In-Geol Choi - Publications

Affiliations: 
Korea Universisty 
Area:
Computational Genomics

103 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Min B, Choi IG. Practical Guide for Fungal Gene Prediction from Genome Assembly and RNA-Seq Reads by FunGAP. Methods in Molecular Biology (Clifton, N.J.). 1962: 53-64. PMID 31020554 DOI: 10.1007/978-1-4939-9173-0_4  1
2019 Hennessy RC, Park B, Pathiraja D, Choi IG, Schultz-Johansen M, Stougaard P. Draft Genome Sequences of Two Glycoalkaloid-Degrading Strains Isolated from Green Potato Peel. Microbiology Resource Announcements. 8. PMID 31000551 DOI: 10.1128/MRA.00226-19  1
2019 Yoo Y, Lee DW, Lee H, Kwon BO, Khim JS, Yim UH, Park H, Park B, Choi IG, Kim BS, Jeon SW, Kim GH, Kim JJ. Gemmobacter lutimaris sp. nov., a marine bacterium isolated from a tidal flat. International Journal of Systematic and Evolutionary Microbiology. PMID 30938664 DOI: 10.1099/ijsem.0.003375  1
2019 Kang H, Park B, Bolo NR, Pathiraja D, Park S, Cha M, Choi IG, Chang IS. Gene-centric metagenome analysis reveals gene clusters for carbon monoxide conversion and validates isolation of a clostridial acetogen for C2 chemical production. Biotechnology Journal. e1800471. PMID 30802355 DOI: 10.1002/biot.201800471  1
2019 Cho TJ, Yang D, Park B, Choi IG, Rhee MS. Whole-Genome Sequences of Five Geobacillus stearothermophilus Strains Isolated from Processing Lines of Powdered Infant Formula. Microbiology Resource Announcements. 8. PMID 30701238 DOI: 10.1128/MRA.01452-18  1
2018 Dichmann SI, Park B, Pathiraja D, Choi IG, Stougaard P, Hennessy RC. Draft Genome Sequence of a Novel sp. Strain with Antifungal Activity. Microbiology Resource Announcements. 7. PMID 30533854 DOI: 10.1128/MRA.01340-18  1
2018 Lee H, Lee YS, Lee SK, Baek S, Choi IG, Jang JH, Chang IS. Significant enhancement of direct electric communication across enzyme-electrode interface via nano-patterning of synthetic glucose dehydrogenase on spatially tunable gold nanoparticle (AuNP)-modified electrode. Biosensors & Bioelectronics. 126: 170-177. PMID 30399519 DOI: 10.1016/j.bios.2018.10.013  1
2018 Min B, Kim S, Oh YL, Kong WS, Park H, Cho H, Jang KY, Kim JG, Choi IG. Genomic discovery of the hypsin gene and biosynthetic pathways for terpenoids in Hypsizygus marmoreus. Bmc Genomics. 19: 789. PMID 30382831 DOI: 10.1186/s12864-018-5159-y  1
2018 Jeong JJ, Sang MK, Lee DW, Choi IG, Kim KD. Chryseobacterium phosphatilyticum sp. nov., a phosphate-solubilizing endophyte isolated from cucumber (Cucumis sativus L.) root. International Journal of Systematic and Evolutionary Microbiology. PMID 30372407 DOI: 10.1099/ijsem.0.003091  1
2018 Grum-Grzhimaylo AA, Falkoski DL, van den Heuvel J, Valero-Jiménez CA, Min B, Choi IG, Lipzen A, Daum CG, Aanen DK, Tsang A, Henrissat B, Bilanenko EN, de Vries RP, van Kan JAL, Grigoriev IV, et al. The obligate alkalophilic soda-lake fungus Sodiomyces alkalinus has shifted to a protein diet. Molecular Ecology. PMID 30368956 DOI: 10.1111/mec.14912  1
2018 Lee DW, Lee H, Kwon BO, Khim JS, Yim UH, Park H, Park B, Choi IG, Kim BS, Kim JJ. Maribacter litoralis sp. nov. a marine bacterium isolated from seashore. International Journal of Systematic and Evolutionary Microbiology. PMID 30222095 DOI: 10.1099/ijsem.0.003011  1
2018 Bang M, Yong C, Ko HJ, Choi IG, Oh S. Transcriptional response and enhanced of intestinal adhesion ability of GG after acid stress. Journal of Microbiology and Biotechnology. PMID 30196592 DOI: 10.4014/jmb.1807.07033  1
2018 Lee YS, Baek SW, Lee H, Reginald SS, Kim Y, Kang H, Choi I, Chang IS. Construction of Uniform Monolayer- and Orientation Tunable Enzyme Electrode by a Synthetic Glucose Dehydrogenase without Electron Transfer Subunit via Optimized Site-Specific Gold Binding Peptide Capable of Direct Electron Transfer. Acs Applied Materials & Interfaces. PMID 30067023 DOI: 10.1021/acsami.8b08876  1
2018 Jeong JJ, Lee YJ, Pathiraja D, Park B, Choi IG, Kim KD. Draft Genome Sequences of Chryseobacterium lactis NCTC11390 Isolated from Milk, Chryseobacterium oncorhynchi 701B-08 from Rainbow Trout, and Chryseobacterium viscerum 687B-08 from Diseased Fish. Genome Announcements. 6. PMID 29954917 DOI: 10.1128/genomeA.00628-18  1
2018 Jeong JJ, Sang MK, Pathiraja D, Park B, Choi IG, Kim KD. Draft Genome Sequence of Phosphate-Solubilizing Chryseobacterium sp. Strain ISE14, a Biocontrol and Plant Growth-Promoting Rhizobacterium Isolated from Cucumber. Genome Announcements. 6. PMID 29954909 DOI: 10.1128/genomeA.00612-18  1
2018 Pathiraja D, Lee S, Choi IG. Model-based complete enzymatic production of 3,6-anhydro-L-galactose from red algal biomass. Journal of Agricultural and Food Chemistry. PMID 29896965 DOI: 10.1021/acs.jafc.8b01792  1
2018 Jeong JJ, Moon HJ, Pathiraja D, Park B, Choi IG, Kim KD. Draft Genome Sequences of Bacillus megaterium KU143, Microbacterium testaceum KU313, and Pseudomonas protegens AS15, Isolated from Stored Rice Grains. Genome Announcements. 6. PMID 29853508 DOI: 10.1128/genomeA.00468-18  1
2018 Lee DW, Lee H, Kwon BO, Khim JS, Yim UH, Park H, Park B, Choi IG, Kim BS, Kim JJ. Zobellella maritima sp. nov., a polycyclic aromatic hydrocarbon-degrading bacterium, isolated from beach sediment. International Journal of Systematic and Evolutionary Microbiology. PMID 29781802 DOI: 10.1099/ijsem.0.002825  1
2017 Rhie MN, Park B, Ko HJ, Choi IG, Kim OB. Transcriptome analysis and anaerobic C4 -dicarboxylate transport in Actinobacillus succinogenes. Microbiologyopen. PMID 29230966 DOI: 10.1002/mbo3.565  1
2017 Wu C, Hwang SH, Jia Y, Choi J, Kim YJ, Choi D, Pathiraja D, Choi IG, Koo SH, Lee SJ. Olfactory receptor 544 reduces adiposity by steering fuel preference toward fats. The Journal of Clinical Investigation. PMID 28990936 DOI: 10.1172/JCI89344  1
2017 Ko HJ, Park HJ, Lee SH, Jeong H, Bae JH, Sung BH, Choi IG, Sohn JH. Draft Genome Sequence of an Acid-Tolerant Yeast, Candida zemplinina NP2, a Potential Producer of Organic Acids. Genome Announcements. 5. PMID 28963218 DOI: 10.1128/genomeA.01052-17  1
2017 Park S, Yasin M, Jeong J, Cha M, Kang H, Jang N, Choi IG, Chang IS. Acetate-assisted increase of butyrate production by Eubacterium limosum KIST612 during carbon monoxide fermentation. Bioresource Technology. 245: 560-566. PMID 28898856 DOI: 10.1016/j.biortech.2017.08.132  1
2017 Lee S, Yun EJ, Kim KH, Kim HY, Choi IG. 3,6-Anhydro-L-galactonate cycloisomerase from Vibrio sp. strain EJY3: crystallization and X-ray crystallographic analysis. Acta Crystallographica. Section F, Structural Biology Communications. 73: 511-514. PMID 28876229 DOI: 10.1107/S2053230X17011797  1
2017 Lee S, Kim KH, Kim HY, Choi IG. Crystal structure analysis of 3,6-anhydro-l-Galactonate cycloisomerase suggests emergence of novel substrate specificity in the enolase superfamily. Biochemical and Biophysical Research Communications. PMID 28716734 DOI: 10.1016/j.bbrc.2017.07.080  1
2017 Park B, Baek MJ, Min B, Choi IG. Prokaryotic Contig Annotation Pipeline Server: Web Application for a Prokaryotic Genome Annotation Pipeline Based on the Shiny App Package. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 28632399 DOI: 10.1089/cmb.2017.0066  1
2017 Min B, Grigoriev IV, Choi IG. FunGAP: Fungal Genome Annotation Pipeline Using Evidence-based Gene Model Evaluation. Bioinformatics (Oxford, England). PMID 28582481 DOI: 10.1093/bioinformatics/btx353  1
2017 Pathiraja D, Kim KH, Choi IG. Rapid and robust enzymatic sensing and quantitation of 3,6-Anhydro-L-galactose in a heterogeneous sugar mixture. Carbohydrate Research. 446: 13-18. PMID 28482192 DOI: 10.1016/j.carres.2017.04.022  1
2017 Min B, Park JH, Park H, Shin HD, Choi IG. Genome Analysis of a Zygomycete Fungus Choanephora cucurbitarum Elucidates Necrotrophic Features Including Bacterial Genes Related to Plant Colonization. Scientific Reports. 7: 40432. PMID 28091548 DOI: 10.1038/srep40432  1
2016 Jeong JJ, Lee DW, Park B, Sang MK, Choi IG, Kim KD. Chryseobacterium cucumeris sp. nov., an endophyte isolated from cucumber (Cucumis sativus L.) root and emended description of Chryseobacterium arthrosphaerae. International Journal of Systematic and Evolutionary Microbiology. PMID 27902284 DOI: 10.1099/ijsem.0.001670  1
2016 Jeong JJ, Park B, Oh JY, Mannaa M, Kim YJ, Hong JK, Choi IG, Kim KD. Draft Genome Sequences of Chryseobacterium artocarpi UTM-3T and Chryseobacterium contaminans C26T, Isolated from Rhizospheres, and Chryseobacterium arthrosphaerae CC-VM-7T, Isolated from the Feces of a Pill Millipede. Genome Announcements. 4. PMID 27795281 DOI: 10.1128/genomeA.01168-16  1
2016 Lee HJ, Kim IJ, Youn HJ, Yun EJ, Choi IG, Kim KH. Cellotriose-hydrolyzing activity conferred by truncating the carbohydrate-binding modules of Cel5 from Hahella chejuensis. Bioprocess and Biosystems Engineering. PMID 27761654 DOI: 10.1007/s00449-016-1692-8  1
2016 Kim JH, Yun EJ, Seo N, Yu S, Kim DH, Cho KM, An HJ, Kim JH, Choi IG, Kim KH. Enzymatic liquefaction of agarose above the sol-gel transition temperature using a thermostable endo-type β-agarase, Aga16B. Applied Microbiology and Biotechnology. PMID 27664160 DOI: 10.1007/s00253-016-7831-y  1
2016 Park H, Park B, Kim HJ, Park W, Choi IG. Draft Genome Sequences of Two Ureolytic Bacteria Isolated from Concrete Block Waste. Genome Announcements. 4. PMID 27491992 DOI: 10.1128/genomeA.00762-16  1
2016 Choi SY, Park B, Choi IG, Sim SJ, Lee SM, Um Y, Woo HM. Transcriptome landscape of Synechococcus elongatus PCC 7942 for nitrogen starvation responses using RNA-seq. Scientific Reports. 6: 30584. PMID 27488818 DOI: 10.1038/srep30584  1
2016 Jeong JJ, Park BH, Park H, Choi IG, Kim KD. Draft Genome Sequence of Chryseobacterium sp. Strain GSE06, a Biocontrol Endophytic Bacterium Isolated from Cucumber (Cucumis sativus). Genome Announcements. 4. PMID 27313310 DOI: 10.1128/genomeA.00577-16  1
2016 Jeong JJ, Park H, Park BH, Mannaa M, Sang MK, Choi IG, Kim KD. Draft Genome Sequence of a Biocontrol Rhizobacterium, Chryseobacterium kwangjuense Strain KJ1R5, Isolated from Pepper (Capsicum annuum). Genome Announcements. 4. PMID 27103726 DOI: 10.1128/genomeA.00301-16  1
2016 Ko JK, Ko H, Kim KH, Choi IG. Characterization of the biochemical properties of recombinant Xyn10C from a marine bacterium, Saccharophagus degradans 2-40. Bioprocess and Biosystems Engineering. PMID 26809714 DOI: 10.1007/s00449-016-1548-2  1
2015 Kim HJ, Eom HJ, Park C, Jung J, Shin B, Kim W, Chung N, Choi IG, Park W. Calcium carbonate precipitation by Bacillus and Sporosarcina strains isolated from concrete and analysis of the bacterial community of concrete. Journal of Microbiology and Biotechnology. PMID 26699752 DOI: 10.4014/jmb.1511.11008  1
2015 Lee S, Park EH, Ko HJ, Bang WG, Kim HY, Kim KH, Choi IG. Crystal structure analysis of a bacterial aryl acylamidase belonging to the Amidase Signature enzyme family. Biochemical and Biophysical Research Communications. PMID 26454172 DOI: 10.1016/j.bbrc.2015.09.177  1
2015 Yun EJ, Kim HT, Cho KM, Yu S, Kim S, Choi IG, Kim KH. Pretreatment and saccharification of red macroalgae to produce fermentable sugars. Bioresource Technology. PMID 26276401 DOI: 10.1016/j.biortech.2015.08.001  1
2015 Min B, Park H, Jang Y, Kim JJ, Kim KH, Pangilinan J, Lipzen A, Riley R, Grigoriev IV, Spatafora JW, Choi IG. Genome sequence of a white rot fungus Schizopora paradoxa KUC8140 for wood decay and mycoremediation. Journal of Biotechnology. PMID 26188242 DOI: 10.1016/j.jbiotec.2015.06.426  1
2015 Lee Y, Nasution O, Choi E, Choi IG, Kim W, Choi W. Transcriptome analysis of acetic-acid-treated yeast cells identifies a large set of genes whose overexpression or deletion enhances acetic acid tolerance. Applied Microbiology and Biotechnology. 99: 6391-403. PMID 26062532 DOI: 10.1007/s00253-015-6706-y  1
2015 Jeong J, Bertsch J, Hess V, Choi S, Choi IG, Chang IS, Müller V. Energy Conservation Model Based on Genomic and Experimental Analyses of a Carbon Monoxide-Utilizing, Butyrate-Forming Acetogen, Eubacterium limosum KIST612. Applied and Environmental Microbiology. 81: 4782-90. PMID 25956767 DOI: 10.1128/AEM.00675-15  1
2015 Kim IJ, Nam KH, Yun EJ, Kim S, Youn HJ, Lee HJ, Choi IG, Kim KH. Optimization of synergism of a recombinant auxiliary activity 9 from Chaetomium globosum with cellulase in cellulose hydrolysis. Applied Microbiology and Biotechnology. PMID 25936375 DOI: 10.1007/s00253-015-6592-3  1
2015 Yun EJ, Choi IG, Kim KH. Red macroalgae as a sustainable resource for bio-based products. Trends in Biotechnology. 33: 247-9. PMID 25818231 DOI: 10.1016/j.tibtech.2015.02.006  1
2015 Kim SK, Jin YS, Choi IG, Park YC, Seo JH. Enhanced tolerance of Saccharomyces cerevisiae to multiple lignocellulose-derived inhibitors through modulation of spermidine contents. Metabolic Engineering. 29: 46-55. PMID 25724339 DOI: 10.1016/j.ymben.2015.02.004  1
2015 Yun EJ, Lee S, Kim HT, Pelton JG, Kim S, Ko HJ, Choi IG, Kim KH. The novel catabolic pathway of 3,6-anhydro-L-galactose, the main component of red macroalgae, in a marine bacterium. Environmental Microbiology. 17: 1677-88. PMID 25156229 DOI: 10.1111/1462-2920.12607  1
2015 An J, Kwon H, Kim E, Lee YM, Ko HJ, Park H, Choi IG, Kim S, Kim KH, Kim W, Choi W. Tolerance to acetic acid is improved by mutations of the TATA-binding protein gene. Environmental Microbiology. 17: 656-69. PMID 24761971 DOI: 10.1111/1462-2920.12489  1
2014 Nasution O, Lee J, Srinivasa K, Choi I, Lee YM, Kim E, Choi W, Kim W. Loss of Dfg5 glycosylphosphatidylinositol-anchored membrane protein confers enhanced heat tolerance in Saccharomyces cerevisiae. Environmental Microbiology. PMID 25297926 DOI: 10.1111/1462-2920.12649  1
2014 Kim IJ, Lee HJ, Choi IG, Kim KH. Synergistic proteins for the enhanced enzymatic hydrolysis of cellulose by cellulase. Applied Microbiology and Biotechnology. 98: 8469-80. PMID 25129610 DOI: 10.1007/s00253-014-6001-3  1
2014 Lee CH, Kim HT, Yun EJ, Lee AR, Kim SR, Kim JH, Choi IG, Kim KH. A novel agarolytic β-galactosidase acts on agarooligosaccharides for complete hydrolysis of agarose into monomers. Applied and Environmental Microbiology. 80: 5965-73. PMID 25038102 DOI: 10.1128/AEM.01577-14  1
2014 Ohm RA, Riley R, Salamov A, Min B, Choi IG, Grigoriev IV. Genomics of wood-degrading fungi. Fungal Genetics and Biology : Fg & B. 72: 82-90. PMID 24853079 DOI: 10.1016/j.fgb.2014.05.001  1
2014 Choi D, Lee SB, Kim S, Min B, Choi IG, Chang IS. Metabolically engineered glucose-utilizing Shewanella strains under anaerobic conditions. Bioresource Technology. 154: 59-66. PMID 24384311 DOI: 10.1016/j.biortech.2013.12.025  1
2014 Hong H, Ko HJ, Choi IG, Park W. Previously undescribed plasmids recovered from activated sludge confer tetracycline resistance and phenotypic changes to Acinetobacter oleivorans DR1. Microbial Ecology. 67: 369-79. PMID 24337108 DOI: 10.1007/s00248-013-0343-8  1
2014 Jung YH, Kim HK, Song DS, Choi IG, Yang TH, Lee HJ, Seung D, Kim KH. Feasibility test of utilizing Saccharophagus degradans 2-40(T) as the source of crude enzyme for the saccharification of lignocellulose. Bioprocess and Biosystems Engineering. 37: 707-10. PMID 23990129 DOI: 10.1007/s00449-013-1040-1  1
2013 Lee HJ, Kim IJ, Kim JF, Choi IG, Kim KH. An expansin from the marine bacterium Hahella chejuensis acts synergistically with xylanase and enhances xylan hydrolysis. Bioresource Technology. 149: 516-9. PMID 24140897 DOI: 10.1016/j.biortech.2013.09.086  1
2013 Kim HT, Yun EJ, Wang D, Chung JH, Choi IG, Kim KH. High temperature and low acid pretreatment and agarase treatment of agarose for the production of sugar and ethanol from red seaweed biomass. Bioresource Technology. 136: 582-7. PMID 23567734 DOI: 10.1016/j.biortech.2013.03.038  1
2013 Kim IJ, Ko HJ, Kim TW, Nam KH, Choi IG, Kim KH. Binding characteristics of a bacterial expansin (BsEXLX1) for various types of pretreated lignocellulose. Applied Microbiology and Biotechnology. 97: 5381-8. PMID 23053073 DOI: 10.1007/s00253-012-4412-6  1
2013 Kim IJ, Ko HJ, Kim TW, Choi IG, Kim KH. Characteristics of the binding of a bacterial expansin (BsEXLX1) to microcrystalline cellulose. Biotechnology and Bioengineering. 110: 401-7. PMID 22949138 DOI: 10.1002/bit.24719  1
2013 Yun EJ, Lee S, Kim JH, Kim BB, Kim HT, Lee SH, Pelton JG, Kang NJ, Choi IG, Kim KH. Enzymatic production of 3,6-anhydro-L-galactose from agarose and its purification and in vitro skin whitening and anti-inflammatory activities. Applied Microbiology and Biotechnology. 97: 2961-70. PMID 22678025 DOI: 10.1007/s00253-012-4184-z  1
2012 Goh KI, Choi IG. Exploring the human diseasome: the human disease network. Briefings in Functional Genomics. 11: 533-42. PMID 23063808 DOI: 10.1093/bfgp/els032  0.16
2012 Jung YH, Kim S, Yang TH, Lee HJ, Seung D, Park YC, Seo JH, Choi IG, Kim KH. Aqueous ammonia pretreatment, saccharification, and fermentation evaluation of oil palm fronds for ethanol production. Bioprocess and Biosystems Engineering. 35: 1497-503. PMID 22644062 DOI: 10.1007/s00449-012-0739-8  1
2012 Roh H, Yun EJ, Lee S, Ko HJ, Kim S, Kim BY, Song H, Lim KI, Kim KH, Choi IG. Genome sequence of Vibrio sp. strain EJY3, an agarolytic marine bacterium metabolizing 3,6-anhydro-L-galactose as a sole carbon source. Journal of Bacteriology. 194: 2773-4. PMID 22535948 DOI: 10.1128/JB.00303-12  1
2012 Kim SJ, Shin SC, Hong SG, Lee YM, Choi IG, Park H. Genome sequence of a novel member of the genus Psychrobacter isolated from Antarctic soil. Journal of Bacteriology. 194: 2403. PMID 22493207 DOI: 10.1128/JB.00234-12  1
2012 Kim SJ, Shin SC, Hong SG, Lee YM, Lee H, Lee J, Choi IG, Park H. Genome sequence of Janthinobacterium sp. strain PAMC 25724, isolated from alpine glacier cryoconite. Journal of Bacteriology. 194: 2096. PMID 22461541 DOI: 10.1128/JB.00096-12  1
2012 Kim HT, Ko HJ, Kim N, Kim D, Lee D, Choi IG, Woo HC, Kim MD, Kim KH. Characterization of a recombinant endo-type alginate lyase (Alg7D) from Saccharophagus degradans. Biotechnology Letters. 34: 1087-92. PMID 22391735 DOI: 10.1007/s10529-012-0876-9  1
2012 Ko HJ, Park E, Song J, Yang TH, Lee HJ, Kim KH, Choi IG. Functional cell surface display and controlled secretion of diverse Agarolytic enzymes by Escherichia coli with a novel ligation-independent cloning vector based on the autotransporter YfaL. Applied and Environmental Microbiology. 78: 3051-8. PMID 22344647 DOI: 10.1128/AEM.07004-11  1
2012 Kim HT, Chung JH, Wang D, Lee J, Woo HC, Choi IG, Kim KH. Depolymerization of alginate into a monomeric sugar acid using Alg17C, an exo-oligoalginate lyase cloned from Saccharophagus degradans 2-40. Applied Microbiology and Biotechnology. 93: 2233-9. PMID 22281843 DOI: 10.1007/s00253-012-3882-x  1
2012 Kim HT, Lee S, Kim KH, Choi IG. The complete enzymatic saccharification of agarose and its application to simultaneous saccharification and fermentation of agarose for ethanol production. Bioresource Technology. 107: 301-6. PMID 22209444 DOI: 10.1016/j.biortech.2011.11.120  1
2012 Ko HJ, Bang WG, Kim KH, Choi IG. Production of p-acetaminophenol by whole-cell catalysis using Escherichia coli overexpressing bacterial aryl acylamidase. Biotechnology Letters. 34: 677-82. PMID 22130742 DOI: 10.1007/s10529-011-0811-5  1
2011 Jung YH, Kim IJ, Han JI, Choi IG, Kim KH. Aqueous ammonia pretreatment of oil palm empty fruit bunches for ethanol production. Bioresource Technology. 102: 9806-9. PMID 21852123 DOI: 10.1016/j.biortech.2011.07.050  1
2011 Ha SC, Lee S, Lee J, Kim HT, Ko HJ, Kim KH, Choi IG. Crystal structure of a key enzyme in the agarolytic pathway, α-neoagarobiose hydrolase from Saccharophagus degradans 2-40. Biochemical and Biophysical Research Communications. 412: 238-44. PMID 21810409 DOI: 10.1016/j.bbrc.2011.07.073  1
2011 Jung YH, Kim IJ, Kim JJ, Oh KK, Han JI, Choi IG, Kim KH. Ethanol production from oil palm trunks treated with aqueous ammonia and cellulase. Bioresource Technology. 102: 7307-12. PMID 21616661 DOI: 10.1016/j.biortech.2011.04.082  1
2011 Roh H, Uguru GC, Ko HJ, Kim S, Kim BY, Goodfellow M, Bull AT, Kim KH, Bibb MJ, Choi IG, Stach JE. Genome sequence of the abyssomicin- and proximicin-producing marine actinomycete Verrucosispora maris AB-18-032. Journal of Bacteriology. 193: 3391-2. PMID 21551311 DOI: 10.1128/JB.05041-11  1
2011 Oh S, Roh H, Ko HJ, Kim S, Kim KH, Lee SE, Chang IS, Kim S, Choi IG. Complete genome sequencing of Lactobacillus acidophilus 30SC, isolated from swine intestine. Journal of Bacteriology. 193: 2882-3. PMID 21478365 DOI: 10.1128/JB.00343-11  1
2011 Roh H, Ko HJ, Kim D, Choi DG, Park S, Kim S, Chang IS, Choi IG. Complete genome sequence of a carbon monoxide-utilizing acetogen, Eubacterium limosum KIST612. Journal of Bacteriology. 193: 307-8. PMID 21036996 DOI: 10.1128/JB.01217-10  1
2010 Ko HJ, Lee EW, Bang WG, Lee CK, Kim KH, Choi IG. Molecular characterization of a novel bacterial aryl acylamidase belonging to the amidase signature enzyme family. Molecules and Cells. 29: 485-92. PMID 20396964 DOI: 10.1007/s10059-010-0060-9  1
2010 Shin MH, Lee do Y, Wohlgemuth G, Choi IG, Fiehn O, Kim KH. Global metabolite profiling of agarose degradation by Saccharophagus degradans 2-40. New Biotechnology. 27: 156-68. PMID 20215059 DOI: 10.1016/j.nbt.2010.02.023  1
2010 Lee HJ, Lee S, Ko HJ, Kim KH, Choi IG. An expansin-like protein from Hahella chejuensis binds cellulose and enhances cellulase activity. Molecules and Cells. 29: 379-85. PMID 20213317 DOI: 10.1007/s10059-010-0033-z  1
2010 Bak JS, Kim MD, Choi IG, Kim KH. Biological pretreatment of rice straw by fermenting with Dichomitus squalens. New Biotechnology. 27: 424-34. PMID 20206309 DOI: 10.1016/j.nbt.2010.02.021  1
2010 Song H, Song BW, Cha MJ, Choi IG, Hwang KC. Modification of mesenchymal stem cells for cardiac regeneration. Expert Opinion On Biological Therapy. 10: 309-19. PMID 20132054 DOI: 10.1517/14712590903455997  1
2010 Shin MH, Lee DY, Skogerson K, Wohlgemuth G, Choi IG, Fiehn O, Kim KH. Global metabolic profiling of plant cell wall polysaccharide degradation by Saccharophagus degradans. Biotechnology and Bioengineering. 105: 477-88. PMID 19806675 DOI: 10.1002/bit.22557  1
2010 Kim HT, Lee S, Lee D, Kim HS, Bang WG, Kim KH, Choi IG. Overexpression and molecular characterization of Aga50D from Saccharophagus degradans 2-40: an exo-type beta-agarase producing neoagarobiose. Applied Microbiology and Biotechnology. 86: 227-34. PMID 19802606 DOI: 10.1007/s00253-009-2256-5  1
2009 Lee S, Lee JY, Ha SC, Jung J, Shin DH, Kim KH, Choi IG. Crystallization and preliminary X-ray analysis of neoagarobiose hydrolase from Saccharophagus degradans 2-40. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 65: 1299-301. PMID 20054134 DOI: 10.1107/S174430910904603X  1
2009 Ko JK, Jung MW, Kim KH, Choi IG. Optimal production of a novel endo-acting beta-1,4-xylanase cloned from Saccharophagus degradans 2-40 into Escherichia coli BL21(DE3). New Biotechnology. 26: 157-64. PMID 19646553 DOI: 10.1016/j.nbt.2009.07.009  1
2009 Bak JS, Ko JK, Choi IG, Park YC, Seo JH, Kim KH. Fungal pretreatment of lignocellulose by Phanerochaete chrysosporium to produce ethanol from rice straw. Biotechnology and Bioengineering. 104: 471-82. PMID 19591194 DOI: 10.1002/bit.22423  1
2009 Ko JK, Bak JS, Jung MW, Lee HJ, Choi IG, Kim TH, Kim KH. Ethanol production from rice straw using optimized aqueous-ammonia soaking pretreatment and simultaneous saccharification and fermentation processes. Bioresource Technology. 100: 4374-80. PMID 19427784 DOI: 10.1016/j.biortech.2009.04.026  1
2009 Kim ES, Lee HJ, Bang WG, Choi IG, Kim KH. Functional characterization of a bacterial expansin from Bacillus subtilis for enhanced enzymatic hydrolysis of cellulose. Biotechnology and Bioengineering. 102: 1342-53. PMID 19058186 DOI: 10.1002/bit.22193  1
2009 Bak JS, Ko JK, Han YH, Lee BC, Choi IG, Kim KH. Improved enzymatic hydrolysis yield of rice straw using electron beam irradiation pretreatment. Bioresource Technology. 100: 1285-90. PMID 18930388 DOI: 10.1016/j.biortech.2008.09.010  1
2008 Kim HS, Chang WC, Hwang KC, Choi IG, Park WK. Effect of propofol on calcium homeostasis in hypoxia-reoxygenated neonatal rat cardiomyocytes European Journal of Pharmacology. 594: 139-145. PMID 18674530 DOI: 10.1016/j.ejphar.2008.07.027  1
2008 Kim SR, Park HJ, Yim do S, Kim HT, Choi IG, Kim KH. Analysis of survival rates and cellular fatty acid profiles of Listeria monocytogenes treated with supercritical carbon dioxide under the influence of cosolvents. Journal of Microbiological Methods. 75: 47-54. PMID 18565606 DOI: 10.1016/j.mimet.2008.04.012  1
2008 Hwang KC, Kim JY, Chang W, Kim DS, Lim S, Kang SM, Song BW, Ha HY, Huh YJ, Choi IG, Hwang DY, Song H, Jang Y, Chung N, Kim SH, et al. Chemicals that modulate stem cell differentiation. Proceedings of the National Academy of Sciences of the United States of America. 105: 7467-71. PMID 18480249 DOI: 10.1073/pnas.0802825105  1
2007 Choi IG, Yu YG. Interaction and assembly of HBV structural proteins: novel target sites of anti-HBV agents. Infectious Disorders Drug Targets. 7: 251-6. PMID 17897061  0.12
2007 Shin DH, Hou J, Chandonia JM, Das D, Choi IG, Kim R, Kim SH. Structure-based inference of molecular functions of proteins of unknown function from Berkeley Structural Genomics Center. Journal of Structural and Functional Genomics. 8: 99-105. PMID 17764033 DOI: 10.1007/s10969-007-9025-4  1
2007 Choi IG, Kim SH. Global extent of horizontal gene transfer. Proceedings of the National Academy of Sciences of the United States of America. 104: 4489-94. PMID 17360551 DOI: 10.1073/pnas.0611557104  1
2006 Choi IG, Kim SH. Evolution of protein structural classes and protein sequence families. Proceedings of the National Academy of Sciences of the United States of America. 103: 14056-61. PMID 16959887 DOI: 10.1073/pnas.0606239103  1
2005 Kim SH, Shin DH, Liu J, Oganesyan V, Chen S, Xu QS, Kim JS, Das D, Schulze-Gahmen U, Holbrook SR, Holbrook EL, Martinez BA, Oganesyan N, DeGiovanni A, Lou Y, ... ... Choi IG, et al. Structural genomics of minimal organisms and protein fold space. Journal of Structural and Functional Genomics. 6: 63-70. PMID 16211501 DOI: 10.1007/s10969-005-2651-9  1
2005 Sims GE, Choi IG, Kim SH. Protein conformational space in higher order phi-Psi maps. Proceedings of the National Academy of Sciences of the United States of America. 102: 618-21. PMID 15640351 DOI: 10.1073/pnas.0408746102  1
2004 Shin DH, Choi IG, Busso D, Jancarik J, Yokota H, Kim R, Kim SH. Structure of OsmC from Escherichia coli: a salt-shock-induced protein. Acta Crystallographica. Section D, Biological Crystallography. 60: 903-11. PMID 15103136 DOI: 10.1107/S0907444904005013  1
2004 Choi IG, Kwon J, Kim SH. Local feature frequency profile: a method to measure structural similarity in proteins. Proceedings of the National Academy of Sciences of the United States of America. 101: 3797-802. PMID 14985506 DOI: 10.1073/pnas.0308656100  1
2003 Kim SH, Shin DH, Choi IG, Schulze-Gahmen U, Chen S, Kim R. Structure-based functional inference in structural genomics. Journal of Structural and Functional Genomics. 4: 129-35. PMID 14649297  1
2003 Choi IG, Shin DH, Brandsen J, Jancarik J, Busso D, Yokota H, Kim R, Kim SH. Crystal structure of a stress inducible protein from Mycoplasma pneumoniae at 2.85 A resolution. Journal of Structural and Functional Genomics. 4: 31-4. PMID 12943365  1
2002 Grigoriev IV, Choi IG. Target selection for structural genomics: a single genome approach. Omics : a Journal of Integrative Biology. 6: 349-62. PMID 12626094 DOI: 10.1089/153623102321112773  1
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