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Joseph H Davis, Ph.D. - Publications

Affiliations: 
2017- Biology Massachusetts Institute of Technology, Cambridge, MA, United States 
Area:
Macromolecular complexes, biochemistry
Website:
http://www.jhdavislab.org
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25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Ghanbarpour A, Sauer RT, Davis JH. A proteolytic AAA+ machine poised to unfold protein substrates. Nature Communications. 15: 9681. PMID 39516482 DOI: 10.1038/s41467-024-53681-9  0.773
2024 Telusma B, Farre JC, Cui DS, Subramani S, Davis JH. Bulk and selective autophagy cooperate to remodel a fungal proteome in response to changing nutrient availability. Biorxiv : the Preprint Server For Biology. PMID 39386609 DOI: 10.1101/2024.09.24.614842  0.321
2024 Ghanbarpour A, Telusma B, Powell BM, Zhang JJ, Bolstad I, Vargas C, Keller S, Baker T, Sauer RT, Davis JH. An asymmetric nautilus-like HflK/C assembly controls FtsH proteolysis of membrane proteins. Biorxiv : the Preprint Server For Biology. PMID 39149393 DOI: 10.1101/2024.08.09.604662  0.726
2023 Ghanbarpour A, Sauer RT, Davis JH. A proteolytic AAA+ machine poised to unfold a protein substrate. Biorxiv : the Preprint Server For Biology. PMID 38168193 DOI: 10.1101/2023.12.14.571662  0.772
2023 Ghanbarpour A, Cohen SE, Fei X, Kinman LF, Bell TA, Zhang JJ, Baker TA, Davis JH, Sauer RT. A closed translocation channel in the substrate-free AAA+ ClpXP protease diminishes rogue degradation. Nature Communications. 14: 7281. PMID 37949857 DOI: 10.1038/s41467-023-43145-x  0.701
2023 Ghanbarpour A, Fei X, Baker TA, Davis JH, Sauer RT. The SspB adaptor drives structural changes in the AAA+ ClpXP protease during ssrA-tagged substrate delivery. Proceedings of the National Academy of Sciences of the United States of America. 120: e2219044120. PMID 36730206 DOI: 10.1073/pnas.2219044120  0.727
2022 Vasyliuk D, Felt J, Zhong ED, Berger B, Davis JH, Yip CK. Conformational landscape of the yeast SAGA complex as revealed by cryo-EM. Scientific Reports. 12: 12306. PMID 35853968 DOI: 10.1038/s41598-022-16391-0  0.302
2019 Razi A, Davis JH, Hao Y, Jahagirdar D, Thurlow B, Basu K, Jain N, Gomez-Blanco J, Britton RA, Vargas J, GuarnĂ© A, Woodson SA, Williamson JR, Ortega J. Role of Era in assembly and homeostasis of the ribosomal small subunit. Nucleic Acids Research. PMID 31265110 DOI: 10.1093/nar/gkz571  0.597
2017 Tan YZ, Baldwin PR, Davis JH, Williamson JR, Potter CS, Carragher B, Lyumkis D. Addressing preferred specimen orientation in single-particle cryo-EM through tilting. Nature Methods. PMID 28671674 DOI: 10.1038/Nmeth.4347  0.494
2017 Davis JH, Williamson JR. Structure and dynamics of bacterial ribosome biogenesis. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 372. PMID 28138067 DOI: 10.1098/Rstb.2016.0181  0.581
2016 Davis JH, Tan YZ, Carragher B, Potter CS, Lyumkis D, Williamson JR. Modular Assembly of the Bacterial Large Ribosomal Subunit. Cell. 167: 1610-1622.e15. PMID 27912064 DOI: 10.1016/J.Cell.2016.11.020  0.59
2016 Ni X, Davis JH, Jain N, Razi A, Benlekbir S, McArthur AG, Rubinstein JL, Britton RA, Williamson JR, Ortega J. YphC and YsxC GTPases assist the maturation of the central protuberance, GTPase associated region and functional core of the 50S ribosomal subunit. Nucleic Acids Research. PMID 27484475 DOI: 10.1093/Nar/Gkw678  0.567
2016 Thurlow B, Davis JH, Leong V, F Moraes T, Williamson JR, Ortega J. Binding properties of YjeQ (RsgA), RbfA, RimM and Era to assembly intermediates of the 30S subunit. Nucleic Acids Research. PMID 27382067 DOI: 10.1093/Nar/Gkw613  0.503
2014 Gulati M, Jain N, Davis JH, Williamson JR, Britton RA. Functional interaction between ribosomal protein L6 and RbgA during ribosome assembly. Plos Genetics. 10: e1004694. PMID 25330043 DOI: 10.1371/Journal.Pgen.1004694  0.57
2014 Stokes JM, Davis JH, Mangat CS, Williamson JR, Brown ED. Discovery of a small molecule that inhibits bacterial ribosome biogenesis. Elife. 3: e03574. PMID 25233066 DOI: 10.7554/Elife.03574  0.573
2014 Jomaa A, Jain N, Davis JH, Williamson JR, Britton RA, Ortega J. Functional domains of the 50S subunit mature late in the assembly process. Nucleic Acids Research. 42: 3419-35. PMID 24335279 DOI: 10.1093/Nar/Gkt1295  0.556
2014 Stokes JM, Davis JH, Mangat CS, Williamson JR, Brown ED. Author response: Discovery of a small molecule that inhibits bacterial ribosome biogenesis Elife. DOI: 10.7554/Elife.03574.025  0.478
2012 Chen SS, Sperling E, Silverman JM, Davis JH, Williamson JR. Measuring the dynamics of E. coli ribosome biogenesis using pulse-labeling and quantitative mass spectrometry. Molecular Biosystems. 8: 3325-34. PMID 23090316 DOI: 10.1039/C2Mb25310K  0.578
2011 Davis JH, Baker TA, Sauer RT. Small-molecule control of protein degradation using split adaptors. Acs Chemical Biology. 6: 1205-13. PMID 21866931 DOI: 10.1021/Cb2001389  0.717
2011 Davis JH, Rubin AJ, Sauer RT. Design, construction and characterization of a set of insulated bacterial promoters. Nucleic Acids Research. 39: 1131-41. PMID 20843779 DOI: 10.1093/Nar/Gkq810  0.581
2010 Shin Y, Davis JH, Brau RR, Martin A, Baker T, Sauer RT, Lang MJ. Clpxp Degradation of Proteins Probed By Single-Molecule Fluorescence Biophysical Journal. 98: 34a. DOI: 10.1016/J.Bpj.2009.12.200  0.758
2009 Shin Y, Davis JH, Brau RR, Martin A, Kenniston JA, Baker TA, Sauer RT, Lang MJ. Single-molecule denaturation and degradation of proteins by the AAA+ ClpXP protease. Proceedings of the National Academy of Sciences of the United States of America. 106: 19340-5. PMID 19892734 DOI: 10.1073/Pnas.0910484106  0.772
2009 Davis JH, Baker TA, Sauer RT. Engineering synthetic adaptors and substrates for controlled ClpXP degradation. The Journal of Biological Chemistry. 284: 21848-55. PMID 19549779 DOI: 10.1074/Jbc.M109.017624  0.711
2006 Boon EM, Davis JH, Tran R, Karow DS, Huang SH, Pan D, Miazgowicz MM, Mathies RA, Marletta MA. Nitric oxide binding to prokaryotic homologs of the soluble guanylate cyclase beta1 H-NOX domain. The Journal of Biological Chemistry. 281: 21892-902. PMID 16728401 DOI: 10.1074/Jbc.M600557200  0.499
2005 Karow DS, Pan D, Davis JH, Behrends S, Mathies RA, Marletta MA. Characterization of functional heme domains from soluble guanylate cyclase. Biochemistry. 44: 16266-74. PMID 16331987 DOI: 10.1021/Bi051601B  0.529
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