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John W. Sedat - Publications

Affiliations: 
Biochemistry & Biophysics University of California, San Francisco, San Francisco, CA 
Area:
Nuclear Architecture and Chromosome Organization
Website:
http://msg.ucsf.edu/sedat/

151 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2013 Arigovindan M, Fung JC, Elnatan D, Mennella V, Chan YH, Pollard M, Branlund E, Sedat JW, Agard DA. High-resolution restoration of 3D structures from widefield images with extreme low signal-to-noise-ratio. Proceedings of the National Academy of Sciences of the United States of America. 110: 17344-9. PMID 24106307 DOI: 10.1073/pnas.1315675110  1
2012 Nora EP, Lajoie BR, Schulz EG, Giorgetti L, Okamoto I, Servant N, Piolot T, Van Berkum NL, Meisig J, Sedat J, Gribnau J, Barillot E, Blüthgen N, Dekker J, Heard E. Spatial partitioning of the regulatory landscape of the X-inactivation centre Nature. 485: 381-385. PMID 22495304 DOI: 10.1038/nature11049  1
2012 Shao L, Winoto L, Agard DA, Gustafsson MG, Sedat JW. Interferometer-based structured-illumination microscopy utilizing complementary phase relationship through constructive and destructive image detection by two cameras. Journal of Microscopy. 246: 229-36. PMID 22472010 DOI: 10.1111/j.1365-2818.2012.03604.x  1
2012 Arigovindan M, Sedat JW, Agard DA. Effect of depth dependent spherical aberrations in 3D structured illumination microscopy. Optics Express. 20: 6527-41. PMID 22418536 DOI: 10.1364/OE.20.006527  1
2011 Dobbie IM, King E, Parton RM, Carlton PM, Sedat JW, Swedlow JR, Davis I. OMX: a new platform for multimodal, multichannel wide-field imaging. Cold Spring Harbor Protocols. 2011: 899-909. PMID 21807861 DOI: 10.1101/pdb.top121  1
2011 Zheng SQ, Branlund E, Kesthelyi B, Braunfeld MB, Cheng Y, Sedat JW, Agard DA. A distributed multi-GPU system for high speed electron microscopic tomographic reconstruction. Ultramicroscopy. 111: 1137-43. PMID 21741915 DOI: 10.1016/j.ultramic.2011.03.015  1
2011 Strukov YG, Sural TH, Kuroda MI, Sedat JW. Evidence of activity-specific, radial organization of mitotic chromosomes in Drosophila. Plos Biology. 9: e1000574. PMID 21264350 DOI: 10.1371/journal.pbio.1000574  1
2011 Kner P, Kam Z, Agard D, Sedat J. Adaptive optics in wide-field microscopy Proceedings of Spie - the International Society For Optical Engineering. 7931. DOI: 10.1117/12.876500  1
2010 Kner P, Winoto L, Agard DA, Sedat JW. Closed loop adaptive optics for microscopy without a wavefront sensor. Proceedings of Spie--the International Society For Optical Engineering. 7570. PMID 24392198 DOI: 10.1117/12.840943  1
2010 Zheng SQ, Sedat JW, Agard DA. Automated data collection for electron microscopic tomography. Methods in Enzymology. 481: 283-315. PMID 20887862 DOI: 10.1016/S0076-6879(10)81012-2  1
2010 Matsuda A, Shao L, Boulanger J, Kervrann C, Carlton PM, Kner P, Agard D, Sedat JW. Condensed mitotic chromosome structure at nanometer resolution using PALM and EGFP- histones. Plos One. 5: e12768. PMID 20856676 DOI: 10.1371/journal.pone.0012768  1
2010 Carlton PM, Boulanger J, Kervrann C, Sibarita JB, Salamero J, Gordon-Messer S, Bressan D, Haber JE, Haase S, Shao L, Winoto L, Matsuda A, Kner P, Uzawa S, Gustafsson M, ... ... Sedat JW, et al. Fast live simultaneous multiwavelength four-dimensional optical microscopy. Proceedings of the National Academy of Sciences of the United States of America. 107: 16016-22. PMID 20705899 DOI: 10.1073/pnas.1004037107  1
2010 Arigovindan M, Shaevitz J, McGowan J, Sedat JW, Agard DA. A Parallel Product-Convolution approach for representing the depth varying Point Spread Functions in 3D widefield microscopy based on principal component analysis. Optics Express. 18: 6461-76. PMID 20389670 DOI: 10.1364/OE.18.006461  1
2010 Xu W, Xu F, Jones M, Keszthelyi B, Sedat J, Agard D, Mueller K. High-performance iterative electron tomography reconstruction with long-object compensation using graphics processing units (GPUs). Journal of Structural Biology. 171: 142-53. PMID 20371381 DOI: 10.1016/j.jsb.2010.03.018  1
2010 Kner P, Sedat JW, Agard DA, Kam Z. High-resolution wide-field microscopy with adaptive optics for spherical aberration correction and motionless focusing. Journal of Microscopy. 237: 136-47. PMID 20096044 DOI: 10.1111/j.1365-2818.2009.03315.x  1
2010 Xu F, Xu W, Jones M, Keszthelyi B, Sedat J, Agard D, Mueller K. On the efficiency of iterative ordered subset reconstruction algorithms for acceleration on GPUs. Computer Methods and Programs in Biomedicine. 98: 261-70. PMID 19850372 DOI: 10.1016/j.cmpb.2009.09.003  1
2010 Hanssen E, Carlton P, Deed S, Klonis N, Sedat J, DeRisi J, Tilley L. Whole cell imaging reveals novel modular features of the exomembrane system of the malaria parasite, Plasmodium falciparum. International Journal For Parasitology. 40: 123-34. PMID 19766648 DOI: 10.1016/j.ijpara.2009.09.004  1
2009 Zheng SQ, Matsuda A, Braunfeld MB, Sedat JW, Agard DA. Dual-axis target mapping and automated sequential acquisition of dual-axis EM tomographic data. Journal of Structural Biology. 168: 323-31. PMID 19545637 DOI: 10.1016/j.jsb.2009.06.010  1
2009 Hanssen E, Knoechel C, Carlton P, Sedat J, Larabell C, Tilley L. Whole cell imaging of plasmodium falciparum blood stages Microscopy and Microanalysis. 15: 866-867. DOI: 10.1017/S143192760909268X  1
2008 Wang X, Kam Z, Carlton PM, Xu L, Sedat JW, Blackburn EH. Rapid telomere motions in live human cells analyzed by highly time-resolved microscopy. Epigenetics & Chromatin. 1: 4. PMID 19014413 DOI: 10.1186/1756-8935-1-4  0.84
2008 Schermelleh L, Carlton PM, Haase S, Shao L, Winoto L, Kner P, Burke B, Cardoso MC, Agard DA, Gustafsson MG, Leonhardt H, Sedat JW. Subdiffraction multicolor imaging of the nuclear periphery with 3D structured illumination microscopy. Science (New York, N.Y.). 320: 1332-6. PMID 18535242 DOI: 10.1126/science.1156947  1
2008 Chang HH, Falick AM, Carlton PM, Sedat JW, DeRisi JL, Marletta MA. N-terminal processing of proteins exported by malaria parasites. Molecular and Biochemical Parasitology. 160: 107-15. PMID 18534695 DOI: 10.1016/j.molbiopara.2008.04.011  1
2008 Pielage J, Cheng L, Fetter RD, Carlton PM, Sedat JW, Davis GW. A presynaptic giant ankyrin stabilizes the NMJ through regulation of presynaptic microtubules and transsynaptic cell adhesion. Neuron. 58: 195-209. PMID 18439405 DOI: 10.1016/j.neuron.2008.02.017  1
2008 Gustafsson MG, Shao L, Carlton PM, Wang CJ, Golubovskaya IN, Cande WZ, Agard DA, Sedat JW. Three-dimensional resolution doubling in wide-field fluorescence microscopy by structured illumination. Biophysical Journal. 94: 4957-70. PMID 18326650 DOI: 10.1529/biophysj.107.120345  1
2008 Shao L, Isaac B, Uzawa S, Agard DA, Sedat JW, Gustafsson MG. I5S: wide-field light microscopy with 100-nm-scale resolution in three dimensions. Biophysical Journal. 94: 4971-83. PMID 18326649 DOI: 10.1529/biophysj.107.120352  1
2008 Kner P, Sedat J, Agard D, Kam Z. Applying adaptive optics to three-dimensional wide-field microscopy Proceedings of Spie - the International Society For Optical Engineering. 6888. DOI: 10.1117/12.773731  1
2008 Zheng SQ, Braunfeld MB, Sedat JW, Agard DA. Serial acquisition of dual axis EM tomographic data Microscopy and Microanalysis. 14: 1320-1321. DOI: 10.1017/S1431927608083530  1
2007 Hom EF, Marchis F, Lee TK, Haase S, Agard DA, Sedat JW. AIDA: an adaptive image deconvolution algorithm with application to multi-frame and three-dimensional data. Journal of the Optical Society of America. a, Optics, Image Science, and Vision. 24: 1580-600. PMID 17491626 DOI: 10.1364/JOSAA.24.001580  1
2007 Kam Z, Kner P, Agard D, Sedat JW. Modelling the application of adaptive optics to wide-field microscope live imaging. Journal of Microscopy. 226: 33-42. PMID 17381707 DOI: 10.1111/j.1365-2818.2007.01751.x  1
2007 Krug R, Carballido-Gamio J, Burghardt AJ, Haase S, Sedat JW, Moss WC, Majumdar S. Wavelet-based characterization of vertebral trabecular bone structure from magnetic resonance images at 3 T compared with micro-computed tomographic measurements. Magnetic Resonance Imaging. 25: 392-8. PMID 17371730 DOI: 10.1016/j.mri.2006.09.020  1
2007 König P, Braunfeld MB, Sedat JW, Agard DA. The three-dimensional structure of in vitro reconstituted Xenopus laevis chromosomes by EM tomography. Chromosoma. 116: 349-72. PMID 17333236 DOI: 10.1007/s00412-007-0101-0  1
2007 Zheng SQ, Kollman JM, Braunfeld MB, Sedat JW, Agard DA. Automated acquisition of electron microscopic random conical tilt sets. Journal of Structural Biology. 157: 148-55. PMID 17169745 DOI: 10.1016/j.jsb.2006.10.026  1
2007 Zheng SQ, Keszthelyi B, Branlund E, Lyle JM, Braunfeld MB, Sedat JW, Agard DA. UCSF tomography: an integrated software suite for real-time electron microscopic tomographic data collection, alignment, and reconstruction. Journal of Structural Biology. 157: 138-47. PMID 16904341 DOI: 10.1016/j.jsb.2006.06.005  1
2007 Moss WC, Haase S, Lyle JM, Agard DA, Sedat JW. Reply to letter to the editor Journal of Microscopy. 225: 108. DOI: 10.1111/j.1365-2818.2007.01734.x  1
2006 Vazquez J, Müller M, Pirrotta V, Sedat JW. The Mcp element mediates stable long-range chromosome-chromosome interactions in Drosophila. Molecular Biology of the Cell. 17: 2158-65. PMID 16495335 DOI: 10.1091/mbc.E06-01-0049  1
2006 Zheng SQ, Braunfeld MB, Keszthelyi B, Branlund E, Kollman JM, Sedat JW, Agard DA. Automated acquisition of tomographic and random conical tilt series and real-time reconstruction using UCSF tmography Microscopy and Microanalysis. 12: 88-89. DOI: 10.1017/S1431927606065871  1
2005 Moss WC, Haase S, Lyle JM, Agard DA, Sedat JW. A novel 3D wavelet-based filter for visualizing features in noisy biological data. Journal of Microscopy. 219: 43-9. PMID 16159339 DOI: 10.1111/j.1365-2818.2005.01492.x  1
2005 Harmon B, Sedat J. Cell-by-cell dissection of gene expression and chromosomal interactions reveals consequences of nuclear reorganization Plos Biology.. 3: e67. PMID 15737020 DOI: 10.1371/journal.pbio.0030067  1
2005 Krug R, Carballido-Gamio J, Burghardt A, Haase S, Sedat JW, Moss WC, Majumdar S. Wavelet based characterization of vertebral trabecular bone structure from MR images of specimen at 3 tesla compared to MicroCT measurements Annual International Conference of the Ieee Engineering in Medicine and Biology - Proceedings. 7: 7040-7043.  1
2004 Lowenstein MG, Goddard TD, Sedat JW. Long-range interphase chromosome organization in Drosophila: a study using color barcoded fluorescence in situ hybridization and structural clustering analysis. Molecular Biology of the Cell. 15: 5678-92. PMID 15371546 DOI: 10.1091/mbc.E04-04-0289  1
2004 Hanser BM, Gustafsson MG, Agard DA, Sedat JW. Phase-retrieved pupil functions in wide-field fluorescence microscopy. Journal of Microscopy. 216: 32-48. PMID 15369481 DOI: 10.1111/j.0022-2720.2004.01393.x  1
2004 Zheng QS, Braunfeld MB, Sedat JW, Agard DA. An improved strategy for automated electron microscopic tomography. Journal of Structural Biology. 147: 91-101. PMID 15193638 DOI: 10.1016/j.jsb.2004.02.005  1
2004 Bailey B, Agard DA, Sedat JW, Barfels M, Chao H, Mooney PE. Performance evaluation of a transmission scintillator-based lens-coupled 4K CCD camera for use in low-dose electron cryo-microscopy Microscopy and Microanalysis. 10: 1204-1205. DOI: 10.1017/S1431927604886458  1
2004 Gustafsson MGL, Shao L, Agard DA, Sedat JW. Fluorescence microscopy without resolution limit Leos Summer Topical Meeting. 25-26.  1
2003 Hanser BM, Gustafsson MG, Agard DA, Sedat JW. Phase retrieval for high-numerical-aperture optical systems. Optics Letters. 28: 801-3. PMID 12779151  1
2002 Vazquez J, Belmont AS, Sedat JW. The dynamics of homologous chromosome pairing during male Drosophila meiosis. Current Biology : Cb. 12: 1473-83. PMID 12225662 DOI: 10.1016/S0960-9822(02)01090-4  1
2002 Hanser BM, Gustafsson MGL, Agard DA, Sedat JW. Application of phase retrieved pupil functions in wide-field fluorescence microscopy Proceedings of Spie - the International Society For Optical Engineering. 4621: 40-46. DOI: 10.1117/12.467844  1
2001 Vazquez J, Belmont AS, Sedat JW. Multiple regimes of constrained chromosome motion are regulated in the interphase Drosophila nucleus. Current Biology : Cb. 11: 1227-39. PMID 11525737 DOI: 10.1016/S0960-9822(01)00390-6  1
2001 Marshall WF, Marko JF, Agard DA, Sedat JW. Chromosome elasticity and mitotic polar ejection force measured in living Drosophila embryos by four-dimensional microscopy-based motion analysis. Current Biology : Cb. 11: 569-78. PMID 11369201 DOI: 10.1016/S0960-9822(01)00180-4  1
2001 Grogan JL, Mohrs M, Harmon B, Lacy DA, Sedat JW, Locksley RM. Early transcription and silencing of cytokine genes underlie polarization of T helper cell subsets. Immunity. 14: 205-15. PMID 11290331 DOI: 10.1016/S1074-7613(01)00103-0  1
2001 Kam Z, Hanser B, Gustafsson MG, Agard DA, Sedat JW. Computational adaptive optics for live three-dimensional biological imaging. Proceedings of the National Academy of Sciences of the United States of America. 98: 3790-5. PMID 11274396 DOI: 10.1073/pnas.071275698  1
2001 Hanser BM, Gustafsson MGL, Agard DA, Sedat JW. Phase retrieval of widefield microscopy point spread functions Proceedings of Spie - the International Society For Optical Engineering. 4261: 60-68. DOI: 10.1117/12.424520  1
2000 Bass HW, Riera-Lizarazu O, Ananiev EV, Bordoli SJ, Rines HW, Phillips RL, Sedat JW, Agard DA, Cande WZ. Evidence for the coincident initiation of homolog pairing and synapsis during the telomere-clustering (bouquet) stage of meiotic prophase. Journal of Cell Science. 113: 1033-42. PMID 10683151  1
2000 Servant G, Weiner OD, Herzmark P, Balla T, Sedat JW, Bourne HR. Polarization of chemoattractant receptor signaling during neutrophil chemotaxis. Science (New York, N.Y.). 287: 1037-40. PMID 10669415 DOI: 10.1126/science.287.5455.1037  1
2000 Gustafsson MGL, Agard DA, Sedat JW. Doubling the lateral resolution of wide-field fluorescence microscopy using structured illumination Proceedings of Spie - the International Society For Optical Engineering. 3919: 141-150.  1
1999 Kalman D, Weiner OD, Goosney DL, Sedat JW, Finlay BB, Abo A, Bishop JM. Enteropathogenic E. coli acts through WASP and Arp2/3 complex to form actin pedestals. Nature Cell Biology. 1: 389-91. PMID 10559969 DOI: 10.1038/14087  1
1999 Weiner OD, Servant G, Welch MD, Mitchison TJ, Sedat JW, Bourne HR. Spatial control of actin polymerization during neutrophil chemotaxis. Nature Cell Biology. 1: 75-81. PMID 10559877 DOI: 10.1038/10042  1
1999 Gustafsson MG, Agard DA, Sedat JW. I5M: 3D widefield light microscopy with better than 100 nm axial resolution. Journal of Microscopy. 195: 10-6. PMID 10444297 DOI: 10.1046/j.1365-2818.1999.00576.x  1
1999 Marshall WF, Sedat JW. Nuclear architecture. Results and Problems in Cell Differentiation. 25: 283-301. PMID 10339752  1
1999 Servant G, Weiner OD, Neptune ER, Sedat JW, Bourne HR. Dynamics of a chemoattractant receptor in living neutrophils during chemotaxis. Molecular Biology of the Cell. 10: 1163-78. PMID 10198064  1
1998 Straight AF, Sedat JW, Murray AW. Time-lapse microscopy reveals unique roles for kinesins during anaphase in budding yeast. The Journal of Cell Biology. 143: 687-94. PMID 9813090 DOI: 10.1083/jcb.143.3.687  1
1998 Fung JC, Marshall WF, Dernburg A, Agard DA, Sedat JW. Homologous chromosome pairing in Drosophila melanogaster proceeds through multiple independent initiations. The Journal of Cell Biology. 141: 5-20. PMID 9531544 DOI: 10.1083/jcb.141.1.5  1
1998 Dernburg AF, Sedat JW. Mapping three-dimensional chromosome architecture in situ. Methods in Cell Biology. 53: 187-233. PMID 9348510  1
1997 Han KF, Sedat JW, Agard DA. Practical image restoration of thick biological specimens using multiple focus levels in transmission electron microscopy. Journal of Structural Biology. 120: 237-44. PMID 9441929 DOI: 10.1006/jsbi.1997.3914  1
1997 Marshall WF, Straight A, Marko JF, Swedlow J, Dernburg A, Belmont A, Murray AW, Agard DA, Sedat JW. Interphase chromosomes undergo constrained diffusional motion in living cells. Current Biology : Cb. 7: 930-9. PMID 9382846  1
1997 Oegema K, Marshall WF, Sedat JW, Alberts BM. Two proteins that cycle asynchronously between centrosomes and nuclear structures: Drosophila CP60 and CP190. Journal of Cell Science. 110: 1573-83. PMID 9247191  1
1997 Nunnari J, Marshall WF, Straight A, Murray A, Sedat JW, Walter P. Mitochondrial transmission during mating in Saccharomyces cerevisiae is determined by mitochondrial fusion and fission and the intramitochondrial segregation of mitochondrial DNA. Molecular Biology of the Cell. 8: 1233-42. PMID 9243504  1
1997 Straight AF, Marshall WF, Sedat JW, Murray AW. Mitosis in living budding yeast: anaphase A but no metaphase plate. Science (New York, N.Y.). 277: 574-8. PMID 9228009 DOI: 10.1126/science.277.5325.574  1
1997 Marshall WF, Fung JC, Sedat JW. Deconstructing the nucleus: global architecture from local interactions. Current Opinion in Genetics & Development. 7: 259-63. PMID 9115425 DOI: 10.1016/S0959-437X(97)80136-0  1
1997 Bass HW, Marshall WF, Sedat JW, Agard DA, Cande WZ. Telomeres cluster de novo before the initiation of synapsis: a three-dimensional spatial analysis of telomere positions before and during meiotic prophase. The Journal of Cell Biology. 137: 5-18. PMID 9105032 DOI: 10.1083/jcb.137.1.5  1
1997 Kirk KE, Harmon BP, Reichardt IK, Sedat JW, Blackburn EH. Block in anaphase chromosome separation caused by a telomerase template mutation. Science (New York, N.Y.). 275: 1478-81. PMID 9045613 DOI: 10.1126/science.275.5305.1478  1
1997 Hiraoka Y, Agard DA, Sedat JW. Spatial arrangement of homologous chromosomes during anaphase in early embryos of Drosophila melanogaster studied by three-dimensional fluorescence microscopy Bioimaging. 5: 183-193. DOI: 10.1002/1361-6374(199712)5:4<183::AID-BIO2>3.0.CO;2-A  1
1997 Kam Z, Agard DA, Sedat JW. Three-dimensional microscopy in thick biological samples: A fresh approach for adjusting focus and correcting spherical aberration Bioimaging. 5: 40-49. DOI: 10.1002/1361-6374(199703)5:1<40::AID-BIO4>3.0.CO;2-W  1
1997 Fung JC, Kane L, Smith SD, Sedat JW, Agard DA, Spontak RJ. Phase behavior of complex diblock copolymer blends: A transmission electron microscopy study Materials Science Forum. 239: 179-184.  1
1997 Laurer JH, Hajduk DA, Fung JC, Sedat JW, Smith SD, Gruner SM, Agard DA, Spontak RJ. Microstructural analysis of a cubic bicontinuous morphology in a neat SIS triblock copolymer Macromolecules. 30: 3938-3941.  1
1997 Laurer JH, Fung JC, Sedat JW, Smith SD, Samseth J, Mortensen K, Agard DA, Spontak RJ. From micelles to randomly connected, bilayered membranes in dilute block copolymer blends Langmuir. 13: 2177-2180.  1
1996 Paddy MR, Saumweber H, Agard DA, Sedat JW. Time-resolved, in vivo studies of mitotic spindle formation and nuclear lamina breakdown in Drosophila early embryos. Journal of Cell Science. 109: 591-607. PMID 8907705  1
1996 Dernburg AF, Daily DR, Yook KJ, Corbin JA, Sedat JW, Sullivan W. Selective loss of sperm bearing a compound chromosome in the Drosophila female. Genetics. 143: 1629-42. PMID 8844151  1
1996 Han KF, Gubbens AJ, Sedat JW, Agard DA. Optimal strategies for imaging thick biological specimens: exit wavefront reconstruction and energy-filtered imaging. Journal of Microscopy. 183: 124-32. PMID 8805824  1
1996 Marshall WF, Dernburg AF, Harmon B, Agard DA, Sedat JW. Specific interactions of chromatin with the nuclear envelope: positional determination within the nucleus in Drosophila melanogaster. Molecular Biology of the Cell. 7: 825-42. PMID 8744953  1
1996 Fung JC, Liu W, de Ruijter WJ, Chen H, Abbey CK, Sedat JW, Agard DA. Toward fully automated high-resolution electron tomography. Journal of Structural Biology. 116: 181-9. PMID 8742742 DOI: 10.1006/jsbi.1996.0029  1
1996 Chen H, Hughes DD, Chan TA, Sedat JW, Agard DA. IVE (Image Visualization Environment): a software platform for all three-dimensional microscopy applications. Journal of Structural Biology. 116: 56-60. PMID 8742723 DOI: 10.1006/jsbi.1996.0010  1
1996 Dernburg AF, Sedat JW, Hawley RS. Direct evidence of a role for heterochromatin in meiotic chromosome segregation. Cell. 86: 135-46. PMID 8689681 DOI: 10.1016/S0092-8674(00)80084-7  1
1996 Dernburg AF, Broman KW, Fung JC, Marshall WF, Philips J, Agard DA, Sedat JW. Perturbation of nuclear architecture by long-distance chromosome interactions. Cell. 85: 745-59. PMID 8646782 DOI: 10.1016/S0092-8674(00)81240-4  1
1996 Scalettar BA, Swedlow JR, Sedat JW, Agard DA. Dispersion, aberration and deconvolution in multi-wavelength fluorescence images. Journal of Microscopy. 182: 50-60. PMID 8632447  1
1996 Spontak RJ, Fung JC, Braunfeld MB, Sedat JW, Agard DA, Kane L, Smith SD, Satkowski MM, Ashraf A, Hajduk DA, Grüner SM. Phase behavior of ordered diblock copolymer blends: Effect of compositional heterogeneity Macromolecules. 29: 4494-4507.  1
1996 Spontak RJ, Fung JC, Braunfeld MB, Sedat JW, Agard DA, Ashraf A, Smith SD. Architecture-induced phase immiscibility in a diblock/multiblock copolymer blend Macromolecules. 29: 2850-2856.  1
1996 Marshall WF, Agard DA, Sedat JW. Chromosome mechanics in vivo: quantitative analysis of nonrigid 3D chromosome motion in Drosophila embryos Proceedings of Spie - the International Society For Optical Engineering. 2678: 142-150.  1
1996 Gustafsson MG, Agard DA, Sedat JW. 3D widefield microscopy with two objective lenses: experimental verification of improved axial resolution Proceedings of Spie - the International Society For Optical Engineering. 2655: 62-66.  1
1995 Moritz M, Braunfeld MB, Sedat JW, Alberts B, Agard DA. Microtubule nucleation by gamma-tubulin-containing rings in the centrosome. Nature. 378: 638-40. PMID 8524401 DOI: 10.1038/378638a0  1
1995 Han KF, Sedat JW, Agard DA. Mechanism of image formation for thick biological specimens: exit wavefront reconstruction and electron energy-loss spectroscopic imaging. Journal of Microscopy. 178: 107-19. PMID 7783184  1
1995 Moritz M, Braunfeld MB, Fung JC, Sedat JW, Alberts BM, Agard DA. Three-dimensional structural characterization of centrosomes from early Drosophila embryos. The Journal of Cell Biology. 130: 1149-59. PMID 7657699 DOI: 10.1083/jcb.130.5.1149  1
1995 Urata Y, Parmelee SJ, Agard DA, Sedat JW. A three-dimensional structural dissection of Drosophila polytene chromosomes. The Journal of Cell Biology. 131: 279-95. PMID 7593159 DOI: 10.1083/jcb.131.2.279  1
1995 Marshall WF, Agard DA, Sedat JW. Quantitative analysis of chromosome motion in Drosophila melanogaster Proceedings of Spie - the International Society For Optical Engineering. 2412: 33-42.  1
1995 Gustafsson MG, Agard DA, Sedat JW. Sevenfold improvement of axial resolution in 3D wide-field microscopy using two objective-lenses Proceedings of Spie - the International Society For Optical Engineering. 2412: 147-156.  1
1994 Horowitz RA, Agard DA, Sedat JW, Woodcock CL. The three-dimensional architecture of chromatin in situ: electron tomography reveals fibers composed of a continuously variable zig-zag nucleosomal ribbon. The Journal of Cell Biology. 125: 1-10. PMID 8138564  1
1994 Dawe RK, Sedat JW, Agard DA, Cande WZ. Meiotic chromosome pairing in maize is associated with a novel chromatin organization. Cell. 76: 901-12. PMID 8124724 DOI: 10.1016/0092-8674(94)90364-6  1
1994 Braunfeld MB, Koster AJ, Sedat JW, Agard DA. Cryo automated electron tomography: towards high-resolution reconstructions of plastic-embedded structures. Journal of Microscopy. 174: 75-84. PMID 8051698  1
1994 Braunfeld MB, Moritz M, Alberts BM, Sedat JW, Agard DA. Three-dimensional reconstruction of isolated centrosomes by automated electron tomography Proceedings - Annual Meeting, Microscopy Society of America. 310-311.  1
1994 Marshall W, Agard D, Sedat J. Algorithm for estimation of chromosome motion in four-dimensional microscopic images Proceedings - Annual Meeting, Microscopy Society of America. 930-931.  1
1994 Liu W, Fung J, Abbey C, Sedat JW, Agard DA. Automatic/interactive bead alignment in electron tomographic image processing Proceedings - Annual Meeting, Microscopy Society of America. 932-933.  1
1994 Han KF, Sedat JW, Agard DA. Image restoration of thick biological specimens using a through focus series as applied to electron tomography Proceedings - Annual Meeting, Microscopy Society of America. 338-339.  1
1994 Liu W, Sedat JW, Agard DA. EMCAT: An automatic image-processing system for electron microscopic tomography Proceedings - Annual Meeting, Microscopy Society of America. 418-419.  1
1993 Hiraoka Y, Dernburg AF, Parmelee SJ, Rykowski MC, Agard DA, Sedat JW. The onset of homologous chromosome pairing during Drosophila melanogaster embryogenesis. The Journal of Cell Biology. 120: 591-600. PMID 8425892  1
1993 Swedlow JR, Sedat JW, Agard DA. Multiple chromosomal populations of topoisomerase II detected in vivo by time-lapse, three-dimensional wide-field microscopy. Cell. 73: 97-108. PMID 8384932 DOI: 10.1016/0092-8674(93)90163-K  1
1993 Swedlow JR, Agard DA, Sedat JW. Chromosome structure inside the nucleus. Current Opinion in Cell Biology. 5: 412-6. PMID 8352957 DOI: 10.1016/0955-0674(93)90005-B  1
1993 Braunfeld MB, Koster AJ, Sedat JW, Agard DA. Properties and dose dependence of embedding media for cryo-automated electron tomography Proceedings - Annual Meeting, Microscopy Society of America. 436-437.  1
1993 Koster AJ, Chen H, Clyborne W, Sedat JW, Agard DA. Design and performance of instrumentation for automated single-tilt-axis electron tomography Proceedings - Annual Meeting, Microscopy Society of America. 448-449.  1
1992 Koster AJ, Chen H, Sedat JW, Agard DA. Automated microscopy for electron tomography. Ultramicroscopy. 46: 207-27. PMID 1481272 DOI: 10.1016/0304-3991(92)90016-D  1
1992 Paddy MR, Agard DA, Sedat JW. An extended view of nuclear lamin structure, function, and dynamics. Seminars in Cell Biology. 3: 255-66. PMID 1421171 DOI: 10.1016/1043-4682(92)90027-S  1
1991 Kam Z, Minden JS, Agard DA, Sedat JW, Leptin M. Drosophila gastrulation: analysis of cell shape changes in living embryos by three-dimensional fluorescence microscopy. Development (Cambridge, England). 112: 365-70. PMID 1794308  1
1991 Hiraoka Y, Swedlow JR, Paddy MR, Agard DA, Sedat JW. Three-dimensional multiple-wavelength fluorescence microscopy for the structural analysis of biological phenomena. Seminars in Cell Biology. 2: 153-65. PMID 1720334  1
1991 Paddy MR, Swedlow JR, Hiraoka Y, Sedat JW, Agard DA. Time-resolved, multi-wavelength 3-D fluorescence microscopy of nuclear structures Scanning. 13: I2.  1
1990 Hiraoka Y, Sedat JW, Agard DA. Determination of three-dimensional imaging properties of a light microscope system. Partial confocal behavior in epifluorescence microscopy. Biophysical Journal. 57: 325-33. PMID 2317554 DOI: 10.1016/S0006-3495(90)82534-0  1
1990 Paddy MR, Belmont AS, Saumweber H, Agard DA, Sedat JW. Interphase nuclear envelope lamins form a discontinuous network that interacts with only a fraction of the chromatin in the nuclear periphery. Cell. 62: 89-106. PMID 2194675 DOI: 10.1016/0092-8674(90)90243-8  1
1990 Hiraoka Y, Agard DA, Sedat JW. Temporal and spatial coordination of chromosome movement, spindle formation, and nuclear envelope breakdown during prometaphase in Drosophila melanogaster embryos. The Journal of Cell Biology. 111: 2815-28. PMID 2125300  1
1990 Koshy M, Agard DA, Sedat JW. Solution of Toeplitz systems for the restoration of 3-D optical sectioning microscopy data Proceedings of Spie - the International Society For Optical Engineering. 1205: 64-71.  1
1989 Aikens RS, Agard DA, Sedat JW. Solid-state imagers for microscopy. Methods in Cell Biology. 29: 291-313. PMID 2643764  1
1989 Hiraoka Y, Minden JS, Swedlow JR, Sedat JW, Agard DA. Focal points for chromosome condensation and decondensation revealed by three-dimensional in vivo time-lapse microscopy. Nature. 342: 293-6. PMID 2509947 DOI: 10.1038/342293a0  1
1989 Minden JS, Agard DA, Sedat JW, Alberts BM. Direct cell lineage analysis in Drosophila melanogaster by time-lapse, three-dimensional optical microscopy of living embryos. The Journal of Cell Biology. 109: 505-16. PMID 2503522  1
1989 Mathog D, Sedat JW. The three-dimensional organization of polytene nuclei in male Drosophila melanogaster with compound XY or ring X chromosomes. Genetics. 121: 293-311. PMID 2499510  1
1989 Shaw PJ, Agard DA, Hiraoka Y, Sedat JW. Tilted view reconstruction in optical microscopy. Three-dimensional reconstruction of Drosophila melanogaster embryo nuclei. Biophysical Journal. 55: 101-10. PMID 2495031 DOI: 10.1016/S0006-3495(89)82783-3  1
1989 Agard DA, Hiraoka Y, Shaw P, Sedat JW. Fluorescence microscopy in three dimensions. Methods in Cell Biology. 30: 353-77. PMID 2494418  1
1989 Belmont AS, Braunfeld MB, Sedat JW, Agard DA. Large-scale chromatin structural domains within mitotic and interphase chromosomes in vivo and in vitro. Chromosoma. 98: 129-43. PMID 2476279 DOI: 10.1007/BF00291049  1
1989 Chen H, Sedat JW, Agard DA. Software and hardware for 3-d gray level image analysis and quantization Proceedings of Spie - the International Society For Optical Engineering. 1161: 31-41. DOI: 10.1117/12.962685  1
1989 Agard DA, Hiraoka Y, Sedat JW. Three-dimensional microscopy: Image processing for high resolution subcellular imaging Proceedings of Spie - the International Society For Optical Engineering. 1161: 24-30. DOI: 10.1117/12.962684  1
1989 Agard DA, Hiraoka Y, Shaw P, Sedat JW. Chapter 13 Fluorescence Microscopy in Three Dimensions Methods in Cell Biology. 30: 353-374,374a,375-377. DOI: 10.1016/S0091-679X(08)60986-3  1
1988 Agard DA, Hiraoka Y, Sedat JW. Three-dimensional light microscopy of diploid Drosophila chromosomes. Cell Motility and the Cytoskeleton. 10: 18-27. PMID 3141069 DOI: 10.1002/cm.970100106  1
1988 Rykowski MC, Parmelee SJ, Agard DA, Sedat JW. Precise determination of the molecular limits of a polytene chromosome band: regulatory sequences for the Notch gene are in the interband. Cell. 54: 461-72. PMID 3135939 DOI: 10.1016/0092-8674(88)90067-0  1
1988 Gruenbaum Y, Landesman Y, Drees B, Bare JW, Saumweber H, Paddy MR, Sedat JW, Smith DE, Benton BM, Fisher PA. Drosophila nuclear lamin precursor Dm0 is translated from either of two developmentally regulated mRNA species apparently encoded by a single gene. The Journal of Cell Biology. 106: 585-96. PMID 3126192  1
1987 Hiraoka Y, Sedat JW, Agard DA. The use of a charge-coupled device for quantitative optical microscopy of biological structures. Science (New York, N.Y.). 238: 36-41. PMID 3116667  1
1987 Belmont AS, Sedat JW, Agard DA. A three-dimensional approach to mitotic chromosome structure: evidence for a complex hierarchical organization. The Journal of Cell Biology. 105: 77-92. PMID 3112167  1
1987 Hochstrasser M, Sedat JW. Three-dimensional organization of Drosophila melanogaster interphase nuclei. II. Chromosome spatial organization and gene regulation. The Journal of Cell Biology. 104: 1471-83. PMID 3108265  1
1987 Hochstrasser M, Sedat JW. Three-dimensional organization of Drosophila melanogaster interphase nuclei. I. Tissue-specific aspects of polytene nuclear architecture. The Journal of Cell Biology. 104: 1455-70. PMID 3108264  1
1986 Hochstrasser M, Mathog D, Gruenbaum Y, Saumweber H, Sedat JW. Spatial organization of chromosomes in the salivary gland nuclei of Drosophila melanogaster. The Journal of Cell Biology. 102: 112-23. PMID 3079766 DOI: 10.1083/jcb.102.1.112  1
1985 Mathog D, Hochstrasser M, Sedat JW. Light microscope based analysis of three-dimensional structure: applications to the study of Drosophila salivary gland nuclei. I. Data collection and analysis. Journal of Microscopy. 137: 241-52. PMID 3999131  1
1984 Gruenbaum Y, Hochstrasser M, Mathog D, Saumweber H, Agard DA, Sedat JW. Spatial organization of the Drosophila nucleus: a three-dimensional cytogenetic study. Journal of Cell Science. Supplement. 1: 223-34. PMID 6442295  1
1984 Dequin R, Saumweber H, Sedat JW. Proteins shifting from the cytoplasm into the nuclei during early embryogenesis of Drosophila melanogaster. Developmental Biology. 104: 37-48. PMID 6428951 DOI: 10.1016/0012-1606(84)90034-4  1
1983 Agard DA, Sedat JW. Three-dimensional architecture of a polytene nucleus. Nature. 302: 676-81. PMID 6403872  1
1982 Giloh H, Sedat JW. Fluorescence microscopy: reduced photobleaching of rhodamine and fluorescein protein conjugates by n-propyl gallate. Science (New York, N.Y.). 217: 1252-5. PMID 7112126  1
1982 Mortin LI, Sedat JW. Structure of Drosophila polytene chromosomes. Evidence for a toroidal organization of the bands. Journal of Cell Science. 57: 73-113. PMID 6818236  1
1982 Kuo CH, Gilon H, Blumenthal AB, Sedat JW. A library of monoclonal antibodies to nuclear proteins from Drosophila melanogaster embryos. Characterization by a cultured cell assay. Experimental Cell Research. 142: 141-54. PMID 6814937 DOI: 10.1016/0014-4827(82)90418-9  1
1980 Agard DA, Sedat JW. Three-dimensional analysis of biological specimens utilizing image processing techniques Proceedings of Spie - the International Society For Optical Engineering. 264: 110-117. DOI: 10.1117/12.959792  1
1979 Blumenthal AB, Dieden JD, Kapp LN, Sedat JW. Rapid isolation of metaphase chromosomes containing high molecular weight DNA. The Journal of Cell Biology. 81: 255-9. PMID 39081  1
1976 Air GM, Blackburn EH, Coulson AR, Galibert F, Sanger F, Sedat JW, Ziff EB. Gene F of bacteriophage phiX174. Correlation of nucleotide sequences from the DNA and amino acid sequences from the gene product. Journal of Molecular Biology. 107: 445-58. PMID 1088826 DOI: 10.1016/S0022-2836(76)80077-0  1
1973 Razin A, Sedat JW, Sinsheimer RL. In vivo methylation of replicating bacteriophage phi chi174 DNA. Journal of Molecular Biology. 78: 417-25. PMID 4585324 DOI: 10.1016/0022-2836(73)90465-8  1
1973 Ziff EB, Sedat JW, Galibert F. Determination of the nucleotide sequence of a fragment of bacteriophage phiX 174 DNA. Nature: New Biology. 241: 34-7. PMID 4349156  1
1970 Razin A, Sedat JW, Sinsheimer RL. Structure of the DNA of bacteriophage phiX174. VII. Methylation. Journal of Molecular Biology. 53: 251-9. PMID 5493279 DOI: 10.1016/0022-2836(70)90298-6  1
1967 Sedat JW, Kelly RB, Sinsheimer RL. Fractionation of nucleic acid on benzoylated-naphthoylated DEAE cellulose. Journal of Molecular Biology. 26: 537-40. PMID 5339798  1
1965 SEDAT JW, HALL JB. GRAMICIDIN S MESSENGER RNA. II. PHYSICAL AND CHEMICAL PROPERTIES. Journal of Molecular Biology. 12: 174-82. PMID 14343276  1
1965 HALL JB, SEDAT JW, ADIGA PR, UEMURA I, WINNICK T. GRAMICIDIN S MESSENGER RNA. I. ISOLATION AND CHARACTERIZATION. Journal of Molecular Biology. 12: 162-73. PMID 14343275  1
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