Brandt Eichman, Ph.D. - Publications

Biochemistry Vanderbilt University, Nashville, TN 
DNA replication

49 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Meyer PA, Socias S, Key J, Ransey E, Tjon EC, Buschiazzo A, Lei M, Botka C, Withrow J, Neau D, Rajashankar K, Anderson KS, Baxter RH, Blacklow SC, Boggon TJ, ... ... Eichman BF, et al. Data publication with the structural biology data grid supports live analysis. Nature Communications. 7: 10882. PMID 26947396 DOI: 10.1038/ncomms10882  0.8
2016 Badu-Nkansah A, Mason AC, Eichman BF, Cortez D. Identification of a Substrate Recognition Domain in the Replication Stress Response Protein Zinc Finger Ran-binding Domain Containing Protein 3 (ZRANB3). The Journal of Biological Chemistry. PMID 26884333 DOI: 10.1074/jbc.M115.709733  0.8
2015 Mullins EA, Shi R, Parsons ZD, Yuen PK, David SS, Igarashi Y, Eichman BF. The DNA glycosylase AlkD uses a non-base-flipping mechanism to excise bulky lesions. Nature. PMID 26524531 DOI: 10.1038/nature15728  0.8
2015 Kile AC, Chavez DA, Bacal J, Eldirany S, Korzhnev DM, Bezsonova I, Eichman BF, Cimprich KA. HLTF's Ancient HIRAN Domain Binds 3' DNA Ends to Drive Replication Fork Reversal. Molecular Cell. 58: 1090-100. PMID 26051180 DOI: 10.1016/j.molcel.2015.05.013  0.8
2015 Mullins EA, Shi R, Kotsch LA, Eichman BF. A New Family of HEAT-Like Repeat Proteins Lacking a Critical Substrate Recognition Motif Present in Related DNA Glycosylases. Plos One. 10: e0127733. PMID 25978435 DOI: 10.1371/journal.pone.0127733  0.8
2015 Szulik MW, Pallan PS, Nocek B, Voehler M, Banerjee S, Brooks S, Joachimiak A, Egli M, Eichman BF, Stone MP. Differential stabilities and sequence-dependent base pair opening dynamics of Watson-Crick base pairs with 5-hydroxymethylcytosine, 5-formylcytosine, or 5-carboxylcytosine. Biochemistry. 54: 1294-305. PMID 25632825 DOI: 10.1021/bi501534x  0.8
2014 Mason AC, Rambo RP, Greer B, Pritchett M, Tainer JA, Cortez D, Eichman BF. A structure-specific nucleic acid-binding domain conserved among DNA repair proteins. Proceedings of the National Academy of Sciences of the United States of America. 111: 7618-23. PMID 24821763 DOI: 10.1073/pnas.1324143111  0.8
2014 Feldkamp MD, Mason AC, Eichman BF, Chazin WJ. Structural analysis of replication protein A recruitment of the DNA damage response protein SMARCAL1. Biochemistry. 53: 3052-61. PMID 24730652 DOI: 10.1021/bi500252w  0.8
2014 Troll CJ, Adhikary S, Cueff M, Mitra I, Eichman BF, Camps M. Interplay between base excision repair activity and toxicity of 3-methyladenine DNA glycosylases in an E. coli complementation system. Mutation Research. 763: 64-73. PMID 24709477 DOI: 10.1016/j.mrfmmm.2014.03.007  0.8
2014 Brooks SC, Fischer RL, Huh JH, Eichman BF. 5-methylcytosine recognition by Arabidopsis thaliana DNA glycosylases DEMETER and DML3. Biochemistry. 53: 2525-32. PMID 24678721 DOI: 10.1021/bi5002294  0.8
2014 Jang H, Shin H, Eichman BF, Huh JH. Excision of 5-hydroxymethylcytosine by DEMETER family DNA glycosylases. Biochemical and Biophysical Research Communications. 446: 1067-72. PMID 24661881 DOI: 10.1016/j.bbrc.2014.03.060  0.8
2014 Mullins EA, Rubinson EH, Eichman BF. The substrate binding interface of alkylpurine DNA glycosylase AlkD. Dna Repair. 13: 50-4. PMID 24286669 DOI: 10.1016/j.dnarep.2013.10.009  0.8
2014 Vaithiyalingam S, Arnett DR, Aggarwal A, Eichman BF, Fanning E, Chazin WJ. Insights into eukaryotic primer synthesis from structures of the p48 subunit of human DNA primase. Journal of Molecular Biology. 426: 558-69. PMID 24239947 DOI: 10.1016/j.jmb.2013.11.007  0.8
2014 Storm M, Eichman B, Orban C, Jiang S, Fiksel G, Stoeckl C, Dyer G, Ditmire T, Stephens R, Theobald W, Delettrez JA, Freeman RR, Akli K. Kα x-ray imaging of laser-irradiated, limited-mass zirconium foils Physics of Plasmas. 21. DOI: 10.1063/1.4889881  0.8
2013 Storm M, Eichman B, Zhong Z, Theobald W, Schiebel P, Mileham C, Stoeckl C, Begishev IA, Fiksel G, Stephens RB, Freeman RR, Akli KU. Note: Characterization of a high-photon-energy X-ray imager. The Review of Scientific Instruments. 84: 106103. PMID 24182176 DOI: 10.1063/1.4825139  0.8
2013 Rubinson EH, Christov PP, Eichman BF. Depurination of N7-methylguanine by DNA glycosylase AlkD is dependent on the DNA backbone. Biochemistry. 52: 7363-5. PMID 24090276 DOI: 10.1021/bi401195r  0.8
2013 Du W, Josephrajan A, Adhikary S, Bowles T, Bielinsky AK, Eichman BF. Mcm10 self-association is mediated by an N-terminal coiled-coil domain. Plos One. 8: e70518. PMID 23894664 DOI: 10.1371/journal.pone.0070518  0.8
2013 Mullins EA, Rubinson EH, Pereira KN, Calcutt MW, Christov PP, Eichman BF. An HPLC-tandem mass spectrometry method for simultaneous detection of alkylated base excision repair products. Methods (San Diego, Calif.). 64: 59-66. PMID 23876937 DOI: 10.1016/j.ymeth.2013.07.020  0.8
2013 Bétous R, Couch FB, Mason AC, Eichman BF, Manosas M, Cortez D. Substrate-selective repair and restart of replication forks by DNA translocases. Cell Reports. 3: 1958-69. PMID 23746452 DOI: 10.1016/j.celrep.2013.05.002  0.8
2013 Adhikary S, Cato MC, McGary KL, Rokas A, Eichman BF. Non-productive DNA damage binding by DNA glycosylase-like protein Mag2 from Schizosaccharomyces pombe. Dna Repair. 12: 196-204. PMID 23273506 DOI: 10.1016/j.dnarep.2012.12.001  0.8
2013 Brooks SC, Adhikary S, Rubinson EH, Eichman BF. Recent advances in the structural mechanisms of DNA glycosylases. Biochimica Et Biophysica Acta. 1834: 247-71. PMID 23076011 DOI: 10.1016/j.bbapap.2012.10.005  0.8
2012 Du W, Stauffer ME, Eichman BF. Structural biology of replication initiation factor Mcm10. Sub-Cellular Biochemistry. 62: 197-216. PMID 22918587 DOI: 10.1007/978-94-007-4572-8_11  0.8
2012 Shi M, Pedchenko V, Greer BH, Van Horn WD, Santoro SA, Sanders CR, Hudson BG, Eichman BF, Zent R, Pozzi A. Enhancing integrin α1 inserted (I) domain affinity to ligand potentiates integrin α1β1-mediated down-regulation of collagen synthesis. The Journal of Biological Chemistry. 287: 35139-52. PMID 22888006 DOI: 10.1074/jbc.M112.358648  0.8
2012 Bétous R, Mason AC, Rambo RP, Bansbach CE, Badu-Nkansah A, Sirbu BM, Eichman BF, Cortez D. SMARCAL1 catalyzes fork regression and Holliday junction migration to maintain genome stability during DNA replication. Genes & Development. 26: 151-62. PMID 22279047 DOI: 10.1101/gad.178459.111  0.8
2012 Rubinson EH, Eichman BF. Nucleic acid recognition by tandem helical repeats. Current Opinion in Structural Biology. 22: 101-9. PMID 22154606 DOI: 10.1016/  0.8
2011 Camps M, Eichman BF. Unraveling a connection between DNA demethylation repair and cancer. Molecular Cell. 44: 343-4. PMID 22055180 DOI: 10.1016/j.molcel.2011.10.009  0.8
2011 Adhikary S, Eichman BF. Analysis of substrate specificity of Schizosaccharomyces pombe Mag1 alkylpurine DNA glycosylase. Embo Reports. 12: 1286-92. PMID 21960007 DOI: 10.1038/embor.2011.189  0.8
2010 Mok YG, Uzawa R, Lee J, Weiner GM, Eichman BF, Fischer RL, Huh JH. Domain structure of the DEMETER 5-methylcytosine DNA glycosylase. Proceedings of the National Academy of Sciences of the United States of America. 107: 19225-30. PMID 20974931 DOI: 10.1073/pnas.1014348107  0.8
2010 Rubinson EH, Gowda AS, Spratt TE, Gold B, Eichman BF. An unprecedented nucleic acid capture mechanism for excision of DNA damage. Nature. 468: 406-11. PMID 20927102 DOI: 10.1038/nature09428  0.8
2010 Vaithiyalingam S, Warren EM, Eichman BF, Chazin WJ. Insights into eukaryotic DNA priming from the structure and functional interactions of the 4Fe-4S cluster domain of human DNA primase. Proceedings of the National Academy of Sciences of the United States of America. 107: 13684-9. PMID 20643958 DOI: 10.1073/pnas.1002009107  0.8
2010 Robertson PD, Chagot B, Chazin WJ, Eichman BF. Solution NMR structure of the C-terminal DNA binding domain of Mcm10 reveals a conserved MCM motif. The Journal of Biological Chemistry. 285: 22942-9. PMID 20489205 DOI: 10.1074/jbc.M110.131276  0.8
2010 Theobald W, Ovchinnikov V, Ivancic S, Eichman B, Nilson PM, Delettrez JA, Yan R, Li G, Marshall FJ, Meyerhofer DD, Myatt JF, Ren C, Sangster TC, Stoeckl C, Zuegel JD, et al. High-intensity laser-plasma interaction with wedge-shaped-cavity targets Physics of Plasmas. 17. DOI: 10.1063/1.3484217  0.8
2010 Rubinson EH, Adhikary S, Eichman BF. Structural studies of alkylpurine DNA glycosylases Acs Symposium Series. 1041: 29-45. DOI: 10.1021/bk-2010-1041.ch003  0.8
2009 Warren EM, Huang H, Fanning E, Chazin WJ, Eichman BF. Physical interactions between Mcm10, DNA, and DNA polymerase alpha. The Journal of Biological Chemistry. 284: 24662-72. PMID 19608746 DOI: 10.1074/jbc.M109.020438  0.8
2008 Warren EM, Vaithiyalingam S, Haworth J, Greer B, Bielinsky AK, Chazin WJ, Eichman BF. Structural basis for DNA binding by replication initiator Mcm10. Structure (London, England : 1993). 16: 1892-901. PMID 19081065 DOI: 10.1016/j.str.2008.10.005  0.8
2008 Bowles T, Metz AH, O'Quin J, Wawrzak Z, Eichman BF. Structure and DNA binding of alkylation response protein AidB. Proceedings of the National Academy of Sciences of the United States of America. 105: 15299-304. PMID 18829440 DOI: 10.1073/pnas.0806521105  0.8
2008 Rubinson EH, Metz AH, O'Quin J, Eichman BF. A new protein architecture for processing alkylation damaged DNA: the crystal structure of DNA glycosylase AlkD. Journal of Molecular Biology. 381: 13-23. PMID 18585735 DOI: 10.1016/j.jmb.2008.05.078  0.8
2008 Robertson PD, Warren EM, Zhang H, Friedman DB, Lary JW, Cole JL, Tutter AV, Walter JC, Fanning E, Eichman BF. Domain architecture and biochemical characterization of vertebrate Mcm10. The Journal of Biological Chemistry. 283: 3338-48. PMID 18065420 DOI: 10.1074/jbc.M706267200  0.8
2007 Metz AH, Hollis T, Eichman BF. DNA damage recognition and repair by 3-methyladenine DNA glycosylase I (TAG). The Embo Journal. 26: 2411-20. PMID 17410210 DOI: 10.1038/sj.emboj.7601649  0.8
2004 Eichman BF, Fanning E. The power of pumping together; deconstructing the engine of a DNA replication machine. Cell. 119: 3-4. PMID 15454074 DOI: 10.1016/j.cell.2004.09.023  0.8
2004 Brieba LG, Eichman BF, Kokoska RJ, Doublié S, Kunkel TA, Ellenberger T. Structural basis for the dual coding potential of 8-oxoguanosine by a high-fidelity DNA polymerase. The Embo Journal. 23: 3452-61. PMID 15297882 DOI: 10.1038/sj.emboj.7600354  0.8
2003 Eichman BF, O'Rourke EJ, Radicella JP, Ellenberger T. Crystal structures of 3-methyladenine DNA glycosylase MagIII and the recognition of alkylated bases. The Embo Journal. 22: 4898-909. PMID 14517230 DOI: 10.1093/emboj/cdg505  0.8
2002 Eichman BF, Ortiz-Lombardía M, Aymamí J, Coll M, Ho PS. The inherent properties of DNA four-way junctions: comparing the crystal structures of holliday junctions. Journal of Molecular Biology. 320: 1037-51. PMID 12126623 DOI: 10.1016/S0022-2836(02)00540-5  0.8
2001 Ho PS, Eichman BF. The crystal structures of DNA Holliday junctions. Current Opinion in Structural Biology. 11: 302-8. PMID 11406378 DOI: 10.1016/S0959-440X(00)00219-0  0.8
2001 Eichman BF, Mooers BH, Alberti M, Hearst JE, Ho PS. The crystal structures of psoralen cross-linked DNAs: drug-dependent formation of Holliday junctions. Journal of Molecular Biology. 308: 15-26. PMID 11302703 DOI: 10.1006/jmbi.2001.4567  0.8
2000 Vargason JM, Eichman BF, Ho PS. The extended and eccentric E-DNA structure induced by cytosine methylation or bromination. Nature Structural Biology. 7: 758-61. PMID 10966645 DOI: 10.1038/78985  0.8
2000 Eichman BF, Vargason JM, Mooers BH, Ho PS. The Holliday junction in an inverted repeat DNA sequence: sequence effects on the structure of four-way junctions. Proceedings of the National Academy of Sciences of the United States of America. 97: 3971-6. PMID 10760268 DOI: 10.1073/pnas.97.8.3971  0.8
1999 Eichman BF, Schroth GP, Basham BE, Ho PS. The intrinsic structure and stability of out-of-alternation base pairs in Z-DNA. Nucleic Acids Research. 27: 543-50. PMID 9862978 DOI: 10.1093/nar/27.2.543  0.8
1997 Mooers BH, Eichman BF, Ho PS. The structures and relative stabilities of d(G x G) reverse Hoogsteen, d(G x T) reverse wobble, and d(G x C) reverse Watson-Crick base-pairs in DNA crystals. Journal of Molecular Biology. 269: 796-810. PMID 9223642 DOI: 10.1006/jmbi.1997.1100  0.8
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