James E. Ferrell - Publications

Affiliations: 
Chemical & Systems Biology Stanford University, Palo Alto, CA 
Area:
eukaryotic cell cycle
Website:
https://biochemistry.stanford.edu/james-ferrell

143 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Huang WYC, Ferrell JE, Cheng X. Measuring Molecular Diffusion in Self-Organizing Xenopus Extracts by Fluorescence Correlation Spectroscopy. Methods in Molecular Biology (Clifton, N.J.). 2740: 107-115. PMID 38393471 DOI: 10.1007/978-1-0716-3557-5_6  0.396
2022 Huang WYC, Cheng X, Ferrell JE. Cytoplasmic organization promotes protein diffusion in Xenopus extracts. Nature Communications. 13: 5599. PMID 36151204 DOI: 10.1038/s41467-022-33339-0  0.392
2021 Song IK, Kim MS, Ferrell JE, Shin DH, Lee KJ. Stepwise Oxidations Play Key Roles in the Structural and Functional Regulations of DJ-1. The Biochemical Journal. PMID 34515295 DOI: 10.1042/BCJ20210245  0.276
2021 Chen Y, Ferrell JE. C. elegans colony formation as a condensation phenomenon. Nature Communications. 12: 4947. PMID 34400648 DOI: 10.1038/s41467-021-25244-9  0.26
2021 Cheng X, Ferrell JE. Xenopus laevis Egg Extract Preparation and Live Imaging Methods for Visualizing Dynamic Cytoplasmic Organization. Journal of Visualized Experiments : Jove. PMID 34152312 DOI: 10.3791/61923  0.446
2021 Kamenz J, Qiao R, Yang Q, Ferrell JE. Real-Time Monitoring of APC /C-Mediated Substrate Degradation Using Xenopus laevis Egg Extracts. Methods in Molecular Biology (Clifton, N.J.). 2329: 29-38. PMID 34085213 DOI: 10.1007/978-1-0716-1538-6_3  0.777
2020 Kamenz J, Gelens L, Ferrell JE. Bistable, Biphasic Regulation of PP2A-B55 Accounts for the Dynamics of Mitotic Substrate Phosphorylation. Current Biology : Cb. PMID 33357450 DOI: 10.1016/j.cub.2020.11.058  0.778
2020 Afanzar O, Buss GK, Stearns T, Ferrell JE. The nucleus serves as the pacemaker for the cell cycle. Elife. 9. PMID 33284106 DOI: 10.7554/eLife.59989  0.342
2020 Lockhead S, Moskaleva A, Kamenz J, Chen Y, Kang M, Reddy AR, Santos SDM, Ferrell JE. The Apparent Requirement for Protein Synthesis during G2 Phase Is due to Checkpoint Activation. Cell Reports. 32: 107901. PMID 32668239 DOI: 10.1016/J.Celrep.2020.107901  0.773
2019 Cheng X, Ferrell JE. Spontaneous emergence of cell-like organization in egg extracts. Science (New York, N.Y.). 366: 631-637. PMID 31672897 DOI: 10.1126/Science.Aav7793  0.56
2019 Chung HK, Zou X, Bajar BT, Brand VR, Huo Y, Alcudia JF, Ferrell JE, Lin MZ. A compact synthetic pathway rewires cancer signaling to therapeutic effector release. Science (New York, N.Y.). 364. PMID 31048459 DOI: 10.1126/Science.Aat6982  0.756
2019 Tsai TY, Collins SR, Chan CK, Hadjitheodorou A, Lam PY, Lou SS, Yang HW, Jorgensen J, Ellett F, Irimia D, Davidson MW, Fischer RS, Huttenlocher A, Meyer T, Ferrell JE, et al. Efficient Front-Rear Coupling in Neutrophil Chemotaxis by Dynamic Myosin II Localization. Developmental Cell. 49: 189-205.e6. PMID 31014479 DOI: 10.1016/J.Devcel.2019.03.025  0.729
2019 Roake CM, Chen L, Chakravarthy AL, Ferrell JE, Raffa GD, Artandi SE. Disruption of Telomerase RNA Maturation Kinetics Precipitates Disease. Molecular Cell. PMID 30930056 DOI: 10.1016/J.Molcel.2019.02.033  0.409
2018 Cheng X, Ferrell JE. Apoptosis propagates through the cytoplasm as trigger waves. Science (New York, N.Y.). 361: 607-612. PMID 30093599 DOI: 10.1126/Science.Aah4065  0.536
2017 Anderson GA, Gelens L, Baker JC, Ferrell JE. Desynchronizing Embryonic Cell Division Waves Reveals the Robustness of Xenopus laevis Development. Cell Reports. 21: 37-46. PMID 28978482 DOI: 10.1016/J.Celrep.2017.09.017  0.698
2017 Lee JJ, Yang SY, Park J, Ferrell JE, Shin DH, Lee KJ. Calcium Ion Induced Structural Changes Promote Dimerization of Secretagogin, Which Is Required for Its Insulin Secretory Function. Scientific Reports. 7: 6976. PMID 28765527 DOI: 10.1038/S41598-017-07072-4  0.37
2017 Kamenz J, Ferrell JE. The Temporal Ordering of Cell-Cycle Phosphorylation. Molecular Cell. 65: 371-373. PMID 28157499 DOI: 10.1016/J.Molcel.2017.01.025  0.78
2016 Ha SH, Kim SY, Ferrell JE. The Prozone Effect Accounts for the Paradoxical Function of the Cdk-Binding Protein Suc1/Cks. Cell Reports. 16: 2047. PMID 27533180 DOI: 10.1016/j.celrep.2016.07.073  0.606
2016 Ha SH, Ferrell JE. Thresholds and ultrasensitivity from negative cooperativity. Science (New York, N.Y.). PMID 27174675 DOI: 10.1126/science.aad5937  0.236
2016 Ferrell JE. Perfect and Near-Perfect Adaptation in Cell Signaling. Cell Systems. 2: 62-7. PMID 27135159 DOI: 10.1016/J.Cels.2016.02.006  0.4
2016 Ha SH, Kim SY, Ferrell JE. The Prozone Effect Accounts for the Paradoxical Function of the Cdk-Binding Protein Suc1/Cks. Cell Reports. PMID 26854218 DOI: 10.1016/J.Celrep.2016.01.033  0.679
2016 Ferrell JE. Perfect and near-perfect adaptation in cell signaling Cell Systems. 2: 62-67. DOI: 10.1016/j.cels.2016.02.006  0.289
2015 Gelens L, Huang KC, Ferrell JE. How Does the Xenopus laevis Embryonic Cell Cycle Avoid Spatial Chaos? Cell Reports. 12: 892-900. PMID 26212326 DOI: 10.1016/J.Celrep.2015.06.070  0.705
2015 Gelens L, Huang KC, Ferrell JE. How Does the Xenopus laevis Embryonic Cell Cycle Avoid Spatial Chaos? Cell Reports. DOI: 10.1016/j.celrep.2015.06.070  0.307
2014 Ferrell JE, Ha SH. Ultrasensitivity part III: cascades, bistable switches, and oscillators. Trends in Biochemical Sciences. 39: 612-8. PMID 25456048 DOI: 10.1016/J.Tibs.2014.10.002  0.647
2014 Ferrell JE, Ha SH. Ultrasensitivity part II: multisite phosphorylation, stoichiometric inhibitors, and positive feedback. Trends in Biochemical Sciences. 39: 556-69. PMID 25440716 DOI: 10.1016/J.Tibs.2014.09.003  0.661
2014 Gelens L, Anderson GA, Ferrell JE. Spatial trigger waves: positive feedback gets you a long way. Molecular Biology of the Cell. 25: 3486-93. PMID 25368427 DOI: 10.1091/Mbc.E14-08-1306  0.669
2014 Ferrell JE, Ha SH. Ultrasensitivity part I: Michaelian responses and zero-order ultrasensitivity. Trends in Biochemical Sciences. 39: 496-503. PMID 25240485 DOI: 10.1016/J.Tibs.2014.08.003  0.64
2014 Tsai TY, Theriot JA, Ferrell JE. Changes in oscillatory dynamics in the cell cycle of early Xenopus laevis embryos. Plos Biology. 12: e1001788. PMID 24523664 DOI: 10.1371/Journal.Pbio.1001788  0.746
2013 Ferrell JE. Feedback loops and reciprocal regulation: recurring motifs in the systems biology of the cell cycle. Current Opinion in Cell Biology. 25: 676-86. PMID 23927869 DOI: 10.1016/j.ceb.2013.07.007  0.381
2013 Chang JB, Ferrell JE. Mitotic trigger waves and the spatial coordination of the Xenopus cell cycle. Nature. 500: 603-7. PMID 23863935 DOI: 10.1038/Nature12321  0.407
2013 Yang Q, Ferrell JE. The Cdk1-APC/C cell cycle oscillator circuit functions as a time-delayed, ultrasensitive switch. Nature Cell Biology. 15: 519-25. PMID 23624406 DOI: 10.1038/Ncb2737  0.578
2012 Anderson GA, Liu X, Ferrell JE. Bistability in one equation or fewer. Methods in Molecular Biology (Clifton, N.J.). 880: 53-67. PMID 23361981 DOI: 10.1007/978-1-61779-833-7_4  0.346
2012 Santos SD, Wollman R, Meyer T, Ferrell JE. Spatial positive feedback at the onset of mitosis. Cell. 149: 1500-13. PMID 22726437 DOI: 10.1016/J.Cell.2012.05.028  0.663
2012 Ferrell JE. Bistability, bifurcations, and Waddington's epigenetic landscape. Current Biology : Cb. 22: R458-66. PMID 22677291 DOI: 10.1016/j.cub.2012.03.045  0.318
2012 Ferrell JE. Dora B. Goldstein 1922-2011. Addiction (Abingdon, England). 107: 1013-4. PMID 22324380 DOI: 10.1111/J.1360-0443.2011.03746.X  0.329
2011 Pearlman SM, Serber Z, Ferrell JE. A mechanism for the evolution of phosphorylation sites. Cell. 147: 934-46. PMID 22078888 DOI: 10.1016/J.Cell.2011.08.052  0.438
2011 Ferrell JE. Simple rules for complex processes: new lessons from the budding yeast cell cycle. Molecular Cell. 43: 497-500. PMID 21855788 DOI: 10.1016/j.molcel.2011.08.002  0.302
2011 Ferrell JE, Tsai TY, Yang Q. Modeling the cell cycle: why do certain circuits oscillate? Cell. 144: 874-85. PMID 21414480 DOI: 10.1016/J.Cell.2011.03.006  0.749
2011 Trunnell NB, Poon AC, Kim SY, Ferrell JE. Ultrasensitivity in the Regulation of Cdc25C by Cdk1. Molecular Cell. 41: 263-74. PMID 21292159 DOI: 10.1016/J.Molcel.2011.01.012  0.457
2010 Gong D, Ferrell JE. The roles of cyclin A2, B1, and B2 in early and late mitotic events. Molecular Biology of the Cell. 21: 3149-61. PMID 20660152 DOI: 10.1091/Mbc.E10-05-0393  0.405
2010 Wolkenhauer O, Auffray C, Baltrusch S, Blüthgen N, Byrne H, Cascante M, Ciliberto A, Dale T, Drasdo D, Fell D, Ferrell JE, Gallahan D, Gatenby R, Günther U, Harms BD, et al. Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research. 70: 12-3. PMID 20028868 DOI: 10.1158/0008-5472.Can-09-2676  0.232
2009 Ferrell JE. Signaling motifs and Weber's law. Molecular Cell. 36: 724-7. PMID 20005833 DOI: 10.1016/J.Molcel.2009.11.032  0.39
2009 Hendrickson DG, Hogan DJ, McCullough HL, Myers JW, Herschlag D, Ferrell JE, Brown PO. Concordant regulation of translation and mRNA abundance for hundreds of targets of a human microRNA. Plos Biology. 7: e1000238. PMID 19901979 DOI: 10.1371/Journal.Pbio.1000238  0.35
2009 Ferrell JE, Pomerening JR, Kim SY, Trunnell NB, Xiong W, Huang CY, Machleder EM. Simple, realistic models of complex biological processes: positive feedback and bistability in a cell fate switch and a cell cycle oscillator. Febs Letters. 583: 3999-4005. PMID 19878681 DOI: 10.1016/J.Febslet.2009.10.068  0.429
2009 Ferrell JE. Q&A: Cooperativity. Journal of Biology. 8: 53. PMID 19589184 DOI: 10.1186/jbiol157  0.164
2009 Justman QA, Serber Z, Ferrell JE, El-Samad H, Shokat KM. Tuning the activation threshold of a kinase network by nested feedback loops. Science (New York, N.Y.). 324: 509-12. PMID 19390045 DOI: 10.1126/Science.1169498  0.437
2009 Aebersold R, Auffray C, Baney E, Barillot E, Brazma A, Brett C, Brunak S, Butte A, Califano A, Celis J, Cufer T, Ferrell J, Galas D, Gallahan D, Gatenby R, et al. Report on EU-USA workshop: how systems biology can advance cancer research (27 October 2008). Molecular Oncology. 3: 9-17. PMID 19383362 DOI: 10.1016/J.Molonc.2008.11.003  0.354
2009 Ferrell JE. Q&A: systems biology. Journal of Biology. 8: 2. PMID 19222866 DOI: 10.1186/Jbiol107  0.348
2009 Loew GH, Pudzianowski AT, Czerwinski A, Ferrell JE. Mechanistic studies of addition of nucleophiles to arene oxides and diol epoxides: Candidate ultimate carcinogens International Journal of Quantum Chemistry. 18: 223-244. DOI: 10.1002/Qua.560180723  0.323
2008 Santos SD, Ferrell JE. Systems biology: On the cell cycle and its switches. Nature. 454: 288-9. PMID 18633407 DOI: 10.1038/454288A  0.661
2008 Tsai TY, Choi YS, Ma W, Pomerening JR, Tang C, Ferrell JE. Robust, tunable biological oscillations from interlinked positive and negative feedback loops. Science (New York, N.Y.). 321: 126-9. PMID 18599789 DOI: 10.1126/Science.1156951  0.714
2008 Pomerening JR, Ubersax JA, Ferrell JE. Rapid cycling and precocious termination of G1 phase in cells expressing CDK1AF. Molecular Biology of the Cell. 19: 3426-41. PMID 18480403 DOI: 10.1091/Mbc.E08-02-0172  0.495
2008 Hendrickson DG, Hogan DJ, Herschlag D, Ferrell JE, Brown PO. Systematic identification of mRNAs recruited to argonaute 2 by specific microRNAs and corresponding changes in transcript abundance. Plos One. 3: e2126. PMID 18461144 DOI: 10.1371/Journal.Pone.0002126  0.316
2008 Ríos-Cardona D, Ricardo-González RR, Chawla A, Ferrell JE. A role for GPRx, a novel GPR3/6/12-related G-protein coupled receptor, in the maintenance of meiotic arrest in Xenopus laevis oocytes. Developmental Biology. 317: 380-8. PMID 18381211 DOI: 10.1016/J.Ydbio.2008.02.047  0.375
2008 Ferrell JE. Feedback regulation of opposing enzymes generates robust, all-or-none bistable responses. Current Biology : Cb. 18: R244-5. PMID 18364225 DOI: 10.1016/j.cub.2008.02.035  0.264
2008 Hendrickson DG, Hogan DJ, Herschlag D, Ferrell JE, Brown PO. Correction: Systematic Identification of mRNAs Recruited to Argonaute 2 by Specific microRNAs and Corresponding Changes in Transcript Abundance Plos One. 3. DOI: 10.1371/annotation/c8902b4c-30fc-42e7-b506-fc756a3cdd4e  0.22
2007 Poon AC, Ferrell JE. Systems biology. A clock with a flip switch. Science (New York, N.Y.). 318: 757-8. PMID 17975056 DOI: 10.1126/Science.1150740  0.404
2007 Ubersax JA, Ferrell JE. Mechanisms of specificity in protein phosphorylation. Nature Reviews. Molecular Cell Biology. 8: 530-41. PMID 17585314 DOI: 10.1038/Nrm2203  0.47
2007 Kim SY, Ferrell JE. Substrate competition as a source of ultrasensitivity in the inactivation of Wee1. Cell. 128: 1133-45. PMID 17382882 DOI: 10.1016/J.Cell.2007.01.039  0.452
2007 Hansen DV, Pomerening JR, Summers MK, Miller JJ, Ferrell JE, Jackson PK. Emi2 at the crossroads: where CSF meets MPF. Cell Cycle (Georgetown, Tex.). 6: 732-8. PMID 17361104 DOI: 10.4161/Cc.6.6.3937  0.448
2007 Serber Z, Ferrell JE. Tuning bulk electrostatics to regulate protein function. Cell. 128: 441-4. PMID 17289565 DOI: 10.1016/J.Cell.2007.01.018  0.479
2007 Gong D, Pomerening JR, Myers JW, Gustavsson C, Jones JT, Hahn AT, Meyer T, Ferrell JE. Cyclin A2 regulates nuclear-envelope breakdown and the nuclear accumulation of cyclin B1. Current Biology : Cb. 17: 85-91. PMID 17208191 DOI: 10.1016/J.Cub.2006.11.066  0.405
2007 Ubersax JA, Ferrell JE. Erratum: Mechanisms of specificity in protein phosphorylation Nature Reviews Molecular Cell Biology. 8: 670-670. DOI: 10.1038/Nrm2235  0.402
2007 Ferrell JE. Journal club Nature. 450: 5-5. DOI: 10.1038/450005a  0.17
2007 Ferrell JE. A clear view of the cell cycle Current Biology. 17: R231-R232. DOI: 10.1016/J.Cub.2007.02.026  0.478
2006 Myers JW, Chi JT, Gong D, Schaner ME, Brown PO, Ferrell JE. Minimizing off-target effects by using diced siRNAs for RNA interference. Journal of Rnai and Gene Silencing : An International Journal of Rna and Gene Targeting Research. 2: 181-94. PMID 19771225  0.235
2006 Serber Z, Selenko P, Hänsel R, Reckel S, Löhr F, Ferrell JE, Wagner G, Dötsch V. Investigating macromolecules inside cultured and injected cells by in-cell NMR spectroscopy. Nature Protocols. 1: 2701-9. PMID 17406526 DOI: 10.1038/Nprot.2006.181  0.421
2006 Yue J, Ferrell JE. Mechanistic studies of the mitotic activation of Mos. Molecular and Cellular Biology. 26: 5300-9. PMID 16809767 DOI: 10.1128/Mcb.00273-06  0.488
2006 Ubersax JA, Ferrell JE. A noisy 'Start' to the cell cycle. Molecular Systems Biology. 2: 2006.0014. PMID 16738559 DOI: 10.1038/Msb4100056  0.426
2006 Yue J, Xiong W, Ferrell JE. B-Raf and C-Raf are required for Ras-stimulated p42 MAP kinase activation in Xenopus egg extracts. Oncogene. 25: 3307-15. PMID 16434971 DOI: 10.1038/Sj.Onc.1209354  0.457
2005 Kim SY, Song EJ, Lee KJ, Ferrell JE. Multisite M-phase phosphorylation of Xenopus Wee1A. Molecular and Cellular Biology. 25: 10580-90. PMID 16287869 DOI: 10.1128/Mcb.25.23.10580-10590.2005  0.457
2005 Brandman O, Ferrell JE, Li R, Meyer T. Interlinked fast and slow positive feedback loops drive reliable cell decisions. Science (New York, N.Y.). 310: 496-8. PMID 16239477 DOI: 10.1126/Science.1113834  0.398
2005 Pomerening JR, Kim SY, Ferrell JE. Systems-level dissection of the cell-cycle oscillator: bypassing positive feedback produces damped oscillations. Cell. 122: 565-78. PMID 16122424 DOI: 10.1016/J.Cell.2005.06.016  0.45
2005 Liou J, Kim ML, Heo WD, Jones JT, Myers JW, Ferrell JE, Meyer T. STIM is a Ca2+ sensor essential for Ca2+-store-depletion-triggered Ca2+ influx. Current Biology : Cb. 15: 1235-41. PMID 16005298 DOI: 10.1016/J.Cub.2005.05.055  0.358
2005 Myers JW, Ferrell JE. Silencing gene expression with Dicer-generated siRNA pools. Methods in Molecular Biology (Clifton, N.J.). 309: 93-196. PMID 15990400 DOI: 10.1385/1-59259-935-4:093  0.314
2005 Green SL, Westendorf JM, Jaffe H, Pant HC, Cork LC, Ostrander EA, Vignaux F, Ferrell JE. Allelic variants of the canine heavy neurofilament (NFH) subunit and extensive phosphorylation in dogs with motor neuron disease. Journal of Comparative Pathology. 132: 33-50. PMID 15629478 DOI: 10.1016/J.Jcpa.2004.06.003  0.384
2005 Cheng A, Xiong W, Ferrell JE, Solomon MJ. Identification and comparative analysis of multiple mammalian Speedy/Ringo proteins. Cell Cycle (Georgetown, Tex.). 4: 155-65. PMID 15611625 DOI: 10.4161/Cc.4.1.1347  0.472
2005 Myers JW, Ferrell JE. Dicer in RNAi: Its roles in vivo and utility in vitro Rna Interference Technology: From Basic Science to Drug Development. 29-54. DOI: 10.1017/CBO9780511546402.005  0.239
2004 Yue J, Ferrell JE. Mos mediates the mitotic activation of p42 MAPK in Xenopus egg extracts. Current Biology : Cb. 14: 1581-6. PMID 15341746 DOI: 10.1016/J.Cub.2004.08.056  0.472
2004 Gong D, Ferrell JE. Picking a winner: new mechanistic insights into the design of effective siRNAs. Trends in Biotechnology. 22: 451-4. PMID 15331225 DOI: 10.1016/J.Tibtech.2004.07.008  0.331
2004 Jones JT, Myers JW, Ferrell JE, Meyer T. Probing the precision of the mitotic clock with a live-cell fluorescent biosensor. Nature Biotechnology. 22: 306-12. PMID 14990952 DOI: 10.1038/Nbt941  0.423
2004 Angeli D, Ferrell JE, Sontag ED. Detection of multistability, bifurcations, and hysteresis in a large class of biological positive-feedback systems. Proceedings of the National Academy of Sciences of the United States of America. 101: 1822-7. PMID 14766974 DOI: 10.1073/Pnas.0308265100  0.425
2003 Xiong W, Ferrell JE. A positive-feedback-based bistable 'memory module' that governs a cell fate decision. Nature. 426: 460-5. PMID 14647386 DOI: 10.1038/Nature02089  0.512
2003 Fink CC, Bayer KU, Myers JW, Ferrell JE, Schulman H, Meyer T. Selective regulation of neurite extension and synapse formation by the beta but not the alpha isoform of CaMKII. Neuron. 39: 283-97. PMID 12873385 DOI: 10.1016/S0896-6273(03)00428-8  0.352
2003 Pomerening JR, Sontag ED, Ferrell JE. Building a cell cycle oscillator: hysteresis and bistability in the activation of Cdc2. Nature Cell Biology. 5: 346-51. PMID 12629549 DOI: 10.1038/Ncb954  0.493
2003 Ferrell JE, Cimprich KA. Enforced proximity in the function of a famous scaffold. Molecular Cell. 11: 289-91. PMID 12620218 DOI: 10.1016/S1097-2765(03)00055-8  0.399
2003 Bagowski CP, Besser J, Frey CR, Ferrell JE. The JNK cascade as a biochemical switch in mammalian cells: ultrasensitive and all-or-none responses. Current Biology : Cb. 13: 315-20. PMID 12593797 DOI: 10.1016/S0960-9822(03)00083-6  0.446
2003 Myers JW, Jones JT, Meyer T, Ferrell JE. Recombinant Dicer efficiently converts large dsRNAs into siRNAs suitable for gene silencing. Nature Biotechnology. 21: 324-8. PMID 12592410 DOI: 10.1038/Nbt792  0.355
2002 Gilman AG, Simon MI, Bourne HR, Harris BA, Long R, Ross EM, Stull JT, Taussig R, Bourne HR, Arkin AP, Cobb MH, Cyster JG, Devreotes PN, Ferrell JE, Fruman D, et al. Overview of the Alliance for Cellular Signaling. Nature. 420: 703-6. PMID 12478301 DOI: 10.1038/Nature01304  0.747
2002 Ferrell JE. Self-perpetuating states in signal transduction: positive feedback, double-negative feedback and bistability. Current Opinion in Cell Biology. 14: 140-8. PMID 11891111 DOI: 10.1016/S0955-0674(02)00314-9  0.447
2002 Sohaskey ML, Ferrell JE. Activation of p42 mitogen-activated protein kinase (MAPK), but not c-Jun NH(2)-terminal kinase, induces phosphorylation and stabilization of MAPK phosphatase XCL100 in Xenopus oocytes. Molecular Biology of the Cell. 13: 454-68. PMID 11854404 DOI: 10.1091/Mbc.01-11-0553  0.506
2001 Ferrell JE, Xiong W. Bistability in cell signaling: How to make continuous processes discontinuous, and reversible processes irreversible. Chaos (Woodbury, N.Y.). 11: 227-236. PMID 12779456 DOI: 10.1063/1.1349894  0.414
2001 Deshaies RJ, Ferrell JE. Multisite phosphorylation and the countdown to S phase. Cell. 107: 819-22. PMID 11779457 DOI: 10.1016/S0092-8674(01)00620-1  0.433
2001 Ferrell JE. Six steps to destruction. Nature. 414: 498-9. PMID 11734834 DOI: 10.1038/35107180  0.458
2001 Bagowski CP, Ferrell JE. Bistability in the JNK cascade. Current Biology : Cb. 11: 1176-82. PMID 11516948 DOI: 10.1016/S0960-9822(01)00330-X  0.455
2001 Bagowski CP, Myers JW, Ferrell JE. The classical progesterone receptor associates with p42 MAPK and is involved in phosphatidylinositol 3-kinase signaling in Xenopus oocytes. The Journal of Biological Chemistry. 276: 37708-14. PMID 11479298 DOI: 10.1074/Jbc.M104582200  0.44
2001 Bagowski CP, Xiong W, Ferrell JE. c-Jun N-terminal kinase activation in Xenopus laevis eggs and embryos. A possible non-genomic role for the JNK signaling pathway. The Journal of Biological Chemistry. 276: 1459-65. PMID 11029471 DOI: 10.1074/Jbc.M008050200  0.475
2000 Ferrell JE. What do scaffold proteins really do? Science's Stke : Signal Transduction Knowledge Environment. 2000: pe1. PMID 11752612 DOI: 10.1126/Stke.2000.52.Pe1  0.421
2000 Green SL, Lifland BD, Bouley DM, Brown BA, Wallace RJ, Ferrell JE. Disease attributed to Mycobacterium chelonae in South African clawed frogs (Xenopus laevis). Comparative Medicine. 50: 675-9. PMID 11200577  0.196
2000 Kim SY, Ferrell JE, Chae SK, Lee KJ. Inhibition of progesterone-induced Xenopus oocyte maturation by Nm23. Cell Growth & Differentiation : the Molecular Biology Journal of the American Association For Cancer Research. 11: 485-90. PMID 11007453  0.342
2000 Bhatt RR, Ferrell JE. Cloning and characterization of Xenopus Rsk2, the predominant p90 Rsk isozyme in oocytes and eggs. The Journal of Biological Chemistry. 275: 32983-90. PMID 10934212 DOI: 10.1074/Jbc.M006386200  0.475
2000 Walter SA, Guadagno SN, Ferrell JE. Activation of Wee1 by p42 MAPK in vitro and in cycling xenopus egg extracts. Molecular Biology of the Cell. 11: 887-96. PMID 10712507 DOI: 10.1091/Mbc.11.3.887  0.472
1999 Sohaskey ML, Ferrell JE. Distinct, constitutively active MAPK phosphatases function in Xenopus oocytes: implications for p42 MAPK regulation In vivo. Molecular Biology of the Cell. 10: 3729-43. PMID 10564268 DOI: 10.1091/Mbc.10.11.3729  0.47
1999 Bhatt RR, Ferrell JE. The protein kinase p90 rsk as an essential mediator of cytostatic factor activity. Science (New York, N.Y.). 286: 1362-5. PMID 10558991 DOI: 10.1126/Science.286.5443.1362  0.462
1999 Ferrell JE. Building a cellular switch: more lessons from a good egg. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 21: 866-70. PMID 10497337 DOI: 10.1002/(Sici)1521-1878(199910)21:10<866::Aid-Bies9>3.0.Co;2-1  0.399
1999 Ferrell JE. Xenopus oocyte maturation: new lessons from a good egg. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 21: 833-42. PMID 10497333 DOI: 10.1002/(Sici)1521-1878(199910)21:10<833::Aid-Bies5>3.0.Co;2-P  0.465
1999 Green SL, Bouley DM, Tolwani RJ, Waggie KS, Lifland BD, Otto GM, Ferrell JE. Identification and management of an outbreak of Flavobacterium meningosepticum infection in a colony of South African clawed frogs (Xenopus laevis). Journal of the American Veterinary Medical Association. 214: 1833-8, 1792-3. PMID 10382028  0.189
1999 Huang CY, Chang CP, Huang CL, Ferrell JE. M phase phosphorylation of cytoplasmic dynein intermediate chain and p150(Glued). The Journal of Biological Chemistry. 274: 14262-9. PMID 10318847 DOI: 10.1074/Jbc.274.20.14262  0.458
1998 Ferrell JE. How regulated protein translocation can produce switch-like responses. Trends in Biochemical Sciences. 23: 461-5. PMID 9868363 DOI: 10.1016/S0968-0004(98)01316-4  0.473
1998 Guadagno TM, Ferrell JE. Requirement for MAPK activation for normal mitotic progression in Xenopus egg extracts. Science (New York, N.Y.). 282: 1312-5. PMID 9812894 DOI: 10.1126/Science.282.5392.1312  0.482
1998 Ferrell JE, Machleder EM. The biochemical basis of an all-or-none cell fate switch in Xenopus oocytes. Science (New York, N.Y.). 280: 895-8. PMID 9572732 DOI: 10.1126/Science.280.5365.895  0.47
1997 Walter SA, Guadagno TM, Ferrell JE. Induction of a G2-phase arrest in Xenopus egg extracts by activation of p42 mitogen-activated protein kinase. Molecular Biology of the Cell. 8: 2157-69. PMID 9362060 DOI: 10.1091/Mbc.8.11.2157  0.483
1997 Ferrell JE. How responses get more switch-like as you move down a protein kinase cascade. Trends in Biochemical Sciences. 22: 288-9. PMID 9270299 DOI: 10.1016/S0968-0004(97)82217-7  0.447
1997 Ferrell JE, Bhatt RR. Mechanistic studies of the dual phosphorylation of mitogen-activated protein kinase. The Journal of Biological Chemistry. 272: 19008-16. PMID 9228083 DOI: 10.1074/Jbc.272.30.19008  0.474
1997 Wang XM, Zhai Y, Ferrell JE. A role for mitogen-activated protein kinase in the spindle assembly checkpoint in XTC cells. The Journal of Cell Biology. 137: 433-43. PMID 9128253 DOI: 10.1083/Jcb.137.2.433  0.481
1996 Ferrell JE. MAP kinases in mitogenesis and development. Current Topics in Developmental Biology. 33: 1-60. PMID 9138904 DOI: 10.1016/S0070-2153(08)60336-1  0.457
1996 Ferrell JE. Tripping the switch fantastic: how a protein kinase cascade can convert graded inputs into switch-like outputs. Trends in Biochemical Sciences. 21: 460-6. PMID 9009826 DOI: 10.1016/S0968-0004(96)20026-X  0.435
1996 Huang CY, Ferrell JE. Ultrasensitivity in the mitogen-activated protein kinase cascade. Proceedings of the National Academy of Sciences of the United States of America. 93: 10078-83. PMID 8816754 DOI: 10.1073/Pnas.93.19.10078  0.498
1996 Huang CY, Ferrell JE. Dependence of Mos-induced Cdc2 activation on MAP kinase function in a cell-free system. The Embo Journal. 15: 2169-73. PMID 8641282 DOI: 10.1002/J.1460-2075.1996.Tb00570.X  0.474
1994 Hsiao KM, Chou SY, Shih SJ, Ferrell JE. Evidence that inactive p42 mitogen-activated protein kinase and inactive Rsk exist as a heterodimer in vivo. Proceedings of the National Academy of Sciences of the United States of America. 91: 5480-4. PMID 8202512 DOI: 10.1073/Pnas.91.12.5480  0.465
1992 Chou SY, Baichwal V, Ferrell JE. Inhibition of c-Jun DNA binding by mitogen-activated protein kinase. Molecular Biology of the Cell. 3: 1117-30. PMID 1421569  0.382
1991 Ferrell JE, Wu M, Gerhart JC, Martin GS. Cell cycle tyrosine phosphorylation of p34cdc2 and a microtubule-associated protein kinase homolog in Xenopus oocytes and eggs. Molecular and Cellular Biology. 11: 1965-71. PMID 2005892 DOI: 10.1128/mcb.11.4.1965-1971.1991  0.515
1991 Ferrell JE, Martin GS. Assessing activities of blotted protein kinases. Methods in Enzymology. 200: 430-5. PMID 1956329 DOI: 10.1016/0076-6879(91)00159-T  0.454
1990 Ferrell JE, Noble JA, Martin GS, Jacques YV, Bainton DF. Intracellular localization of pp60c-src in human platelets. Oncogene. 5: 1033-6. PMID 1695725  0.385
1990 Ferrell JE, Martin GS. Identification of a 42-kilodalton phosphotyrosyl protein as a serine(threonine) protein kinase by renaturation. Molecular and Cellular Biology. 10: 3020-6. PMID 1692963  0.481
1989 Ferrell JE, Martin GS. Tyrosine-specific protein phosphorylation is regulated by glycoprotein IIb-IIIa in platelets. Proceedings of the National Academy of Sciences of the United States of America. 86: 2234-8. PMID 2928328 DOI: 10.1073/Pnas.86.7.2234  0.523
1989 Ferrell JE, Martin GS. Thrombin stimulates the activities of multiple previously unidentified protein kinases in platelets. The Journal of Biological Chemistry. 264: 20723-9. PMID 2555369  0.472
1988 Ferrell JE, Mitchell KT, Huestis WH. Membrane bilayer balance and platelet shape: morphological and biochemical responses to amphipathic compounds. Biochimica Et Biophysica Acta. 939: 223-37. PMID 3355815 DOI: 10.1016/0005-2736(88)90066-1  0.663
1988 Ferrell JE, Martin GS. Platelet tyrosine-specific protein phosphorylation is regulated by thrombin. Molecular and Cellular Biology. 8: 3603-10. PMID 2464741 DOI: 10.1128/mcb.8.9.3603-3610.1988  0.471
1986 Mitchell KT, Ferrell JE, Huestis WH. Separation of phosphoinositides and other phospholipids by two-dimensional thin-layer chromatography. Analytical Biochemistry. 158: 447-53. PMID 3028208 DOI: 10.1016/0003-2697(86)90574-9  0.644
1986 Truong HT, Ferrell JE, Huestis WH. Sulfhydryl reducing agents and shape regulation in human erythrocytes. Blood. 67: 214-21. PMID 3000479 DOI: 10.1182/Blood.V67.1.214.Bloodjournal671214  0.665
1985 Ferrell JE, Lee KJ, Huestis WH. Lipid transfer between phosphatidylcholine vesicles and human erythrocytes: exponential decrease in rate with increasing acyl chain length. Biochemistry. 24: 2857-64. PMID 4016076 DOI: 10.1021/Bi00333A007  0.64
1985 Loew GH, Poulsen M, Kirkjian E, Ferrell J, Sudhindra BS, Rebagliati M. Computer-assisted mechanistic structure-activity studies: application to diverse classes of chemical carcinogens. Environmental Health Perspectives. 61: 69-96. PMID 3905382 DOI: 10.1289/Ehp.856169  0.322
1985 Ferrell JE, Lee KJ, Huestis WH. Membrane bilayer balance and erythrocyte shape: a quantitative assessment. Biochemistry. 24: 2849-57. PMID 2990533 DOI: 10.1021/Bi00333A006  0.657
1984 Ferrell JE, Huestis WH. Phosphoinositide metabolism and the morphology of human erythrocytes. The Journal of Cell Biology. 98: 1992-8. PMID 6327723 DOI: 10.1083/Jcb.98.6.1992  0.649
1983 Newton AC, Cook SL, Huestis WH, Ferrell JE. Transfer of band 3, the erythrocyte anion transporter, between phospholipid vesicles and cells Biochemistry. 22: 6110-6117. PMID 6661430 DOI: 10.1021/Bi00295A011  0.709
1982 Ferrell JE, Huestis WH. Calcium does not mediate the shape change that follows ATP depletion in human erythrocytes. Biochimica Et Biophysica Acta. 687: 321-8. PMID 6807344 DOI: 10.1016/0005-2736(82)90562-4  0.637
1981 Huestis WH, Nelson MJ, Ferrell JE. Calmodulin-dependent spectrin kinase activity in human erythrocytes. Progress in Clinical and Biological Research. 56: 137-55. PMID 6120520  0.661
1980 Loew G, Poulsen M, Ferrell J, Chaet D. Quantum chemical studies of methylbenz[a]anthracenes: Metabolism and correlations with carcinogenicity Chemico-Biological Interactions. 31: 319-340. PMID 7408039 DOI: 10.1016/0009-2797(80)90020-4  0.339
1979 Loew GH, Sudhindra BS, Ferrell JE. Quantum chemical studies of polycyclic aromatic hydrocarbons and their metabolites: Correlations to carcinogenicity Chemico-Biological Interactions. 26: 75-89. PMID 466745 DOI: 10.1016/0009-2797(79)90094-2  0.347
1979 Nelson MJ, Ferrell JE, Huestis WH. Adrenergic stimulation of membrane protein phosphorylation in human erythrocytes. Biochimica Et Biophysica Acta. 558: 136-40. PMID 91385 DOI: 10.1016/0005-2736(79)90323-7  0.679
1979 Ferrell JE, Loew GH. Mechanistic studies of arene oxide and diol epoxide rearrangement and hydrolysis reactions Journal of the American Chemical Society. 101: 1385-1388. DOI: 10.1021/Ja00500A005  0.302
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