C for ubiquitination and degradation to modulate CRL5 signaling. The Embo Journal. PMID 30166453 DOI: 10.15252/Embj.201797508  0.383
2018 Paquette DR, Tibble RW, Daifuku TS, Gross JD. Control of mRNA decapping by autoinhibition. Nucleic Acids Research. PMID 29618050 DOI: 10.1093/Nar/Gky233  0.488
2018 Mugridge JS, Tibble RW, Ziemniak M, Jemielity J, Gross JD. Structure of the activated Edc1-Dcp1-Dcp2-Edc3 mRNA decapping complex with substrate analog poised for catalysis. Nature Communications. 9: 1152. PMID 29559651 DOI: 10.1038/S41467-018-03536-X  0.484
2018 Binning JM, Smith AM, Hultquist JF, Craik CS, Caretta N, Campbell MG, Burton L, La Greca F, McGregor MJ, Ta HM, Bartholomeeusen K, Peterlin BM, Krogan NJ, Sevillano N, Cheng Y, ... Gross JD, et al. Fab-based inhibitors reveal ubiquitin independent functions for HIV Vif neutralization of APOBEC3 restriction factors. Plos Pathogens. 14: e1006830. PMID 29304101 DOI: 10.1371/Journal.Ppat.1006830  0.755
2018 Chan LM, Tierney E, Thapa S, Gross J, Ball K. Conformational Flexibility of HIV-1 Vif in Complex with Recruited Host Cell Proteins Biophysical Journal. 114: 426a-427a. DOI: 10.1016/J.Bpj.2017.11.2365  0.344
2017 Paquette DR, Mugridge JS, Weinberg DE, Gross JD. Application of a Schizosaccharomyces pombe Edc1-fused Dcp1-Dcp2 decapping enzyme for transcription start site mapping. Rna (New York, N.Y.). PMID 29101277 DOI: 10.1261/Rna.062737.117  0.365
2017 Faust TB, Binning JM, Gross JD, Frankel AD. Making Sense of Multifunctional Proteins: Human Immunodeficiency Virus Type 1 Accessory and Regulatory Proteins and Connections to Transcription. Annual Review of Virology. 4: 241-260. PMID 28961413 DOI: 10.1146/Annurev-Virology-101416-041654  0.757
2017 Stefan Isaac R, Sanulli S, Tibble R, Hornsby M, Ravalin M, Craik CS, Gross JD, Narlikar GJ. Biochemical basis for distinct roles of the heterochromatin proteins Swi6 and Chp2. Journal of Molecular Biology. PMID 28942089 DOI: 10.1016/J.Jmb.2017.09.012  0.412
2017 Kim DY, Gross JD. CBFß and HIV Infection. Advances in Experimental Medicine and Biology. 962: 415-431. PMID 28299671 DOI: 10.1007/978-981-10-3233-2_25  0.396
2017 Weinberg DE, Gross JD. Molecular biology: Messenger RNAs marked for longer life. Nature. 541: 293-294. PMID 28002405 DOI: 10.1038/Nature21109  0.375
2017 Ball KA, Gross JD, Jacobson MP. Conformational Flexibility of HIV Vif in Complex with Host Proteins Biophysical Journal. 112: 64a. DOI: 10.1016/J.Bpj.2016.11.384  0.406
2016 Mugridge JS, Ziemniak M, Jemielity J, Gross JD. Structural basis of mRNA-cap recognition by Dcp1-Dcp2. Nature Structural & Molecular Biology. PMID 27694842 DOI: 10.1038/Nsmb.3301  0.509
2016 Ziemniak M, Mugridge JS, Kowalska J, Rhoads RE, Gross JD, Jemielity J. Two-headed tetraphosphate cap analogs are inhibitors of the Dcp1/2 RNA decapping complex. Rna (New York, N.Y.). PMID 26826132 DOI: 10.1261/Rna.055152.115  0.366
2016 Ball KA, Gross J, Jacobson M. Investigating HIV Vif Interactions with Host Proteins Biophysical Journal. 110: 384a. DOI: 10.1016/J.Bpj.2015.11.2074  0.402
2015 Jayaraman B, Mavor D, Gross JD, Frankel AD. Thermodynamics of Rev-RNA Interactions in HIV-1 Rev-RRE Assembly. Biochemistry. 54: 6545-54. PMID 26422686 DOI: 10.1021/Acs.Biochem.5B00876  0.441
2015 Kane JR, Stanley DJ, Hultquist JF, Johnson JR, Mietrach N, Binning JM, Jónsson SR, Barelier S, Newton BW, Johnson TL, Franks-Skiba KE, Li M, Brown WL, Gunnarsson HI, Adalbjornsdóttir A, ... ... Gross JD, et al. Lineage-Specific Viral Hijacking of Non-canonical E3 Ubiquitin Ligase Cofactors in the Evolution of Vif Anti-APOBEC3 Activity. Cell Reports. 11: 1236-50. PMID 25981045 DOI: 10.1016/J.Celrep.2015.04.038  0.765
2014 Ni W, Xu SL, Tepperman JM, Stanley DJ, Maltby DA, Gross JD, Burlingame AL, Wang ZY, Quail PH. A mutually assured destruction mechanism attenuates light signaling in Arabidopsis. Science (New York, N.Y.). 344: 1160-4. PMID 24904166 DOI: 10.1126/Science.1250778  0.326
2013 Aglietti RA, Floor SN, McClendon CL, Jacobson MP, Gross JD. Active site conformational dynamics are coupled to catalysis in the mRNA decapping enzyme Dcp2. Structure (London, England : 1993). 21: 1571-80. PMID 23911090 DOI: 10.1016/J.Str.2013.06.021  0.774
2013 Watson LC, Kuchenbecker KM, Schiller BJ, Gross JD, Pufall MA, Yamamoto KR. The glucocorticoid receptor dimer interface allosterically transmits sequence-specific DNA signals. Nature Structural & Molecular Biology. 20: 876-83. PMID 23728292 DOI: 10.1038/Nsmb.2595  0.349
2013 Mugridge JS, Gross JD. Judge, jury, and executioner: DXO functions as a decapping enzyme and exoribonuclease in pre-mRNA quality control. Molecular Cell. 50: 2-4. PMID 23582258 DOI: 10.1016/J.Molcel.2013.03.025  0.363
2013 Kim DY, Kwon E, Hartley PD, Crosby DC, Mann S, Krogan NJ, Gross JD. CBFβ stabilizes HIV Vif to counteract APOBEC3 at the expense of RUNX1 target gene expression. Molecular Cell. 49: 632-44. PMID 23333304 DOI: 10.1016/J.Molcel.2012.12.012  0.414
2012 Stanley DJ, Bartholomeeusen K, Crosby DC, Kim DY, Kwon E, Yen L, Cartozo NC, Li M, Jäger S, Mason-Herr J, Hayashi F, Yokoyama S, Krogan NJ, Harris RS, Peterlin BM, ... Gross JD, et al. Inhibition of a NEDD8 Cascade Restores Restriction of HIV by APOBEC3G. Plos Pathogens. 8: e1003085. PMID 23300442 DOI: 10.1371/Journal.Ppat.1003085  0.345
2012 Markley JL, Akutsu H, Asakura T, Baldus M, Boelens R, Bonvin A, Kaptein R, Bax A, Bezsonova I, Gryk MR, Hoch JC, Korzhnev DM, Maciejewski MW, Case D, Chazin WJ, ... ... Gross J, et al. In support of the BMRB. Nature Structural & Molecular Biology. 19: 854-60. PMID 22955930 DOI: 10.1038/Nsmb.2371  0.675
2012 Kwon E, Kim DY, Ngo TD, Gross CA, Gross JD, Kim KK. The crystal structure of the periplasmic domain of Vibrio parahaemolyticus CpxA. Protein Science : a Publication of the Protein Society. 21: 1334-43. PMID 22760860 DOI: 10.1002/Pro.2120  0.391
2012 Floor SN, Borja MS, Gross JD. Interdomain dynamics and coactivation of the mRNA decapping enzyme Dcp2 are mediated by a gatekeeper tryptophan Proceedings of the National Academy of Sciences of the United States of America. 109: 2872-2877. PMID 22323607 DOI: 10.1073/Pnas.1113620109  0.789
2012 Jäger S, Kim DY, Hultquist JF, Shindo K, LaRue RS, Kwon E, Li M, Anderson BD, Yen L, Stanley D, Mahon C, Kane J, Franks-Skiba K, Cimermancic P, Burlingame A, ... ... Gross JD, et al. Vif hijacks CBF-β to degrade APOBEC3G and promote HIV-1 infection. Nature. 481: 371-5. PMID 22190037 DOI: 10.1038/Nature10693  0.398
2011 Borja MS, Piotukh K, Freund C, Gross JD. Dcp1 links coactivators of mRNA decapping to Dcp2 by proline recognition Rna. 17: 278-290. PMID 21148770 DOI: 10.1261/Rna.2382011  0.81
2010 Kwon E, Kim DY, Gross CA, Gross JD, Kim KK. The crystal structure Escherichia coli Spy. Protein Science : a Publication of the Protein Society. 19: 2252-9. PMID 20799348 DOI: 10.1002/Pro.489  0.387
2010 Floor SN, Jones BN, Hernandez GA, Gross JD. A split active site couples cap recognition by Dcp2 to activation. Nature Structural & Molecular Biology. 17: 1096-101. PMID 20711189 DOI: 10.1038/Nsmb.1879  0.786
2010 Harigaya Y, Jones BN, Muhlrad D, Gross JD, Parker R. Identification and analysis of the interaction between Edc3 and Dcp2 in Saccharomyces cerevisiae. Molecular and Cellular Biology. 30: 1446-56. PMID 20086104 DOI: 10.1128/Mcb.01305-09  0.804
2009 Harjes E, Gross PJ, Chen KM, Lu Y, Shindo K, Nowarski R, Gross JD, Kotler M, Harris RS, Matsuo H. An extended structure of the APOBEC3G catalytic domain suggests a unique holoenzyme model. Journal of Molecular Biology. 389: 819-32. PMID 19389408 DOI: 10.1016/J.Jmb.2009.04.031  0.355
2008 Neher SB, Bradshaw N, Floor SN, Gross JD, Walter P. SRP RNA controls a conformational switch regulating the SRP-SRP receptor interaction. Nature Structural & Molecular Biology. 15: 916-23. PMID 19172744 DOI: 10.1038/Nsmb.1467  0.707
2008 Jones BN, Quang-Dang DU, Oku Y, Gross JD. A kinetic assay to monitor RNA decapping under single- turnover conditions. Methods in Enzymology. 448: 23-40. PMID 19111169 DOI: 10.1016/S0076-6879(08)02602-5  0.794
2008 Lampe JN, Floor SN, Gross JD, Nishida CR, Jiang Y, Trnka MJ, Ortiz de Montellano PR. Ligand-induced conformational heterogeneity of cytochrome P450 CYP119 identified by 2D NMR spectroscopy with the unnatural amino acid (13)C-p-methoxyphenylalanine. Journal of the American Chemical Society. 130: 16168-9. PMID 18998650 DOI: 10.1021/Ja8071463  0.698
2008 Floor SN, Jones BN, Gross JD. Control of mRNA decapping by Dcp2: An open and shut case? Rna Biology. 5: 189-192. PMID 18971632 DOI: 10.4161/Rna.6859  0.786
2008 Campbell LA, Faivre EJ, Show MD, Ingraham JG, Flinders J, Gross JD, Ingraham HA. Decreased recognition of SUMO-sensitive target genes following modification of SF-1 (NR5A1). Molecular and Cellular Biology. 28: 7476-86. PMID 18838537 DOI: 10.1128/Mcb.00103-08  0.398
2008 Deshmukh MV, Jones BN, Quang-Dang DU, Flinders J, Floor SN, Kim C, Jemielity J, Kalek M, Darzynkiewicz E, Gross JD. mRNA decapping is promoted by an RNA-binding channel in Dcp2. Molecular Cell. 29: 324-36. PMID 18280238 DOI: 10.1016/J.Molcel.2007.11.027  0.792
2007 Deshmukh MV, Oku Y, Gross JD. Backbone and sidechain methyl Ile (delta1), Leu and Val resonance assignments of the catalytic domain of the yeast mRNA decapping enzyme, Dcp2. Biomolecular Nmr Assignments. 1: 17-8. PMID 19636815 DOI: 10.1007/S12104-007-9023-2  0.396
2007 Moerke NJ, Aktas H, Chen H, Cantel S, Reibarkh MY, Fahmy A, Gross JD, Degterev A, Yuan J, Chorev M, Halperin JA, Wagner G. Small-molecule inhibition of the interaction between the translation initiation factors eIF4E and eIF4G. Cell. 128: 257-67. PMID 17254965 DOI: 10.1016/J.Cell.2006.11.046  0.785
2006 von der Haar T, Oku Y, Ptushkina M, Moerke N, Wagner G, Gross JD, McCarthy JE. Folding transitions during assembly of the eukaryotic mRNA cap-binding complex. Journal of Molecular Biology. 356: 982-92. PMID 16405910 DOI: 10.1016/J.Jmb.2005.12.034  0.809
2005 He C, Hus JC, Sun LJ, Zhou P, Norman DP, Dötsch V, Wei H, Gross JD, Lane WS, Wagner G, Verdine GL. A methylation-dependent electrostatic switch controls DNA repair and transcriptional activation by E. coli ada. Molecular Cell. 20: 117-29. PMID 16209950 DOI: 10.1016/J.Molcel.2005.08.013  0.459
2005 He C, Hus J, Sun LJ, Zhou P, Norman D, Doetsch V, Gross J, Lane W, Wagner G, Verdine G. E. Coli Ada in a complex with DNA Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr6605  0.395
2004 Chatwood LL, Müller J, Gross JD, Wagner G, Lippard SJ. NMR structure of the flavin domain from soluble methane monooxygenase reductase from Methylococcus capsulatus (Bath). Biochemistry. 43: 11983-91. PMID 15379538 DOI: 10.1021/Bi049066N  0.645
2004 von der Haar T, Gross JD, Wagner G, McCarthy JE. The mRNA cap-binding protein eIF4E in post-transcriptional gene expression. Nature Structural & Molecular Biology. 11: 503-11. PMID 15164008 DOI: 10.1038/Nsmb779  0.531
2003 Gross JD, Moerke NJ, von der Haar T, Lugovskoy AA, Sachs AB, McCarthy JE, Wagner G. Ribosome loading onto the mRNA cap is driven by conformational coupling between eIF4G and eIF4E. Cell. 115: 739-50. PMID 14675538 DOI: 10.1016/S0092-8674(03)00975-9  0.797
2003 Bennett AE, Gross JD, Wagner G. Broadband 13C-13C adiabatic mixing in solution optimized for high fields. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 165: 59-79. PMID 14568517 DOI: 10.1016/S1090-7807(03)00244-1  0.406
2003 Gross JD, Gelev VM, Wagner G. A sensitive and robust method for obtaining intermolecular NOEs between side chains in large protein complexes. Journal of Biomolecular Nmr. 25: 235-42. PMID 12652135 DOI: 10.1023/A:1022890112109  0.483
2002 Lugovskoy AA, Degterev AI, Fahmy AF, Zhou P, Gross JD, Yuan J, Wagner G. A novel approach for characterizing protein ligand complexes: molecular basis for specificity of small-molecule Bcl-2 inhibitors. Journal of the American Chemical Society. 124: 1234-40. PMID 11841292 DOI: 10.1021/Ja011239Y  0.715
2001 Gross JD, Matsuo H, Fletcher M, Sachs AB, Wagner G. Interactions of the eukaryotic translation initiation factor eIF4E. Cold Spring Harbor Symposia On Quantitative Biology. 66: 397-402. PMID 12762042 DOI: 10.1101/Sqb.2001.66.397  0.478
1999 Hershey PE, McWhirter SM, Gross JD, Wagner G, Alber T, Sachs AB. The Cap-binding protein eIF4E promotes folding of a functional domain of yeast translation initiation factor eIF4G1. The Journal of Biological Chemistry. 274: 21297-304. PMID 10409688 DOI: 10.1074/Jbc.274.30.21297  0.45
1998 Hong M, Gross JD, Hu W, Griffin RG. Determination of the peptide torsion angle phi by 15N chemical shift and 13Calpha-1Halpha dipolar tensor correlation in solid-state MAS NMR. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 135: 169-77. PMID 9799691 DOI: 10.1006/Jmre.1998.1573  0.531
1998 Gross JD, Costa PR, Griffin RG. Tilted n-fold symmetric radio frequency pulse sequences: Applications to CSA and heteronuclear dipolar recoupling in homonuclear dipolar coupled spin networks The Journal of Chemical Physics. 108: 7286-7293. DOI: 10.1063/1.476146  0.439
1998 Warschawski DE, Gross JD, Griffin RG. Effects of membrane peptide dynamics on high-resolution magic-angle spinning NMR Journal De Chimie Physique Et De Physico-Chimie Biologique. 95: 460-466. DOI: 10.1051/Jcp:1998160  0.394
1997 Hong M, Gross JD, Rienstra CM, Griffin RG, Kumashiro KK, Schmidt-Rohr K. Coupling amplification in 2D MAS NMR and its application to torsion angle determination in peptides. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 129: 85-92. PMID 9405219 DOI: 10.1006/Jmre.1997.1242  0.658
1997 Gross JD, Warschawski DE, Griffin RG. Dipolar Recoupling in MAS NMR:  A Probe for Segmental Order in Lipid Bilayers Journal of the American Chemical Society. 119: 796-802. DOI: 10.1021/Ja962951B  0.434
1997 Costa P, Gross J, Hong M, Griffin R. Solid-state NMR measurement of Ψ in peptides: a NCCN 2Q-heteronuclear local field experiment Chemical Physics Letters. 280: 95-103. DOI: 10.1016/S0009-2614(97)01107-X  0.53
1995 Gross JD, Costa PR, Dubacq JP, Warschawski DE, Lirsac PN, Devaux PF, Griffin RG. Multidimensional NMR in lipid systems. Coherence transfer through J couplings under MAS. Journal of Magnetic Resonance. Series B. 106: 187-90. PMID 7850186 DOI: 10.1006/Jmrb.1995.1031  0.415
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