Matthew R. Jones, Ph.D. - Publications

2007-2014 Materials Science and Engineering Northwestern University, Evanston, IL 
 2014-2017 Chemistry University of California, Berkeley, Berkeley, CA 
 2017- Chemistry Rice University, Houston, TX 
Nanoscience, Self-Assembly, Non-equilibrium Materials, Plasmonics

119 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Odom CV, Kim Y, Burgess CL, Baird LA, Korkmaz FT, Na E, Shenoy AT, Arafa EI, Lam TT, Jones MR, Mizgerd JP, Traber KE, Quinton LJ. Liver-Dependent Lung Remodeling during Systemic Inflammation Shapes Responses to Secondary Infection. Journal of Immunology (Baltimore, Md. : 1950). PMID 34470857 DOI: 10.4049/jimmunol.2100254  1
2021 Barker KA, Etesami NS, Shenoy AT, Arafa EI, de Ana CL, Smith NM, Martin IM, Goltry WN, Barron AM, Browning JL, Kathuria H, Belkina AC, Guillon A, Zhong X, Crossland NA, ... Jones MR, et al. Lung-resident memory B cells protect against bacterial pneumonia. The Journal of Clinical Investigation. 131. PMID 34060477 DOI: 10.1172/JCI141810  1
2021 Schweizer RM, Jones MR, Bradburd GS, Storz JF, Senner NR, Wolf C, Cheviron ZA. Broad concordance in the spatial distribution of adaptive and neutral genetic variation across an elevational gradient in deer mice. Molecular Biology and Evolution. PMID 34037784 DOI: 10.1093/molbev/msab161  1
2020 Jones MR, Chong L, Bellusci S. Fgf10/Fgfr2b Signaling Orchestrates the Symphony of Molecular, Cellular, and Physical Processes Required for Harmonious Airway Branching Morphogenesis. Frontiers in Cell and Developmental Biology. 8: 620667. PMID 33511132 DOI: 10.3389/fcell.2020.620667  1
2020 Rehn SM, Gerrard-Anderson TM, Qiao L, Zhu Q, Wehmeyer G, Jones MR. Mechanical Reshaping of Inorganic Nanostructures with Weak Nanoscale Forces. Nano Letters. PMID 33301332 DOI: 10.1021/acs.nanolett.0c03383  0.16
2020 Ferreira MS, Jones MR, Callahan CM, Farelo L, Tolesa Z, Suchentrunk F, Boursot P, Mills LS, Alves PC, Good JM, Melo-Ferreira J. The Legacy of Recurrent Introgression during the Radiation of Hares. Systematic Biology. PMID 33263746 DOI: 10.1093/sysbio/syaa088  1
2020 Taghizadeh S, Jones MR, Olmer R, Ulrich S, Danopoulos S, Shen C, Chen C, Wilhelm J, Martin U, Chen C, Al Alam D, Bellusci S. Fgf10 Signaling-Based Evidence for the Existence of an Embryonic Stage Distinct From the Pseudoglandular Stage During Mouse Lung Development. Frontiers in Cell and Developmental Biology. 8: 576604. PMID 33195211 DOI: 10.3389/fcell.2020.576604  1
2020 Lingampally A, Jones MR, Bagari S, Chen C, Rivetti S, Bellusci S. Use of the Reversible Myogenic to Lipogenic Transdifferentiation Switch for the Design of Pre-clinical Drug Screening in Idiopathic Pulmonary Fibrosis. Frontiers in Bioengineering and Biotechnology. 8: 569865. PMID 33042971 DOI: 10.3389/Fbioe.2020.569865  1
2020 Sutton MA, van Dijk N, Levy PE, Jones MR, Leith ID, Sheppard LJ, Leeson S, Sim Tang Y, Stephens A, Braban CF, Dragosits U, Howard CM, Vieno M, Fowler D, Corbett P, et al. Alkaline air: changing perspectives on nitrogen and air pollution in an ammonia-rich world. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 378: 20190315. PMID 32981429 DOI: 10.1098/rsta.2019.0315  0.04
2020 Jones MR, Mills LS, Jensen JD, Good JM. The Origin and Spread of Locally Adaptive Seasonal Camouflage in Snowshoe Hares. The American Naturalist. 196: 316-332. PMID 32813993 DOI: 10.1086/710022  1
2020 Hauwiller MR, Ye X, Jones MR, Chan CM, Calvin JJ, Crook MF, Zheng H, Alivisatos AP. Tracking the Effects of Ligands on Oxidative Etching of Gold Nanorods in Graphene Liquid Cell Electron Microscopy. Acs Nano. PMID 32806045 DOI: 10.1021/Acsnano.0C03601  1
2020 Kress RN, Jones MR. Colloidal interactions get patchy and directional. Proceedings of the National Academy of Sciences of the United States of America. PMID 32601239 DOI: 10.1073/Pnas.2006330117  0.01
2020 Jones MR, Lingampally A, Wu J, Sedighi J, Ahmadvand N, Wilhelm J, Vazquez-Armendariz AI, Herold S, Chen C, Zhang JS, Bellusci S, Chao CM. Evidence for Overlapping and Distinct Biological Activities and Transcriptional Targets Triggered by Fibroblast Growth Factor Receptor 2b Signaling between Mid- and Early Pseudoglandular Stages of Mouse Lung Development. Cells. 9. PMID 32455591 DOI: 10.3390/Cells9051274  1
2020 Wooten AK, Shenoy AT, Arafa EI, Akiyama H, Martin IMC, Jones MR, Quinton LJ, Gummuluru S, Bai G, Mizgerd JP. Unique Roles for Phosphodiesterase 2 in Cyclic di-AMP Catabolism and Macrophage Responses. Frontiers in Immunology. 11: 554. PMID 32300347 DOI: 10.3389/Fimmu.2020.00554  1
2020 Jones MR, Mills LS, Jensen JD, Good JM. Convergent evolution of seasonal camouflage in response to reduced snow cover across the snowshoe hare range. Evolution; International Journal of Organic Evolution. PMID 32282064 DOI: 10.1111/Evo.13976  1
2020 Wang CF, Cheng Z, O'Callahan BT, Crampton KT, Jones MR, El-Khoury PZ. Tip-Enhanced Multipolar Raman Scattering. The Journal of Physical Chemistry Letters. PMID 32160470 DOI: 10.1021/Acs.Jpclett.0C00559  1
2020 Bhattarai A, Cheng Z, Joly AG, Novikova IV, Evans JE, Schultz ZD, Jones MR, El-Khoury PZ. Tip-Enhanced Raman Nano-Spectroscopy of Smooth Spherical Gold Nanoparticles. The Journal of Physical Chemistry Letters. PMID 32069408 DOI: 10.1021/Acs.Jpclett.0C00217.S001  1
2020 Guillon A, Arafa EI, Barker KA, Belkina AC, Martin IM, Shenoy AT, Wooten AK, Lyon De Ana C, Dai A, Labadorf A, Hernandez-Escalante J, Dooms H, Blasco H, Traber KE, Jones MR, et al. Pneumonia recovery reprograms the alveolar macrophage pool. Jci Insight. PMID 31990682 DOI: 10.1172/Jci.Insight.133042  1
2019 Wang W, Cohen JA, Wallrapp A, Trieu KG, Barrios J, Shao F, Krishnamoorthy N, Kuchroo VK, Jones MR, Fine A, Bai Y, Ai X. Age-Related Dopaminergic Innervation Augments T Helper 2-Type Allergic Inflammation in the Postnatal Lung. Immunity. PMID 31757673 DOI: 10.1016/J.Immuni.2019.10.002  0.12
2019 Shenoy AT, Wasserman GA, Arafa EI, Wooten AK, Smith NMS, Martin IMC, Jones MR, Quinton LJ, Mizgerd JP. Lung CD4 resident memory T cells remodel epithelial responses to accelerate neutrophil recruitment during pneumonia. Mucosal Immunology. PMID 31748706 DOI: 10.1038/S41385-019-0229-2  1
2019 Schweizer RM, Velotta JP, Ivy CM, Jones MR, Muir SM, Bradburd GS, Storz JF, Scott GR, Cheviron ZA. Physiological and genomic evidence that selection on the transcription factor Epas1 has altered cardiovascular function in high-altitude deer mice. Plos Genetics. 15: e1008420. PMID 31697676 DOI: 10.1371/Journal.Pgen.1008420  1
2019 Marolf DM, Jones MR. Measurement Challenges in Dynamic and Nonequilibrium Nanoscale Systems. Analytical Chemistry. PMID 31647638 DOI: 10.1021/Acs.Analchem.9B02702  0.01
2019 Traber KE, Dimbo EL, Symer EM, Korkmaz FT, Jones MR, Mizgerd JP, Quinton LJ. Roles of interleukin-11 during acute bacterial pneumonia. Plos One. 14: e0221029. PMID 31415618 DOI: 10.1371/Journal.Pone.0221029  1
2019 Harris RB, Irwin K, Jones MR, Laurent S, Barrett RDH, Nachman MW, Good JM, Linnen CR, Jensen JD, Pfeifer SP. The population genetics of crypsis in vertebrates: recent insights from mice, hares, and lizards. Heredity. PMID 31399719 DOI: 10.1038/S41437-019-0257-4  1
2019 Moreau LM, Jones MR, Roth EW, Wu J, Kewalramani S, O'Brien MN, Chen BR, Mirkin CA, Bedzyk MJ. The role of trace Ag in the synthesis of Au nanorods. Nanoscale. PMID 31183478 DOI: 10.1039/C9Nr03246K  1
2019 Kim Y, Allen E, Baird LA, Symer EM, Korkmaz FT, Na E, Odom CV, Jones MR, Mizgerd JP, Traber KE, Quinton LJ. NF-κB RelA is required for hepatoprotection during pneumonia and sepsis. Infection and Immunity. PMID 31160364 DOI: 10.1128/Iai.00132-19  1
2019 Jones MR, Luther GW, Mucci A, Tebo BM. Concentrations of reactive Mn(III)-L and MnO in estuarine and marine waters determined using spectrophotometry and the leuco base, leucoberbelin blue. Talanta. 200: 91-99. PMID 31036231 DOI: 10.1016/J.Talanta.2019.03.026  0.01
2019 Jones MR, Lingampally A, Dilai S, Shrestha A, Stripp B, Helmbacher F, Chen C, Chao CM, Bellusci S. Characterization of and Reporter Lines in the Context of Fibroblast Growth Factor 10 Signaling During Mouse Embryonic Lung Development. Frontiers in Genetics. 10: 178. PMID 30923534 DOI: 10.3389/Fgene.2019.00178  1
2019 Nelson TC, Jones MR, Velotta JP, Dhawanjewar AS, Schweizer RM. UNVEILing connections between genotype, phenotype, and fitness in natural populations. Molecular Ecology. PMID 30830713 DOI: 10.1111/mec.15067  1
2018 Jones MR, Dilai S, Lingampally A, Chao CM, Danopoulos S, Carraro G, Mukhametshina R, Wilhelm J, Baumgart-Vogt E, Al Alam D, Chen C, Minoo P, Zhang JS, Bellusci S. A Comprehensive Analysis of Fibroblast Growth Factor Receptor 2b Signaling on Epithelial Tip Progenitor Cells During Early Mouse Lung Branching Morphogenesis. Frontiers in Genetics. 9: 746. PMID 30728831 DOI: 10.3389/Fgene.2018.00746  1
2018 Hauwiller MR, Frechette L, Jones M, Ondry JC, Rotskoff GM, Geissler PL, Alivisatos AP. Unraveling Kinetically-Driven Mechanisms of Gold Nanocrystal Shape Transformations using Graphene Liquid Cell Electron Microscopy. Nano Letters. PMID 30107133 DOI: 10.1021/Acs.Nanolett.8B02337  1
2018 Jones MR, Mills LS, Alves PC, Callahan CM, Alves JM, Lafferty DJR, Jiggins FM, Jensen JD, Melo-Ferreira J, Good JM. Adaptive introgression underlies polymorphic seasonal camouflage in snowshoe hares. Science (New York, N.Y.). 360: 1355-1358. PMID 29930138 DOI: 10.1126/Science.Aar5273  1
2018 Yi C, Su MN, Dongare P, Chakraborty D, Cai YY, Marolf DM, Kress RN, Ostovar B, Tauzin LJ, Wen F, Chang WS, Jones M, Sader JE, Halas NJ, Link S. Polycrystallinity of Lithographically Fabricated Plasmonic Nanostructures Dominates Their Acoustic Vibrational Damping. Nano Letters. PMID 29715035 DOI: 10.1021/Acs.Nanolett.8B00559  1
2018 Raja SN, Ye X, Jones MR, Lin L, Govindjee S, Ritchie RO. Microscopic mechanisms of deformation transfer in high dynamic range branched nanoparticle deformation sensors. Nature Communications. 9: 1155. PMID 29559619 DOI: 10.1038/S41467-018-03396-5  1
2018 Lin QY, Mason JA, Li Z, Zhou W, O'Brien MN, Brown KA, Jones MR, Butun S, Lee B, Dravid VP, Aydin K, Mirkin CA. Building superlattices from individual nanoparticles via template-confined DNA-mediated assembly. Science (New York, N.Y.). PMID 29348364 DOI: 10.1126/Science.Aaq0591  1
2018 Rehn SM, Jones MR. New Strategies for Probing Energy Systems with In Situ Liquid-Phase Transmission Electron Microscopy Acs Energy Letters. 3: 1269-1278. DOI: 10.1021/Acsenergylett.8B00527  1
2017 Willinger CM, Rong J, Tanriverdi K, Courchesne PL, Huan T, Wasserman GA, Lin H, Dupuis J, Joehanes R, Jones MR, Chen G, Benjamin EJ, O'Connor GT, Mizgerd JP, Freedman JE, et al. MicroRNA Signature of Cigarette Smoking and Evidence for a Putative Causal Role of MicroRNAs in Smoking-Related Inflammation and Target Organ Damage. Circulation. Cardiovascular Genetics. 10. PMID 29030400 DOI: 10.1161/Circgenetics.116.001678  1
2017 Wasserman GA, Szymaniak AD, Hinds AC, Yamamoto K, Kamata H, Smith NM, Hilliard KL, Carrieri C, Labadorf AT, Quinton LJ, Ai X, Varelas X, Chen F, Mizgerd JP, Fine A, ... ... Jones MR, et al. Expression of Piwi protein MIWI2 defines a distinct population of multiciliated cells. The Journal of Clinical Investigation. PMID 28920925 DOI: 10.1172/Jci94639  1
2017 Jones MR, Kohlstedt KL, O'Brien MN, Wu J, Schatz GC, Mirkin CA. Deterministic Symmetry Breaking of Plasmonic Nanostructures Enabled by DNA-Programmable Assembly. Nano Letters. PMID 28820597 DOI: 10.1021/Acs.Nanolett.7B03067  1
2017 Kozlowski E, Wasserman GA, Morgan M, O'Carroll D, Ramirez NP, Gummuluru S, Rah JY, Gower AC, Ieong M, Quinton LJ, Mizgerd JP, Jones MR. The RNA uridyltransferase Zcchc6 is expressed in macrophages and impacts innate immune responses. Plos One. 12: e0179797. PMID 28665939 DOI: 10.1371/Journal.Pone.0179797  1
2017 Traber KE, Symer EM, Allen E, Kim Y, Hilliard KL, Wasserman GA, Stewart CL, Jones MR, Mizgerd JP, Quinton LJ. Myeloid-epithelial crosstalk coordinates synthesis of the tissue protective cytokine leukemia inhibitory factor during pneumonia. American Journal of Physiology. Lung Cellular and Molecular Physiology. ajplung.00482.2016. PMID 28522567 DOI: 10.1152/Ajplung.00482.2016  1
2017 Singh A, Singh A, Ong GK, Jones MR, Nordlund D, Bustillo K, Ciston J, Alivisatos AP, Milliron DJ. Dopant Mediated Assembly of Cu2ZnSnS4 Nanorods into Atomically Coupled 2D Sheets in Solution. Nano Letters. PMID 28485598 DOI: 10.1021/Acs.Nanolett.7B00232  1
2017 Coleman FT, Blahna MT, Kamata H, Yamamoto K, Zabinski MC, Kramnik I, Wilson AA, Kotton DN, Quinton LJ, Jones MR, Pelton SI, Mizgerd JP. The capacity of pneumococci to activate macrophage NF-kB determines necroptosis and pneumonia severity. The Journal of Infectious Diseases. PMID 28368460 DOI: 10.1093/Infdis/Jix159  1
2017 Gutierrez-Vazquez C, Enright AJ, Rodríguez-Galán A, Perez-García A, Collier P, Jones MR, Benes V, Mizgerd JP, Mittelbrunn M, Ramiro AR, Sanchez-Madrid F. 3'uridylation controls mature microRNA turnover during CD4 T cell activation. Rna (New York, N.Y.). PMID 28351886 DOI: 10.1261/Rna.060095.116  1
2016 Cho H, Jones MR, Nguyen S, Hauwiller MR, Zettl A, Alivisatos P. The Use of Graphene and Its Derivatives for Liquid Phase Transmission Electron Microscopy of Radiation-Sensitive Specimens. Nano Letters. PMID 28026186 DOI: 10.1021/Acs.Nanolett.6B04383  1
2016 Ye X, Jones MR, Frechette LB, Chen Q, Powers AS, Ercius P, Dunn G, Rotskoff GM, Nguyen SC, Adiga VP, Zettl A, Rabani E, Geissler PL, Alivisatos AP. Single-particle mapping of nonequilibrium nanocrystal transformations. Science (New York, N.Y.). 354: 874-877. PMID 27856905 DOI: 10.1126/Science.Aah4434  1
2016 Kim J, Jones MR, Ou Z, Chen Q. In-Situ Electron Microscopy Imaging and Quantitative Structural Modulation of Nanoparticle Superlattices. Acs Nano. PMID 27723304 DOI: 10.1021/Acsnano.6B05270  0.2
2016 O'Brien MN, Jones MR, Mirkin CA. The nature and implications of uniformity in the hierarchical organization of nanomaterials. Proceedings of the National Academy of Sciences of the United States of America. PMID 27671628 DOI: 10.1073/Pnas.1605289113  1
2016 Wang Z, Monteiro CD, Jagodnik KM, Fernandez NF, Gundersen GW, Rouillard AD, Jenkins SL, Feldmann AS, Hu KS, McDermott MG, Duan Q, Clark NR, Jones MR, Kou Y, Goff T, et al. Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd. Nature Communications. 7: 12846. PMID 27667448 DOI: 10.7490/F1000Research.1113422.1  1
2016 Corbett-Detig R, Jones M. SELAM: Simulation of Epistasis and Local adaptation during Admixture with Mate choice. Bioinformatics (Oxford, England). PMID 27318207 DOI: 10.1093/Bioinformatics/Btw365  1
2016 Kuleshov MV, Jones MR, Rouillard AD, Fernandez NF, Duan Q, Wang Z, Koplev S, Jenkins SL, Jagodnik KM, Lachmann A, McDermott MG, Monteiro CD, Gundersen GW, Ma'ayan A. Enrichr: a comprehensive gene set enrichment analysis web server 2016 update. Nucleic Acids Research. PMID 27141961 DOI: 10.1093/Nar/Gkw377  1
2016 Kamata H, Yamamoto K, Wasserman GA, Zabinski MC, Yuen CK, Lung WY, Gower AC, Belkina AC, Ramirez MI, Deng JC, Quinton LJ, Jones MR, Mizgerd JP. Epithelial Cell-derived Secreted and Transmembrane 1a (Sectm1a) Signals to Activated Neutrophils During Pneumococcal Pneumonia. American Journal of Respiratory Cell and Molecular Biology. PMID 27064756 DOI: 10.1165/Rcmb.2015-0261Oc  1
2016 Kim Y, Macfarlane RJ, Jones MR, Mirkin CA. Transmutable nanoparticles with reconfigurable surface ligands. Science (New York, N.Y.). 351: 579-82. PMID 26912697 DOI: 10.1126/Science.Aad2212  1
2015 Clark NR, Szymkiewicz M, Wang Z, Monteiro CD, Jones MR, Ma'ayan A. Principal Angle Enrichment Analysis (PAEA): Dimensionally Reduced Multivariate Gene Set Enrichment Analysis Tool. Proceedings. Ieee International Conference On Bioinformatics and Biomedicine. 2015: 256-262. PMID 26848405 DOI: 10.1109/BIBM.2015.7359689  1
2015 Ye X, Zhu C, Ercius P, Raja SN, He B, Jones MR, Hauwiller MR, Liu Y, Xu T, Alivisatos AP. Structural diversity in binary superlattices self-assembled from polymer-grafted nanocrystals. Nature Communications. 6: 10052. PMID 26628256 DOI: 10.1038/Ncomms10052  1
2015 Forester BR, Jones MR, Joost S, Landguth EL, Lasky JR. Detecting spatial genetic signatures of local adaptation in heterogeneous landscapes. Molecular Ecology. PMID 26576498 DOI: 10.1111/Mec.13476  1
2015 Hilliard KL, Allen E, Traber KE, Kim Y, Wasserman GA, Jones MR, Mizgerd JP, Quinton LJ. Activation of Hepatic STAT3 Maintains Pulmonary Defense during Endotoxemia. Infection and Immunity. 83: 4015-27. PMID 26216424 DOI: 10.1128/Iai.00464-15  1
2015 Stockton SD, Gomes I, Liu T, Moraje C, Hipólito L, Jones MR, Ma'ayan A, Morón JA, Li H, Devi LA. Morphine Regulated Synaptic Networks Revealed by Integrated Proteomics and Network Analysis. Molecular & Cellular Proteomics : McP. PMID 26149443 DOI: 10.1074/Mcp.M115.047977  1
2015 Jones MR, Good JM. Targeted capture in evolutionary and ecological genomics. Molecular Ecology. PMID 26137993 DOI: 10.1111/Mec.13304  1
2015 O'Brien MN, Jones MR, Lee B, Mirkin CA. Anisotropic nanoparticle complementarity in DNA-mediated co-crystallization. Nature Materials. PMID 26006002 DOI: 10.1038/Nmat4293  1
2015 Gundersen GW, Jones MR, Rouillard AD, Kou Y, Monteiro CD, Feldmann AS, Hu KS, Ma'ayan A. GEO2Enrichr: browser extension and server app to extract gene sets from GEO and analyze them for biological functions. Bioinformatics (Oxford, England). PMID 25971742 DOI: 10.1093/bioinformatics/btv297  1
2015 Moore TJ, Jones MR. Experimental measurements of the spectral absorption coefficient of pure fused silica optical fibers. Applied Optics. 54: 1374-8. PMID 25968202 DOI: 10.1364/AO.54.001374  1
2015 Jones MR, Cheviron ZA, Carling MD. Spatially variable coevolution between a haemosporidian parasite and the MHC of a widely distributed passerine. Ecology and Evolution. 5: 1045-60. PMID 25798222 DOI: 10.1002/ece3.1391  1
2015 Randeria PS, Jones MR, Kohlstedt KL, Banga RJ, Olvera de la Cruz M, Schatz GC, Mirkin CA. What controls the hybridization thermodynamics of spherical nucleic acids? Journal of the American Chemical Society. 137: 3486-9. PMID 25738968 DOI: 10.1021/Jacs.5B00670  1
2015 Jones MR, Seeman NC, Mirkin CA. Nanomaterials. Programmable materials and the nature of the DNA bond. Science (New York, N.Y.). 347: 1260901. PMID 25700524 DOI: 10.1126/Science.1260901  1
2015 Traber KE, Hilliard KL, Allen E, Wasserman GA, Yamamoto K, Jones MR, Mizgerd JP, Quinton LJ. Oncostatin M Induces STAT3-dependent CXCL5 Expression and Neutrophil Recruitment During Pneumonia. American Journal of Respiratory Cell and Molecular Biology. PMID 25692402 DOI: 10.1165/Rcmb.2014-0342Oc  1
2015 Hilliard KL, Allen E, Traber KE, Yamamoto K, Stauffer NM, Wasserman GA, Jones MR, Mizgerd JP, Quinton LJ. The Lung-Liver Axis Facilitates Pulmonary Innate Immunity and Hepatoprotection during Pneumonia. American Journal of Respiratory Cell and Molecular Biology. PMID 25607543 DOI: 10.1165/Rcmb.2014-0195Oc  1
2015 O'Brien MN, Jones MR, Kohlstedt KL, Schatz GC, Mirkin CA. Uniform circular disks with synthetically tailorable diameters: two-dimensional nanoparticles for plasmonics. Nano Letters. 15: 1012-7. PMID 25562383 DOI: 10.1021/Nl5038566  1
2014 Hyatt LD, Wasserman GA, Rah YJ, Matsuura KY, Coleman FT, Hilliard KL, Pepper-Cunningham ZA, Ieong M, Stumpo DJ, Blackshear PJ, Quinton LJ, Mizgerd JP, Jones MR. Myeloid ZFP36L1 does not regulate inflammation or host defense in mouse models of acute bacterial infection. Plos One. 9: e109072. PMID 25299049 DOI: 10.1371/Journal.Pone.0109072  1
2014 Jones MR, Cheviron ZA, Carling MD. Variation in positively selected major histocompatibility complex class I loci in rufous-collared sparrows (Zonotrichia capensis). Immunogenetics. 66: 693-704. PMID 25186067 DOI: 10.1007/s00251-014-0800-7  1
2014 O'Brien MN, Radha B, Brown KA, Jones MR, Mirkin CA. Langmuir analysis of nanoparticle polyvalency in DNA-mediated adsorption. Angewandte Chemie (International Ed. in English). 53: 9532-8. PMID 25044776 DOI: 10.1002/Anie.201405317  1
2014 O'Brien MN, Jones MR, Brown KA, Mirkin CA. Universal noble metal nanoparticle seeds realized through iterative reductive growth and oxidative dissolution reactions. Journal of the American Chemical Society. 136: 7603-6. PMID 24830921 DOI: 10.1021/Ja503509K  1
2014 Zhou Y, Zhou X, Park DJ, Torabi K, Brown KA, Jones MR, Zhang C, Schatz GC, Mirkin CA. Shape-selective deposition and assembly of anisotropic nanoparticles. Nano Letters. 14: 2157-61. PMID 24661194 DOI: 10.1021/Nl500471G  1
2014 Hu R, Pan W, Fedulov AV, Jester W, Jones MR, Weiss ST, Panettieri RA, Tantisira K, Lu Q. MicroRNA-10a controls airway smooth muscle cell proliferation via direct targeting of the PI3 kinase pathway. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 28: 2347-57. PMID 24522205 DOI: 10.1096/Fj.13-247247  1
2014 Young KL, Ross MB, Blaber MG, Rycenga M, Jones MR, Zhang C, Senesi AJ, Lee B, Schatz GC, Mirkin CA. Using DNA to design plasmonic metamaterials with tunable optical properties. Advanced Materials (Deerfield Beach, Fla.). 26: 653-9. PMID 24166990 DOI: 10.1002/Adma.201302938  1
2014 Yamamoto K, Ahyi AN, Pepper-Cunningham ZA, Ferrari JD, Wilson AA, Jones MR, Quinton LJ, Mizgerd JP. Roles of lung epithelium in neutrophil recruitment during pneumococcal pneumonia. American Journal of Respiratory Cell and Molecular Biology. 50: 253-62. PMID 24010952 DOI: 10.1165/Rcmb.2013-0114Oc  1
2014 Mangelson BF, Jones MR, Park DJ, Shade CM, Schatz GC, Mirkin CA. Synthesis and characterization of a plasmonic-semiconductor composite containing rationally designed, optically tunable gold nanorod dimers and anatase TiO2 Chemistry of Materials. 26: 3818-3824. DOI: 10.1021/Cm5014625  1
2013 Jones MR, Forester BR, Teufel AI, Adams RV, Anstett DN, Goodrich BA, Landguth EL, Joost S, Manel S. Integrating landscape genomics and spatially explicit approaches to detect loci under selection in clinal populations. Evolution; International Journal of Organic Evolution. 67: 3455-68. PMID 24299400 DOI: 10.1111/Evo.12237  1
2013 Jones MR, Nightingale PD, Turner SM, Liss PS. Adaptation of a load-inject valve for a flow injection chemiluminescence system enabling dual-reagent injection enhances understanding of environmental Fenton chemistry. Analytica Chimica Acta. 796: 55-60. PMID 24016583 DOI: 10.1016/j.aca.2013.08.003  1
2013 Macfarlane RJ, Jones MR, Lee B, Auyeung E, Mirkin CA. Topotactic interconversion of nanoparticle superlattices. Science (New York, N.Y.). 341: 1222-5. PMID 23970559 DOI: 10.1126/Science.1241402  1
2013 Senesi AJ, Eichelsdoerfer DJ, Macfarlane RJ, Jones MR, Auyeung E, Lee B, Mirkin CA. Stepwise evolution of DNA-programmable nanoparticle superlattices. Angewandte Chemie (International Ed. in English). 52: 6624-8. PMID 23681747 DOI: 10.1002/Anie.201301936  1
2013 Ahyi AN, Quinton LJ, Jones MR, Ferrari JD, Pepper-Cunningham ZA, Mella JR, Remick DG, Mizgerd JP. Roles of STAT3 in protein secretion pathways during the acute-phase response. Infection and Immunity. 81: 1644-53. PMID 23460517 DOI: 10.1128/Iai.01332-12  1
2013 Jones MR, Mirkin CA. Bypassing the limitations of classical chemical purification with DNA-programmable nanoparticle recrystallization. Angewandte Chemie (International Ed. in English). 52: 2886-91. PMID 23404954 DOI: 10.1002/Anie.201209504  1
2012 Jones MR, Blahna MT, Kozlowski E, Matsuura KY, Ferrari JD, Morris SA, Powers JT, Daley GQ, Quinton LJ, Mizgerd JP. Zcchc11 uridylates mature miRNAs to enhance neonatal IGF-1 expression, growth, and survival. Plos Genetics. 8: e1003105. PMID 23209448 DOI: 10.1371/Journal.Pgen.1003105  1
2012 Jones MR, Mirkin CA. Materials science: Self-assembly gets new direction. Nature. 491: 42-3. PMID 23128220 DOI: 10.1038/491042A  1
2012 Yamamoto K, Ferrari JD, Cao Y, Ramirez MI, Jones MR, Quinton LJ, Mizgerd JP. Type I alveolar epithelial cells mount innate immune responses during pneumococcal pneumonia. Journal of Immunology (Baltimore, Md. : 1950). 189: 2450-9. PMID 22844121 DOI: 10.4049/Jimmunol.1200634  1
2012 Quinton LJ, Mizgerd JP, Hilliard KL, Jones MR, Kwon CY, Allen E. Leukemia inhibitory factor signaling is required for lung protection during pneumonia. Journal of Immunology (Baltimore, Md. : 1950). 188: 6300-8. PMID 22581855 DOI: 10.4049/Jimmunol.1200256  1
2012 Quinton LJ, Blahna MT, Jones MR, Allen E, Ferrari JD, Hilliard KL, Zhang X, Sabharwal V, Algül H, Akira S, Schmid RM, Pelton SI, Spira A, Mizgerd JP. Hepatocyte-specific mutation of both NF-κB RelA and STAT3 abrogates the acute phase response in mice. The Journal of Clinical Investigation. 122: 1758-63. PMID 22466650 DOI: 10.1172/Jci59408  1
2012 Young KL, Jones MR, Zhang J, Macfarlane RJ, Esquivel-Sirvent R, Nap RJ, Wu J, Schatz GC, Lee B, Mirkin CA. Assembly of reconfigurable one-dimensional colloidal superlattices due to a synergy of fundamental nanoscale forces. Proceedings of the National Academy of Sciences of the United States of America. 109: 2240-5. PMID 22308436 DOI: 10.1073/Pnas.1119301109  1
2012 Auyeung E, Cutler JI, Macfarlane RJ, Jones MR, Wu J, Liu G, Zhang K, Osberg KD, Mirkin CA. Synthetically programmable nanoparticle superlattices using a hollow three-dimensional spacer approach. Nature Nanotechnology. 7: 24-8. PMID 22157725 DOI: 10.1038/Nnano.2011.222  1
2011 Jones MR, Macfarlane RJ, Prigodich AE, Patel PC, Mirkin CA. Nanoparticle shape anisotropy dictates the collective behavior of surface-bound ligands. Journal of the American Chemical Society. 133: 18865-9. PMID 22043984 DOI: 10.1021/Ja206777K  1
2011 Blahna MT, Jones MR, Quinton LJ, Matsuura KY, Mizgerd JP. Terminal uridyltransferase enzyme Zcchc11 promotes cell proliferation independent of its uridyltransferase activity. The Journal of Biological Chemistry. 286: 42381-9. PMID 22006926 DOI: 10.1074/Jbc.M111.259689  1
2011 Macfarlane RJ, Lee B, Jones MR, Harris N, Schatz GC, Mirkin CA. Nanoparticle superlattice engineering with DNA. Science (New York, N.Y.). 334: 204-8. PMID 21998382 DOI: 10.1126/Science.1210493  1
2011 Jones MR, Osberg KD, Macfarlane RJ, Langille MR, Mirkin CA. Templated techniques for the synthesis and assembly of plasmonic nanostructures. Chemical Reviews. 111: 3736-827. PMID 21648955 DOI: 10.1021/Cr1004452  1
2011 Machan CW, Spokoyny AM, Jones MR, Sarjeant AA, Stern CL, Mirkin CA. Plasticity of the nickel(II) coordination environment in complexes with hemilabile phosphino thioether ligands. Journal of the American Chemical Society. 133: 3023-33. PMID 21319748 DOI: 10.1021/Ja109624M  1
2010 Jones MR, Macfarlane RJ, Lee B, Zhang J, Young KL, Senesi AJ, Mirkin CA. DNA-nanoparticle superlattices formed from anisotropic building blocks. Nature Materials. 9: 913-7. PMID 20890281 DOI: 10.1038/Nmat2870  1
2010 Macfarlane RJ, Jones MR, Senesi AJ, Young KL, Lee B, Wu J, Mirkin CA. Establishing the design rules for DNA-mediated programmable colloidal crystallization. Angewandte Chemie (International Ed. in English). 49: 4589-92. PMID 20486143 DOI: 10.1002/Anie.201000633  1
2009 Jones MR, Quinton LJ, Blahna MT, Neilson JR, Fu S, Ivanov AR, Wolf DA, Mizgerd JP. Zcchc11-dependent uridylation of microRNA directs cytokine expression. Nature Cell Biology. 11: 1157-63. PMID 19701194 DOI: 10.1038/Ncb1931  1
2009 Jones MR, Millstone JE, Giljohann DA, Seferos DS, Young KL, Mirkin CA. Plasmonically controlled nucleic acid dehybridization with gold nanoprisms. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 10: 1461-5. PMID 19431161 DOI: 10.1002/Cphc.200900269  1
2009 Quinton LJ, Jones MR, Robson BE, Mizgerd JP. Mechanisms of the hepatic acute-phase response during bacterial pneumonia. Infection and Immunity. 77: 2417-26. PMID 19289507 DOI: 10.1128/Iai.01300-08  1
2008 Ahern J, Jones MR, Bakshis E, Galea S. Revisiting rose: comparing the benefits and costs of population-wide and targeted interventions. The Milbank Quarterly. 86: 581-600. PMID 19120981 DOI: 10.1111/J.1468-0009.2008.00535.X  0.01
2008 Millstone JE, Wei W, Jones MR, Yoo H, Mirkin CA. Iodide ions control seed-mediated growth of anisotropic gold nanoparticles. Nano Letters. 8: 2526-9. PMID 18642955 DOI: 10.1021/nl8016253  1
2008 Quinton LJ, Jones MR, Robson BE, Simms BT, Whitsett JA, Mizgerd JP. Alveolar epithelial STAT3, IL-6 family cytokines, and host defense during Escherichia coli pneumonia. American Journal of Respiratory Cell and Molecular Biology. 38: 699-706. PMID 18192501 DOI: 10.1165/Rcmb.2007-0365Oc  1
2008 McCrann DJ, Nguyen HG, Jones MR, Ravid K. Vascular smooth muscle cell polyploidy: an adaptive or maladaptive response? Journal of Cellular Physiology. 215: 588-92. PMID 18181174 DOI: 10.1002/Jcp.21363  1
2007 Yang D, McCrann DJ, Nguyen H, St Hilaire C, DePinho RA, Jones MR, Ravid K. Increased polyploidy in aortic vascular smooth muscle cells during aging is marked by cellular senescence. Aging Cell. 6: 257-60. PMID 17291294 DOI: 10.1111/J.1474-9726.2007.00274.X  1
2007 Quinton LJ, Jones MR, Simms BT, Kogan MS, Robson BE, Skerrett SJ, Mizgerd JP. Functions and regulation of NF-kappaB RelA during pneumococcal pneumonia. Journal of Immunology (Baltimore, Md. : 1950). 178: 1896-903. PMID 17237440 DOI: 10.4049/Jimmunol.178.3.1896  1
2006 Yang D, Zhang Y, Nguyen HG, Koupenova M, Chauhan AK, Makitalo M, Jones MR, St Hilaire C, Seldin DC, Toselli P, Lamperti E, Schreiber BM, Gavras H, Wagner DD, Ravid K. The A2B adenosine receptor protects against inflammation and excessive vascular adhesion. The Journal of Clinical Investigation. 116: 1913-23. PMID 16823489 DOI: 10.1172/Jci27933  1
2006 Jones MR, Quinton LJ, Simms BT, Lupa MM, Kogan MS, Mizgerd JP. Roles of interleukin-6 in activation of STAT proteins and recruitment of neutrophils during Escherichia coli pneumonia. The Journal of Infectious Diseases. 193: 360-9. PMID 16388483 DOI: 10.1086/499312  1
2005 Martins HM, Jones MR. What explains doctors' usage of Mobile Information and Communication Technologies? A comparison of US and Portuguese hospitals. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 495-9. PMID 16779089  1
2005 Jones MR, Simms BT, Lupa MM, Kogan MS, Mizgerd JP. Lung NF-kappaB activation and neutrophil recruitment require IL-1 and TNF receptor signaling during pneumococcal pneumonia. Journal of Immunology (Baltimore, Md. : 1950). 175: 7530-5. PMID 16301661 DOI: 10.4049/Jimmunol.175.11.7530  1
2005 Nguyen HG, Yu G, Makitalo M, Yang D, Xie HX, Jones MR, Ravid K. Conditional overexpression of transgenes in megakaryocytes and platelets in vivo. Blood. 106: 1559-64. PMID 15890684 DOI: 10.1182/Blood-2005-02-0638  1
2005 Nagata Y, Jones MR, Nguyen HG, McCrann DJ, St Hilaire C, Schreiber BM, Hashimoto A, Inagaki M, Earnshaw WC, Todokoro K, Ravid K. Vascular smooth muscle cell polyploidization involves changes in chromosome passenger proteins and an endomitotic cell cycle. Experimental Cell Research. 305: 277-91. PMID 15817153 DOI: 10.1016/J.Yexcr.2004.12.028  1
2005 Faffe DS, Flynt L, Mellema M, Moore PE, Silverman ES, Subramaniam V, Jones MR, Mizgerd JP, Whitehead T, Imrich A, Panettieri RA, Shore SA. Oncostatin M causes eotaxin-1 release from airway smooth muscle: synergy with IL-4 and IL-13. The Journal of Allergy and Clinical Immunology. 115: 514-20. PMID 15753898 DOI: 10.1016/J.Jaci.2004.11.033  1
2004 Roper RT, Jones MR. Benchmark solution for the prediction of temperature distributions during radiofrequency ablation of cardiac tissue. Journal of Biomechanical Engineering. 126: 519-22. PMID 15543871  0.01
2004 Jones MR, Zhao Z, Sullivan CP, Schreiber BM, Stone PJ, Toselli PA, Kagan HM, Cohen RA, Ravid K. A(3) adenosine receptor deficiency does not influence atherogenesis. Journal of Cellular Biochemistry. 92: 1034-43. PMID 15258925 DOI: 10.1002/Jcb.20122  1
2004 Zhang Y, Nagata Y, Yu G, Nguyen HG, Jones MR, Toselli P, Jackson CW, Tatsuka M, Todokoro K, Ravid K. Aberrant quantity and localization of Aurora-B/AIM-1 and survivin during megakaryocyte polyploidization and the consequences of Aurora-B/AIM-1-deregulated expression. Blood. 103: 3717-26. PMID 14751927 DOI: 10.1182/Blood-2003-09-3365  1
2004 Jones MR, Ravid K. Vascular smooth muscle polyploidization as a biomarker for aging and its impact on differential gene expression. The Journal of Biological Chemistry. 279: 5306-13. PMID 14634004 DOI: 10.1074/Jbc.M308406200  1
2002 Marcon AS, Rapuano CJ, Jones MR, Laibson PR, Cohen EJ. Descemet's membrane detachment after cataract surgery: management and outcome. Ophthalmology. 109: 2325-30. PMID 12466178  0.01
2002 Ravid K, Lu J, Zimmet JM, Jones MR. Roads to polyploidy: the megakaryocyte example. Journal of Cellular Physiology. 190: 7-20. PMID 11807806 DOI: 10.1002/Jcp.10035  1
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