Jed W. Pitera - Publications

Affiliations: 
1999 Pharmaceutical Chemistry University of California, San Francisco, San Francisco, CA 

15 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2014 Doerk GS, Cheng JY, Singh G, Rettner CT, Pitera JW, Balakrishnan S, Arellano N, Sanders DP. Enabling complex nanoscale pattern customization using directed self-assembly. Nature Communications. 5: 5805. PMID 25512171 DOI: 10.1038/ncomms6805  0.36
2014 Sunday DF, Hammond MR, Wang C, Wu WL, Delongchamp DM, Tjio M, Cheng JY, Pitera JW, Kline RJ. Determination of the internal morphology of nanostructures patterned by directed self assembly. Acs Nano. 8: 8426-37. PMID 25075449 DOI: 10.1021/nn5029289  0.36
2014 Tsai H, Pitera JW, Miyazoe H, Bangsaruntip S, Engelmann SU, Liu CC, Cheng JY, Bucchignano JJ, Klaus DP, Joseph EA, Sanders DP, Colburn ME, Guillorn MA. Two-dimensional pattern formation using graphoepitaxy of PS-b-PMMA block copolymers for advanced FinFET device and circuit fabrication. Acs Nano. 8: 5227-32. PMID 24670216 DOI: 10.1021/nn501300b  0.36
2013 Dai Q, Chen Y, Liu CC, Rettner CT, Holmdahl B, Gleixner S, Chung R, Pitera JW, Cheng J, Nelson A. Programmable nanoparticle ensembles via high-throughput directed self-assembly. Langmuir : the Acs Journal of Surfaces and Colloids. 29: 3567-74. PMID 23458256 DOI: 10.1021/la4000457  0.36
2013 Doerk GS, Liu CC, Cheng JY, Rettner CT, Pitera JW, Krupp LE, Topuria T, Arellano N, Sanders DP. Pattern placement accuracy in block copolymer directed self-assembly based on chemical epitaxy. Acs Nano. 7: 276-85. PMID 23199006 DOI: 10.1021/nn303974j  0.36
2009 Chong LT, Pitera JW, Swope WC, Pande VS. Comparison of computational approaches for predicting the effects of missense mutations on p53 function. Journal of Molecular Graphics & Modelling. 27: 978-82. PMID 19168381 DOI: 10.1016/j.jmgm.2008.12.006  0.36
2008 Pitera JW, Swope WC, Abraham FF. Observation of noncooperative folding thermodynamics in simulations of 1BBL. Biophysical Journal. 94: 4837-46. PMID 18326644 DOI: 10.1529/biophysj.107.123265  0.36
2007 Chodera JD, Swope WC, Pitera JW, Seok C, Dill KA. Use of the Weighted Histogram Analysis Method for the Analysis of Simulated and Parallel Tempering Simulations. Journal of Chemical Theory and Computation. 3: 26-41. PMID 26627148 DOI: 10.1021/ct0502864  0.36
2007 Srinivas G, Swope WC, Pitera JW. Interfacial fluctuations of block copolymers: a coarse-grain molecular dynamics simulation study. The Journal of Physical Chemistry. B. 111: 13734-42. PMID 18020436 DOI: 10.1021/jp073347y  0.36
2006 Pitera JW, Haque I, Swope WC. Absence of reptation in the high-temperature folding of the trpzip2 beta-hairpin peptide. The Journal of Chemical Physics. 124: 141102. PMID 16626172 DOI: 10.1063/1.2190226  0.36
2006 Chong LT, Swope WC, Pitera JW, Pande VS. Kinetic computational alanine scanning: application to p53 oligomerization. Journal of Molecular Biology. 357: 1039-49. PMID 16457841 DOI: 10.1016/j.jmb.2005.12.083  0.36
2005 Horn HW, Swope WC, Pitera JW. Characterization of the TIP4P-Ew water model: vapor pressure and boiling point. The Journal of Chemical Physics. 123: 194504. PMID 16321097 DOI: 10.1063/1.2085031  0.36
2004 Horn HW, Swope WC, Pitera JW, Madura JD, Dick TJ, Hura GL, Head-Gordon T. Development of an improved four-site water model for biomolecular simulations: TIP4P-Ew. The Journal of Chemical Physics. 120: 9665-78. PMID 15267980 DOI: 10.1063/1.1683075  0.36
2004 Yang WY, Pitera JW, Swope WC, Gruebele M. Heterogeneous folding of the trpzip hairpin: full atom simulation and experiment. Journal of Molecular Biology. 336: 241-51. PMID 14741219 DOI: 10.1016/j.jmb.2003.11.033  0.36
2003 Pitera JW, Swope W. Understanding folding and design: Replica-exchange simulations of "Trp-cage" miniproteins Proceedings of the National Academy of Sciences of the United States of America. 100: 7587-7592. PMID 12808142 DOI: 10.1073/pnas.1330954100  0.36
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