Michael T. Zimmermann, Ph.D. - Publications

2011 Biochemistry, Biophysics, and Molecular Biology Iowa State University, Ames, IA, United States 
Bioinformatics Biology, General Biophysics

21 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Rahmani B, Zimmermann MT, Grill DE, Kennedy RB, Oberg AL, White BC, Poland GA, McKinney BA. Recursive Indirect-Paths Modularity (RIP-M) for Detecting Community Structure in RNA-Seq Co-expression Networks. Frontiers in Genetics. 7: 80. PMID 27242890 DOI: 10.3389/fgene.2016.00080  0.76
2016 Long PA, Zimmermann MT, Kim M, Evans JM, Xu X, Olson TM. De novo RRAGC mutation activates mTORC1 signaling in syndromic fetal dilated cardiomyopathy. Human Genetics. PMID 27234373 DOI: 10.1007/s00439-016-1685-3  0.76
2016 Huang J, Eilbeck K, Smith B, Blake JA, Dou D, Huang W, Natale DA, Ruttenberg A, Huan J, Zimmermann MT, Jiang G, Lin Y, Wu B, Strachan HJ, He Y, et al. The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the unification of non-coding RNA biology. Journal of Biomedical Semantics. 7: 24. PMID 27152146 DOI: 10.1186/s13326-016-0066-0  0.76
2016 Zimmermann MT, Jia K, Jernigan RL. Ribosome Mechanics Informs about Mechanism. Journal of Molecular Biology. 428: 802-10. PMID 26687034 DOI: 10.1016/j.jmb.2015.12.003  0.76
2015 Theis JL, Zimmermann MT, Evans JM, Eckloff BW, Wieben ED, Qureshi MY, O'Leary PW, Olson TM. Recessive MYH6 Mutations in Hypoplastic Left Heart with Reduced Ejection Fraction. Circulation. Cardiovascular Genetics. PMID 26085007 DOI: 10.1161/CIRCGENETICS.115.001070  0.76
2014 Theis JL, Zimmermann MT, Larsen BT, Rybakova IN, Long PA, Evans JM, Middha S, de Andrade M, Moss RL, Wieben ED, Michels VV, Olson TM. TNNI3K mutation in familial syndrome of conduction system disease, atrial tachyarrhythmia and dilated cardiomyopathy. Human Molecular Genetics. 23: 5793-804. PMID 24925317 DOI: 10.1093/hmg/ddu297  0.76
2014 Giri K, Shameer K, Zimmermann MT, Saha S, Chakraborty PK, Sharma A, Arvizo RR, Madden BJ, Mccormick DJ, Kocher JP, Bhattacharya R, Mukherjee P. Understanding protein-nanoparticle interaction: a new gateway to disease therapeutics. Bioconjugate Chemistry. 25: 1078-90. PMID 24831101 DOI: 10.1021/bc500084f  0.76
2014 Zimmermann MT, Jernigan RL. Elastic network models capture the motions apparent within ensembles of RNA structures. Rna (New York, N.Y.). 20: 792-804. PMID 24759093 DOI: 10.1261/rna.041269.113  0.76
2014 Dasari S, Theis JD, Vrana JA, Zenka RM, Zimmermann MT, Kocher JP, Highsmith WE, Kurtin PJ, Dogan A. Clinical proteome informatics workbench detects pathogenic mutations in hereditary amyloidoses. Journal of Proteome Research. 13: 2352-8. PMID 24650283 DOI: 10.1021/pr4011475  0.76
2014 Rashin AA, Domagalski MJ, Zimmermann MT, Minor W, Chruszcz M, Jernigan RL. Factors correlating with significant differences between X-ray structures of myoglobin. Acta Crystallographica. Section D, Biological Crystallography. 70: 481-91. PMID 24531482 DOI: 10.1107/S1399004713028812  0.76
2014 Afonin KA, Kasprzak W, Bindewald E, Puppala PS, Diehl AR, Hall KT, Kim TJ, Zimmermann MT, Jernigan RL, Jaeger L, Shapiro BA. Computational and experimental characterization of RNA cubic nanoscaffolds. Methods (San Diego, Calif.). 67: 256-65. PMID 24189588 DOI: 10.1016/j.ymeth.2013.10.013  0.76
2013 Gu Y, Sun W, Wang G, Zimmermann MT, Jernigan RL, Fang N. Revealing rotational modes of functionalized gold nanorods on live cell membranes. Small (Weinheim An Der Bergstrasse, Germany). 9: 785-92. PMID 23124917 DOI: 10.1002/smll.201201808  0.76
2012 Burton B, Zimmermann MT, Jernigan RL, Wang Y. A computational investigation on the connection between dynamics properties of ribosomal proteins and ribosome assembly. Plos Computational Biology. 8: e1002530. PMID 22654657 DOI: 10.1371/journal.pcbi.1002530  0.76
2012 Zimmermann MT, Leelananda SP, Kloczkowski A, Jernigan RL. Combining statistical potentials with dynamics-based entropies improves selection from protein decoys and docking poses. The Journal of Physical Chemistry. B. 116: 6725-31. PMID 22490366 DOI: 10.1021/jp2120143  0.76
2012 Skliros A, Zimmermann MT, Chakraborty D, Saraswathi S, Katebi AR, Leelananda SP, Kloczkowski A, Jernigan RL. The importance of slow motions for protein functional loops. Physical Biology. 9: 014001. PMID 22314977 DOI: 10.1088/1478-3975/9/1/014001  0.76
2011 Zimmermann MT, Skliros A, Kloczkowski A, Jernigan RL. Immunoglobulin Structure Exhibits Control over CDR Motion. Immunome Research. 7. PMID 25191522  0.76
2011 Zimmermann MT, Kloczkowski A, Jernigan RL. MAVENs: motion analysis and visualization of elastic networks and structural ensembles. Bmc Bioinformatics. 12: 264. PMID 21711533 DOI: 10.1186/1471-2105-12-264  0.76
2011 Zimmermann MT, Leelananda SP, Gniewek P, Feng Y, Jernigan RL, Kloczkowski A. Free energies for coarse-grained proteins by integrating multibody statistical contact potentials with entropies from elastic network models. Journal of Structural and Functional Genomics. 12: 137-47. PMID 21674234 DOI: 10.1007/s10969-011-9113-3  0.76
2011 Steczkiewicz K, Zimmermann MT, Kurcinski M, Lewis BA, Dobbs D, Kloczkowski A, Jernigan RL, Kolinski A, Ginalski K. Human telomerase model shows the role of the TEN domain in advancing the double helix for the next polymerization step. Proceedings of the National Academy of Sciences of the United States of America. 108: 9443-8. PMID 21606328 DOI: 10.1073/pnas.1015399108  0.76
2011 Su CC, Long F, Zimmermann MT, Rajashankar KR, Jernigan RL, Yu EW. Crystal structure of the CusBA heavy-metal efflux complex of Escherichia coli. Nature. 470: 558-62. PMID 21350490 DOI: 10.1038/nature09743  0.76
2010 Long F, Su CC, Zimmermann MT, Boyken SE, Rajashankar KR, Jernigan RL, Yu EW. Crystal structures of the CusA efflux pump suggest methionine-mediated metal transport. Nature. 467: 484-8. PMID 20865003 DOI: 10.1038/nature09395  0.76
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