Yifan Cheng - Publications

Biochemistry and Biophysics University of California, San Francisco, San Francisco, CA 

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Year Citation  Score
2019 Morris KL, Jones JR, Halebian M, Wu S, Baker M, Armache JP, Avila Ibarra A, Sessions RB, Cameron AD, Cheng Y, Smith CJ. Cryo-EM of multiple cage architectures reveals a universal mode of clathrin self-assembly. Nature Structural & Molecular Biology. 26: 890-898. PMID 31582853 DOI: 10.1038/s41594-019-0292-0  0.6
2019 Diver MM, Cheng Y, Julius D. Structural insights into TRPM8 inhibition and desensitization. Science (New York, N.Y.). PMID 31488702 DOI: 10.1126/science.aax6672  0.44
2019 Autzen HE, Julius D, Cheng Y. Membrane mimetic systems in CryoEM: keeping membrane proteins in their native environment. Current Opinion in Structural Biology. PMID 31279500 DOI: 10.1016/j.sbi.2019.05.022  0.44
2019 Armache JP, Gamarra N, Johnson SL, Leonard JD, Wu S, Narlikar GJ, Cheng Y. Cryo-EM structures of remodeler-nucleosome intermediates suggest allosteric control through the nucleosome. Elife. 8. PMID 31210637 DOI: 10.7554/eLife.46057  0.6
2019 Dang S, van Goor MK, Asarnow D, Wang Y, Julius D, Cheng Y, van der Wijst J. Structural insight into TRPV5 channel function and modulation. Proceedings of the National Academy of Sciences of the United States of America. PMID 30975749 DOI: 10.1073/pnas.1820323116  0.44
2018 Wang H, Cheng Y, Chen S, Li X, Zhu Z, Zhang W. Impact of Elevated Hemoglobin A1c Levels on Functional Outcome in Patients with Acute Ischemic Stroke. Journal of Stroke and Cerebrovascular Diseases : the Official Journal of National Stroke Association. PMID 30415918 DOI: 10.1016/j.jstrokecerebrovasdis.2018.10.026  0.36
2018 Kintzer AF, Green EM, Dominik PK, Bridges M, Armache JP, Deneka D, Kim SS, Hubbell W, Kossiakoff AA, Cheng Y, Stroud RM. Structural basis for activation of voltage sensor domains in an ion channel TPC1. Proceedings of the National Academy of Sciences of the United States of America. PMID 30190435 DOI: 10.1073/pnas.1805651115  0.6
2018 Heymann JB, Marabini R, Kazemi M, Sorzano COS, Holmdahl M, Mendez JH, Stagg SM, Jonic S, Palovcak E, Armache JP, Zhao J, Cheng Y, Pintilie G, Chiu W, Patwardhan A, et al. The First Single Particle Analysis Map Challenge: A Summary of the Assessments. Journal of Structural Biology. PMID 30114512 DOI: 10.1016/j.jsb.2018.08.010  0.6
2018 Nguyen NX, Armache JP, Lee C, Yang Y, Zeng W, Mootha VK, Cheng Y, Bai XC, Jiang Y. Author Correction: Cryo-EM structure of a fungal mitochondrial calcium uniporter. Nature. PMID 30108362 DOI: 10.1038/s41586-018-0427-1  0.6
2018 Cormier A, Campbell MG, Ito S, Wu S, Lou J, Marks J, Baron JL, Nishimura SL, Cheng Y. Cryo-EM structure of the αvβ8 integrin reveals a mechanism for stabilizing integrin extension. Nature Structural & Molecular Biology. PMID 30061598 DOI: 10.1038/s41594-018-0093-x  0.6
2018 Palovcak E, Wang F, Zheng SQ, Yu Z, Li S, Betegon M, Bulkley D, Agard DA, Cheng Y. A simple and robust procedure for preparing graphene-oxide cryo-EM grids. Journal of Structural Biology. PMID 30017701 DOI: 10.1016/j.jsb.2018.07.007  0.36
2018 Nguyen NX, Armache JP, Lee C, Yang Y, Zeng W, Mootha VK, Cheng Y, Bai XC, Jiang Y. Cryo-EM structure of a fungal mitochondrial calcium uniporter. Nature. PMID 29995855 DOI: 10.1038/s41586-018-0333-6  0.6
2017 Autzen HE, Myasnikov AG, Campbell MG, Asarnow D, Julius D, Cheng Y. Structure of the human TRPM4 ion channel in a lipid nanodisc. Science (New York, N.Y.). PMID 29217581 DOI: 10.1126/science.aar4510  0.44
2017 Jin P, Bulkley D, Guo Y, Zhang W, Guo Z, Huynh W, Wu S, Meltzer S, Cheng T, Jan LY, Jan YN, Cheng Y. Electron cryo-microscopy structure of the mechanotransduction channel NOMPC. Nature. PMID 28658211 DOI: 10.1038/nature22981  0.6
2017 Zheng SQ, Palovcak E, Armache JP, Verba KA, Cheng Y, Agard DA. MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy. Nature Methods. PMID 28250466 DOI: 10.1038/nmeth.4193  0.6
2016 Gao Y, Cao E, Julius D, Cheng Y. TRPV1 structures in nanodiscs reveal mechanisms of ligand and lipid action. Nature. PMID 27281200 DOI: 10.1038/nature17964  1
2016 Frauenfeld J, Löving R, Armache JP, Sonnen AF, Guettou F, Moberg P, Zhu L, Jegerschöld C, Flayhan A, Briggs JA, Garoff H, Löw C, Cheng Y, Nordlund P. A saposin-lipoprotein nanoparticle system for membrane proteins. Nature Methods. PMID 26950744 DOI: 10.1038/nmeth.3801  0.6
2015 Cheng Y, Walz T. The Special Issue of Microscopy on single-particle cryo-electron microscopy. Microscopy (Oxford, England). PMID 26586604 DOI: 10.1093/jmicro/dfv359  1
2015 Wu S, Armache JP, Cheng Y. Single-particle cryo-EM data acquisition by using direct electron detection camera. Microscopy (Oxford, England). PMID 26546989 DOI: 10.1093/jmicro/dfv355  0.6
2015 Li X, Zheng S, Agard DA, Cheng Y. Asynchronous data acquisition and on-the-fly analysis of dose fractionated cryoEM images by UCSFImage. Journal of Structural Biology. PMID 26370395 DOI: 10.1016/j.jsb.2015.09.003  1
2015 Goedert M, Cheng Y. Parkinson's disease: Crystals of a toxic core. Nature. 525: 458-9. PMID 26352470 DOI: 10.1038/nature15630  1
2015 Du J, Lü W, Wu S, Cheng Y, Gouaux E. Glycine receptor mechanism elucidated by electron cryo-microscopy. Nature. PMID 26344198 DOI: 10.1038/nature14853  0.6
2015 Chiu PL, Li X, Li Z, Beckett B, Brilot AF, Grigorieff N, Agard DA, Cheng Y, Walz T. Evaluation of super-resolution performance of the K2 electron-counting camera using 2D crystals of aquaporin-0. Journal of Structural Biology. PMID 26318383 DOI: 10.1016/j.jsb.2015.08.015  1
2015 Paulsen CE, Armache JP, Gao Y, Cheng Y, Julius D. Structure of the TRPA1 ion channel suggests regulatory mechanisms. Nature. 525: 552. PMID 26200340 DOI: 10.1038/nature14871  0.6
2015 Cheng Y. Single-Particle Cryo-EM at Crystallographic Resolution. Cell. 161: 450-7. PMID 25910205 DOI: 10.1016/j.cell.2015.03.049  1
2015 Cheng Y, Grigorieff N, Penczek PA, Walz T. A primer to single-particle cryo-electron microscopy. Cell. 161: 438-49. PMID 25910204 DOI: 10.1016/j.cell.2015.03.050  1
2015 Paulsen CE, Armache JP, Gao Y, Cheng Y, Julius D. Structure of the TRPA1 ion channel suggests regulatory mechanisms. Nature. 520: 511-7. PMID 25855297 DOI: 10.1038/nature14367  1
2015 DiMaio F, Song Y, Li X, Brunner MJ, Xu C, Conticello V, Egelman E, Marlovits TC, Cheng Y, Baker D. Atomic-accuracy models from 4.5-Å cryo-electron microscopy data with density-guided iterative local refinement. Nature Methods. 12: 361-5. PMID 25707030 DOI: 10.1038/nmeth.3286  0.36
2015 Wang RY, Kudryashev M, Li X, Egelman EH, Basler M, Cheng Y, Baker D, DiMaio F. De novo protein structure determination from near-atomic-resolution cryo-EM maps. Nature Methods. 12: 335-8. PMID 25707029 DOI: 10.1038/nmeth.3287  0.36
2015 Abrishami V, Vargas J, Li X, Cheng Y, Marabini R, Sorzano CÓ, Carazo JM. Alignment of direct detection device micrographs using a robust Optical Flow approach. Journal of Structural Biology. 189: 163-76. PMID 25681631 DOI: 10.1016/j.jsb.2015.02.001  0.36
2015 Zhao M, Wu S, Zhou Q, Vivona S, Cipriano DJ, Cheng Y, Brunger AT. Mechanistic insights into the recycling machine of the SNARE complex. Nature. 518: 61-7. PMID 25581794 DOI: 10.1038/nature14148  1
2015 Shen PS, Park J, Qin Y, Li X, Parsawar K, Larson MH, Cox J, Cheng Y, Lambowitz AM, Weissman JS, Brandman O, Frost A. Protein synthesis. Rqc2p and 60S ribosomal subunits mediate mRNA-independent elongation of nascent chains. Science (New York, N.Y.). 347: 75-8. PMID 25554787 DOI: 10.1126/science.1259724  0.36
2015 Kim JM, Wu S, Tomasiak TM, Mergel C, Winter MB, Stiller SB, Robles-Colmanares Y, Stroud RM, Tampé R, Craik CS, Cheng Y. Subnanometre-resolution electron cryomicroscopy structure of a heterodimeric ABC exporter Nature. 517: 396-400. PMID 25363761 DOI: 10.1038/nature13872  1
2014 Booth DS, Cheng Y, Frankel AD. The export receptor Crm1 forms a dimer to promote nuclear export of HIV RNA. Elife. 3: e04121. PMID 25486595 DOI: 10.7554/eLife.04121  1
2014 Bhabha G, Cheng HC, Zhang N, Moeller A, Liao M, Speir JA, Cheng Y, Vale RD. Allosteric communication in the dynein motor domain. Cell. 159: 857-68. PMID 25417161 DOI: 10.1016/j.cell.2014.10.018  0.44
2014 Wang Y, Schnitzbauer J, Hu Z, Li X, Cheng Y, Huang ZL, Huang B. Localization events-based sample drift correction for localization microscopy with redundant cross-correlation algorithm. Optics Express. 22: 15982-91. PMID 24977854 DOI: 10.1364/OE.22.015982  0.36
2014 Minagawa S, Lou J, Seed RI, Cormier A, Wu S, Cheng Y, Murray L, Tsui P, Connor J, Herbst R, Govaerts C, Barker T, Cambier S, Yanagisawa H, Goodsell A, et al. Selective targeting of TGF-β activation to treat fibroinflammatory airway disease. Science Translational Medicine. 6: 241ra79. PMID 24944194 DOI: 10.1126/scitranslmed.3008074  0.6
2014 Liao M, Cao E, Julius D, Cheng Y. Single particle electron cryo-microscopy of a mammalian ion channel. Current Opinion in Structural Biology. 27: 1-7. PMID 24681231 DOI: 10.1016/j.sbi.2014.02.005  1
2014 Penczek PA, Fang J, Li X, Cheng Y, Loerke J, Spahn CM. CTER-rapid estimation of CTF parameters with error assessment. Ultramicroscopy. 140: 9-19. PMID 24562077 DOI: 10.1016/j.ultramic.2014.01.009  0.36
2013 Cao E, Liao M, Cheng Y, Julius D. TRPV1 structures in distinct conformations reveal activation mechanisms. Nature. 504: 113-8. PMID 24305161 DOI: 10.1038/nature12823  1
2013 Liao M, Cao E, Julius D, Cheng Y. Structure of the TRPV1 ion channel determined by electron cryo-microscopy. Nature. 504: 107-12. PMID 24305160 DOI: 10.1038/nature12822  1
2013 Asensio CS, Sirkis DW, Maas JW, Egami K, To TL, Brodsky FM, Shu X, Cheng Y, Edwards RH. Self-assembly of VPS41 promotes sorting required for biogenesis of the regulated secretory pathway. Developmental Cell. 27: 425-37. PMID 24210660 DOI: 10.1016/j.devcel.2013.10.007  1
2013 Li X, Zheng SQ, Egami K, Agard DA, Cheng Y. Influence of electron dose rate on electron counting images recorded with the K2 camera. Journal of Structural Biology. 184: 251-60. PMID 23968652 DOI: 10.1016/j.jsb.2013.08.005  1
2013 Li X, Mooney P, Zheng S, Booth CR, Braunfeld MB, Gubbens S, Agard DA, Cheng Y. Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM. Nature Methods. 10: 584-90. PMID 23644547 DOI: 10.1038/nmeth.2472  1
2013 Park S, Li X, Kim HM, Singh CR, Tian G, Hoyt MA, Lovell S, Battaile KP, Zolkiewski M, Coffino P, Roelofs J, Cheng Y, Finley D. Reconfiguration of the proteasome during chaperone-mediated assembly. Nature. 497: 512-6. PMID 23644457 DOI: 10.1038/nature12123  1
2013 Canzio D, Liao M, Naber N, Pate E, Larson A, Wu S, Marina DB, Garcia JF, Madhani HD, Cooke R, Schuck P, Cheng Y, Narlikar GJ. A conformational switch in HP1 releases auto-inhibition to drive heterochromatin assembly. Nature. 496: 377-81. PMID 23485968 DOI: 10.1038/nature12032  1
2013 Avila-Sakar A, Li X, Zheng SQ, Cheng Y. Recording high-resolution images of two-dimensional crystals of membrane proteins. Methods in Molecular Biology (Clifton, N.J.). 955: 129-52. PMID 23132059 DOI: 10.1007/978-1-62703-176-9_8  0.68
2012 Schneidman-Duhovny D, Rossi A, Avila-Sakar A, Kim SJ, Velázquez-Muriel J, Strop P, Liang H, Krukenberg KA, Liao M, Kim HM, Sobhanifar S, Dötsch V, Rajpal A, Pons J, Agard DA, ... Cheng Y, et al. A method for integrative structure determination of protein-protein complexes. Bioinformatics (Oxford, England). 28: 3282-9. PMID 23093611 DOI: 10.1093/bioinformatics/bts628  1
2012 Martinez-Avila O, Wu S, Kim SJ, Cheng Y, Khan F, Samudrala R, Sali A, Horst JA, Habelitz S. Self-assembly of filamentous amelogenin requires calcium and phosphate: from dimers via nanoribbons to fibrils. Biomacromolecules. 13: 3494-502. PMID 22974364 DOI: 10.1021/bm300942c  1
2012 Wu S, Avila-Sakar A, Kim J, Booth DS, Greenberg CH, Rossi A, Liao M, Li X, Alian A, Griner SL, Juge N, Yu Y, Mergel CM, Chaparro-Riggers J, Strop P, ... ... Cheng Y, et al. Fabs enable single particle cryoEM studies of small proteins. Structure (London, England : 1993). 20: 582-92. PMID 22483106 DOI: 10.1016/j.str.2012.02.017  1
2011 Martinez-Avila OM, Wu S, Cheng Y, Lee R, Khan F, Habelitz S. Self-assembly of amelogenin proteins at the water-oil interface. European Journal of Oral Sciences. 119: 75-82. PMID 22243231 DOI: 10.1111/j.1600-0722.2011.00907.x  0.6
2011 Booth DS, Avila-Sakar A, Cheng Y. Visualizing proteins and macromolecular complexes by negative stain EM: from grid preparation to image acquisition. Journal of Visualized Experiments : Jove. PMID 22215030 DOI: 10.3791/3227  1
2011 Zheng SQ, Branlund E, Kesthelyi B, Braunfeld MB, Cheng Y, Sedat JW, Agard DA. A distributed multi-GPU system for high speed electron microscopic tomographic reconstruction. Ultramicroscopy. 111: 1137-43. PMID 21741915 DOI: 10.1016/j.ultramic.2011.03.015  1
2011 Nakamura K, Nemani VM, Azarbal F, Skibinski G, Levy JM, Egami K, Munishkina L, Zhang J, Gardner B, Wakabayashi J, Sesaki H, Cheng Y, Finkbeiner S, Nussbaum RL, Masliah E, et al. Direct membrane association drives mitochondrial fission by the Parkinson disease-associated protein alpha-synuclein. The Journal of Biological Chemistry. 286: 20710-26. PMID 21489994 DOI: 10.1074/jbc.M110.213538  1
2011 He X, Wu S, Martinez-Avila O, Cheng Y, Habelitz S. Self-aligning amelogenin nanoribbons in oil-water system. Journal of Structural Biology. 174: 203-12. PMID 21134461 DOI: 10.1016/j.jsb.2010.11.027  0.6
2010 Hite RK, Schenk AD, Li Z, Cheng Y, Walz T. Collecting electron crystallographic data of two-dimensional protein crystals. Methods in Enzymology. 481: 251-82. PMID 20887861 DOI: 10.1016/S0076-6879(10)81011-0  1
2010 Daugherty MD, Booth DS, Jayaraman B, Cheng Y, Frankel AD. HIV Rev response element (RRE) directs assembly of the Rev homooligomer into discrete asymmetric complexes. Proceedings of the National Academy of Sciences of the United States of America. 107: 12481-6. PMID 20616058 DOI: 10.1073/pnas.1007022107  1
2010 Li X, Grigorieff N, Cheng Y. GPU-enabled FREALIGN: accelerating single particle 3D reconstruction and refinement in Fourier space on graphics processors. Journal of Structural Biology. 172: 407-12. PMID 20558298 DOI: 10.1016/j.jsb.2010.06.010  1
2010 Lenassi M, Cagney G, Liao M, Vaupotic T, Bartholomeeusen K, Cheng Y, Krogan NJ, Plemenitas A, Peterlin BM. HIV Nef is secreted in exosomes and triggers apoptosis in bystander CD4+ T cells. Traffic (Copenhagen, Denmark). 11: 110-22. PMID 19912576 DOI: 10.1111/j.1600-0854.2009.01006.x  1
2010 Li Z, Hite RK, Cheng Y, Walz T. Evaluation of imaging plates as recording medium for images of negatively stained single particles and electron diffraction patterns of two-dimensional crystals. Journal of Electron Microscopy. 59: 53-63. PMID 19643814 DOI: 10.1093/jmicro/dfp036  1
2009 Racki LR, Yang JG, Naber N, Partensky PD, Acevedo A, Purcell TJ, Cooke R, Cheng Y, Narlikar GJ. The chromatin remodeller ACF acts as a dimeric motor to space nucleosomes. Nature. 462: 1016-21. PMID 20033039 DOI: 10.1038/nature08621  1
2009 Cheng Y, Walz T. The advent of near-atomic resolution in single-particle electron microscopy. Annual Review of Biochemistry. 78: 723-42. PMID 19489732 DOI: 10.1146/annurev.biochem.78.070507.140543  1
2009 Cheng Y. Toward an atomic model of the 26S proteasome Current Opinion in Structural Biology. 19: 203-208. PMID 19286367 DOI: 10.1016/j.sbi.2009.02.004  1
2008 Ballister ER, Lai AH, Zuckermann RN, Cheng Y, Mougous JD. In vitro self-assembly of tailorable nanotubes from a simple protein building block. Proceedings of the National Academy of Sciences of the United States of America. 105: 3733-8. PMID 18310321 DOI: 10.1073/pnas.0712247105  1
2008 Gonen T, Hite RK, Cheng Y, Petre BM, Kistler J, Walz T. Polymorphic assemblies and crystalline arrays of lens tetraspanin MP20. Journal of Molecular Biology. 376: 380-92. PMID 18166196 DOI: 10.1016/j.jmb.2007.09.001  1
2007 Ohi MD, Feoktistova A, Ren L, Yip C, Cheng Y, Chen JS, Yoon HJ, Wall JS, Huang Z, Penczek PA, Gould KL, Walz T. Structural organization of the anaphase-promoting complex bound to the mitotic activator Slp1. Molecular Cell. 28: 871-85. PMID 18082611 DOI: 10.1016/j.molcel.2007.10.003  1
2007 Smith DM, Chang SC, Park S, Finley D, Cheng Y, Goldberg AL. Docking of the proteasomal ATPases' carboxyl termini in the 20S proteasome's alpha ring opens the gate for substrate entry. Molecular Cell. 27: 731-44. PMID 17803938 DOI: 10.1016/j.molcel.2007.06.033  1
2007 Cheng Y, Walz T. Reconstructing the endocytotic machinery. Methods in Cell Biology. 79: 463-87. PMID 17327169 DOI: 10.1016/S0091-679X(06)79018-5  1
2007 Cheng Y, Boll W, Kirchhausen T, Harrison SC, Walz T. Cryo-electron tomography of clathrin-coated vesicles: structural implications for coat assembly. Journal of Molecular Biology. 365: 892-9. PMID 17095010 DOI: 10.1016/j.jmb.2006.10.036  1
2006 Nishida N, Xie C, Shimaoka M, Cheng Y, Walz T, Springer TA. Activation of leukocyte beta2 integrins by conversion from bent to extended conformations. Immunity. 25: 583-94. PMID 17045822 DOI: 10.1016/j.immuni.2006.07.016  1
2006 Liu J, Wu S, Reedy MC, Winkler H, Lucaveche C, Cheng Y, Reedy MK, Taylor KA. Electron tomography of swollen rigor fibers of insect flight muscle reveals a short and variably angled S2 domain. Journal of Molecular Biology. 362: 844-60. PMID 16949613 DOI: 10.1016/j.jmb.2006.07.084  1
2006 Fotin A, Kirchhausen T, Grigorieff N, Harrison SC, Walz T, Cheng Y. Structure determination of clathrin coats to subnanometer resolution by single particle cryo-electron microscopy. Journal of Structural Biology. 156: 453-60. PMID 16908193 DOI: 10.1016/j.jsb.2006.07.001  1
2006 Nakagawa T, Cheng Y, Sheng M, Walz T. Three-dimensional structure of an AMPA receptor without associated stargazin/TARP proteins. Biological Chemistry. 387: 179-87. PMID 16497150 DOI: 10.1515/BC.2006.024  1
2006 Cheng Y, Wolf E, Larvie M, Zak O, Aisen P, Grigorieff N, Harrison SC, Walz T. Single particle reconstructions of the transferrin-transferrin receptor complex obtained with different specimen preparation techniques. Journal of Molecular Biology. 355: 1048-65. PMID 16343539 DOI: 10.1016/j.jmb.2005.11.021  1
2005 Cheng Y, Zak O, Aisen P, Harrison SC, Walz T. Single particle reconstruction of the human apo-transferrin-transferrin receptor complex. Journal of Structural Biology. 152: 204-10. PMID 16343946 DOI: 10.1016/j.jsb.2005.10.006  1
2005 Smith DM, Kafri G, Cheng Y, Ng D, Walz T, Goldberg AL. ATP binding to PAN or the 26S ATPases causes association with the 20S proteasome, gate opening, and translocation of unfolded proteins. Molecular Cell. 20: 687-98. PMID 16337593 DOI: 10.1016/j.molcel.2005.10.019  1
2005 Gonen T, Cheng Y, Sliz P, Hiroaki Y, Fujiyoshi Y, Harrison SC, Walz T. Lipid-protein interactions in double-layered two-dimensional AQP0 crystals. Nature. 438: 633-8. PMID 16319884 DOI: 10.1038/nature04321  1
2005 Nakagawa T, Cheng Y, Ramm E, Sheng M, Walz T. Structure and different conformational states of native AMPA receptor complexes. Nature. 433: 545-9. PMID 15690046 DOI: 10.1038/nature03328  1
2004 Fotin A, Cheng Y, Grigorieff N, Walz T, Harrison SC, Kirchhausen T. Structure of an auxilin-bound clathrin coat and its implications for the mechanism of uncoating. Nature. 432: 649-53. PMID 15502813 DOI: 10.1038/nature03078  1
2004 Fotin A, Cheng Y, Sliz P, Grigorieff N, Harrison SC, Kirchhausen T, Walz T. Molecular model for a complete clathrin lattice from electron cryomicroscopy. Nature. 432: 573-9. PMID 15502812 DOI: 10.1038/nature03079  1
2004 Gonen T, Cheng Y, Kistler J, Walz T. Aquaporin-0 membrane junctions form upon proteolytic cleavage. Journal of Molecular Biology. 342: 1337-45. PMID 15351655 DOI: 10.1016/j.jmb.2004.07.076  1
2004 Gonen T, Sliz P, Kistler J, Cheng Y, Walz T. Aquaporin-0 membrane junctions reveal the structure of a closed water pore. Nature. 429: 193-7. PMID 15141214 DOI: 10.1038/nature02503  1
2004 Ohi M, Li Y, Cheng Y, Walz T. Negative Staining and Image Classification - Powerful Tools in Modern Electron Microscopy. Biological Procedures Online. 6: 23-34. PMID 15103397 DOI: 10.1251/bpo70  1
2004 Chen B, Cheng Y, Calder L, Harrison SC, Reinherz EL, Skehel JJ, Wiley DC. A chimeric protein of simian immunodeficiency virus envelope glycoprotein gp140 and Escherichia coli aspartate transcarbamoylase. Journal of Virology. 78: 4508-16. PMID 15078931 DOI: 10.1128/JVI.78.9.4508-4516.2004  1
2004 Cheng Y, Zak O, Aisen P, Harrison SC, Walz T. Structure of the human transferrin receptor-transferrin complex. Cell. 116: 565-76. PMID 14980223 DOI: 10.1016/S0092-8674(04)00130-8  1
2003 Toth EA, Li Y, Sawaya MR, Cheng Y, Ellenberger T. The crystal structure of the bifunctional primase-helicase of bacteriophage T7 Molecular Cell. 12: 1113-1123. PMID 14636571 DOI: 10.1016/S1097-2765(03)00442-8  1
Low-probability matches
2017 Zhou CY, Stoddard CI, Johnston JB, Trnka MJ, Echeverria I, Palovcak E, Sali A, Burlingame AL, Cheng Y, Narlikar GJ. Regulation of Rvb1/Rvb2 by a Domain within the INO80 Chromatin Remodeling Complex Implicates the Yeast Rvbs as Protein Assembly Chaperones. Cell Reports. 19: 2033-2044. PMID 28591576 DOI: 10.1016/j.celrep.2017.05.029  0.2
2013 Qian MX, Pang Y, Liu CH, Haratake K, Du BY, Ji DY, Wang GF, Zhu QQ, Song W, Yu Y, Zhang XX, Huang HT, Miao S, Chen LB, Zhang ZH, ... ... Cheng Y, et al. Acetylation-mediated proteasomal degradation of core histones during DNA repair and spermatogenesis. Cell. 153: 1012-24. PMID 23706739 DOI: 10.1016/j.cell.2013.04.032  0.2
2010 Yu Y, Smith DM, Kim HM, Rodriguez V, Goldberg AL, Cheng Y. Interactions of PAN's C-termini with archaeal 20S proteasome and implications for the eukaryotic proteasome-ATPase interactions. The Embo Journal. 29: 692-702. PMID 20019667 DOI: 10.1038/emboj.2009.382  0.2
2008 Rabl J, Smith DM, Yu Y, Chang SC, Goldberg AL, Cheng Y. Mechanism of gate opening in the 20S proteasome by the proteasomal ATPases. Molecular Cell. 30: 360-8. PMID 18471981 DOI: 10.1016/j.molcel.2008.03.004  0.2
2018 Binning JM, Smith AM, Hultquist JF, Craik CS, Caretta N, Campbell MG, Burton L, La Greca F, McGregor MJ, Ta HM, Bartholomeeusen K, Peterlin BM, Krogan NJ, Sevillano N, Cheng Y, et al. Fab-based inhibitors reveal ubiquitin independent functions for HIV Vif neutralization of APOBEC3 restriction factors. Plos Pathogens. 14: e1006830. PMID 29304101 DOI: 10.1371/journal.ppat.1006830  0.12
2019 Mao G, Alemayehu DG, Yang Y, Wen T, Ou Y, Cheng Y, Ren Z. The Effect of Intraoperative Vertebral Anesthesia on Osteoporotic Fractures Treated With Percutaneous Kyphoplasty: A Prospective Cohort Study. Clinical Spine Surgery. PMID 31021875 DOI: 10.1097/BSD.0000000000000823  0.08
2018 Stoddard CI, Feng S, Campbell MG, Liu W, Wang H, Zhong X, Bernatavichute Y, Cheng Y, Jacobsen SE, Narlikar GJ. A Nucleosome Bridging Mechanism for Activation of a Maintenance DNA Methyltransferase. Molecular Cell. PMID 30415948 DOI: 10.1016/j.molcel.2018.10.006  0.08
2018 Guo C, Yang K, Yan Y, Yan D, Cheng Y, Yan X, Qian N, Zhou Q, Chen B, Jiang M, Zhou H, Li C, Wang F, Qi J, Xu X, et al. SF-deferoxamine, a bone-seeking angiogenic drug, prevents bone loss in estrogen-deficient mice. Bone. PMID 30385424 DOI: 10.1016/j.bone.2018.10.025  0.04
2015 Barad BA, Echols N, Wang RY, Cheng Y, DiMaio F, Adams PD, Fraser JS. EMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy. Nature Methods. 12: 943-6. PMID 26280328 DOI: 10.1038/nmeth.3541  0.04
2013 Cheng Y, Su Q, Shao B, Cheng J, Wang H, Wang L, Lin Z, Ruan L, ZhuGe Q, Jin K. 17 β -Estradiol attenuates poststroke depression and increases neurogenesis in female ovariectomized rats. Biomed Research International. 2013: 392434. PMID 24307996 DOI: 10.1155/2013/392434  0.04
2019 Rosen LE, Klebba JE, Asfaha JB, Ghent CM, Campbell MG, Cheng Y, Morgan DO. Cohesin cleavage by separase is enhanced by a substrate motif distinct from the cleavage site. Nature Communications. 10: 5189. PMID 31729382 DOI: 10.1038/s41467-019-13209-y  0.01
2019 Harel ET, Drake PM, Barfield RM, Lui I, Farr-Jones S, Van't Veer L, Gartner ZJ, Green EM, Lourenço AL, Cheng Y, Hann BC, Rabuka D, Craik CS. Antibody-Drug Conjugates Targeting the Urokinase Receptor (uPAR) as a Possible Treatment of Aggressive Breast Cancer. Antibodies (Basel, Switzerland). 8. PMID 31694242 DOI: 10.3390/antib8040054  0.01
2019 Jia D, Lin W, Tang H, Cheng Y, Xu K, He Y, Geng W, Dai Q. Integrative analysis of DNA methylation and gene expression to identify key epigenetic genes in glioblastoma. Aging. 11. PMID 31395792 DOI: 10.18632/aging.102139  0.01
2019 Feng S, Dang S, Han TW, Ye W, Jin P, Cheng T, Li J, Jan YN, Jan LY, Cheng Y. Cryo-EM Studies of TMEM16F Calcium-Activated Ion Channel Suggest Features Important for Lipid Scrambling. Cell Reports. 28: 1385. PMID 31365878 DOI: 10.1016/j.celrep.2019.07.052  0.01
2019 Feng G, Cheng Y, Worobo RW, Borca-Tasciuc DA, Moraru CI. Nanoporous anodic alumina reduces Staphylococcus biofilm formation. Letters in Applied Microbiology. PMID 31357240 DOI: 10.1111/lam.13201  0.01
2019 Cheng Y, Chen Y, Zhou C, Shen L, Tu F, Xu J, Liu C. For colorectal cancer patients with type II diabetes, could metformin improve the survival rate? A meta-analysis. Clinics and Research in Hepatology and Gastroenterology. PMID 31300371 DOI: 10.1016/j.clinre.2019.06.009  0.01
2019 Feng S, Dang S, Han TW, Ye W, Jin P, Cheng T, Li J, Jan YN, Jan LY, Cheng Y. Cryo-EM Studies of TMEM16F Calcium-Activated Ion Channel Suggest Features Important for Lipid Scrambling. Cell Reports. 28: 567-579.e4. PMID 31291589 DOI: 10.1016/j.celrep.2019.06.023  0.01
2019 Zhang Y, Wang S, Fan X, Xin J, Cheng Y. A temperature indicator for heavy air pollution risks (TIP). The Science of the Total Environment. 678: 712-720. PMID 31078862 DOI: 10.1016/j.scitotenv.2019.05.006  0.01
2019 Huang Y, Cheng Y, Shao B, Zhou X, Liang H, Zhuang J, Bi Y. Propensity Score-Matched Analysis of Lesion Patterns in Stroke Patients With Patent Foramen Ovale and Patients With Spontaneous Intracranial Artery Dissection. Frontiers in Neurology. 10: 418. PMID 31068900 DOI: 10.3389/fneur.2019.00418  0.01
2019 Basu K, Green EM, Cheng Y, Craik CS. Why recombinant antibodies - benefits and applications. Current Opinion in Biotechnology. 60: 153-158. PMID 30849700 DOI: 10.1016/j.copbio.2019.01.012  0.01
2019 Cheng Y, Feng G, Moraru CI. Micro- and Nanotopography Sensitive Bacterial Attachment Mechanisms: A Review. Frontiers in Microbiology. 10: 191. PMID 30846973 DOI: 10.3389/fmicb.2019.00191  0.01
2018 Zhang Y, Bulkley DP, Xin Y, Roberts KJ, Asarnow DE, Sharma A, Myers BR, Cho W, Cheng Y, Beachy PA. Structural Basis for Cholesterol Transport-like Activity of the Hedgehog Receptor Patched. Cell. PMID 30415841 DOI: 10.1016/j.cell.2018.10.026  0.01
2018 Takasaka N, Seed RI, Cormier A, Bondesson AJ, Lou J, Elattma A, Ito S, Yanagisawa H, Hashimoto M, Ma R, Levine MD, Publicover J, Potts R, Jespersen JM, Campbell MG, ... Cheng Y, et al. Integrin αvβ8-expressing tumor cells evade host immunity by regulating TGF-β activation in immune cells. Jci Insight. 3. PMID 30333313 DOI: 10.1172/jci.insight.122591  0.01
2018 Cheng Y. Membrane protein structural biology in the era of single particle cryo-EM. Current Opinion in Structural Biology. 52: 58-63. PMID 30219656 DOI: 10.1016/j.sbi.2018.08.008  0.01
2018 Cheng Y. Single-particle cryo-EM-How did it get here and where will it go. Science (New York, N.Y.). 361: 876-880. PMID 30166484 DOI: 10.1126/science.aat4346  0.01
2018 Griep ER, Cheng Y, Moraru CI. Efficient removal of spores from skim milk using cold microfiltration: Spore size and surface property considerations. Journal of Dairy Science. PMID 30146287 DOI: 10.3168/jds.2018-14888  0.01
2017 Dang S, Feng S, Tien J, Peters CJ, Bulkley D, Lolicato M, Zhao J, Zuberbühler K, Ye W, Qi L, Chen T, Craik CS, Nung Jan Y, Minor DL, Cheng Y, et al. Cryo-EM structures of the TMEM16A calcium-activated chloride channel. Nature. PMID 29236684 DOI: 10.1038/nature25024  0.01
2017 Cheng Y, Glaeser RM, Nogales E. How Cryo-EM Became so Hot. Cell. 171: 1229-1231. PMID 29195065 DOI: 10.1016/j.cell.2017.11.016  0.01
2017 Cheng Y, Moraru CI. Long-range interactions keep bacterial cells from liquid-solid interfaces: Evidence of a bacteria exclusion zone near Nafion surfaces and possible implications for bacterial attachment. Colloids and Surfaces. B, Biointerfaces. 162: 16-24. PMID 29132042 DOI: 10.1016/j.colsurfb.2017.11.016  0.01
2017 Smith AAA, Autzen HE, Laursen T, Wu V, Yen M, Hall A, Hansen SD, Cheng Y, Xu T. Controlling Styrene Maleic acid lipid particles through RAFT. Biomacromolecules. PMID 28934548 DOI: 10.1021/acs.biomac.7b01136  0.01
2017 Yu T, Zhang W, Lin Y, Li Q, Xue J, Cai Z, Cheng Y, Shao B. Prognostic value of serum thioredoxin levels in ischemic stroke. Neurological Research. 1-8. PMID 28828929 DOI: 10.1080/01616412.2017.1359882  0.01
2016 Wang RY, Song Y, Barad BA, Cheng Y, Fraser JS, DiMaio F. Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta. Elife. 5. PMID 27669148 DOI: 10.7554/eLife.17219  0.04
2016 Su Q, Cheng Y, Jin K, Cheng J, Lin Y, Lin Z, Wang L, Shao B. Estrogen therapy increases BDNF expression and improves post-stroke depression in ovariectomy-treated rats. Experimental and Therapeutic Medicine. 12: 1843-1848. PMID 27602095 DOI: 10.3892/etm.2016.3531  0.01
2015 Feng G, Cheng Y, Wang SY, Borca-Tasciuc DA, Worobo RW, Moraru CI. Bacterial attachment and biofilm formation on surfaces are reduced by small-diameter nanoscale pores: how small is small enough? Npj Biofilms and Microbiomes. 1: 15022. PMID 28721236 DOI: 10.1038/npjbiofilms.2015.22  0.01
2015 Rosenberg OS, Dovala D, Li X, Connolly L, Bendebury A, Finer-Moore J, Holton J, Cheng Y, Stroud RM, Cox JS. Substrates Control Multimerization and Activation of the Multi-Domain ATPase Motor of Type VII Secretion. Cell. 161: 501-12. PMID 25865481 DOI: 10.1016/j.cell.2015.03.040  0.36
2014 Feng G, Cheng Y, Wang SY, Hsu LC, Feliz Y, Borca-Tasciuc DA, Worobo RW, Moraru CI. Alumina surfaces with nanoscale topography reduce attachment and biofilm formation by Escherichia coli and Listeria spp. Biofouling. 30: 1253-68. PMID 25427545 DOI: 10.1080/08927014.2014.976561  0.01
2014 Li J, Liu D, Hua R, Zhang J, Liu W, Huo Y, Cheng Y, Hong J, Sun Y. Long non-coding RNAs expressed in pancreatic ductal adenocarcinoma and lncRNA BC008363 an independent prognostic factor in PDAC. Pancreatology : Official Journal of the International Association of Pancreatology (Iap) ... [Et Al.]. 14: 385-90. PMID 25200694 DOI: 10.1016/j.pan.2014.07.013  0.01
2014 Lu J, Yu Y, Zhu I, Cheng Y, Sun PD. Structural mechanism of serum amyloid A-mediated inflammatory amyloidosis. Proceedings of the National Academy of Sciences of the United States of America. 111: 5189-94. PMID 24706838 DOI: 10.1073/pnas.1322357111  0.01
2012 Shao B, Cheng Y, Jin K. Estrogen, neuroprotection and neurogenesis after ischemic stroke. Current Drug Targets. 13: 188-98. PMID 22204318  0.01
2011 Kim HM, Yu Y, Cheng Y. Structure characterization of the 26S proteasome. Biochimica Et Biophysica Acta. 1809: 67-79. PMID 20800708 DOI: 10.1016/j.bbagrm.2010.08.008  0.01
2009 Kim HZ, Jung K, Kim HM, Cheng Y, Koh GY. A designed angiopoietin-2 variant, pentameric COMP-Ang2, strongly activates Tie2 receptor and stimulates angiogenesis. Biochimica Et Biophysica Acta. 1793: 772-80. PMID 19339208 DOI: 10.1016/j.bbamcr.2009.01.018  0.01
2008 Frey G, Peng H, Rits-Volloch S, Morelli M, Cheng Y, Chen B. A fusion-intermediate state of HIV-1 gp41 targeted by broadly neutralizing antibodies. Proceedings of the National Academy of Sciences of the United States of America. 105: 3739-44. PMID 18322015 DOI: 10.1073/pnas.0800255105  0.01
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