| Year |
Citation |
Score |
| 2023 |
Boone M, Ramasamy P, Zuallaert J, Bouwmeester R, Van Moer B, Maddelein D, Turan D, Hulstaert N, Eeckhaut H, Vandermarliere E, Martens L, Degroeve S, De Neve W, Vranken W, Callewaert N. Author Correction: Massively parallel interrogation of protein fragment secretability using SECRiFY reveals features influencing secretory system transit. Nature Communications. 14: 1072. PMID 36828852 DOI: 10.1038/s41467-023-36844-y |
0.728 |
|
| 2022 |
Ramasamy P, Vandermarliere E, Vranken WF, Martens L. Panoramic Perspective on Human Phosphosites. Journal of Proteome Research. 21: 1894-1915. PMID 35793420 DOI: 10.1021/acs.jproteome.2c00164 |
0.787 |
|
| 2022 |
Shiferaw GA, Gabriels R, Bouwmeester R, Van Den Bossche T, Vandermarliere E, Martens L, Volders PJ. Sensitive and Specific Spectral Library Searching with CompOmics Spectral Library Searching Tool and Percolator. Journal of Proteome Research. 21: 1365-1370. PMID 35446579 DOI: 10.1021/acs.jproteome.2c00075 |
0.732 |
|
| 2021 |
Boone M, Ramasamy P, Zuallaert J, Bouwmeester R, Van Moer B, Maddelein D, Turan D, Hulstaert N, Eeckhaut H, Vandermarliere E, Martens L, Degroeve S, De Neve W, Vranken W, Callewaert N. Massively parallel interrogation of protein fragment secretability using SECRiFY reveals features influencing secretory system transit. Nature Communications. 12: 6414. PMID 34741024 DOI: 10.1038/s41467-021-26720-y |
0.75 |
|
| 2020 |
Smith S, Zhu S, Joos L, Roberts I, Nikonorova N, Vu LD, Stes E, Cho H, Larrieu A, Xuan W, Goodall B, van de Cotte B, Waite JM, Rigal A, Ramans Harborough S, ... ... Vandermarliere E, et al. The CEP5 Peptide Promotes Abiotic Stress Tolerance, As Revealed by Quantitative Proteomics, and Attenuates the AUX/IAA Equilibrium in Arabidopsis. Molecular & Cellular Proteomics : McP. 19: 1248-1262. PMID 33451502 DOI: 10.1074/mcp.RA119.001826 |
0.446 |
|
| 2020 |
Ramasamy P, Turan D, Tichshenko N, Hulstaert N, Vandermarliere E, Vranken W, Martens L. Scop3P: A Comprehensive Resource of Human Phosphosites within Their Full Context. Journal of Proteome Research. PMID 32508104 DOI: 10.1021/Acs.Jproteome.0C00306 |
0.786 |
|
| 2020 |
Smith S, Zhu S, Joos L, Roberts I, Nikonorova N, Vu LD, Stes E, Cho H, Larrieu A, Xuan W, Goodall B, van de Cotte B, Waite JM, Rigal A, R Harborough SR, ... ... Vandermarliere E, et al. The CEP5 peptide promotes abiotic stress tolerance, as revealed by quantitative proteomics, and attenuates the AUX/IAA equilibrium in Arabidopsis. Molecular & Cellular Proteomics : McP. PMID 32404488 DOI: 10.1074/Mcp.Ra119.001826 |
0.507 |
|
| 2020 |
Shiferaw GA, Vandermarliere E, Hulstaert N, Gabriels R, Martens L, Volders PJ. COSS: A Fast and User-Friendly Tool for Spectral Library Searching. Journal of Proteome Research. PMID 32384242 DOI: 10.1021/Acs.Jproteome.9B00743 |
0.76 |
|
| 2020 |
Gouma S, Vermeire T, Van Gucht S, Martens L, Hutse V, Cremer J, Rota PA, Leroux-Roels G, Koopmans M, van Binnendijk R, Vandermarliere E. Publisher Correction: Differences in antigenic sites and other functional regions between genotype A and G mumps virus surface proteins. Scientific Reports. 10: 5456. PMID 32198462 DOI: 10.1038/S41598-020-62301-7 |
0.752 |
|
| 2019 |
Ivanova H, Wagner LE, Tanimura A, Vandermarliere E, Luyten T, Welkenhuyzen K, Alzayady KJ, Wang L, Hamada K, Mikoshiba K, De Smedt H, Martens L, Yule DI, Parys JB, Bultynck G. Bcl-2 and IP compete for the ligand-binding domain of IPRs modulating Ca signaling output. Cellular and Molecular Life Sciences : Cmls. PMID 30989245 DOI: 10.1007/S00018-019-03091-8 |
0.481 |
|
| 2018 |
Buthelezi SG, Dirr HW, Chakauya E, Chikwamba R, Martens L, Tsekoa TL, Vandermarliere E, Stoychev SH. The study of degradation mechanisms of glyco-engineered plant produced anti-rabies monoclonal antibodies E559 and 62-71-3. Plos One. 13: e0209373. PMID 30571707 DOI: 10.1371/Journal.Pone.0209373 |
0.503 |
|
| 2018 |
Kreft L, Turan D, Hulstaert N, Botzki A, Martens L, Vandermarliere E. Scop3D: online visualization of mutation rates on protein structure. Journal of Proteome Research. PMID 30540477 DOI: 10.1021/Acs.Jproteome.8B00681 |
0.788 |
|
| 2018 |
Vermeire T, Barbezange C, Francart A, Hamouda A, Litzroth A, Hutse V, Martens L, Vandermarliere E, Van Gucht S. Sera from different age cohorts in Belgium show limited cross-neutralization between the mumps vaccine and outbreak strains. Clinical Microbiology and Infection : the Official Publication of the European Society of Clinical Microbiology and Infectious Diseases. 25: 907.e1-907.e6. PMID 30502489 DOI: 10.1016/J.Cmi.2018.11.016 |
0.715 |
|
| 2018 |
Gouma S, Vermeire T, Van Gucht S, Martens L, Hutse V, Cremer J, Rota PA, Leroux-Roels G, Koopmans M, Binnendijk RV, Vandermarliere E. Differences in antigenic sites and other functional regions between genotype A and G mumps virus surface proteins. Scientific Reports. 8: 13337. PMID 30190529 DOI: 10.1038/S41598-018-31630-Z |
0.753 |
|
| 2018 |
Yılmaz Ş, Shiferaw GA, Rayo J, Economou A, Martens L, Vandermarliere E. Cross-linked peptide identification: A computational forest of algorithms. Mass Spectrometry Reviews. PMID 29529716 DOI: 10.1002/Mas.21559 |
0.759 |
|
| 2018 |
De Wilde B, Beckers A, Lindner S, Kristina A, De Preter K, Depuydt P, Mestdagh P, Sante T, Lefever S, Hertwig F, Peng Z, Shi LM, Lee S, Vandermarliere E, Martens L, et al. The mutational landscape of,anddriven murine neuroblastoma mimics human disease. Oncotarget. 9: 8334-8349. PMID 29492199 DOI: 10.18632/Oncotarget.23614 |
0.489 |
|
| 2017 |
Monaco G, La Rovere R, Karamanou S, Welkenhuyzen K, Ivanova H, Vandermarliere E, Di Martile M, Del Bufalo D, De Smedt H, Parys JB, Economou A, Bultynck G. A double point mutation at residues Ile14 and Val15 of Bcl-2 uncovers a role for BH4 domain in both protein stability and function. The Febs Journal. PMID 29131545 DOI: 10.1111/Febs.14324 |
0.332 |
|
| 2017 |
Yilmaz Ş, Vandermarliere E, Martens L. Methods to Calculate Spectrum Similarity. Methods in Molecular Biology (Clifton, N.J.). 1549: 75-100. PMID 27975285 DOI: 10.1007/978-1-4939-6740-7_7 |
0.754 |
|
| 2016 |
Yılmaz Ş, Drepper F, Hulstaert N, Cernic M, Gevaert K, Economou A, Warscheid B, Martens L, Vandermarliere E. Xilmass: a new approach towards the identification of cross-linked peptides. Analytical Chemistry. PMID 27642655 DOI: 10.1021/Acs.Analchem.6B01585 |
0.771 |
|
| 2016 |
Buthelezi SG, Dirr HW, Chakauya E, Chikwamba R, Martens L, Tsekoa TL, Stoychev SH, Vandermarliere E. The Lyssavirus glycoprotein: A key to cross-immunity. Virology. 498: 250-256. PMID 27614701 DOI: 10.1016/J.Virol.2016.08.034 |
0.559 |
|
| 2016 |
Arora R, Di Michele M, Stes E, Vandermarliere E, Martens L, Gevaert K, Van Heerde E, Linders JT, Brehmer D, Jacoby E, Bonnet P. Correction to Structural Investigation of B-Raf Paradox Breaker and Inducer Inhibitors. Journal of Medicinal Chemistry. PMID 27385554 DOI: 10.1021/Acs.Jmedchem.6B00941 |
0.474 |
|
| 2016 |
Vandemoortele G, Staes A, Gonnelli G, Samyn N, De Sutter D, Vandermarliere E, Timmerman E, Gevaert K, Martens L, Eyckerman S. An extra dimension in protein tagging by quantifying universal proteotypic peptides using targeted proteomics. Scientific Reports. 6: 27220. PMID 27264994 DOI: 10.1038/Srep27220 |
0.802 |
|
| 2016 |
Yılmaz Ş, Victor B, Hulstaert N, Vandermarliere E, Barsnes H, Degroeve S, Gupta S, Sticker A, Gabriël S, Dorny P, Palmblad M, Martens L. A pipeline for differential proteomics in unsequenced species. Journal of Proteome Research. PMID 27089233 DOI: 10.1021/Acs.Jproteome.6B00140 |
0.746 |
|
| 2016 |
Vermeire T, Gouma S, Van Gucht S, Martens L, Hutse V, Cremer J, Rota P, Leroux-Roels G, Koopmans M, Van Binnendijk R, Vandermarliere E. Differences among mumps virus surface proteins between genotype G and other genotypes and their potential effect on mumps virus immunity and pathogenesis Journal of Clinical Virology. 82: S20. DOI: 10.1016/J.Jcv.2016.08.037 |
0.737 |
|
| 2015 |
Di Michele M, Stes E, Vandermarliere E, Arora R, Astorga-Wells J, Vandenbussche J, van Heerde E, Zubarev R, Bonnet P, Linders JT, Jacoby E, Brehmer D, Martens L, Gevaert K. Limited Proteolysis Combined with Stable Isotope Labeling Reveals Conformational Changes in Protein (Pseudo)kinases upon Binding Small Molecules. Journal of Proteome Research. 14: 4179-93. PMID 26293246 DOI: 10.1021/Acs.Jproteome.5B00282 |
0.524 |
|
| 2015 |
Vervliet T, Lemmens I, Vandermarliere E, Decrock E, Ivanova H, Monaco G, Sorrentino V, Nadif Kasri N, Missiaen L, Martens L, De Smedt H, Leybaert L, Parys JB, Tavernier J, Bultynck G. Ryanodine receptors are targeted by anti-apoptotic Bcl-XL involving its BH4 domain and Lys87 from its BH3 domain. Scientific Reports. 5: 9641. PMID 25872771 DOI: 10.1038/Srep09641 |
0.483 |
|
| 2015 |
Vandermarliere E, Maddelein D, Hulstaert N, Stes E, Di Michele M, Gevaert K, Jacoby E, Brehmer D, Martens L. PepShell: visualization of conformational proteomics data. Journal of Proteome Research. 14: 1987-90. PMID 25728987 DOI: 10.1021/Pr5012125 |
0.807 |
|
| 2015 |
Vermeire T, Vermaere S, Schepens B, Saelens X, Van Gucht S, Martens L, Vandermarliere E. Scop3D: three-dimensional visualization of sequence conservation. Proteomics. 15: 1448-52. PMID 25641949 DOI: 10.1002/Pmic.201400354 |
0.789 |
|
| 2015 |
Arora R, Di Michele M, Stes E, Vandermarliere E, Martens L, Gevaert K, Van Heerde E, Linders JT, Brehmer D, Jacoby E, Bonnet P. Structural investigation of B-Raf paradox breaker and inducer inhibitors. Journal of Medicinal Chemistry. 58: 1818-31. PMID 25611072 DOI: 10.1021/Jm501667N |
0.477 |
|
| 2015 |
Vermeire T, Vermaere S, Van Gucht S, Hutse V, Martens L, Vandermarliere E. Computational analysis of mumps surface proteins reveals their interaction mechanism Journal of Clinical Virology. 70: S34. DOI: 10.1016/J.Jcv.2015.07.084 |
0.761 |
|
| 2014 |
Vandermarliere E, Stes E, Gevaert K, Martens L. Resolution of protein structure by mass spectrometry. Mass Spectrometry Reviews. PMID 25536908 DOI: 10.1002/Mas.21450 |
0.629 |
|
| 2014 |
Vandermarliere E, Ghesquière B, Jonckheere V, Gevaert K, Martens L. Unraveling the specificities of the different human methionine sulfoxide reductases. Proteomics. 14: 1990-8. PMID 24737740 DOI: 10.1002/Pmic.201300357 |
0.499 |
|
| 2013 |
Vandermarliere E, Mueller M, Martens L. Getting intimate with trypsin, the leading protease in proteomics. Mass Spectrometry Reviews. 32: 453-65. PMID 23775586 DOI: 10.1002/Mas.21376 |
0.629 |
|
| 2013 |
Fannes T, Vandermarliere E, Schietgat L, Degroeve S, Martens L, Ramon J. Predicting tryptic cleavage from proteomics data using decision tree ensembles. Journal of Proteome Research. 12: 2253-9. PMID 23517142 DOI: 10.7490/F1000Research.1094824.1 |
0.746 |
|
| 2013 |
Vandermarliere E, Martens L. Protein structure as a means to triage proposed PTM sites Proteomics. 13: 1028-1035. PMID 23172737 DOI: 10.1002/Pmic.201200232 |
0.596 |
|
| 2013 |
Stes E, Vandermarliere E, Linders J, Brehmer D, Martens L, Gevaert K. Study of the kinase switch mechanism in B-RAF upon small molecule binding via mass spectrometry F1000research. 4. DOI: 10.7490/F1000Research.1093063.1 |
0.481 |
|
| 2013 |
Van Nuffel A, Impens F, Baeyens A, Vanhee S, Witkowski W, Vandermarliere E, Vanderstraeten H, Naessens E, Vanlandeghem K, Vermaut S, Moens K, Van Damme P, Gevaert K, Verhasselt B. Vpr content of HIV-1 virions determines infection of resting peripheral blood CD4+ lymphocytes Retrovirology. 10. DOI: 10.1186/1742-4690-10-S1-P92 |
0.316 |
|
| 2009 |
Rombouts S, Fierens E, Vandermarliere E, Voet A, Gebruers K, Beaugrand J, Courtin CM, Delcour JA, de Maeyer M, Rabijns A, Van Campenhout S, Volckaert G. His22 of TLXI plays a critical role in the inhibition of glycoside hydrolase family 11 xylanases. Journal of Enzyme Inhibition and Medicinal Chemistry. 24: 38-46. PMID 18608747 DOI: 10.1080/14756360701841913 |
0.366 |
|
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