Wacław Szybalski - Related publications

Affiliations: 
Oncology University of Wisconsin, Madison, Madison, WI 
Website:
http://en.wikipedia.org/wiki/Wac%C5%82aw_Szybalski
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Liu J, Liu L, He J, Xu Y, Wang Y. Multi-omic analysis of altered transcriptome and epigenetic signatures in the UV-induced DNA damage response. Dna Repair. 106: 103172. PMID 34298489 DOI: 10.1016/j.dnarep.2021.103172   
2021 Hu W, Wang Y, Yang B, Lin C, Yu H, Liu G, Deng Z, Ou HY, He X. Bacterial YedK represses plasmid DNA replication and transformation through its DNA single-strand binding activity. Microbiological Research. 252: 126852. PMID 34454309 DOI: 10.1016/j.micres.2021.126852   
2021 Pausch P, Soczek KM, Herbst DA, Tsuchida CA, Al-Shayeb B, Banfield JF, Nogales E, Doudna JA. DNA interference states of the hypercompact CRISPR-CasΦ effector. Nature Structural & Molecular Biology. 28: 652-661. PMID 34381246 DOI: 10.1038/s41594-021-00632-3   
2021 Lee KZ, Mechikoff MA, Kikla A, Liu A, Pandolfi P, Fitzgerald K, Gimble FS, Solomon KV. NgAgo possesses guided DNA nicking activity. Nucleic Acids Research. PMID 34478558 DOI: 10.1093/nar/gkab757   
2021 Han P, Ma Y, Fu Z, Guo Z, Xie J, Wu Y, Yuan YJ. A DNA Inversion System in Eukaryotes Established via Laboratory Evolution. Acs Synthetic Biology. PMID 34420293 DOI: 10.1021/acssynbio.1c00132   
2021 Dhar GA, Saha S, Mitra P, Nag Chaudhuri R. DNA methylation and regulation of gene expression: Guardian of our health. The Nucleus : An International Journal of Cytology and Allied Topics. 1-12. PMID 34421129 DOI: 10.1007/s13237-021-00367-y   
2021 Xiao R, Wang S, Han R, Li Z, Gabel C, Mukherjee IA, Chang L. Structural basis of target DNA recognition by CRISPR-Cas12k for RNA-guided DNA transposition. Molecular Cell. PMID 34450043 DOI: 10.1016/j.molcel.2021.07.043   
2021 Zannoni A, Pelliciari S, Musiani F, Chiappori F, Roncarati D, Scarlato V. Definition of the Binding Architecture to a Target Promoter of HP1043, the Essential Master Regulator of . International Journal of Molecular Sciences. 22. PMID 34360614 DOI: 10.3390/ijms22157848   
2021 Tse DH, Becker NA, Young RT, Olson WK, Peters JP, Schwab TL, Clark KJ, Maher LJ. Designed architectural proteins that tune DNA looping in bacteria. Nucleic Acids Research. PMID 34478548 DOI: 10.1093/nar/gkab759   
2021 Anton BP, Roberts RJ. Beyond Restriction Modification: Epigenomic Roles of DNA Methylation in Prokaryotes. Annual Review of Microbiology. PMID 34314594 DOI: 10.1146/annurev-micro-040521-035040   
2021 Yoshua SB, Watson GD, Howard JAL, Velasco-Berrelleza V, Leake MC, Noy A. Integration host factor bends and bridges DNA in a multiplicity of binding modes with varying specificity. Nucleic Acids Research. PMID 34352078 DOI: 10.1093/nar/gkab641   
2021 Zhao F, Kim W, Gao H, Liu C, Zhang Y, Chen Y, Deng M, Zhou Q, Huang J, Hu Q, Chen SH, Nowsheen S, Kloeber JA, Qin B, Yin P, et al. ASTE1 promotes shieldin-complex-mediated DNA repair by attenuating end resection. Nature Cell Biology. PMID 34354233 DOI: 10.1038/s41556-021-00723-9   
2021 Wang Q, Xu J, Pu X, Lv H, Liu Y, Ma H, Wu F, Wang Q, Feng X, Liu T, Tang Q, Liu Y, Lu Y. Maize DNA Methylation in Response to Drought Stress Is Involved in Target Gene Expression and Alternative Splicing. International Journal of Molecular Sciences. 22. PMID 34361051 DOI: 10.3390/ijms22158285   
2021 Bai L, Yang G, Qin Z, Lyu J, Wang Y, Feng J, Liu M, Gong T, Li X, Li Z, Li J, Qin J, Yang W, Ding C. Proteome-Wide Profiling of Readers for DNA Modification. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2101426. PMID 34351703 DOI: 10.1002/advs.202101426   
2021 Branzei D, Szakal B. DNA helicases in homologous recombination repair. Current Opinion in Genetics & Development. 71: 27-33. PMID 34271541 DOI: 10.1016/j.gde.2021.06.009   
2021 Pandya N, Bhagwat SR, Kumar A. Regulatory role of Non-canonical DNA Polymorphisms in human genome and their relevance in Cancer. Biochimica Et Biophysica Acta. Reviews On Cancer. 1876: 188594. PMID 34303788 DOI: 10.1016/j.bbcan.2021.188594   
2021 Yao X, Bierbach U. DNA Adduct Detection after Post-Labeling Technique with PCR Amplification (DNA-ADAPT-qPCR) Identifies the Pre-Ribosomal RNA Gene as a Direct Target of Platinum-Acridine Anticancer Agents. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 34375484 DOI: 10.1002/chem.202102263   
2021 Sarkar S, Dey U, Khohliwe TB, Yella VR, Kumar A. Analysis of nucleoid-associated protein-binding regions reveals DNA structural features influencing genome organization in Mycobacterium tuberculosis. Febs Letters. PMID 34387867 DOI: 10.1002/1873-3468.14178   
2021 de Martin X, Sodaei R, Santpere G. Mechanisms of Binding Specificity among bHLH Transcription Factors. International Journal of Molecular Sciences. 22. PMID 34502060 DOI: 10.3390/ijms22179150   
2021 Smith EM, Mondragón A. Basic residues at the C-gate of DNA gyrase are involved in DNA supercoiling. The Journal of Biological Chemistry. 101000. PMID 34303706 DOI: 10.1016/j.jbc.2021.101000   
2021 Smith EM, Mondragón A. Basic residues at the C-gate of DNA gyrase are involved in DNA supercoiling. The Journal of Biological Chemistry. 101000. PMID 34303706 DOI: 10.1016/j.jbc.2021.101000   
2021 Green MR, Sambrook J. A Guide to Cloning the Products of Polymerase Chain Reactions. Cold Spring Harbor Protocols. 2021: pdb.top101345. PMID 34470865 DOI: 10.1101/pdb.top101345   
2021 Ogunbunmi ET, Roznowski AP, Fane BA. The Effects of Packaged, but Misguided, Single-Stranded DNA Genomes Are Transmitted to the Outer Surface of the øX174 Capsid. Journal of Virology. JVI0088321. PMID 34232738 DOI: 10.1128/JVI.00883-21   
2021 Yang T, Liu X, Kumar SK, Jin F, Dai Y. Decoding DNA methylation in epigenetics of multiple myeloma. Blood Reviews. 100872. PMID 34384602 DOI: 10.1016/j.blre.2021.100872   
2021 Polleys EJ, Freudenreich CH. Homologous recombination within repetitive DNA. Current Opinion in Genetics & Development. 71: 143-153. PMID 34464817 DOI: 10.1016/j.gde.2021.08.005   
2021 Carlier F, Nguyen TS, Mazur AK, Gladyshev E. Modulation of C-to-T mutation by recombination-independent pairing of closely-positioned DNA repeats. Biophysical Journal. PMID 34509507 DOI: 10.1016/j.bpj.2021.09.014   
2021 Fujita T, Nagata S, Fujii H. Protein or ribonucleoprotein-mediated blocking of recombinase polymerase amplification enables the discrimination of nucleotide and epigenetic differences between cell populations. Communications Biology. 4: 988. PMID 34413466 DOI: 10.1038/s42003-021-02503-5   
2021 Xuan J, Gitareja K, Brajanovski N, Sanij E. Harnessing the Nucleolar DNA Damage Response in Cancer Therapy. Genes. 12. PMID 34440328 DOI: 10.3390/genes12081156   
2021 Serrano-Chacón I, Mir B, Escaja N, González C. Structure of i-Motif/Duplex Junctions at Neutral pH. Journal of the American Chemical Society. PMID 34370473 DOI: 10.1021/jacs.1c04679   
2021 Kemiha S, Poli J, Lin YL, Lengronne A, Pasero P. Toxic R-loops: Cause or consequence of replication stress? Dna Repair. 107: 103199. PMID 34399314 DOI: 10.1016/j.dnarep.2021.103199   
2021 Brugger C, Deaconescu AM. A Gel-Based Assay for Probing Protein Translocation on dsDNA. Bio-Protocol. 11: e4094. PMID 34395731 DOI: 10.21769/BioProtoc.4094   
2021 St Germain C, Zhao H, Barlow JH. Transcription-Replication Collisions-A Series of Unfortunate Events. Biomolecules. 11. PMID 34439915 DOI: 10.3390/biom11081249   
2021 He Z, Tong Z, Tan B, He X, Zhang T, Guo Y, Jin L, He N, Li S, Chen Z. Rapid Detection of DNA Methylation with a Novel Real-Time Fluorescence Recombinase-Aided Amplification Assay. Journal of Biomedical Nanotechnology. 17: 1364-1370. PMID 34446139 DOI: 10.1166/jbn.2021.3111   
2021 Nagarajan H, Vetrivel U. Deciphering the structural and functional impact of missense mutations in Egr1-DNA interacting interface: an integrative computational approach. Journal of Biomolecular Structure & Dynamics. 1-13. PMID 34402752 DOI: 10.1080/07391102.2021.1965030   
2021 Wang J. Genome Analysis of Programmed DNA Elimination in Parasitic Nematodes. Methods in Molecular Biology (Clifton, N.J.). 2369: 251-261. PMID 34313993 DOI: 10.1007/978-1-0716-1681-9_14   
2021 Kropp HM, Ludmann S, Diederichs K, Betz K, Marx A. Structural Basis for The Recognition of Deaminated Nucleobases by An Archaeal DNA Polymerase. Chembiochem : a European Journal of Chemical Biology. PMID 34486208 DOI: 10.1002/cbic.202100306   
2021 Wang H, Xu S. Something old, something new, a DNA preparation procedure for long read genomic sequencing. Genome. PMID 34314646 DOI: 10.1139/gen-2021-0029   
2021 Wang H, Xu S. Something old, something new, a DNA preparation procedure for long read genomic sequencing. Genome. PMID 34314646 DOI: 10.1139/gen-2021-0029   
2021 Fan H, Huang LY, Tong X, Yang LJ, Shi JJ, Jiao J, Xu HQ, Li YC, Wang DY. A competitive PCR-based method to detect a single copy of T-DNA insertion in transformants. Physiologia Plantarum. PMID 34310717 DOI: 10.1111/ppl.13513   
2021 Fan H, Huang LY, Tong X, Yang LJ, Shi JJ, Jiao J, Xu HQ, Li YC, Wang DY. A competitive PCR-based method to detect a single copy of T-DNA insertion in transformants. Physiologia Plantarum. PMID 34310717 DOI: 10.1111/ppl.13513   
2021 Jia W, Kim SH, Scalf MA, Tonzi P, Millikin RJ, Guns WM, Liu L, Mastrocola AS, Smith LM, Huang TT, Tibbetts RS. Fused in sarcoma (FUS) regulates DNA replication timing and kinetics. The Journal of Biological Chemistry. 101049. PMID 34375640 DOI: 10.1016/j.jbc.2021.101049   
2021 Backer AS, King GA, Biebricher AS, Shepherd JW, Noy A, Leake MC, Heller I, Wuite GJL, Peterman EJG. Elucidating the Role of Topological Constraint on the Structure of Overstretched DNA Using Fluorescence Polarization Microscopy. The Journal of Physical Chemistry. B. PMID 34309392 DOI: 10.1021/acs.jpcb.1c02708   
2021 Backer AS, King GA, Biebricher AS, Shepherd JW, Noy A, Leake MC, Heller I, Wuite GJL, Peterman EJG. Elucidating the Role of Topological Constraint on the Structure of Overstretched DNA Using Fluorescence Polarization Microscopy. The Journal of Physical Chemistry. B. PMID 34309392 DOI: 10.1021/acs.jpcb.1c02708   
2021 Marín DV, Castillo DK, López-Lavalle LAB, Chalarca JR, Pérez CR. An optimized high-quality DNA isolation protocol for J. E. smith (Lepidoptera: Noctuidae). Methodsx. 8: 101255. PMID 34434778 DOI: 10.1016/j.mex.2021.101255   
2021 Wong YC, Osahor A, Al-Ajli FOM, Narayanan K. Large BACs transfect more efficiently in circular topology. Analytical Biochemistry. 114324. PMID 34363787 DOI: 10.1016/j.ab.2021.114324   
2021 Rahmat RA, Humphries MA, Linacre AMT, Malik A, Saedon NA, Austin JJ. Freeze-drying improves DNA yield from teeth. Forensic Science International. 326: 110938. PMID 34343942 DOI: 10.1016/j.forsciint.2021.110938   
2021 Spencer DM, Reyna AG, Pisetsky DS. The Binding of Monoclonal and Polyclonal Anti-Z-DNA Antibodies to DNA of Various Species Origin. International Journal of Molecular Sciences. 22. PMID 34445637 DOI: 10.3390/ijms22168931   
2021 Dai Y, Yuan BF, Feng YQ. Quantification and mapping of DNA modifications. Rsc Chemical Biology. 2: 1096-1114. PMID 34458826 DOI: 10.1039/d1cb00022e   
2021 Kang K, Ma Y, Sadakane K. Direct visualization of local activities of long DNA strands via image-time correlation. European Biophysics Journal : Ebj. PMID 34499211 DOI: 10.1007/s00249-021-01570-0   
2021 Ueno H, Sawada H, Soga N, Sano M, Nara S, Tabata KV, Su'etsugu M, Noji H. Amplification of over 100 kbp DNA from Single Template Molecules in Femtoliter Droplets. Acs Synthetic Biology. PMID 34406762 DOI: 10.1021/acssynbio.0c00584