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Stanislav Y. Shvartsman - Publications

Affiliations: 
Chemical and Biological Engineering Princeton University, Princeton, NJ 
Area:
quantitative analysis of development
Website:
http://www.princeton.edu/cbe/people/faculty/shvartsman/

161 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Stern T, Shvartsman SY, Wieschaus EF. Template-based mapping of dynamic motifs in tissue morphogenesis. Plos Computational Biology. 16: e1008049. PMID 32822341 DOI: 10.1371/journal.pcbi.1008049  0.6
2020 Johnson HE, Djabrayan NJV, Shvartsman SY, Toettcher JE. Optogenetic Rescue of a Patterning Mutant. Current Biology : Cb. PMID 32707057 DOI: 10.1016/j.cub.2020.06.059  0.36
2020 Song Y, Shvartsman SY. Chemical Embryology Redux: Metabolic Control of Development. Trends in Genetics : Tig. PMID 32532533 DOI: 10.1016/j.tig.2020.05.007  0.4
2020 Dutta S, Djabrayan NJ, Smits CM, Rowley CW, Shvartsman SY. Excess dNTPs Trigger Oscillatory Surface Flow in the Early Drosophila Embryo. Biophysical Journal. PMID 32247330 DOI: 10.1016/j.bpj.2020.03.010  0.6
2020 Keenan SE, Blythe SA, Marmion RA, Djabrayan NJ, Wieschaus EF, Shvartsman SY. Rapid Dynamics of Signal-Dependent Transcriptional Repression by Capicua. Developmental Cell. PMID 32142631 DOI: 10.1016/j.devcel.2020.02.004  0.6
2020 Yeung E, McFann S, Marsh L, Dufresne E, Filippi S, Harrington HA, Shvartsman SY, Wühr M. Inference of Multisite Phosphorylation Rate Constants and Their Modulation by Pathogenic Mutations. Current Biology : Cb. PMID 32059766 DOI: 10.1016/j.cub.2019.12.052  0.56
2020 Paul S, Yang L, Mattingly H, Goyal Y, Shvartsman SY, Veraksa A. Activation-induced substrate engagement in ERK signaling. Molecular Biology of the Cell. mbcE19070355. PMID 31913744 DOI: 10.1091/mbc.E19-07-0355  0.88
2019 Patel AL, Yeung E, McGuire SE, Wu AY, Toettcher JE, Burdine RD, Shvartsman SY. Optimizing photoswitchable MEK. Proceedings of the National Academy of Sciences of the United States of America. PMID 31796593 DOI: 10.1073/pnas.1912320116  0.88
2019 Dutta S, Djabrayan NJ, Torquato S, Shvartsman SY, Krajnc M. Self-Similar Dynamics of Nuclear Packing in the Early Drosophila Embryo. Biophysical Journal. PMID 31378311 DOI: 10.1016/j.bpj.2019.07.009  0.6
2019 Taylor CA, Cormier KW, Keenan SE, Earnest S, Stippec S, Wichaidit C, Juang YC, Wang J, Shvartsman SY, Goldsmith EJ, Cobb MH. Functional divergence caused by mutations in an energetic hotspot in ERK2. Proceedings of the National Academy of Sciences of the United States of America. PMID 31296562 DOI: 10.1073/pnas.1905015116  0.6
2019 Song Y, Park JO, Tanner L, Nagano Y, Rabinowitz JD, Shvartsman SY. Energy budget of Drosophila embryogenesis. Current Biology : Cb. 29: R566-R567. PMID 31211973 DOI: 10.1016/j.cub.2019.05.025  0.4
2019 Djabrayan NJ, Smits CM, Krajnc M, Stern T, Yamada S, Lemon WC, Keller PJ, Rushlow CA, Shvartsman SY. Metabolic Regulation of Developmental Cell Cycles and Zygotic Transcription. Current Biology : Cb. PMID 30880009 DOI: 10.1016/j.cub.2019.02.028  0.72
2018 Alsous JI, Villoutreix P, Stoop N, Shvartsman SY, Dunkel J. Entropic effects in cell lineage tree packings. Nature Physics. 14: 1016-1021. PMID 30881478 DOI: 10.1038/s41567-018-0202-0  0.68
2018 Rauen KA, Schoyer L, Schill L, Stronach B, Albeck J, Andresen BS, Cavé H, Ellis M, Fruchtman SM, Gelb BD, Gibson CC, Gripp K, Hefner E, Huang WYC, Itkin M, ... ... Shvartsman S, et al. Proceedings of the fifth international RASopathies symposium: When development and cancer intersect. American Journal of Medical Genetics. Part A. e40632. PMID 30302932 DOI: 10.1002/ajmg.a.40632  0.68
2018 Goyal Y, Schüpbach T, Shvartsman SY. A quantitative model of developmental RTK signaling. Developmental Biology. PMID 30026122 DOI: 10.1016/j.ydbio.2018.07.012  0.88
2018 Diegmiller R, Montanelli H, Muratov CB, Shvartsman SY. Spherical Caps in Cell Polarization. Biophysical Journal. PMID 29933887 DOI: 10.1016/j.bpj.2018.05.033  0.68
2017 Keenan SE, Shvartsman SY. Mechanisms and causality in molecular diseases. History and Philosophy of the Life Sciences. 39: 35. PMID 29038918 DOI: 10.1007/s40656-017-0162-1  0.6
2017 Jindal GA, Goyal Y, Humphreys JM, Yeung E, Tian K, Patterson VL, He H, Burdine RD, Shvartsman SY, Goldsmith EJ. How activating mutations affect MEK1 regulation and function. The Journal of Biological Chemistry. PMID 29018093 DOI: 10.1074/jbc.C117.806067  0.88
2017 Villoutreix P, Andén J, Lim B, Lu H, Kevrekidis IG, Singer A, Shvartsman SY. Synthesizing developmental trajectories. Plos Computational Biology. 13: e1005742. PMID 28922353 DOI: 10.1371/journal.pcbi.1005742  1
2017 Imran Alsous J, Villoutreix P, Berezhkovskii AM, Shvartsman SY. Collective Growth in a Small Cell Network. Current Biology : Cb. PMID 28867205 DOI: 10.1016/j.cub.2017.07.038  0.76
2017 Mattingly HH, Sheintuch M, Shvartsman SY. The Design Space of the Embryonic Cell Cycle Oscillator. Biophysical Journal. 113: 743-752. PMID 28793227 DOI: 10.1016/j.bpj.2017.06.045  1
2017 Song Y, Marmion RA, Park JO, Biswas D, Rabinowitz JD, Shvartsman SY. Dynamic Control of dNTP Synthesis in Early Embryos. Developmental Cell. PMID 28735680 DOI: 10.1016/j.devcel.2017.06.013  0.6
2017 Cardoso MA, Fontenele M, Lim B, Bisch PM, Shvartsman S, Araujo HM. A novel function for Cactus/IκB inhibitor to promote Dl nuclear localization and activity in the Drosophila embryo. Development (Cambridge, England). PMID 28705899 DOI: 10.1242/dev.145557  0.92
2017 Pyrowolakis G, Veikkolainen V, Yakoby N, Shvartsman SY. Gene regulation during Drosophila eggshell patterning. Proceedings of the National Academy of Sciences of the United States of America. 114: 5808-5813. PMID 28584108 DOI: 10.1073/pnas.1610619114  1
2017 Osterfield M, Berg CA, Shvartsman SY. Epithelial Patterning, Morphogenesis, and Evolution: Drosophila Eggshell as a Model. Developmental Cell. 41: 337-348. PMID 28535370 DOI: 10.1016/j.devcel.2017.02.018  0.8
2017 Goyal Y, Levario TJ, Mattingly HH, Holmes S, Shvartsman SY, Lu H. Parallel imaging of Drosophila embryos for quantitative analysis of genetic perturbations of the Ras pathway. Disease Models & Mechanisms. PMID 28495673 DOI: 10.1242/dmm.030163  1
2017 Rogers WA, Goyal Y, Yamaya K, Shvartsman SY, Levine MS. Uncoupling neurogenic gene networks in the Drosophila embryo. Genes & Development. PMID 28428262 DOI: 10.1101/gad.297150.117  0.88
2017 Misra M, Audoly B, Shvartsman SY. Complex structures from patterned cell sheets. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 372. PMID 28348251 DOI: 10.1098/rstb.2015.0515  0.8
2017 Arora N, Alsous JI, Guggenheim JW, Mak M, Munera J, Wells JM, Kamm RD, Asada HH, Shvartsman SY, Griffith LG. A process engineering approach to increase organoid yield. Development (Cambridge, England). PMID 28174251 DOI: 10.1242/dev.142919  0.36
2017 Goyal Y, Jindal GA, Pelliccia JL, Yamaya K, Yeung E, Futran AS, Burdine RD, Schüpbach T, Shvartsman SY. Divergent effects of intrinsically active MEK variants on developmental Ras signaling. Nature Genetics. PMID 28166211 DOI: 10.1038/ng.3780  0.88
2017 Johnson HE, Goyal Y, Pannucci NL, Schüpbach T, Shvartsman SY, Toettcher JE. The Spatiotemporal Limits of Developmental Erk Signaling. Developmental Cell. 40: 185-192. PMID 28118601 DOI: 10.1016/j.devcel.2016.12.002  0.88
2017 Jindal GA, Goyal Y, Yamaya K, Futran AS, Kountouridis I, Balgobin CA, Schüpbach T, Burdine RD, Shvartsman SY. In vivo severity ranking of Ras pathway mutations associated with developmental disorders. Proceedings of the National Academy of Sciences of the United States of America. PMID 28049852 DOI: 10.1073/pnas.1615651114  0.88
2017 Lim B, Dsilva CJ, Kevrekidis IG, Shvartsman SY. Reconstructing ERK Signaling in the Drosophila Embryo from Fixed Images. Methods in Molecular Biology (Clifton, N.J.). 1487: 337-351. PMID 27924579 DOI: 10.1007/978-1-4939-6424-6_25  1
2016 Yang L, Paul S, Trieu KG, Dent LG, Froldi F, Forés M, Webster K, Siegfried KR, Kondo S, Harvey K, Cheng L, Jiménez G, Shvartsman SY, Veraksa A. Minibrain and Wings apart control organ growth and tissue patterning through down-regulation of Capicua. Proceedings of the National Academy of Sciences of the United States of America. PMID 27601662 DOI: 10.1073/pnas.1609417113  1
2016 Berezhkovskii AM, Shvartsman SY. Diffusive flux in a model of stochastically gated oxygen transport in insect respiration. The Journal of Chemical Physics. 144: 204101. PMID 27250273 DOI: 10.1063/1.4950769  0.76
2016 Rubinstein BY, Mattingly HH, Berezhkovskii AM, Shvartsman SY. LONG-TERM DYNAMICS OF MULTISITE PHOSPHORYLATION. Molecular Biology of the Cell. PMID 27226482 DOI: 10.1091/mbc.E16-03-0137  1
2016 Misra M, Audoly B, Kevrekidis IG, Shvartsman SY. Shape Transformations of Epithelial Shells. Biophysical Journal. 110: 1670-8. PMID 27074691 DOI: 10.1016/j.bpj.2016.03.009  1
2016 Levario TJ, Lim B, Shvartsman SY, Lu H. Microfluidics for High-Throughput Quantitative Studies of Early Development. Annual Review of Biomedical Engineering. PMID 26928208 DOI: 10.1146/annurev-bioeng-100515-013926  1
2016 Levario TJ, Zhao C, Rouse T, Shvartsman SY, Lu H. An integrated platform for large-scale data collection and precise perturbation of live Drosophila embryos. Scientific Reports. 6: 21366. PMID 26864815 DOI: 10.1038/srep21366  1
2015 Samee MA, Lim B, Samper N, Lu H, Rushlow CA, Jiménez G, Shvartsman SY, Sinha S. A Systematic Ensemble Approach to Thermodynamic Modeling of Gene Expression from Sequence Data. Cell Systems. 1: 396-407. PMID 27136354 DOI: 10.1016/j.cels.2015.12.002  0.92
2015 Jenni S, Goyal Y, von Grotthuss M, Shvartsman SY, Klein DE. Structural Basis of Neurohormone Perception by the Receptor Tyrosine Kinase Torso. Molecular Cell. 60: 941-52. PMID 26698662 DOI: 10.1016/j.molcel.2015.10.026  0.36
2015 Mattingly HH, Chen JJ, Arur S, Shvartsman SY. A Transport Model for Estimating the Time Course of ERK Activation in the C. elegans Germline. Biophysical Journal. 109: 2436-2445. PMID 26636953 DOI: 10.1016/j.bpj.2015.10.021  1
2015 Jindal GA, Goyal Y, Burdine RD, Rauen KA, Shvartsman SY. RASopathies: unraveling mechanisms with animal models. Disease Models & Mechanisms. 8: 1167. PMID 26398161 DOI: 10.1242/dmm.022442  0.88
2015 Berezhkovskii AM, Shvartsman SY. Dynamics of gradient formation by intracellular shuttling. The Journal of Chemical Physics. 143: 074116. PMID 26298124 DOI: 10.1063/1.4928858  1
2015 Jindal GA, Goyal Y, Burdine RD, Rauen KA, Shvartsman SY. RASopathies: unraveling mechanisms with animal models. Disease Models & Mechanisms. 8: 769-82. PMID 26203125 DOI: 10.1242/dmm.020339  1
2015 Murisic N, Hakim V, Kevrekidis IG, Shvartsman SY, Audoly B. From discrete to continuum models of three-dimensional deformations in epithelial sheets. Biophysical Journal. 109: 154-63. PMID 26153712 DOI: 10.1016/j.bpj.2015.05.019  1
2015 Futran AS, Kyin S, Shvartsman SY, Link AJ. Mapping the binding interface of ERK and transcriptional repressor Capicua using photocrosslinking. Proceedings of the National Academy of Sciences of the United States of America. PMID 26124095 DOI: 10.1073/pnas.1501373112  1
2015 Lim B, Dsilva CJ, Levario TJ, Lu H, Schüpbach T, Kevrekidis IG, Shvartsman SY. Dynamics of Inductive ERK Signaling in the Drosophila Embryo. Current Biology : Cb. PMID 26096970 DOI: 10.1016/j.cub.2015.05.039  1
2015 Osterfield M, Schüpbach T, Wieschaus E, Shvartsman SY. Diversity of epithelial morphogenesis during eggshell formation in drosophilids. Development (Cambridge, England). 142: 1971-7. PMID 25953345 DOI: 10.1242/dev.119404  1
2015 Dsilva CJ, Lim B, Lu H, Singer A, Kevrekidis IG, Shvartsman SY. Temporal ordering and registration of images in studies of developmental dynamics. Development (Cambridge, England). 142: 1717-24. PMID 25834019 DOI: 10.1242/dev.119396  1
2015 Charbonnier E, Fuchs A, Cheung LS, Chayengia M, Veikkolainen V, Seyfferth J, Shvartsman SY, Pyrowolakis G. BMP-dependent gene repression cascade in Drosophila eggshell patterning. Developmental Biology. 400: 258-65. PMID 25704512 DOI: 10.1016/j.ydbio.2015.02.004  1
2015 Cheung LS, Shvartsman S. A multiplex fluorescent in situ hybridization protocol for clonal analysis of Drosophila oogenesis. Methods in Molecular Biology (Clifton, N.J.). 1189: 115-22. PMID 25245690 DOI: 10.1007/978-1-4939-1164-6_8  1
2015 Charbonnier E, Fuchs A, Cheung LS, Chayengia M, Veikkolainen V, Seyfferth J, Shvartsman SY, Pyrowolakis G. Corrigendum to "BMP-dependent gene repression cascade in drosophila eggshell patterning" [Dev. Biol. 400 (2015) 258-265] Developmental Biology. 402: 263. DOI: 10.1016/j.ydbio.2015.05.003  1
2015 Samee MAH, Lim B, Samper N, Lu H, Rushlow CA, Jiménez G, Shvartsman SY, Sinha S. A Systematic Ensemble Approach to Thermodynamic Modeling of Gene Expression from Sequence Data Cell Systems. 1: 396-407. DOI: 10.1016/j.cels.2015.12.002  1
2015 Murisic N, Hakim V, Kevrekidis IG, Shvartsman SY, Audoly B. From Discrete to Continuum Models of Three-Dimensional Deformations in Epithelial Sheets Biophysical Journal. 109: 154-163. DOI: 10.1016/j.bpj.2015.05.019  1
2014 Du X, Osterfield M, Shvartsman SY. Computational analysis of three-dimensional epithelial morphogenesis using vertex models. Physical Biology. 11: 066007. PMID 25410646 DOI: 10.1088/1478-3975/11/6/066007  1
2014 Shvartsman S, Baker RE. Editorial. Seminars in Cell & Developmental Biology. 35: 57. PMID 25091510 DOI: 10.1016/j.semcdb.2014.07.015  1
2014 Foo SM, Sun Y, Lim B, Ziukaite R, O'Brien K, Nien CY, Kirov N, Shvartsman SY, Rushlow CA. Zelda potentiates morphogen activity by increasing chromatin accessibility. Current Biology : Cb. 24: 1341-6. PMID 24909324 DOI: 10.1016/j.cub.2014.04.032  1
2014 Fletcher AG, Osterfield M, Baker RE, Shvartsman SY. Vertex models of epithelial morphogenesis. Biophysical Journal. 106: 2291-304. PMID 24896108 DOI: 10.1016/j.bpj.2013.11.4498  1
2014 Berezhkovskii AM, Shvartsman SY. On the GFP-based analysis of dynamic concentration profiles. Biophysical Journal. 106: L13-5. PMID 24507618 DOI: 10.1016/j.bpj.2013.12.007  1
2013 Futran AS, Link AJ, Seger R, Shvartsman SY. ERK as a model for systems biology of enzyme kinetics in cells. Current Biology : Cb. 23: R972-9. PMID 24200329 DOI: 10.1016/j.cub.2013.09.033  1
2013 Cheung LS, Simakov DS, Fuchs A, Pyrowolakis G, Shvartsman SY. Dynamic model for the coordination of two enhancers of broad by EGFR signaling. Proceedings of the National Academy of Sciences of the United States of America. 110: 17939-44. PMID 24127599 DOI: 10.1073/pnas.1304753110  1
2013 Kim Y, Iagovitina A, Ishihara K, Fitzgerald KM, Deplancke B, Papatsenko D, Shvartsman SY. Context-dependent transcriptional interpretation of mitogen activated protein kinase signaling in the Drosophila embryo. Chaos (Woodbury, N.Y.). 23: 025105. PMID 23822503 DOI: 10.1063/1.4808157  1
2013 Berezhkovskii AM, Shvartsman SY. Kinetics of receptor occupancy during morphogen gradient formation. The Journal of Chemical Physics. 138: 244105. PMID 23822225 DOI: 10.1063/1.4811654  1
2013 Lim B, Samper N, Lu H, Rushlow C, Jiménez G, Shvartsman SY. Kinetics of gene derepression by ERK signaling. Proceedings of the National Academy of Sciences of the United States of America. 110: 10330-5. PMID 23733957 DOI: 10.1073/pnas.1303635110  1
2013 Gordon PV, Muratov CB, Shvartsman SY. Local accumulation times for source, diffusion, and degradation models in two and three dimensions. The Journal of Chemical Physics. 138: 104121. PMID 23514479 DOI: 10.1063/1.4793985  1
2013 Levario TJ, Zhan M, Lim B, Shvartsman SY, Lu H. Microfluidic trap array for massively parallel imaging of Drosophila embryos. Nature Protocols. 8: 721-36. PMID 23493069 DOI: 10.1038/nprot.2013.034  1
2013 Osterfield M, Du X, Schüpbach T, Wieschaus E, Shvartsman SY. Three-dimensional epithelial morphogenesis in the developing Drosophila egg. Developmental Cell. 24: 400-10. PMID 23449472 DOI: 10.1016/j.devcel.2013.01.017  1
2012 Shvartsman SY, Baker RE. Mathematical models of morphogen gradients and their effects on gene expression. Wiley Interdisciplinary Reviews. Developmental Biology. 1: 715-30. PMID 23799569 DOI: 10.1002/wdev.55  1
2012 Grimm O, Sanchez Zini V, Kim Y, Casanova J, Shvartsman SY, Wieschaus E. Torso RTK controls Capicua degradation by changing its subcellular localization. Development (Cambridge, England). 139: 3962-8. PMID 23048183 DOI: 10.1242/dev.084327  1
2012 Rushlow CA, Shvartsman SY. Temporal dynamics, spatial range, and transcriptional interpretation of the Dorsal morphogen gradient. Current Opinion in Genetics & Development. 22: 542-6. PMID 22981910 DOI: 10.1016/j.gde.2012.08.005  1
2012 Helman A, Lim B, Andreu MJ, Kim Y, Shestkin T, Lu H, Jiménez G, Shvartsman SY, Paroush Z. RTK signaling modulates the Dorsal gradient. Development (Cambridge, England). 139: 3032-9. PMID 22791891 DOI: 10.1242/dev.075812  1
2012 Simakov DS, Cheung LS, Pismen LM, Shvartsman SY. EGFR-dependent network interactions that pattern Drosophila eggshell appendages. Development (Cambridge, England). 139: 2814-20. PMID 22782725 DOI: 10.1242/dev.077669  1
2012 Jiménez G, Shvartsman SY, Paroush Z. The Capicua repressor--a general sensor of RTK signaling in development and disease. Journal of Cell Science. 125: 1383-91. PMID 22526417 DOI: 10.1242/jcs.092965  1
2012 Kanodia JS, Liang HL, Kim Y, Lim B, Zhan M, Lu H, Rushlow CA, Shvartsman SY. Pattern formation by graded and uniform signals in the early Drosophila embryo. Biophysical Journal. 102: 427-33. PMID 22325264 DOI: 10.1016/j.bpj.2011.12.042  1
2012 Fuchs A, Cheung LS, Charbonnier E, Shvartsman SY, Pyrowolakis G. Transcriptional interpretation of the EGF receptor signaling gradient. Proceedings of the National Academy of Sciences of the United States of America. 109: 1572-7. PMID 22307613 DOI: 10.1073/pnas.1115190109  1
2012 Shvartsman S. Special section on signal transduction Physical Biology. 9. DOI: 10.1088/1478-3975/9/4/040201  1
2012 Hada? O, Schreiber I, P?ibyl M, Shvartsman SY. Minimal reaction network for bistability in the MAPK signalling cascade Aiche Annual Meeting, Conference Proceedings 1
2011 Liu P, Kevrekidis IG, Shvartsman SY. Substrate-dependent control of ERK phosphorylation can lead to oscillations. Biophysical Journal. 101: 2572-81. PMID 22261044 DOI: 10.1016/j.bpj.2011.10.025  1
2011 Muratov CB, Gordon PV, Shvartsman SY. Self-similar dynamics of morphogen gradients. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 84: 041916. PMID 22181184 DOI: 10.1103/PhysRevE.84.041916  1
2011 Berezhkovskii AM, Shvartsman SY. Physical interpretation of mean local accumulation time of morphogen gradient formation. The Journal of Chemical Physics. 135: 154115. PMID 22029305 DOI: 10.1063/1.3654159  1
2011 Kanodia JS, Kim Y, Tomer R, Khan Z, Chung K, Storey JD, Lu H, Keller PJ, Shvartsman SY. A computational statistics approach for estimating the spatial range of morphogen gradients. Development (Cambridge, England). 138: 4867-74. PMID 22007136 DOI: 10.1242/dev.071571  1
2011 Cheung LS, Schüpbach T, Shvartsman SY. Pattern formation by receptor tyrosine kinases: analysis of the Gurken gradient in Drosophila oogenesis. Current Opinion in Genetics & Development. 21: 719-25. PMID 21862318 DOI: 10.1016/j.gde.2011.07.009  1
2011 Zartman JJ, Cheung LS, Niepielko MG, Bonini C, Haley B, Yakoby N, Shvartsman SY. Pattern formation by a moving morphogen source. Physical Biology. 8: 045003. PMID 21750363 DOI: 10.1088/1478-3975/8/4/045003  1
2011 Berezhkovskii AM, Sample C, Shvartsman SY. Formation of morphogen gradients: local accumulation time. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 83: 051906. PMID 21728570 DOI: 10.1103/PhysRevE.83.051906  1
2011 Kim Y, Andreu MJ, Lim B, Chung K, Terayama M, Jiménez G, Berg CA, Lu H, Shvartsman SY. Gene regulation by MAPK substrate competition. Developmental Cell. 20: 880-7. PMID 21664584 DOI: 10.1016/j.devcel.2011.05.009  1
2011 Gordon PV, Sample C, Berezhkovskii AM, Muratov CB, Shvartsman SY. Local kinetics of morphogen gradients. Proceedings of the National Academy of Sciences of the United States of America. 108: 6157-62. PMID 21444770 DOI: 10.1073/pnas.1019245108  1
2011 Kim Y, Paroush Z, Nairz K, Hafen E, Jiménez G, Shvartsman SY. Substrate-dependent control of MAPK phosphorylation in vivo. Molecular Systems Biology. 7: 467. PMID 21283143 DOI: 10.1038/msb.2010.121  0.96
2011 Chung K, Kim Y, Kanodia JS, Gong E, Shvartsman SY, Lu H. A microfluidic array for large-scale ordering and orientation of embryos. Nature Methods. 8: 171-6. PMID 21186361 DOI: 10.1038/nmeth.1548  1
2010 Zartman JJ, Shvartsman SY. Unit operations of tissue development: epithelial folding. Annual Review of Chemical and Biomolecular Engineering. 1: 231-46. PMID 22432580 DOI: 10.1146/annurev-chembioeng-073009-100919  1
2010 Berezhkovskii AM, Sample C, Shvartsman SY. How long does it take to establish a morphogen gradient? Biophysical Journal. 99: L59-61. PMID 20959075 DOI: 10.1016/j.bpj.2010.07.045  1
2010 Tipping M, Kim Y, Kyriakakis P, Tong M, Shvartsman SY, Veraksa A. β-arrestin Kurtz inhibits MAPK and Toll signalling in Drosophila development. The Embo Journal. 29: 3222-35. PMID 20802461 DOI: 10.1038/emboj.2010.202  1
2010 Kavousanakis ME, Kanodia JS, Kim Y, Kevrekidis IG, Shvartsman SY. A compartmental model for the bicoid gradient. Developmental Biology. 345: 12-7. PMID 20580703 DOI: 10.1016/j.ydbio.2010.05.491  1
2010 Sample C, Shvartsman SY. Multiscale modeling of diffusion in the early Drosophila embryo. Proceedings of the National Academy of Sciences of the United States of America. 107: 10092-6. PMID 20479267 DOI: 10.1073/pnas.1001139107  1
2010 Kim Y, Coppey M, Grossman R, Ajuria L, Jiménez G, Paroush Z, Shvartsman SY. MAPK substrate competition integrates patterning signals in the Drosophila embryo. Current Biology : Cb. 20: 446-51. PMID 20171100 DOI: 10.1016/j.cub.2010.01.019  1
2010 Muratov CB, Shvartsman SY. Waves of autocrine signaling in patterned epithelia Mathematical Modelling of Natural Phenomena. 5: 46-63. DOI: 10.1051/mmnp/20105504  1
2010 Chung K, Kim Y, Gong E, Shvartsman S, Lu H. High-throughput end-on imaging of drosophila embryo for quantitative analysis of morphogens and signaling 14th International Conference On Miniaturized Systems For Chemistry and Life Sciences 2010, Microtas 2010. 3: 1676-1678.  1
2009 Kanodia JS, Rikhy R, Kim Y, Lund VK, DeLotto R, Lippincott-Schwartz J, Shvartsman SY. Dynamics of the Dorsal morphogen gradient. Proceedings of the National Academy of Sciences of the United States of America. 106: 21707-12. PMID 19996178 DOI: 10.1073/pnas.0912395106  1
2009 Zartman JJ, Kanodia JS, Cheung LS, Shvartsman SY. Feedback control of the EGFR signaling gradient: superposition of domain-splitting events in Drosophila oogenesis. Development (Cambridge, England). 136: 2903-11. PMID 19641013 DOI: 10.1242/dev.039545  1
2009 Yan SJ, Zartman JJ, Zhang M, Scott A, Shvartsman SY, Li WX. Bistability coordinates activation of the EGFR and DPP pathways in Drosophila vein differentiation. Molecular Systems Biology. 5: 278. PMID 19536201 DOI: 10.1038/msb.2009.35  1
2009 Muratov CB, Posta F, Shvartsman SY. Autocrine signal transmission with extracellular ligand degradation. Physical Biology. 6: 016006. PMID 19234361 DOI: 10.1088/1478-3975/6/1/016006  1
2009 Lembong J, Yakoby N, Shvartsman SY. Pattern formation by dynamically interacting network motifs. Proceedings of the National Academy of Sciences of the United States of America. 106: 3213-8. PMID 19218441 DOI: 10.1073/pnas.0810728106  1
2009 Shvartsman SY, Coppey M, Berezhkovskii AM. MAPK signaling in equations and embryos. Fly. 3: 62-7. PMID 19182542 DOI: 10.4161/fly.3.1.7776  1
2009 Berezhkovskii AM, Coppey M, Shvartsman SY. Signaling gradients in cascades of two-state reaction-diffusion systems. Proceedings of the National Academy of Sciences of the United States of America. 106: 1087-92. PMID 19147842 DOI: 10.1073/pnas.0811807106  1
2009 Zartman JJ, Kanodia JS, Yakoby N, Schafer X, Watson C, Schlichting K, Dahmann C, Shvartsman SY. Expression patterns of cadherin genes in Drosophila oogenesis. Gene Expression Patterns : Gep. 9: 31-6. PMID 18817893 DOI: 10.1016/j.gep.2008.09.001  1
2008 Posta F, Shvartsman SY, Muratov CB. Compensated optimal grids for elliptic boundary-value problems. Journal of Computational Physics. 227: 8622-8635. PMID 19802366 DOI: 10.1016/j.jcp.2008.06.026  1
2008 Yakoby N, Bristow CA, Gong D, Schafer X, Lembong J, Zartman JJ, Halfon MS, Schüpbach T, Shvartsman SY. A combinatorial code for pattern formation in Drosophila oogenesis. Developmental Cell. 15: 725-37. PMID 19000837 DOI: 10.1016/j.devcel.2008.09.008  1
2008 Zartman JJ, Yakoby N, Bristow CA, Zhou X, Schlichting K, Dahmann C, Shvartsman SY. Cad74A is regulated by BR and is required for robust dorsal appendage formation in Drosophila oogenesis. Developmental Biology. 322: 289-301. PMID 18708045 DOI: 10.1016/j.ydbio.2008.07.027  1
2008 Lembong J, Yakoby N, Shvartsman SY. Spatial regulation of BMP signaling by patterned receptor expression. Tissue Engineering. Part A. 14: 1469-77. PMID 18707227 DOI: 10.1089/ten.tea.2008.0098  1
2008 Shvartsman SY, Coppey M, Berezhkovskii AM. Dynamics of maternal morphogen gradients in Drosophila. Current Opinion in Genetics & Development. 18: 342-7. PMID 18602472 DOI: 10.1016/j.gde.2008.06.002  1
2008 Coppey M, Boettiger AN, Berezhkovskii AM, Shvartsman SY. Nuclear trapping shapes the terminal gradient in the Drosophila embryo. Current Biology : Cb. 18: 915-9. PMID 18571412 DOI: 10.1016/j.cub.2008.05.034  1
2008 Berezhkovskii AM, Coppey M, Sealfon SC, Shvartsman S. Cell-to-cell communication: time and length scales of ligand internalization in cultures of suspended cells. The Journal of Chemical Physics. 128: 225102. PMID 18554059 DOI: 10.1063/1.2936845  1
2008 Yakoby N, Lembong J, Schüpbach T, Shvartsman SY. Drosophila eggshell is patterned by sequential action of feedforward and feedback loops. Development (Cambridge, England). 135: 343-51. PMID 18077592 DOI: 10.1242/dev.008920  1
2008 Muratov CB, Shvartsman SY. Boundary homogenization for periodic arrays of absorbers Multiscale Modeling and Simulation. 7: 44-61. DOI: 10.1137/070692832  1
2008 Knothe Tate ML, Shvartsman S, Friedman A. Cell and Tissue Engineering - Taking cues from nature's engineering paradigm for developing, growing, and repairing tissues Tissue Engineering - Part a.. 14: 1459-1460. DOI: 10.1089/ten.tea.2008.0333  1
2008 Coppey M, Berezhkovskii AM, Kim Y, Boettiger AN, Shvartsman SY. Corrigendum to "Modeling the bicoid gradient: Diffusion and reversible nuclear trapping of a stable protein" [Dev. Biol. 312 (2007) 623-630] (DOI:10.1016/j.ydbio.2007.09.058) Developmental Biology. 316: 548. DOI: 10.1016/j.ydbio.2008.02.002  1
2008 Zartman JJ, Shvartsman SY. The coordinated control of EGFR signaling by multiple feedback loops: An experimental and computational study in a developing tissue Aiche Annual Meeting, Conference Proceedings 1
2008 Zartman J, Yakoby N, Kanodia JS, Shvartsman SY. Systems-level analysis of epithelial patterning and morphogenesis: The control of cytoskeleton and adhesion proteins by signaling pathways Aiche Annual Meeting, Conference Proceedings 1
2007 Zartman JJ, Shvartsman SY. Enhancer organization: transistor with a twist or something in a different vein? Current Biology : Cb. 17: R1048-50. PMID 18088586 DOI: 10.1016/j.cub.2007.10.036  1
2007 Coppey M, Berezhkovskii AM, Kim Y, Boettiger AN, Shvartsman SY. Modeling the bicoid gradient: diffusion and reversible nuclear trapping of a stable protein. Developmental Biology. 312: 623-30. PMID 18001703 DOI: 10.1016/j.ydbio.2007.09.058  1
2007 Qiao L, Nachbar RB, Kevrekidis IG, Shvartsman SY. Bistability and oscillations in the Huang-Ferrell model of MAPK signaling. Plos Computational Biology. 3: 1819-26. PMID 17907797 DOI: 10.1371/journal.pcbi.0030184  1
2007 Coppey M, Berezhkovskii AM, Sealfon SC, Shvartsman SY. Time and length scales of autocrine signals in three dimensions. Biophysical Journal. 93: 1917-22. PMID 17720734 DOI: 10.1529/biophysj.107.109736  1
2006 Reeves GT, Muratov CB, Schüpbach T, Shvartsman SY. Quantitative models of developmental pattern formation. Developmental Cell. 11: 289-300. PMID 16950121 DOI: 10.1016/j.devcel.2006.08.006  1
2006 Goentoro LA, Reeves GT, Kowal CP, Martinelli L, Schüpbach T, Shvartsman SY. Quantifying the Gurken morphogen gradient in Drosophila oogenesis. Developmental Cell. 11: 263-72. PMID 16890165 DOI: 10.1016/j.devcel.2006.07.004  1
2006 Nikolić DL, Boettiger AN, Bar-Sagi D, Carbeck JD, Shvartsman SY. Role of boundary conditions in an experimental model of epithelial wound healing. American Journal of Physiology. Cell Physiology. 291: C68-75. PMID 16495370 DOI: 10.1152/ajpcell.00411.2005  1
2006 Berezhkovskii AM, Monine MI, Muratov CB, Shvartsman SY. Homogenization of boundary conditions for surfaces with regular arrays of traps. The Journal of Chemical Physics. 124: 036103. PMID 16438616 DOI: 10.1063/1.2161196  1
2006 Goentoro LA, Yakoby N, Goodhouse J, Schüpbach T, Shvartsman SY. Quantitative analysis of the GAL4/UAS system in Drosophila oogenesis. Genesis (New York, N.Y. : 2000). 44: 66-74. PMID 16425298 DOI: 10.1002/gene.20184  1
2005 Yakoby N, Bristow CA, Gouzman I, Rossi MP, Gogotsi Y, Schüpbach T, Shvartsman SY. Systems-level questions in Drosophila oogenesis. Systems Biology. 152: 276-84. PMID 16986271 DOI: 10.1049/ip-syb:20050039  1
2005 Reeves GT, Kalifa R, Klein DE, Lemmon MA, Shvartsman SY. Computational analysis of EGFR inhibition by Argos. Developmental Biology. 284: 523-35. PMID 15982648 DOI: 10.1016/j.ydbio.2005.05.013  1
2005 Monine MI, Berezhkovskii AM, Joslin EJ, Wiley HS, Lauffenburger DA, Shvartsman SY. Ligand accumulation in autocrine cell cultures. Biophysical Journal. 88: 2384-90. PMID 15653719 DOI: 10.1529/biophysj.104.051425  1
2005 Shvartsman SY. Quantitative analysis of developing tissues Aiche Journal. 51: 1312-1318. DOI: 10.1002/aic.10525  1
2005 Yakoby N, Bristow CA, Kalifa R, Schupbach G, Shvartsman S. Cell fate determination by multiple signaling pathways: Genome-wide analysis and modeling of pattern formation in Drosophila egg development Aiche Annual Meeting, Conference Proceedings. 9242.  1
2005 Reeves GT, Kalifa R, Klein DE, Alvarado D, Duffy JB, Lemmon MA, Shvartsman S. Computational, genetic, and biochemical analysis of Egfr control by multiple feedback loops Aiche Annual Meeting, Conference Proceedings. 8301.  1
2005 Reeves GT, Muratov CB, Shvartsman S. Multiscale analysis of feedback control in epithelial patterning systems Aiche Annual Meeting, Conference Proceedings. 11666.  1
2005 Bristow CA, Yakoby N, Kalifa R, Schupbach G, Shvartsman S. Data integration and bioinformatics in the analysis of developing tissues Aiche Annual Meeting, Conference Proceedings. 9302.  1
2004 Berezhkovskii AM, Makhnovskii YA, Monine MI, Zitserman VY, Shvartsman SY. Boundary homogenization for trapping by patchy surfaces. The Journal of Chemical Physics. 121: 11390-4. PMID 15634098 DOI: 10.1063/1.1814351  1
2004 Muratov CB, Shvartsman SY. Signal propagation and failure in discrete autocrine relays. Physical Review Letters. 93: 118101. PMID 15447382 DOI: 10.1103/PhysRevLett.93.118101  1
2004 Klein DE, Nappi VM, Reeves GT, Shvartsman SY, Lemmon MA. Argos inhibits epidermal growth factor receptor signalling by ligand sequestration. Nature. 430: 1040-4. PMID 15329724 DOI: 10.1038/nature02840  1
2004 Berezhkovskii AM, Batsilas L, Shvartsman SY. Ligand trapping in epithelial layers and cell cultures. Biophysical Chemistry. 107: 221-7. PMID 14967237 DOI: 10.1016/j.bpc.2003.09.006  1
2004 Shvartsman SY, Wiley HS, Lauffenburger DA. Epidermal growth factor receptor signaling in tissues Ieee Control Systems Magazine. 24: 53-61. DOI: 10.1109/MCS.2004.1316653  1
2003 Batsilas L, Berezhkovskii AM, Shvartsman SY. Stochastic model of autocrine and paracrine signals in cell culture assays. Biophysical Journal. 85: 3659-65. PMID 14645058 DOI: 10.1016/S0006-3495(03)74783-3  1
2003 Pribyl M, Muratov CB, Shvartsman SY. Discrete models of autocrine cell communication in epithelial layers. Biophysical Journal. 84: 3624-35. PMID 12770871 DOI: 10.1016/S0006-3495(03)75093-0  1
2003 Pribyl M, Muratov CB, Shvartsman SY. Long-range signal transmission in autocrine relays. Biophysical Journal. 84: 883-96. PMID 12547771 DOI: 10.1016/S0006-3495(03)74906-6  1
2003 Pribyl M, Muratov CB, Shvartsman SY. Transitions in the model of epithelial patterning. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 226: 155-9. PMID 12508238 DOI: 10.1002/dvdy.10218  1
2003 Wiley HS, Shvartsman SY, Lauffenburger DA. Computational modeling of the EGF-receptor system: a paradigm for systems biology. Trends in Cell Biology. 13: 43-50. PMID 12480339 DOI: 10.1016/S0962-8924(02)00009-0  1
2003 Dagdug L, Berezhkovskii AM, Shvartsman SY, Weiss GH. Equilibration in two chambers connected by a capillary Journal of Chemical Physics. 119: 12473-12478. DOI: 10.1063/1.1626639  1
2003 Berezhkovskii AM, Zitserman VY, Shvartsman SY. Effective diffusivity in periodic porous materials Journal of Chemical Physics. 119: 6991-6993. DOI: 10.1063/1.1615758  1
2003 Berezhkovskii AM, Zitserman VY, Shvartsman SY. Diffusivity in periodic arrays of spherical cavities Journal of Chemical Physics. 118: 7146-7147. DOI: 10.1063/1.1561615  1
2003 Muratov CB, Shvartsman SY. An asymptotic study of the inductive pattern formation mechanism in Drosophila egg development Physica D: Nonlinear Phenomena. 186: 93-108. DOI: 10.1016/S0167-2789(03)00182-9  1
2002 Shvartsman SY. Shooting from the hip: spatial control of signal release by intracellular waves. Proceedings of the National Academy of Sciences of the United States of America. 99: 9087-9. PMID 12093926 DOI: 10.1073/pnas.152321799  1
2002 Shvartsman SY, Muratov CB, Lauffenburger DA. Modeling and computational analysis of EGF receptor-mediated cell communication in Drosophila oogenesis. Development (Cambridge, England). 129: 2577-89. PMID 12015287  1
2002 Shvartsman SY, Hagan MP, Yacoub A, Dent P, Wiley HS, Lauffenburger DA. Autocrine loops with positive feedback enable context-dependent cell signaling. American Journal of Physiology. Cell Physiology. 282: C545-59. PMID 11832340 DOI: 10.1152/ajpcell.00260.2001  1
2002 Shvartsman SY, Muratov CB. Measuring, modeling and manipulating cell communication in Drosophila egg development Annual International Conference of the Ieee Engineering in Medicine and Biology - Proceedings. 3: 2200-2201.  1
2001 Shvartsman SY, Wiley HS, Deen WM, Lauffenburger DA. Spatial range of autocrine signaling: modeling and computational analysis. Biophysical Journal. 81: 1854-67. PMID 11566760 DOI: 10.1016/S0006-3495(01)75837-7  1
2001 Shvartsman SY, Schütz E, Imbihl R, Kevrekidis IG. Dynamics of catalytic reactions on microdesigned surfaces Catalysis Today. 70: 301-310. DOI: 10.1016/S0920-5861(01)00338-8  1
2000 Shvartsman SY, Theodoropoulos C, Rico-Martínez R, Kevrekidis IG, Titi ES, Mountziaris TJ. Order reduction for nonlinear dynamic models of distributed reacting systems Journal of Process Control. 10: 177-184. DOI: 10.1016/S0959-1524(99)00029-3  1
1999 Shvartsman SY, Shütz E, Imbihl R, Kevrekidis IG. Dynamics on microcomposite catalytic surfacces: The effect of active boundaries Physical Review Letters. 83: 2857-2860.  1
1999 Anderson JS, Shvartsman SY, Flätgen G, Kevrekidis IG, Rico-Martínez R, Krischer K. Adaptive Method for the Experimental Detection of Instabilities Physical Review Letters. 82: 532-535.  1
1998 Shvartsman SY, Kevrekidis IG. Low-dimensional approximation and control of periodic solutions in spatially extended systems Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 58: 361-368.  1
1995 Shvartsman S, Sheintuch M. One- and two-dimensional spatiotemporal thermal patterns in a fixed-bed reactor Chemical Engineering Science. 50: 3125-3141. DOI: 10.1016/0009-2509(95)97492-P  1
1994 Sheintuch M, Shvartsman S. Patterns due to convection-diffusion-reaction interaction in a fixed-bed catalytic reactor Chemical Engineering Science. 49: 5315-5326. DOI: 10.1016/0009-2509(94)00298-3  1
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