Elizabeth B. Keller - Related publications

Biochemistry Cornell University, Ithaca, NY, United States 
transfer RNA
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Schirman D, Yakhini Z, Pilpel Y, Dahan O. A broad analysis of splicing regulation in yeast using a large library of synthetic introns. Plos Genetics. 17: e1009805. PMID 34570750 DOI: 10.1371/journal.pgen.1009805   
2021 Jeon HJ, Lee Y, N MPA, Wang X, Chattoraj DK, Lim HM. sRNA-mediated regulation of gal mRNA in E. coli: Involvement of transcript cleavage by RNase E together with Rho-dependent transcription termination. Plos Genetics. 17: e1009878. PMID 34710092 DOI: 10.1371/journal.pgen.1009878   
2021 Finet O, Yague-Sanz C, Krüger LK, Tran P, Migeot V, Louski M, Nevers A, Rougemaille M, Sun J, Ernst FGM, Wacheul L, Wery M, Morillon A, Dedon P, Lafontaine DLJ, et al. Transcription-wide mapping of dihydrouridine reveals that mRNA dihydrouridylation is required for meiotic chromosome segregation. Molecular Cell. PMID 34798057 DOI: 10.1016/j.molcel.2021.11.003   
2021 Webster MW, Weixlbaumer A. Macromolecular assemblies supporting transcription-translation coupling. Transcription. 1-23. PMID 34570660 DOI: 10.1080/21541264.2021.1981713   
2021 Mohanty BK, Kushner SR. Regulation of mRNA decay in . Critical Reviews in Biochemistry and Molecular Biology. 1-25. PMID 34547957 DOI: 10.1080/10409238.2021.1968784   
2021 Shah A, Mittleman BE, Gilad Y, Li YI. Benchmarking sequencing methods and tools that facilitate the study of alternative polyadenylation. Genome Biology. 22: 291. PMID 34649612 DOI: 10.1186/s13059-021-02502-z   
2021 Yang M, Chen J, Li X, Huang J, Wang Q, Wang S, Wei S, Qin Q. The transcription factor NFYC positively regulates expression of MHCIa in the red-spotted grouper (Epinephelus akaara). Developmental and Comparative Immunology. 104272. PMID 34600022 DOI: 10.1016/j.dci.2021.104272   
2021 Palacio M, Taatjes DJ. Merging Established Mechanisms with New Insights: Condensates, Hubs, and the Regulation of RNA Polymerase II Transcription. Journal of Molecular Biology. 167216. PMID 34474085 DOI: 10.1016/j.jmb.2021.167216   
2021 Santiago J, Silva JV, Howl J, Santos MAS, Fardilha M. All you need to know about sperm RNAs. Human Reproduction Update. PMID 34624094 DOI: 10.1093/humupd/dmab034   
2021 Talyan S, Andrade-Navarro MA, Muro EM. A Methodology to Study Pseudogenized lincRNAs. Methods in Molecular Biology (Clifton, N.J.). 2324: 49-63. PMID 34165708 DOI: 10.1007/978-1-0716-1503-4_4   
2021 Mercer M, Jang S, Ni C, Buszczak M. The Dynamic Regulation of mRNA Translation and Ribosome Biogenesis During Germ Cell Development and Reproductive Aging. Frontiers in Cell and Developmental Biology. 9: 710186. PMID 34805139 DOI: 10.3389/fcell.2021.710186   
2021 Wong J, Martelly W, Sharma S. A Reporter Based Cellular Assay for Monitoring Splicing Efficiency. Journal of Visualized Experiments : Jove. PMID 34605821 DOI: 10.3791/63014   
2021 Chin A, Lécuyer E. Puromycin Labeling Coupled with Proximity Ligation Assays to Define Sites of mRNA Translation in Drosophila Embryos and Human Cells. Methods in Molecular Biology (Clifton, N.J.). 2381: 267-284. PMID 34590282 DOI: 10.1007/978-1-0716-1740-3_15   
2021 Appel LM, Franke V, Bruno M, Grishkovskaya I, Kasiliauskaite A, Kaufmann T, Schoeberl UE, Puchinger MG, Kostrhon S, Ebenwaldner C, Sebesta M, Beltzung E, Mechtler K, Lin G, Vlasova A, et al. PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC. Nature Communications. 12: 6078. PMID 34667177 DOI: 10.1038/s41467-021-26360-2   
2021 Dhungel BP, Monteuuis G, Giardina C, Tabar MS, Feng Y, Metierre C, Ho S, Nagarajah R, Fontaine ARM, Shah JS, Gokal D, Bailey CG, Schmitz U, Rasko JEJ. The Fusion of and Arises from a -Splicing Event in Normal and Transformed Human Cells. International Journal of Molecular Sciences. 22. PMID 34830054 DOI: 10.3390/ijms222212178   
2021 Bai W, Wells ML, Lai WS, Hicks SN, Burkholder AB, Perera L, Kimmel AR, Blackshear PJ. A post-transcriptional regulon controlled by TtpA, the single tristetraprolin family member expressed in Dictyostelium discoideum. Nucleic Acids Research. PMID 34718768 DOI: 10.1093/nar/gkab983   
2021 Wright G, Rodriguez A, Li J, Milenkovic T, Emrich SJ, Clark PL. CHARMING: Harmonizing synonymous codon usage to replicate a desired codon usage pattern. Protein Science : a Publication of the Protein Society. PMID 34738275 DOI: 10.1002/pro.4223   
2021 Sun QX, Huang XN, Pan Y, Yao CL. Promoter analysis of TLR5M and TLR5S revealed NF-κB might be a conserved cis-element in TLR5S promoter of large yellow croaker. Comparative Biochemistry and Physiology. Part B, Biochemistry & Molecular Biology. 257: 110675. PMID 34637922 DOI: 10.1016/j.cbpb.2021.110675   
2021 Tian L, Jabbari JS, Thijssen R, Gouil Q, Amarasinghe SL, Voogd O, Kariyawasam H, Du MRM, Schuster J, Wang C, Su S, Dong X, Law CW, Lucattini A, Prawer YDJ, et al. Comprehensive characterization of single-cell full-length isoforms in human and mouse with long-read sequencing. Genome Biology. 22: 310. PMID 34763716 DOI: 10.1186/s13059-021-02525-6   
2021 Thompson SRL, Lee DK, Lachance MA, Smith DR. Mutational Effects of Mobile Introns on the Mitochondrial Genomes of Yeasts. Frontiers in Genetics. 12: 785218. PMID 34804133 DOI: 10.3389/fgene.2021.785218   
2021 Kusnadi EP, Timpone C, Topisirovic I, Larsson O, Furic L. Regulation of gene expression via translational buffering. Biochimica Et Biophysica Acta. Molecular Cell Research. 1869: 119140. PMID 34599983 DOI: 10.1016/j.bbamcr.2021.119140   
2021 Mendez AS, Ly M, González-Sánchez AM, Hartenian E, Ingolia NT, Cate JH, Glaunsinger BA. The N-terminal domain of SARS-CoV-2 nsp1 plays key roles in suppression of cellular gene expression and preservation of viral gene expression. Cell Reports. 109841. PMID 34624207 DOI: 10.1016/j.celrep.2021.109841   
2021 Daouda T, Dumont-Lagacé M, Feghaly A, Benslimane Y, Panes R, Courcelles M, Benhammadi M, Harrington L, Thibault P, Major F, Bengio Y, Gagnon É, Lemieux S, Perreault C. CAMAP: Artificial neural networks unveil the role of codon arrangement in modulating MHC-I peptides presentation. Plos Computational Biology. 17: e1009482. PMID 34679099 DOI: 10.1371/journal.pcbi.1009482   
2021 Wang Y, Sun L, Wang L, Yu H, Yu X, Zou Y. modulates trophoblast cell proliferation and migration through . Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. 1-6. PMID 34734756 DOI: 10.1139/bcb-2021-0044   
2021 Zinshteyn B, Sinha NK, Enam SU, Koleske B, Green R. Translational repression of NMD targets by GIGYF2 and EIF4E2. Plos Genetics. 17: e1009813. PMID 34665823 DOI: 10.1371/journal.pgen.1009813   
2021 Zhang J, Zhang G, Miao Y. Identification, Molecular Characterization, and Tissue Expression Profiles of Three Genes from Water Buffalo (). Genes. 12. PMID 34680931 DOI: 10.3390/genes12101536   
2021 Wu ZW, Mou Q, Fang T, Wang Y, Liang H, Wang C, Du ZQ, Yang CX. Global 3'-UTR landscape mediated by alternative polyadenylation during meiotic maturation of pig oocytes. Reproduction in Domestic Animals = Zuchthygiene. PMID 34647356 DOI: 10.1111/rda.14026   
2021 Wai AH, Cho LH, Peng X, Waseem M, Lee DJ, Lee JM, Kim CK, Chung MY. Genome-wide identification and expression profiling of Alba gene family members in response to abiotic stress in tomato (Solanum lycopersicum L.). Bmc Plant Biology. 21: 530. PMID 34772358 DOI: 10.1186/s12870-021-03310-0   
2021 Glock C, Biever A, Tushev G, Nassim-Assir B, Kao A, Bartnik I, Tom Dieck S, Schuman EM. The translatome of neuronal cell bodies, dendrites, and axons. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34670838 DOI: 10.1073/pnas.2113929118   
2021 Chen T, Xu R, Sheng N, Che S, Zhu L, Liu F, Su S, Ding S, Li X. Molecular evidence for farnesoic acid O-methyltransferase (FAMeT) involved in the biosynthesis of vitellogenin in the Chinese mitten crab Eriocheir sinensis. Animal Reproduction Science. 234: 106868. PMID 34607186 DOI: 10.1016/j.anireprosci.2021.106868   
2021 Napoli RS, Allen PJ, Parish RW, Li SF. The MYB5 transcription factor interacts with CASEIN KINASE2 BETA3 subunit in a yeast two-hybrid system. Micropublication Biology. 2021. PMID 34723145 DOI: 10.17912/micropub.biology.000486   
2021 Górska AA, Sandmann C, Riechert E, Hofmann C, Malovrh E, Varma E, Kmietczyk V, Ölschläger J, Jürgensen L, Kamuf-Schenk V, Stroh C, Furkel J, Konstandin MH, Sticht C, Boileau E, et al. Muscle-specific Cand2 is translationally upregulated by mTORC1 and promotes adverse cardiac remodeling. Embo Reports. e52170. PMID 34605609 DOI: 10.15252/embr.202052170   
2021 Ren X, Zhi L, Liu L, Meng D, Su Q, Batool A, Ji J, Song L, Zhang N, Guo L, Liu X, Li J, Zhang W. Alternative Splicing of Differentially Regulates Grain Weight and Size in Bread Wheat. International Journal of Molecular Sciences. 22. PMID 34769129 DOI: 10.3390/ijms222111692   
2021 Kashkan I, Hrtyan M, Retzer K, Humpolíčková J, Jayasree A, Filepová R, Vondráková Z, Simon S, Rombaut D, Jacobs TB, Frilander MJ, Hejátko J, Friml J, Petrášek J, Růžička K. Mutually opposing activity of PIN7 splicing isoforms is required for auxin-mediated tropic responses in Arabidopsis thaliana. The New Phytologist. PMID 34637542 DOI: 10.1111/nph.17792   
2021 Cho SY, Jung SJ, Kim KD, Roe JH. Non-mitochondrial aconitase regulates the expression of iron-uptake genes by controlling the RNA turnover process in fission yeast. Journal of Microbiology (Seoul, Korea). PMID 34705258 DOI: 10.1007/s12275-021-1438-4   
2021 Laliotis GI, Kenney AD, Chavdoula E, Orlacchio A, Kaba A, La Ferlita A, Anastas V, Tsatsanis C, Beane JD, Sehgal L, Coppola V, Yount JS, Tsichlis PN. Phosphor-IWS1-dependent U2AF2 splicing regulates trafficking of CAR-E-positive intronless gene mRNAs and sensitivity to viral infection. Communications Biology. 4: 1179. PMID 34635782 DOI: 10.1038/s42003-021-02668-z   
2021 Gu X, Schafer NP, Wolynes PG. Vectorial channeling as a mechanism for translational control by functional prions and condensates. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34795061 DOI: 10.1073/pnas.2115904118   
2021 Missios P, da Rocha EL, Pearson DS, Philipp J, Aleman MM, Pirouz M, Farache D, Franses JW, Kubaczka C, Tsanov KM, Jha DK, Pepe-Mooney B, Powers JT, Gregory RI, Lee AS, et al. LIN28B alters ribosomal dynamics to promote metastasis in MYCN-driven malignancy. The Journal of Clinical Investigation. 131. PMID 34779407 DOI: 10.1172/JCI145142   
2021 Neault N, O'Reilly S, Baig AT, Plaza-Diaz J, Azimi M, Farooq F, Baird SD, MacKenzie A. High-throughput kinome-RNAi screen identifies protein kinase R activator (PACT) as a novel genetic modifier of CUG foci integrity in myotonic dystrophy type 1 (DM1). Plos One. 16: e0256276. PMID 34520479 DOI: 10.1371/journal.pone.0256276   
2021 Reyer MA, Chennakesavalu S, Heideman EM, Ma X, Bujnowska M, Hong L, Dinner AR, Vanderpool CK, Fei J. Kinetic modeling reveals additional regulation at co-transcriptional level by post-transcriptional sRNA regulators. Cell Reports. 36: 109764. PMID 34592145 DOI: 10.1016/j.celrep.2021.109764   
2021 Singh P, Heer M, Resteu A, Mikulasova A, Reza M, Largeaud L, Dufrechou S, Prade N, Dickinson RE, Bustamante J, Neven B, Bigley V, Delabesse E, Rico D, Pasquet M, et al. GATA2 deficiency phenotype associated with tandem duplication GATA2 and over-expression of GATA2-AS1. Blood Advances. PMID 34638133 DOI: 10.1182/bloodadvances.2021005217   
2021 von Elsner L, Chai G, Schneeberger PE, Harms FL, Casar C, Qi M, Alawi M, Abdel-Salam GMH, Zaki MS, Arndt F, Yang X, Stanley V, Hempel M, Gleeson JG, Kutsche K. Biallelic FRA10AC1 variants cause a neurodevelopmental disorder with growth retardation. Brain : a Journal of Neurology. PMID 34694367 DOI: 10.1093/brain/awab403   
2021 Lin C, Feng Y, Peng X, Wu J, Wang W, Liu Y. U2.3 Precursor Small Nuclear RNA Processing Assay. Bio-Protocol. 11: e4142. PMID 34604448 DOI: 10.21769/BioProtoc.4142   
2021 Bertrand RE, Wang J, Li Y, Cheng X, Wang K, Stoilov P, Chen R. Cwc27, associated with retinal degeneration, functions as a splicing factor in vivo. Human Molecular Genetics. PMID 34726245 DOI: 10.1093/hmg/ddab319   
2021 Florea L, Payer L, Antonescu C, Yang G, Burns K. Detection of Exonization Events in Human Frontal Cortex From RNA-Seq Data. Frontiers in Molecular Biosciences. 8: 727537. PMID 34568430 DOI: 10.3389/fmolb.2021.727537   
2021 Jang JS, Holicky E, Lau J, McDonough S, Mutawe M, Koster MJ, Warrington KJ, Cuninngham JM. Application of the 3' mRNA-Seq using unique molecular identifiers in highly degraded RNA derived from formalin-fixed, paraffin-embedded tissue. Bmc Genomics. 22: 759. PMID 34689749 DOI: 10.1186/s12864-021-08068-1   
2021 Abbas MN, Kausar S, Gul I, Ke XX, Dong Z, Lu X, Cui H. Suppressor of cytokine signalling 6 is a potential regulator of antimicrobial peptides in the Chinese oak silkworm, Antheraea pernyi. Molecular Immunology. 140: 12-21. PMID 34628136 DOI: 10.1016/j.molimm.2021.10.001   
2021 Shi B, Song Q, Luo X, Song J, Xia D, Xia Z, Liu M, Wang W, Wang R, Du H, Han J. Identification of cryptic putative IRESs within the ORF encoding the nonstructural proteins of the human rhinovirus 16 genome. Archives of Virology. PMID 34608523 DOI: 10.1007/s00705-021-05209-5   
2021 Li Y, Li J, Wang J, Lynch DR, Shen X, R Corey D, Parekh D, Bhat B, Woo C, Cherry JJ, Napierala JS, Napierala M. Targeting 3' and 5' untranslated regions with antisense oligonucleotides to stabilize frataxin mRNA and increase protein expression. Nucleic Acids Research. PMID 34718736 DOI: 10.1093/nar/gkab954   
2021 Herbert CJ, Labarre-Mariotte S, Cornu D, Sophie C, Panozzo C, Michel T, Dujardin G, Bonnefoy N. Translational activators and mitoribosomal isoforms cooperate to mediate mRNA-specific translation in Schizosaccharomyces pombe mitochondria. Nucleic Acids Research. PMID 34634819 DOI: 10.1093/nar/gkab789