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Takumi Yamaguchi - Publications

Affiliations: 
Department of Applied Chemistry University of Tokyo, Bunkyō-ku, Tōkyō-to, Japan 
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36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Horiuchi S, Yamaguchi T, Tessarolo J, Tanaka H, Sakuda E, Arikawa Y, Meggers E, Clever GH, Umakoshi K. Symmetry-breaking host-guest assembly in a hydrogen-bonded supramolecular system. Nature Communications. 14: 155. PMID 36631447 DOI: 10.1038/s41467-023-35850-4  0.324
2022 Kato K, Yamaguchi T, Yagi-Utsumi M. Experimental and computational characterization of dynamic biomolecular interaction systems involving glycolipid glycans. Glycoconjugate Journal. PMID 35298725 DOI: 10.1007/s10719-022-10056-w  0.314
2020 Yamaguchi T. Delineating the Dynamic Conformations of Oligosaccharides by Combining Molecular Simulation and NMR Spectroscopy Trends in Glycoscience and Glycotechnology. 32: E93-E98. DOI: 10.4052/Tigg.2013.2E  0.35
2019 Suzuki T, Yanaka S, Watanabe T, Yan G, Satoh T, Yagi H, Yamaguchi T, Kato K. Remodeling of the oligosaccharide conformational space in the prebound state to improve lectin-binding affinity. Biochemistry. PMID 31553574 DOI: 10.1021/Acs.Biochem.9B00594  0.318
2019 Yanaka S, Yogo R, Inoue R, Sugiyama M, Itoh SG, Okumura H, Miyanoiri Y, Yagi H, Satoh T, Yamaguchi T, Kato K. Dynamic Views of the Fc Region of Immunoglobulin G Provided by Experimental and Computational Observations. Antibodies (Basel, Switzerland). 8. PMID 31544845 DOI: 10.3390/Antib8030039  0.389
2018 Yamaguchi T, Kato K. Molecular Dynamics of Gangliosides. Methods in Molecular Biology (Clifton, N.J.). 1804: 411-417. PMID 29926421 DOI: 10.1007/978-1-4939-8552-4_20  0.346
2018 YAMAGUCHI T, WATANABE T, YAGI H, KATO K. Exploration of Conformational Spaces of Oligosaccharides byCombining Molecular Dynamics Simulation and NMR Spectroscopy Journal of Computer Chemistry, Japan. 17: 1-7. DOI: 10.2477/Jccj.2018-0011  0.332
2017 Sakae Y, Satoh T, Yagi H, Yanaka S, Yamaguchi T, Isoda Y, Iida S, Okamoto Y, Kato K. Conformational effects of N-glycan core fucosylation of immunoglobulin G Fc region on its interaction with Fcγ receptor IIIa. Scientific Reports. 7: 13780. PMID 29062024 DOI: 10.1038/S41598-017-13845-8  0.329
2017 Yan G, Yamaguchi T, Suzuki T, Yanaka S, Sato S, Fujita M, Kato K. Hyper-assembly of self-assembled glycoclusters mediated by specific carbohydrate-carbohydrate interactions. Chemistry, An Asian Journal. PMID 28317269 DOI: 10.1002/Asia.201700202  0.549
2016 Suzuki T, Kajino M, Yanaka S, Zhu T, Yagi H, Satoh T, Yamaguchi T, Kato K. Conformational analysis of a high-mannose-type oligosaccharide displaying glucosyl determinant recognized by molecular chaperones using NMR-validated molecular dynamics simulation. Chembiochem : a European Journal of Chemical Biology. PMID 27995699 DOI: 10.1002/Cbic.201600595  0.364
2016 Satoh T, Toshimori T, Yan G, Yamaguchi T, Kato K. Structural basis for two-step glucose trimming by glucosidase II involved in ER glycoprotein quality control. Scientific Reports. 6: 20575. PMID 26847925 DOI: 10.1038/Srep20575  0.326
2016 Seetaha S, Yagi-Utsumi M, Yamaguchi T, Ishii K, Hannongbua S, Choowongkomon K, Kato K. Application of Site-Specific Spin Labeling for NMR Detecting Inhibitor-Induced Conformational Change of HIV-1 Reverse Transcriptase. Chemmedchem. 11: 363-6. PMID 26804978 DOI: 10.1002/Cmdc.201500554  0.301
2015 Kato K, Yamaguchi T. Paramagnetic NMR probes for characterization of the dynamic conformations and interactions of oligosaccharides. Glycoconjugate Journal. 32: 505-13. PMID 26050258 DOI: 10.1007/S10719-015-9599-1  0.372
2015 Sato S, Yoshimasa Y, Fujita D, Yagi-Utsumi M, Yamaguchi T, Kato K, Fujita M. Self-Assembled Spherical Complex Displaying a Gangliosidic Glycan Cluster Capable of Interacting with Amyloidogenic Proteins. Angewandte Chemie (International Ed. in English). PMID 26015171 DOI: 10.1002/Anie.201501981  0.49
2015 Satoh T, Yamaguchi T, Kato K. Emerging structural insights into glycoprotein quality control coupled with N-glycan processing in the endoplasmic reticulum. Molecules (Basel, Switzerland). 20: 2475-91. PMID 25647580 DOI: 10.3390/Molecules20022475  0.363
2015 Sato S, Takeuchi R, Yagi-Utsumi M, Yamaguchi T, Yamaguchi Y, Kato K, Fujita M. A self-assembled, π-stacked complex as a finely-tunable magnetic aligner for biomolecular NMR applications. Chemical Communications (Cambridge, England). 51: 2540-3. PMID 25567666 DOI: 10.1039/C4Cc09354B  0.524
2015 Zhang Y, Yamaguchi T, Satoh T, Yagi-Utsumi M, Kamiya Y, Sakae Y, Okamoto Y, Kato K. Conformational dynamics of oligosaccharides characterized by paramagnetism-assisted NMR spectroscopy in conjunction with molecular dynamics simulation. Advances in Experimental Medicine and Biology. 842: 217-30. PMID 25408346 DOI: 10.1007/978-3-319-11280-0_14  0.388
2015 Yagi H, Zhang Y, Yagi-Utsumi M, Yamaguchi T, Iida S, Yamaguchi Y, Kato K. Backbone (1)H, (13)C, and (15)N resonance assignments of the Fc fragment of human immunoglobulin G glycoprotein. Biomolecular Nmr Assignments. 9: 257-60. PMID 25291979 DOI: 10.1007/S12104-014-9586-7  0.305
2015 YAMAGUCHI T, KATO K. Depicting the Dynamic Conformations of Sugar Chains Seibutsu Butsuri. 55: 081-083. DOI: 10.2142/Biophys.55.081  0.306
2015 Sato S, Takeuchi R, Yagi-Utsumi M, Yamaguchi T, Yamaguchi Y, Kato K, Fujita M. A self-assembled, π-stacked complex as a finely-tunable magnetic aligner for biomolecular NMR applications Chemical Communications. 51: 2540-2543. DOI: 10.1039/c4cc09354b  0.501
2014 Yamaguchi T, Sakae Y, Zhang Y, Yamamoto S, Okamoto Y, Kato K. Exploration of conformational spaces of high-mannose-type oligosaccharides by an NMR-validated simulation. Angewandte Chemie (International Ed. in English). 53: 10941-4. PMID 25196214 DOI: 10.1002/Anie.201406145  0.346
2014 Yamaguchi Y, Yamaguchi T, Kato K. Structural analysis of oligosaccharides and glycoconjugates using NMR. Advances in Neurobiology. 9: 165-83. PMID 25151379 DOI: 10.1007/978-1-4939-1154-7_8  0.358
2014 Satoh T, Toshimori T, Yamaguchi T, Tong Z, Kato K. Structural basis for substrate recognition mechanism of ER glucosidase II Acta Crystallographica Section a Foundations and Advances. 70: C300-C300. DOI: 10.1107/S2053273314096995  0.325
2014 Sugiyama M, Yagi H, Yamaguchi T, Kumoi K, Hirai M, Oba Y, Sato N, Porcar L, Martel A, Kato K. Conformational characterization of a protein complex involving intrinsically disordered protein by small-angle neutron scattering using the inverse contrast matching method: A case study of interaction between α-synuclein and PbaB tetramer as a model chaperone Journal of Applied Crystallography. 47: 430-435. DOI: 10.1107/S1600576713033475  0.355
2014 Doi T, Yoshida M, Ohsawa K, Shin-Ya K, Takagi M, Uekusa Y, Yamaguchi T, Kato K, Hirokawa T, Natsume T. Total synthesis and characterization of thielocin B1 as a protein-protein interaction inhibitor of PAC3 homodimer Chemical Science. 5: 1860-1868. DOI: 10.1039/C3Sc53237B  0.346
2013 Zhang Y, Yamaguchi T, Kato K. New NMR Tools for Characterizing the Dynamic Conformations and Interactions of Oligosaccharides Chemistry Letters. 42: 1455-1462. DOI: 10.1246/Cl.130789  0.347
2013 Yamaguchi T, Kamiya Y, Choo Y, Yamamoto S, Kato K. Terminal Spin Labeling of a High-mannose-type Oligosaccharide for Quantitative NMR Analysis of Its Dynamic Conformation Chemistry Letters. 42: 544-546. DOI: 10.1246/Cl.130040  0.336
2012 Zhang Y, Yamamoto S, Yamaguchi T, Kato K. Application of paramagnetic NMR-validated molecular dynamics simulation to the analysis of a conformational ensemble of a branched oligosaccharide. Molecules (Basel, Switzerland). 17: 6658-71. PMID 22728360 DOI: 10.3390/Molecules17066658  0.369
2012 Yamamoto S, Zhang Y, Yamaguchi T, Kameda T, Kato K. Lanthanide-assisted NMR evaluation of a dynamic ensemble of oligosaccharide conformations. Chemical Communications (Cambridge, England). 48: 4752-4. PMID 22472911 DOI: 10.1039/C2Cc30353A  0.345
2011 Yamamoto S, Yamaguchi T, Erdélyi M, Griesinger C, Kato K. Paramagnetic lanthanide tagging for nmr conformational analyses of N-linked oligosaccharides Chemistry - a European Journal. 17: 9280-9282. PMID 21774005 DOI: 10.1002/Chem.201100856  0.342
2009 Jang M, Yamaguchi T, Ohara K, Kawano M, Fujita M. Fluorous pores in coordination networks. Chemistry, An Asian Journal. 4: 1524-6. PMID 19739200 DOI: 10.1002/Asia.200900293  0.405
2008 Nishioka Y, Yamaguchi T, Kawano M, Fujita M. Asymmetric [2 + 2] olefin cross photoaddition in a self-assembled host with remote chiral auxiliaries. Journal of the American Chemical Society. 130: 8160-1. PMID 18540605 DOI: 10.1021/Ja802818T  0.521
2008 Yamaguchi T, Fujita M. Highly selective photomediated 1,4-radical addition to o-quinones controlled by a self-assembled cage. Angewandte Chemie (International Ed. in English). 47: 2067-9. PMID 18247442 DOI: 10.1002/Anie.200705139  0.494
2007 Nishioka Y, Yamaguchi T, Yoshizawa M, Fujita M. Unusual [2+4] and [2+2] cycloadditions of arenes in the confined cavity of self-assembled cages. Journal of the American Chemical Society. 129: 7000-1. PMID 17497783 DOI: 10.1021/Ja071591X  0.611
2007 Yamaguchi T, Tashiro S, Tominaga M, Kawano M, Ozeki T, Fujita M. Self-assembly and host-guest chemistry of a 3.5-nm coordination nanotube. Chemistry, An Asian Journal. 2: 468-76. PMID 17441183 DOI: 10.1002/Asia.200600429  0.672
2004 Yamaguchi T, Tashiro S, Tominaga M, Kawano M, Ozeki T, Fujita M. A 3.5-nm coordination nanotube. Journal of the American Chemical Society. 126: 10818-9. PMID 15339147 DOI: 10.1021/Ja047048N  0.654
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