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Yifan Cheng - Publications

Affiliations: 
Biochemistry and Biophysics University of California, San Francisco, San Francisco, CA 
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Year Citation  Score
2023 Chio US, Palovcak E, Autzen AAA, Autzen HE, Muñoz EN, Yu Z, Wang F, Agard DA, Armache JP, Narlikar GJ, Cheng Y. Functionalized graphene-oxide grids enable high-resolution cryo-EM structures of the SNF2h-nucleosome complex without crosslinking. Biorxiv : the Preprint Server For Biology. PMID 37546986 DOI: 10.1101/2023.06.20.545796  0.79
2023 Wu H, Muñoz EN, Hsieh LJ, Chio US, Gourdet MA, Narlikar GJ, Cheng Y. Reorientation of INO80 on hexasomes reveals basis for mechanistic versatility. Science (New York, N.Y.). PMID 37384669 DOI: 10.1126/science.adf4197  0.738
2023 Gupta A, Lentzsch AM, Siegel A, Yu Z, Chio US, Cheng Y, Shan SO. Dodecamer assembly of a metazoan AAA chaperone couples substrate extraction to refolding. Science Advances. 9: eadf5336. PMID 37163603 DOI: 10.1126/sciadv.adf5336  0.776
2022 Zhao J, Makhija S, Zhou C, Zhang H, Wang Y, Muralidharan M, Huang B, Cheng Y. Structural insights into the human PA28-20S proteasome enabled by efficient tagging and purification of endogenous proteins. Proceedings of the National Academy of Sciences of the United States of America. 119: e2207200119. PMID 35858375 DOI: 10.1073/pnas.2207200119  0.475
2021 Verba K, Gupta M, Azumaya C, Moritz M, Pourmal S, Diallo A, Merz G, Jang G, Bouhaddou M, Fossati A, Brilot A, Diwanji D, Hernandez E, Herrera N, Kratochvil H, ... ... Cheng Y, et al. CryoEM and AI reveal a structure of SARS-CoV-2 Nsp2, a multifunctional protein involved in key host processes. Research Square. PMID 34031651 DOI: 10.21203/rs.3.rs-515215/v1  0.797
2021 Gupta M, Azumaya CM, Moritz M, Pourmal S, Diallo A, Merz GE, Jang G, Bouhaddou M, Fossati A, Brilot AF, Diwanji D, Hernandez E, Herrera N, Kratochvil HT, Lam VL, ... ... Cheng Y, et al. CryoEM and AI reveal a structure of SARS-CoV-2 Nsp2, a multifunctional protein involved in key host processes. Biorxiv : the Preprint Server For Biology. PMID 34013269 DOI: 10.1101/2021.05.10.443524  0.797
2020 Palovcak E, Asarnow D, Campbell MG, Yu Z, Cheng Y. Enhancing the signal-to-noise ratio and generating contrast for cryo-EM images with convolutional neural networks. Iucrj. 7: 1142-1150. PMID 33209325 DOI: 10.1107/S2052252520013184  0.661
2020 Gordon DE, Hiatt J, Bouhaddou M, Rezelj VV, Ulferts S, Braberg H, Jureka AS, Obernier K, Guo JZ, Batra J, Kaake RM, Weckstein AR, Owens TW, Gupta M, Pourmal S, ... ... Cheng Y, et al. Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms. Science (New York, N.Y.). PMID 33060197 DOI: 10.1126/science.abe9403  0.766
2020 Yu Z, Yu Y, Wang F, Myasnikov AG, Coffino P, Cheng Y. Allosteric coupling between α-rings of the 20S proteasome. Nature Communications. 11: 4580. PMID 32917864 DOI: 10.1038/S41467-020-18415-7  0.33
2020 Yu Y, Liu H, Yu Z, Witkowska HE, Cheng Y. Stoichiometry of Nucleotide Binding to Proteasome AAA+ ATPase Hexamer Established by Native Mass Spectrometry. Molecular & Cellular Proteomics : McP. PMID 32883800 DOI: 10.1074/Mcp.Ra120.002067  0.351
2020 Bai Y, Yu Z, Ackerman L, Zhang Y, Bonde J, Li W, Cheng Y, Habelitz S. Protein nanoribbons template enamel mineralization. Proceedings of the National Academy of Sciences of the United States of America. PMID 32737162 DOI: 10.1073/Pnas.2007838117  0.337
2020 Zhao J, Lin King JV, Paulsen CE, Cheng Y, Julius D. Irritant-evoked activation and calcium modulation of the TRPA1 receptor. Nature. PMID 32641835 DOI: 10.1038/S41586-020-2480-9  0.58
2020 van Goor MK, de Jager L, Cheng Y, van der Wijst J. High-resolution structures of TRPV channels: unveiling a functionally diverse group of ion channels. Protein Science : a Publication of the Protein Society. PMID 32232875 DOI: 10.1002/Pro.3861  0.311
2020 Campbell MG, Cormier A, Ito S, Seed RI, Bondesson AJ, Lou J, Marks JD, Baron JL, Cheng Y, Nishimura SL. Cryo-EM Reveals Integrin-Mediated TGF-β Activation without Release from Latent TGF-β. Cell. PMID 31955848 DOI: 10.1016/J.Cell.2019.12.030  0.674
2020 Smith AA, Autzen HE, Faust B, Mann JL, Muir BW, Howard S, Postma A, Spakowitz AJ, Cheng Y, Appel EA. Lipid Nanodiscs via Ordered Copolymers Chem. 6: 2782-2795. DOI: 10.1016/J.Chempr.2020.08.004  0.326
2019 Armache JP, Cheng Y. Single-particle cryo-EM: beyond the resolution. National Science Review. 6: 864-866. PMID 31867130 DOI: 10.1093/Nsr/Nwz127  0.685
2019 Wang F, Yu Z, Betegon M, Campbell MG, Aksel T, Zhao J, Li S, Douglas SM, Cheng Y, Agard DA. Amino and PEG-Amino Graphene Oxide Grids Enrich and Protect Samples for High-resolution Single Particle Cryo-electron Microscopy. Journal of Structural Biology. 107437. PMID 31866389 DOI: 10.1016/J.Jsb.2019.107437  0.757
2019 Rosen LE, Klebba JE, Asfaha JB, Ghent CM, Campbell MG, Cheng Y, Morgan DO. Cohesin cleavage by separase is enhanced by a substrate motif distinct from the cleavage site. Nature Communications. 10: 5189. PMID 31729382 DOI: 10.1038/S41467-019-13209-Y  0.698
2019 Morris KL, Jones JR, Halebian M, Wu S, Baker M, Armache JP, Avila Ibarra A, Sessions RB, Cameron AD, Cheng Y, Smith CJ. Cryo-EM of multiple cage architectures reveals a universal mode of clathrin self-assembly. Nature Structural & Molecular Biology. 26: 890-898. PMID 31582853 DOI: 10.1038/S41594-019-0292-0  0.793
2019 Carragher B, Cheng Y, Frost A, Glaeser RM, Lander GC, Nogales E, Wang HW. Current outcomes when optimizing "standard" sample preparation for single-particle cryo-em. Journal of Microscopy. PMID 31553060 DOI: 10.1111/Jmi.12834  0.541
2019 Diver MM, Cheng Y, Julius D. Structural insights into TRPM8 inhibition and desensitization. Science (New York, N.Y.). PMID 31488702 DOI: 10.1126/Science.Aax6672  0.345
2019 Autzen HE, Julius D, Cheng Y. Membrane mimetic systems in CryoEM: keeping membrane proteins in their native environment. Current Opinion in Structural Biology. PMID 31279500 DOI: 10.1016/J.Sbi.2019.05.022  0.375
2019 Armache JP, Gamarra N, Johnson SL, Leonard JD, Wu S, Narlikar GJ, Cheng Y. Cryo-EM structures of remodeler-nucleosome intermediates suggest allosteric control through the nucleosome. Elife. 8. PMID 31210637 DOI: 10.7554/eLife.46057  0.696
2019 Armache JP, Gamarra N, Johnson SL, Leonard JD, Wu S, Narlikar GJ, Cheng Y. Author response: Cryo-EM structures of remodeler-nucleosome intermediates suggest allosteric control through the nucleosome Elife. DOI: 10.7554/Elife.46057.046  0.686
2019 Campbell MG, Cormier A, Ito S, Wu S, Lou J, Marks J, Baron JL, Nishimura SL, Cheng Y. Structural Studies αvβ8 Integrin by Single Particle Cryo-EM Microscopy and Microanalysis. 25: 1312-1313. DOI: 10.1017/S1431927619007293  0.718
2018 Stoddard CI, Feng S, Campbell MG, Liu W, Wang H, Zhong X, Bernatavichute Y, Cheng Y, Jacobsen SE, Narlikar GJ. A Nucleosome Bridging Mechanism for Activation of a Maintenance DNA Methyltransferase. Molecular Cell. PMID 30415948 DOI: 10.1016/J.Molcel.2018.10.006  0.688
2018 Zhang Y, Bulkley DP, Xin Y, Roberts KJ, Asarnow DE, Sharma A, Myers BR, Cho W, Cheng Y, Beachy PA. Structural Basis for Cholesterol Transport-like Activity of the Hedgehog Receptor Patched. Cell. PMID 30415841 DOI: 10.1016/J.Cell.2018.10.026  0.327
2018 Takasaka N, Seed RI, Cormier A, Bondesson AJ, Lou J, Elattma A, Ito S, Yanagisawa H, Hashimoto M, Ma R, Levine MD, Publicover J, Potts R, Jespersen JM, Campbell MG, ... ... Cheng Y, et al. Integrin αvβ8-expressing tumor cells evade host immunity by regulating TGF-β activation in immune cells. Jci Insight. 3. PMID 30333313 DOI: 10.1172/Jci.Insight.122591  0.663
2018 Cheng Y. Membrane protein structural biology in the era of single particle cryo-EM. Current Opinion in Structural Biology. 52: 58-63. PMID 30219656 DOI: 10.1016/J.Sbi.2018.08.008  0.391
2018 Kintzer AF, Green EM, Dominik PK, Bridges M, Armache JP, Deneka D, Kim SS, Hubbell W, Kossiakoff AA, Cheng Y, Stroud RM. Structural basis for activation of voltage sensor domains in an ion channel TPC1. Proceedings of the National Academy of Sciences of the United States of America. PMID 30190435 DOI: 10.1073/pnas.1805651115  0.686
2018 Cheng Y. Single-particle cryo-EM-How did it get here and where will it go. Science (New York, N.Y.). 361: 876-880. PMID 30166484 DOI: 10.1126/Science.Aat4346  0.341
2018 Heymann JB, Marabini R, Kazemi M, Sorzano COS, Holmdahl M, Mendez JH, Stagg SM, Jonic S, Palovcak E, Armache JP, Zhao J, Cheng Y, Pintilie G, Chiu W, Patwardhan A, et al. The First Single Particle Analysis Map Challenge: A Summary of the Assessments. Journal of Structural Biology. PMID 30114512 DOI: 10.1016/J.Jsb.2018.08.010  0.753
2018 Nguyen NX, Armache JP, Lee C, Yang Y, Zeng W, Mootha VK, Cheng Y, Bai XC, Jiang Y. Author Correction: Cryo-EM structure of a fungal mitochondrial calcium uniporter. Nature. PMID 30108362 DOI: 10.1038/S41586-018-0427-1  0.664
2018 Cormier A, Campbell MG, Ito S, Wu S, Lou J, Marks J, Baron JL, Nishimura SL, Cheng Y. Cryo-EM structure of the αvβ8 integrin reveals a mechanism for stabilizing integrin extension. Nature Structural & Molecular Biology. PMID 30061598 DOI: 10.1038/S41594-018-0093-X  0.728
2018 Nguyen NX, Armache JP, Lee C, Yang Y, Zeng W, Mootha VK, Cheng Y, Bai XC, Jiang Y. Cryo-EM structure of a fungal mitochondrial calcium uniporter. Nature. PMID 29995855 DOI: 10.1038/S41586-018-0333-6  0.707
2018 Binning JM, Smith AM, Hultquist JF, Craik CS, Caretta N, Campbell MG, Burton L, La Greca F, McGregor MJ, Ta HM, Bartholomeeusen K, Peterlin BM, Krogan NJ, Sevillano N, Cheng Y, et al. Fab-based inhibitors reveal ubiquitin independent functions for HIV Vif neutralization of APOBEC3 restriction factors. Plos Pathogens. 14: e1006830. PMID 29304101 DOI: 10.1371/Journal.Ppat.1006830  0.704
2018 Cormier A, Campbell MG, Ito S, Wu S, Lou J, Marks J, Baron JL, Nishimura SL, Cheng Y. Cryo-EM structure of the alpha v beta 8 integrin reveals a mechanism for stabilizing integrin extension. Nature Structural & Molecular Biology. 25: 698-704. DOI: 10.2210/Pdb6Djp/Pdb  0.68
2017 Dang S, Feng S, Tien J, Peters CJ, Bulkley D, Lolicato M, Zhao J, Zuberbühler K, Ye W, Qi L, Chen T, Craik CS, Nung Jan Y, Minor DL, Cheng Y, et al. Cryo-EM structures of the TMEM16A calcium-activated chloride channel. Nature. PMID 29236684 DOI: 10.1038/Nature25024  0.618
2017 Autzen HE, Myasnikov AG, Campbell MG, Asarnow D, Julius D, Cheng Y. Structure of the human TRPM4 ion channel in a lipid nanodisc. Science (New York, N.Y.). PMID 29217581 DOI: 10.1126/Science.Aar4510  0.717
2017 Cheng Y, Glaeser RM, Nogales E. How Cryo-EM Became so Hot. Cell. 171: 1229-1231. PMID 29195065 DOI: 10.1016/J.Cell.2017.11.016  0.323
2017 Jin P, Bulkley D, Guo Y, Zhang W, Guo Z, Huynh W, Wu S, Meltzer S, Cheng T, Jan LY, Jan YN, Cheng Y. Electron cryo-microscopy structure of the mechanotransduction channel NOMPC. Nature. PMID 28658211 DOI: 10.1038/Nature22981  0.31
2017 Zhou CY, Stoddard CI, Johnston JB, Trnka MJ, Echeverria I, Palovcak E, Sali A, Burlingame AL, Cheng Y, Narlikar GJ. Regulation of Rvb1/Rvb2 by a Domain within the INO80 Chromatin Remodeling Complex Implicates the Yeast Rvbs as Protein Assembly Chaperones. Cell Reports. 19: 2033-2044. PMID 28591576 DOI: 10.1016/J.Celrep.2017.05.029  0.363
2017 Zheng SQ, Palovcak E, Armache JP, Verba KA, Cheng Y, Agard DA. MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy. Nature Methods. PMID 28250466 DOI: 10.1038/Nmeth.4193  0.658
2017 Asarnow D, Gao Y, Palovcak E, Cheng Y. Feasibility of Cryo-EM for Structural Characterization of Small Membrane Proteins Biophysical Journal. 112. DOI: 10.1016/J.Bpj.2016.11.3108  0.421
2016 Wang RY, Song Y, Barad BA, Cheng Y, Fraser JS, DiMaio F. Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta. Elife. 5. PMID 27669148 DOI: 10.7554/Elife.17219  0.336
2016 Gao Y, Cao E, Julius D, Cheng Y. TRPV1 structures in nanodiscs reveal mechanisms of ligand and lipid action. Nature. PMID 27281200 DOI: 10.1038/Nature17964  0.357
2016 Frauenfeld J, Löving R, Armache JP, Sonnen AF, Guettou F, Moberg P, Zhu L, Jegerschöld C, Flayhan A, Briggs JA, Garoff H, Löw C, Cheng Y, Nordlund P. A saposin-lipoprotein nanoparticle system for membrane proteins. Nature Methods. PMID 26950744 DOI: 10.1038/Nmeth.3801  0.703
2016 Wang RY, Song Y, Barad BA, Cheng Y, Fraser JS, DiMaio F. Author response: Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta Elife. DOI: 10.7554/Elife.17219.029  0.315
2016 Gao Y, Cao E, Julius D, Cheng Y. High-Resolution Cryo-EM Structures of TRPV1 Reveal Structural Basis of Ligand Binding and Channel Gating Biophysical Journal. 110: 10a. DOI: 10.1016/J.Bpj.2015.11.111  0.352
2015 Cheng Y, Walz T. The Special Issue of Microscopy on single-particle cryo-electron microscopy. Microscopy (Oxford, England). PMID 26586604 DOI: 10.1093/Jmicro/Dfv359  0.547
2015 Wu S, Armache JP, Cheng Y. Single-particle cryo-EM data acquisition by using direct electron detection camera. Microscopy (Oxford, England). PMID 26546989 DOI: 10.1093/Jmicro/Dfv355  0.691
2015 Goedert M, Cheng Y. Parkinson's disease: Crystals of a toxic core. Nature. 525: 458-9. PMID 26352470 DOI: 10.1038/Nature15630  0.354
2015 Du J, Lü W, Wu S, Cheng Y, Gouaux E. Glycine receptor mechanism elucidated by electron cryo-microscopy. Nature. PMID 26344198 DOI: 10.1038/Nature14853  0.343
2015 Chiu PL, Li X, Li Z, Beckett B, Brilot AF, Grigorieff N, Agard DA, Cheng Y, Walz T. Evaluation of super-resolution performance of the K2 electron-counting camera using 2D crystals of aquaporin-0. Journal of Structural Biology. PMID 26318383 DOI: 10.1016/J.Jsb.2015.08.015  0.743
2015 Barad BA, Echols N, Wang RY, Cheng Y, DiMaio F, Adams PD, Fraser JS. EMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy. Nature Methods. 12: 943-6. PMID 26280328 DOI: 10.1038/Nmeth.3541  0.302
2015 Paulsen CE, Armache JP, Gao Y, Cheng Y, Julius D. Structure of the TRPA1 ion channel suggests regulatory mechanisms. Nature. 525: 552. PMID 26200340 DOI: 10.1038/Nature14871  0.66
2015 Cheng Y. Single-Particle Cryo-EM at Crystallographic Resolution. Cell. 161: 450-7. PMID 25910205 DOI: 10.1016/J.Cell.2015.03.049  0.371
2015 Cheng Y, Grigorieff N, Penczek PA, Walz T. A primer to single-particle cryo-electron microscopy. Cell. 161: 438-49. PMID 25910204 DOI: 10.1016/J.Cell.2015.03.050  0.596
2015 Rosenberg OS, Dovala D, Li X, Connolly L, Bendebury A, Finer-Moore J, Holton J, Cheng Y, Stroud RM, Cox JS. Substrates Control Multimerization and Activation of the Multi-Domain ATPase Motor of Type VII Secretion. Cell. 161: 501-12. PMID 25865481 DOI: 10.1016/J.Cell.2015.03.040  0.318
2015 Paulsen CE, Armache JP, Gao Y, Cheng Y, Julius D. Structure of the TRPA1 ion channel suggests regulatory mechanisms. Nature. 520: 511-7. PMID 25855297 DOI: 10.1038/Nature14367  0.714
2015 DiMaio F, Song Y, Li X, Brunner MJ, Xu C, Conticello V, Egelman E, Marlovits TC, Cheng Y, Baker D. Atomic-accuracy models from 4.5-Å cryo-electron microscopy data with density-guided iterative local refinement. Nature Methods. 12: 361-5. PMID 25707030 DOI: 10.1038/Nmeth.3286  0.303
2015 Wang RY, Kudryashev M, Li X, Egelman EH, Basler M, Cheng Y, Baker D, DiMaio F. De novo protein structure determination from near-atomic-resolution cryo-EM maps. Nature Methods. 12: 335-8. PMID 25707029 DOI: 10.1038/Nmeth.3287  0.324
2015 Zhao M, Wu S, Zhou Q, Vivona S, Cipriano DJ, Cheng Y, Brunger AT. Mechanistic insights into the recycling machine of the SNARE complex. Nature. 518: 61-7. PMID 25581794 DOI: 10.1038/Nature14148  0.402
2015 Shen PS, Park J, Qin Y, Li X, Parsawar K, Larson MH, Cox J, Cheng Y, Lambowitz AM, Weissman JS, Brandman O, Frost A. Protein synthesis. Rqc2p and 60S ribosomal subunits mediate mRNA-independent elongation of nascent chains. Science (New York, N.Y.). 347: 75-8. PMID 25554787 DOI: 10.1126/Science.1259724  0.341
2015 Kim JM, Wu S, Tomasiak TM, Mergel C, Winter MB, Stiller SB, Robles-Colmanares Y, Stroud RM, Tampé R, Craik CS, Cheng Y. Subnanometre-resolution electron cryomicroscopy structure of a heterodimeric ABC exporter Nature. 517: 396-400. PMID 25363761 DOI: 10.1038/Nature13872  0.34
2015 Cheng Y. Single Particle CryoEM of Integral Membrane Proteins Biophysical Journal. 108. DOI: 10.1016/J.Bpj.2014.11.2729  0.426
2014 Booth DS, Cheng Y, Frankel AD. The export receptor Crm1 forms a dimer to promote nuclear export of HIV RNA. Elife. 3: e04121. PMID 25486595 DOI: 10.7554/Elife.04121  0.734
2014 Bhabha G, Cheng HC, Zhang N, Moeller A, Liao M, Speir JA, Cheng Y, Vale RD. Allosteric communication in the dynein motor domain. Cell. 159: 857-68. PMID 25417161 DOI: 10.1016/J.Cell.2014.10.018  0.67
2014 Lu J, Yu Y, Zhu I, Cheng Y, Sun PD. Structural mechanism of serum amyloid A-mediated inflammatory amyloidosis. Proceedings of the National Academy of Sciences of the United States of America. 111: 5189-94. PMID 24706838 DOI: 10.1073/Pnas.1322357111  0.34
2014 Liao M, Cao E, Julius D, Cheng Y. Single particle electron cryo-microscopy of a mammalian ion channel. Current Opinion in Structural Biology. 27: 1-7. PMID 24681231 DOI: 10.1016/J.Sbi.2014.02.005  0.712
2014 Booth DS, Cheng Y, Frankel AD. Author response: The export receptor Crm1 forms a dimer to promote nuclear export of HIV RNA Elife. DOI: 10.7554/Elife.04121.016  0.698
2014 Leonard JD, Armache J, Naber N, Wu S, Pate E, Cooke R, Cheng Y, Narlikar GJ. The Mechanism of Nucleosome Spacing by a Dimeric Chromatin Remodeling Enzyme Biophysical Journal. 106: 69a-70a. DOI: 10.1016/J.Bpj.2013.11.461  0.69
2014 He Y, Wu S, Booth D, Agarrd D, Cheng Y, Guthrie C. Structural Studies of the Yeast Prp8-Snu114 Complex Biophysical Journal. 106: 47a. DOI: 10.1016/J.Bpj.2013.11.338  0.662
2014 Agard D, Cheng Y, Glaeser RM, Subramaniam S. Single-particle cryo-electron microscopy (cryo-EM): Progress, challenges, and perspectives for further improvement Advances in Imaging and Electron Physics. 185: 113-137. DOI: 10.1016/B978-0-12-800144-8.00002-1  0.362
2013 Cao E, Liao M, Cheng Y, Julius D. TRPV1 structures in distinct conformations reveal activation mechanisms. Nature. 504: 113-8. PMID 24305161 DOI: 10.1038/Nature12823  0.666
2013 Liao M, Cao E, Julius D, Cheng Y. Structure of the TRPV1 ion channel determined by electron cryo-microscopy. Nature. 504: 107-12. PMID 24305160 DOI: 10.1038/Nature12822  0.69
2013 Asensio CS, Sirkis DW, Maas JW, Egami K, To TL, Brodsky FM, Shu X, Cheng Y, Edwards RH. Self-assembly of VPS41 promotes sorting required for biogenesis of the regulated secretory pathway. Developmental Cell. 27: 425-37. PMID 24210660 DOI: 10.1016/J.Devcel.2013.10.007  0.309
2013 Li X, Zheng SQ, Egami K, Agard DA, Cheng Y. Influence of electron dose rate on electron counting images recorded with the K2 camera. Journal of Structural Biology. 184: 251-60. PMID 23968652 DOI: 10.1016/J.Jsb.2013.08.005  0.305
2013 Li X, Mooney P, Zheng S, Booth CR, Braunfeld MB, Gubbens S, Agard DA, Cheng Y. Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM. Nature Methods. 10: 584-90. PMID 23644547 DOI: 10.1038/Nmeth.2472  0.379
2013 Park S, Li X, Kim HM, Singh CR, Tian G, Hoyt MA, Lovell S, Battaile KP, Zolkiewski M, Coffino P, Roelofs J, Cheng Y, Finley D. Reconfiguration of the proteasome during chaperone-mediated assembly. Nature. 497: 512-6. PMID 23644457 DOI: 10.1038/Nature12123  0.315
2013 Canzio D, Liao M, Naber N, Pate E, Larson A, Wu S, Marina DB, Garcia JF, Madhani HD, Cooke R, Schuck P, Cheng Y, Narlikar GJ. A conformational switch in HP1 releases auto-inhibition to drive heterochromatin assembly. Nature. 496: 377-81. PMID 23485968 DOI: 10.1038/Nature12032  0.672
2013 Avila-Sakar A, Li X, Zheng SQ, Cheng Y. Recording high-resolution images of two-dimensional crystals of membrane proteins. Methods in Molecular Biology (Clifton, N.J.). 955: 129-52. PMID 23132059 DOI: 10.1007/978-1-62703-176-9_8  0.316
2013 Canzio D, Liang M, Naber N, Larson A, Marina D, Garcia J, Madhani H, Cooke R, Schuck P, Cheng Y, Narlikar GJ. Abstract IA23: Functional and structural studies of HP1 heterochromatin Cancer Research. 73. DOI: 10.1158/1538-7445.Cec13-Ia23  0.335
2012 Schneidman-Duhovny D, Rossi A, Avila-Sakar A, Kim SJ, Velázquez-Muriel J, Strop P, Liang H, Krukenberg KA, Liao M, Kim HM, Sobhanifar S, Dötsch V, Rajpal A, Pons J, Agard DA, ... Cheng Y, et al. A method for integrative structure determination of protein-protein complexes. Bioinformatics (Oxford, England). 28: 3282-9. PMID 23093611 DOI: 10.1093/Bioinformatics/Bts628  0.709
2012 Martinez-Avila O, Wu S, Kim SJ, Cheng Y, Khan F, Samudrala R, Sali A, Horst JA, Habelitz S. Self-assembly of filamentous amelogenin requires calcium and phosphate: from dimers via nanoribbons to fibrils. Biomacromolecules. 13: 3494-502. PMID 22974364 DOI: 10.1021/Bm300942C  0.302
2012 Wu S, Avila-Sakar A, Kim J, Booth DS, Greenberg CH, Rossi A, Liao M, Li X, Alian A, Griner SL, Juge N, Yu Y, Mergel CM, Chaparro-Riggers J, Strop P, ... ... Cheng Y, et al. Fabs enable single particle cryoEM studies of small proteins. Structure (London, England : 1993). 20: 582-92. PMID 22483106 DOI: 10.1016/J.Str.2012.02.017  0.779
2011 Martinez-Avila OM, Wu S, Cheng Y, Lee R, Khan F, Habelitz S. Self-assembly of amelogenin proteins at the water-oil interface. European Journal of Oral Sciences. 119: 75-82. PMID 22243231 DOI: 10.1111/J.1600-0722.2011.00907.X  0.309
2011 Booth DS, Avila-Sakar A, Cheng Y. Visualizing proteins and macromolecular complexes by negative stain EM: from grid preparation to image acquisition. Journal of Visualized Experiments : Jove. PMID 22215030 DOI: 10.3791/3227  0.657
2011 He X, Wu S, Martinez-Avila O, Cheng Y, Habelitz S. Self-aligning amelogenin nanoribbons in oil-water system. Journal of Structural Biology. 174: 203-12. PMID 21134461 DOI: 10.1016/J.Jsb.2010.11.027  0.347
2011 Kim HM, Yu Y, Cheng Y. Structure characterization of the 26S proteasome. Biochimica Et Biophysica Acta. 1809: 67-79. PMID 20800708 DOI: 10.1016/J.Bbagrm.2010.08.008  0.375
2010 Hite RK, Schenk AD, Li Z, Cheng Y, Walz T. Collecting electron crystallographic data of two-dimensional protein crystals. Methods in Enzymology. 481: 251-82. PMID 20887861 DOI: 10.1016/S0076-6879(10)81011-0  0.738
2010 Daugherty MD, Booth DS, Jayaraman B, Cheng Y, Frankel AD. HIV Rev response element (RRE) directs assembly of the Rev homooligomer into discrete asymmetric complexes. Proceedings of the National Academy of Sciences of the United States of America. 107: 12481-6. PMID 20616058 DOI: 10.1073/Pnas.1007022107  0.736
2010 Li X, Grigorieff N, Cheng Y. GPU-enabled FREALIGN: accelerating single particle 3D reconstruction and refinement in Fourier space on graphics processors. Journal of Structural Biology. 172: 407-12. PMID 20558298 DOI: 10.1016/J.Jsb.2010.06.010  0.338
2010 Yu Y, Smith DM, Kim HM, Rodriguez V, Goldberg AL, Cheng Y. Interactions of PAN's C-termini with archaeal 20S proteasome and implications for the eukaryotic proteasome-ATPase interactions. The Embo Journal. 29: 692-702. PMID 20019667 DOI: 10.1038/Emboj.2009.382  0.377
2010 Lenassi M, Cagney G, Liao M, Vaupotic T, Bartholomeeusen K, Cheng Y, Krogan NJ, Plemenitas A, Peterlin BM. HIV Nef is secreted in exosomes and triggers apoptosis in bystander CD4+ T cells. Traffic (Copenhagen, Denmark). 11: 110-22. PMID 19912576 DOI: 10.1111/J.1600-0854.2009.01006.X  0.638
2010 Li Z, Hite RK, Cheng Y, Walz T. Evaluation of imaging plates as recording medium for images of negatively stained single particles and electron diffraction patterns of two-dimensional crystals. Journal of Electron Microscopy. 59: 53-63. PMID 19643814 DOI: 10.1093/Jmicro/Dfp036  0.73
2010 Racki LR, Narlikar GJ, Cooke R, Naber N, Purcell TJ, Yang JG, Cheng Y, Acevedo A, Partensky P. The Chromatin-Remodeling Complex ACF Functions as a Dimeric Motor to Space Nucleosomes Biophysical Journal. 98: 476a. DOI: 10.1016/J.Bpj.2009.12.2595  0.349
2009 Racki LR, Yang JG, Naber N, Partensky PD, Acevedo A, Purcell TJ, Cooke R, Cheng Y, Narlikar GJ. The chromatin remodeller ACF acts as a dimeric motor to space nucleosomes. Nature. 462: 1016-21. PMID 20033039 DOI: 10.1038/Nature08621  0.322
2009 Cheng Y, Walz T. The advent of near-atomic resolution in single-particle electron microscopy. Annual Review of Biochemistry. 78: 723-42. PMID 19489732 DOI: 10.1146/Annurev.Biochem.78.070507.140543  0.579
2009 Cheng Y. Toward an atomic model of the 26S proteasome Current Opinion in Structural Biology. 19: 203-208. PMID 19286367 DOI: 10.1016/J.Sbi.2009.02.004  0.385
2008 Rabl J, Smith DM, Yu Y, Chang SC, Goldberg AL, Cheng Y. Mechanism of gate opening in the 20S proteasome by the proteasomal ATPases. Molecular Cell. 30: 360-8. PMID 18471981 DOI: 10.1016/J.Molcel.2008.03.004  0.359
2008 Ballister ER, Lai AH, Zuckermann RN, Cheng Y, Mougous JD. In vitro self-assembly of tailorable nanotubes from a simple protein building block. Proceedings of the National Academy of Sciences of the United States of America. 105: 3733-8. PMID 18310321 DOI: 10.1073/Pnas.0712247105  0.312
2008 Gonen T, Hite RK, Cheng Y, Petre BM, Kistler J, Walz T. Polymorphic assemblies and crystalline arrays of lens tetraspanin MP20. Journal of Molecular Biology. 376: 380-92. PMID 18166196 DOI: 10.1016/J.Jmb.2007.09.001  0.788
2007 Ohi MD, Feoktistova A, Ren L, Yip C, Cheng Y, Chen JS, Yoon HJ, Wall JS, Huang Z, Penczek PA, Gould KL, Walz T. Structural organization of the anaphase-promoting complex bound to the mitotic activator Slp1. Molecular Cell. 28: 871-85. PMID 18082611 DOI: 10.1016/J.Molcel.2007.10.003  0.674
2007 Smith DM, Chang SC, Park S, Finley D, Cheng Y, Goldberg AL. Docking of the proteasomal ATPases' carboxyl termini in the 20S proteasome's alpha ring opens the gate for substrate entry. Molecular Cell. 27: 731-44. PMID 17803938 DOI: 10.1016/J.Molcel.2007.06.033  0.306
2007 Cheng Y, Walz T. Reconstructing the endocytotic machinery. Methods in Cell Biology. 79: 463-87. PMID 17327169 DOI: 10.1016/S0091-679X(06)79018-5  0.604
2007 Cheng Y, Boll W, Kirchhausen T, Harrison SC, Walz T. Cryo-electron tomography of clathrin-coated vesicles: structural implications for coat assembly. Journal of Molecular Biology. 365: 892-9. PMID 17095010 DOI: 10.1016/J.Jmb.2006.10.036  0.525
2007 Cheng Y, Boll W, Kirchhausen T, Harrison S, Walz T. Visualization of Clathrin-coated Vesicles by Cryo-electron Tomography Microscopy and Microanalysis. 13. DOI: 10.1017/S143192760707198X  0.495
2006 Nishida N, Xie C, Shimaoka M, Cheng Y, Walz T, Springer TA. Activation of leukocyte beta2 integrins by conversion from bent to extended conformations. Immunity. 25: 583-94. PMID 17045822 DOI: 10.1016/J.Immuni.2006.07.016  0.492
2006 Fotin A, Kirchhausen T, Grigorieff N, Harrison SC, Walz T, Cheng Y. Structure determination of clathrin coats to subnanometer resolution by single particle cryo-electron microscopy. Journal of Structural Biology. 156: 453-60. PMID 16908193 DOI: 10.1016/J.Jsb.2006.07.001  0.593
2006 Nakagawa T, Cheng Y, Sheng M, Walz T. Three-dimensional structure of an AMPA receptor without associated stargazin/TARP proteins. Biological Chemistry. 387: 179-87. PMID 16497150 DOI: 10.1515/Bc.2006.024  0.542
2006 Cheng Y, Wolf E, Larvie M, Zak O, Aisen P, Grigorieff N, Harrison SC, Walz T. Single particle reconstructions of the transferrin-transferrin receptor complex obtained with different specimen preparation techniques. Journal of Molecular Biology. 355: 1048-65. PMID 16343539 DOI: 10.1016/J.Jmb.2005.11.021  0.572
2006 Gonen T, Cheng Y, Hiroaki Y, Fujiyoshi Y, Harrison S, Walz T. PL-6 Structure of the aquaporin-0 mediated membrane junction(Plenary Lecture,Abstract,Meeting Program of EABS & BSJ 2006) Seibutsu Butsuri. 46: S104. DOI: 10.2142/Biophys.46.S104_2  0.638
2006 Gonen T, Cheng Y, Sliz P, Hiroaki Y, Fujiyoshi Y, Harrison SC, Walz T. Erratum: Corrigendum: Lipid–protein interactions in double-layered two-dimensional AQP0 crystals Nature. 441: 248-248. DOI: 10.1038/Nature04775  0.658
2005 Cheng Y, Zak O, Aisen P, Harrison SC, Walz T. Single particle reconstruction of the human apo-transferrin-transferrin receptor complex. Journal of Structural Biology. 152: 204-10. PMID 16343946 DOI: 10.1016/J.Jsb.2005.10.006  0.545
2005 Smith DM, Kafri G, Cheng Y, Ng D, Walz T, Goldberg AL. ATP binding to PAN or the 26S ATPases causes association with the 20S proteasome, gate opening, and translocation of unfolded proteins. Molecular Cell. 20: 687-98. PMID 16337593 DOI: 10.1016/J.Molcel.2005.10.019  0.567
2005 Gonen T, Cheng Y, Sliz P, Hiroaki Y, Fujiyoshi Y, Harrison SC, Walz T. Lipid-protein interactions in double-layered two-dimensional AQP0 crystals. Nature. 438: 633-8. PMID 16319884 DOI: 10.1038/Nature04321  0.677
2005 Nakagawa T, Cheng Y, Ramm E, Sheng M, Walz T. Structure and different conformational states of native AMPA receptor complexes. Nature. 433: 545-9. PMID 15690046 DOI: 10.1038/Nature03328  0.567
2004 Fotin A, Cheng Y, Grigorieff N, Walz T, Harrison SC, Kirchhausen T. Structure of an auxilin-bound clathrin coat and its implications for the mechanism of uncoating. Nature. 432: 649-53. PMID 15502813 DOI: 10.1038/Nature03078  0.557
2004 Fotin A, Cheng Y, Sliz P, Grigorieff N, Harrison SC, Kirchhausen T, Walz T. Molecular model for a complete clathrin lattice from electron cryomicroscopy. Nature. 432: 573-9. PMID 15502812 DOI: 10.1038/Nature03079  0.57
2004 Gonen T, Cheng Y, Kistler J, Walz T. Aquaporin-0 membrane junctions form upon proteolytic cleavage. Journal of Molecular Biology. 342: 1337-45. PMID 15351655 DOI: 10.1016/J.Jmb.2004.07.076  0.665
2004 Gonen T, Sliz P, Kistler J, Cheng Y, Walz T. Aquaporin-0 membrane junctions reveal the structure of a closed water pore. Nature. 429: 193-7. PMID 15141214 DOI: 10.1038/Nature02503  0.668
2004 Ohi M, Li Y, Cheng Y, Walz T. Negative Staining and Image Classification - Powerful Tools in Modern Electron Microscopy. Biological Procedures Online. 6: 23-34. PMID 15103397 DOI: 10.1251/Bpo70  0.522
2004 Chen B, Cheng Y, Calder L, Harrison SC, Reinherz EL, Skehel JJ, Wiley DC. A chimeric protein of simian immunodeficiency virus envelope glycoprotein gp140 and Escherichia coli aspartate transcarbamoylase. Journal of Virology. 78: 4508-16. PMID 15078931 DOI: 10.1128/Jvi.78.9.4508-4516.2004  0.322
2004 Cheng Y, Zak O, Aisen P, Harrison SC, Walz T. Structure of the human transferrin receptor-transferrin complex. Cell. 116: 565-76. PMID 14980223 DOI: 10.1016/S0092-8674(04)00130-8  0.537
2004 Ohi M, Li Y, Cheng Y, Walz T. Negative staining and image classification - Powerful tools in modern electron microscopy Biological Procedures Online. 6: 23-34. DOI: 10.1251/bpo70  0.447
2001 Lederkremer GZ, Cheng Y, Petre BM, Vogan E, Springer S, Schekman R, Walz T, Kirchhausen T. Structure of the Sec23p/24p and Sec13p/31p complexes of COPII. Proceedings of the National Academy of Sciences of the United States of America. 98: 10704-9. PMID 11535824 DOI: 10.1073/Pnas.191359398  0.552
2000 Schmidt-Krey I, Mitsuoka K, Hirai T, Murata K, Cheng Y, Fujiyoshi Y, Morgenstern R, Hebert H. The three-dimensional map of microsomal glutathione transferase 1 at 6 A resolution. The Embo Journal. 19: 6311-6. PMID 11101503 DOI: 10.1093/Emboj/19.23.6311  0.335
1999 Schmidt-Krey I, Murata K, Hirai T, Mitsuoka K, Cheng Y, Morgenstern R, Fujiyoshi Y, Hebert H. The projection structure of the membrane protein microsomal glutathione transferase at 3 A resolution as determined from two-dimensional hexagonal crystals. Journal of Molecular Biology. 288: 243-53. PMID 10329140 DOI: 10.1006/Jmbi.1999.2683  0.329
Low-probability matches (unlikely to be authored by this person)
2018 Jin P, Bulkley D, Guo Y, Zhang W, Guo Z, Huynh W, Wu S, Meltzer S, Cheng T, Yeh Jan L, Jan Y, Cheng Y. Cryo-EM structure of the Mechanotransduction Channel NOMPC Biophysical Journal. 114: 22a. DOI: 10.1016/J.Bpj.2017.11.164  0.299
2019 Feng S, Dang S, Han TW, Ye W, Jin P, Cheng T, Li J, Jan YN, Jan LY, Cheng Y. Cryo-EM Studies of TMEM16F Calcium-Activated Ion Channel Suggest Features Important for Lipid Scrambling. Cell Reports. 28: 1385. PMID 31365878 DOI: 10.2210/Pdb6P48/Pdb  0.299
2018 Palovcak E, Wang F, Zheng SQ, Yu Z, Li S, Betegon M, Bulkley D, Agard DA, Cheng Y. A simple and robust procedure for preparing graphene-oxide cryo-EM grids. Journal of Structural Biology. PMID 30017701 DOI: 10.1016/J.Jsb.2018.07.007  0.296
2003 Toth EA, Li Y, Sawaya MR, Cheng Y, Ellenberger T. The crystal structure of the bifunctional primase-helicase of bacteriophage T7 Molecular Cell. 12: 1113-1123. PMID 14636571 DOI: 10.1016/S1097-2765(03)00442-8  0.296
2019 Basu K, Green EM, Cheng Y, Craik CS. Why recombinant antibodies - benefits and applications. Current Opinion in Biotechnology. 60: 153-158. PMID 30849700 DOI: 10.1016/J.Copbio.2019.01.012  0.294
2014 Wang Y, Schnitzbauer J, Hu Z, Li X, Cheng Y, Huang ZL, Huang B. Localization events-based sample drift correction for localization microscopy with redundant cross-correlation algorithm. Optics Express. 22: 15982-91. PMID 24977854 DOI: 10.1364/Oe.22.015982  0.291
2014 Penczek PA, Fang J, Li X, Cheng Y, Loerke J, Spahn CM. CTER-rapid estimation of CTF parameters with error assessment. Ultramicroscopy. 140: 9-19. PMID 24562077 DOI: 10.1016/J.Ultramic.2014.01.009  0.285
2017 Asarnow D, Palovcak E, Gao Y, Julius D, Cheng Y. Ion Channel in Lipid Nanodisc By Single Particle Cryo-EM - Pushing The Technology Limit Microscopy and Microanalysis. 23: 822-823. DOI: 10.1017/S1431927617004779  0.284
2017 Smith AAA, Autzen HE, Laursen T, Wu V, Yen M, Hall A, Hansen SD, Cheng Y, Xu T. Controlling Styrene Maleic acid lipid particles through RAFT. Biomacromolecules. PMID 28934548 DOI: 10.1021/Acs.Biomac.7B01136  0.284
2019 Myasnikov A, Zheng S, Bulkley D, Cheng Y, Agard D. Abstract OR-16: High Resolution Cryo-Electron Microscopy and New Direct Electron Detector from Gatan - K3 International Journal of Biomedicine. 9: S12-S12. DOI: 10.21103/Ijbm.9.Suppl_1.Or16  0.282
2018 Asarnow D, Cheng Y. Consistency Criterion for Particle Sorting in Single-Particle Cryo-EM Biophysical Journal. 114. DOI: 10.1016/J.Bpj.2017.11.2316  0.279
2018 Palovcak E, Bulkley D, Zheng S, Wang F, Agard D, Cheng Y. Graphene-Oxide Substrate for High-Resolution Single Particle Cryo-EM Biophysical Journal. 114: 11a. DOI: 10.1016/J.Bpj.2017.11.104  0.276
2020 Li F, Eriksen J, Finer-Moore J, Chang R, Nguyen P, Bowen A, Myasnikov A, Yu Z, Bulkley D, Cheng Y, Edwards RH, Stroud RM. Ion transport and regulation in a synaptic vesicle glutamate transporter. Science (New York, N.Y.). 368: 893-897. PMID 32439795 DOI: 10.1126/Science.Aba9202  0.272
1998 Cheng Y, Taylor KA. Characterization of the low magnification performance of a Philips CM300-FEG Ultramicroscopy. 74: 209-220. PMID 9809458 DOI: 10.1016/S0304-3991(98)00039-4  0.271
2013 Qian MX, Pang Y, Liu CH, Haratake K, Du BY, Ji DY, Wang GF, Zhu QQ, Song W, Yu Y, Zhang XX, Huang HT, Miao S, Chen LB, Zhang ZH, ... ... Cheng Y, et al. Acetylation-mediated proteasomal degradation of core histones during DNA repair and spermatogenesis. Cell. 153: 1012-24. PMID 23706739 DOI: 10.1016/J.Cell.2013.04.032  0.271
1997 Taylor KA, Tang J, Cheng Y, Winkler H. The use of electron tomography for structural analysis of disordered protein arrays. Journal of Structural Biology. 120: 372-86. PMID 9441940 DOI: 10.1006/Jsbi.1997.3932  0.269
2000 Hebert H, Schmidt-Krey I, Mitsuoka K, Hirai T, Murata K, Cheng Y, Fujiyoshi Y, Morgenstern R. Electron Crystallography of a Small Membrane-Bound Enzyme, Microsomal Glutathione Transferase Microscopy and Microanalysis. 6: 232-233. DOI: 10.1017/S1431927600033651  0.269
2022 Zhang K, Wu H, Hoppe N, Manglik A, Cheng Y. Fusion protein strategies for cryo-EM study of G protein-coupled receptors. Nature Communications. 13: 4366. PMID 35902590 DOI: 10.1038/s41467-022-32125-2  0.266
2011 Nakamura K, Nemani VM, Azarbal F, Skibinski G, Levy JM, Egami K, Munishkina L, Zhang J, Gardner B, Wakabayashi J, Sesaki H, Cheng Y, Finkbeiner S, Nussbaum RL, Masliah E, et al. Direct membrane association drives mitochondrial fission by the Parkinson disease-associated protein alpha-synuclein. The Journal of Biological Chemistry. 286: 20710-26. PMID 21489994 DOI: 10.1074/Jbc.M110.213538  0.265
1999 Hiroaki Y, Mitsuoka K, Cheng Y, Hiroaki H, Fujiyoshi Y. Influence of various nucleotides on the in situ crystallization of Ca2+-ATPase. Biochimica Et Biophysica Acta. 1415: 361-8. PMID 9889398 DOI: 10.1016/S0005-2736(98)00221-1  0.262
2015 Li X, Zheng S, Agard DA, Cheng Y. Asynchronous data acquisition and on-the-fly analysis of dose fractionated cryoEM images by UCSFImage. Journal of Structural Biology. PMID 26370395 DOI: 10.1016/J.Jsb.2015.09.003  0.262
2024 Chio US, Palovcak E, Smith AAA, Autzen H, Muñoz EN, Yu Z, Wang F, Agard DA, Armache JP, Narlikar GJ, Cheng Y. Functionalized graphene-oxide grids enable high-resolution cryo-EM structures of the SNF2h-nucleosome complex without crosslinking. Nature Communications. 15: 2225. PMID 38472177 DOI: 10.1038/s41467-024-46178-y  0.261
2020 Sun M, Azumaya C, Tse E, Southworth D, Verba K, Frost A, Cheng Y, Agard D. Practical Considerations of Using the K3 Camera in CDS Mode for High-resolution and High-throughput Single Particle Cryo-EM Microscopy and Microanalysis. 1-1. DOI: 10.1017/S1431927620017687  0.26
1988 Cheng Y, Wang R. Convergent-beam electron diffraction determination of the extinction distance of the quasicrystalline icosahedral phase Solid State Communications. 68: 795-797. DOI: 10.1016/0038-1098(88)90066-X  0.259
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2018 Green E, Sevillano N, Li N, Cheng Y, Craik C. Rapid Screening of FABS from Phage Display Libraries for Structural Studies Biophysical Journal. 114. DOI: 10.1016/J.Bpj.2017.11.908  0.255
2006 Liu J, Wu S, Reedy MC, Winkler H, Lucaveche C, Cheng Y, Reedy MK, Taylor KA. Electron tomography of swollen rigor fibers of insect flight muscle reveals a short and variably angled S2 domain. Journal of Molecular Biology. 362: 844-60. PMID 16949613 DOI: 10.1016/J.Jmb.2006.07.084  0.253
2012 Narlikar G, Leonard J, Racki L, Naber N, Cooke R, Cheng Y. Mechanisms of Chromatin Remodeling Motors Biophysical Journal. 102: 428a. DOI: 10.1016/J.Bpj.2011.11.2343  0.252
2021 Arnold WR, Asarnow D, Cheng Y. Classifying Liganded States in Heterogeneous Single-Particle Cryo-EM Datasets. Microscopy (Oxford, England). PMID 34718671 DOI: 10.1093/jmicro/dfab044  0.251
2020 Billesbølle CB, Azumaya CM, Kretsch RC, Powers AS, Gonen S, Schneider S, Arvedson T, Dror RO, Cheng Y, Manglik A. Structure of hepcidin-bound ferroportin reveals iron homeostatic mechanisms. Nature. PMID 32814342 DOI: 10.1038/S41586-020-2668-Z  0.248
2015 Abrishami V, Vargas J, Li X, Cheng Y, Marabini R, Sorzano CÓ, Carazo JM. Alignment of direct detection device micrographs using a robust Optical Flow approach. Journal of Structural Biology. 189: 163-76. PMID 25681631 DOI: 10.1016/J.Jsb.2015.02.001  0.248
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2020 Aksel T, Yu Z, Cheng Y, Douglas SM. Molecular goniometers for single-particle cryo-electron microscopy of DNA-binding proteins. Nature Biotechnology. PMID 33077960 DOI: 10.1038/s41587-020-0716-8  0.245
2009 Kim HZ, Jung K, Kim HM, Cheng Y, Koh GY. A designed angiopoietin-2 variant, pentameric COMP-Ang2, strongly activates Tie2 receptor and stimulates angiogenesis. Biochimica Et Biophysica Acta. 1793: 772-80. PMID 19339208 DOI: 10.1016/J.Bbamcr.2009.01.018  0.24
2019 Harel ET, Drake PM, Barfield RM, Lui I, Farr-Jones S, Van't Veer L, Gartner ZJ, Green EM, Lourenço AL, Cheng Y, Hann BC, Rabuka D, Craik CS. Antibody-Drug Conjugates Targeting the Urokinase Receptor (uPAR) as a Possible Treatment of Aggressive Breast Cancer. Antibodies (Basel, Switzerland). 8. PMID 31694242 DOI: 10.3390/Antib8040054  0.238
2018 Myasnikov A, Zheng S, Bulkley D, Cheng Y, Agard D. K3 - A First Look at The New Direct Electron Detection Camera from Gatan Company Microscopy and Microanalysis. 24: 890-891. DOI: 10.1017/S1431927618004944  0.234
2014 Minagawa S, Lou J, Seed RI, Cormier A, Wu S, Cheng Y, Murray L, Tsui P, Connor J, Herbst R, Govaerts C, Barker T, Cambier S, Yanagisawa H, Goodsell A, et al. Selective targeting of TGF-β activation to treat fibroinflammatory airway disease. Science Translational Medicine. 6: 241ra79. PMID 24944194 DOI: 10.1126/Scitranslmed.3008074  0.233
2023 Nieweglowska ES, Brilot AF, Méndez-Moran M, Kokontis C, Baek M, Li J, Cheng Y, Baker D, Bondy-Denomy J, Agard DA. The ϕPA3 phage nucleus is enclosed by a self-assembling 2D crystalline lattice. Nature Communications. 14: 927. PMID 36807264 DOI: 10.1038/s41467-023-36526-9  0.228
2020 Yu Y, Liu H, Yu Z, Witkowska HE, Cheng Y. Stoichiometry of Nucleotide Binding to Proteasome AAA+ ATPase Hexamer Established by Native Mass Spectrometry. Molecular & Cellular Proteomics : McP. 19: 1997-2015. PMID 33451634 DOI: 10.1074/mcp.RA120.002067  0.224
2023 Choi W, Wu H, Yserentant K, Huang B, Cheng Y. Efficient tagging of endogenous proteins in human cell lines for structural studies by single-particle cryo-EM. Proceedings of the National Academy of Sciences of the United States of America. 120: e2302471120. PMID 37487103 DOI: 10.1073/pnas.2302471120  0.217
2022 Zhang K, Julius D, Cheng Y. A step-by-step protocol for capturing conformational snapshots of ligand gated ion channels by single-particle cryo-EM. Star Protocols. 3: 101732. PMID 36181684 DOI: 10.1016/j.xpro.2022.101732  0.212
2022 Yu Z, Chen J, Takagi E, Wang F, Saha B, Liu X, Joubert LM, Gleason CE, Jin M, Li C, Nowotny C, Agard D, Cheng Y, Pearce D. Interactions between mTORC2 core subunits Rictor and mSin1 dictate selective and context-dependent phosphorylation of substrate kinases SGK1 and Akt. The Journal of Biological Chemistry. 102288. PMID 35926713 DOI: 10.1016/j.jbc.2022.102288  0.211
2021 Sevillano N, Green EM, Votteler J, Kim DY, Ren X, Yang B, Liu X, Lourenço AL, Hurley JH, Farr-Jones S, Gross JD, Cheng Y, Craik CS. Identification of recombinant Fabs for structural and functional characterization of HIV-host factor complexes. Plos One. 16: e0250318. PMID 33983947 DOI: 10.1371/journal.pone.0250318  0.207
2022 Carlson CR, Adly AN, Bi M, Howard CJ, Frost A, Cheng Y, Morgan DO. Reconstitution of the SARS-CoV-2 ribonucleosome provides insights into genomic RNA packaging and regulation by phosphorylation. The Journal of Biological Chemistry. 102560. PMID 36202211 DOI: 10.1016/j.jbc.2022.102560  0.202
2019 Dang S, van Goor MK, Asarnow D, Wang Y, Julius D, Cheng Y, van der Wijst J. Structural insight into TRPV5 channel function and modulation. Proceedings of the National Academy of Sciences of the United States of America. PMID 30975749 DOI: 10.1073/pnas.1820323116  0.202
2021 Wang Q, Asarnow DE, Ding K, Mann RK, Hatakeyama J, Zhang Y, Ma Y, Cheng Y, Beachy PA. Dispatched uses Na flux to power release of lipid-modified Hedgehog. Nature. PMID 34707294 DOI: 10.1038/s41586-021-03996-0  0.2
2023 Li YL, Langley CA, Azumaya CM, Echeverria I, Chesarino NM, Emerman M, Cheng Y, Gross JD. The structural basis for HIV-1 Vif antagonism of human APOBEC3G. Nature. PMID 36754086 DOI: 10.1038/s41586-023-05779-1  0.2
2024 Pourmal S, Green E, Bajaj R, Chemmama IE, Knudsen GM, Gupta M, Sali A, Cheng Y, Craik CS, Kroetz DL, Stroud RM. Structural basis of prostaglandin efflux by MRP4. Nature Structural & Molecular Biology. PMID 38216659 DOI: 10.1038/s41594-023-01176-4  0.194
2020 Wang F, Liu Y, Yu Z, Li S, Feng S, Cheng Y, Agard DA. General and robust covalently linked graphene oxide affinity grids for high-resolution cryo-EM. Proceedings of the National Academy of Sciences of the United States of America. PMID 32913054 DOI: 10.1073/Pnas.2009707117  0.188
2021 Zhang K, Julius D, Cheng Y. Structural snapshots of TRPV1 reveal mechanism of polymodal functionality. Cell. PMID 34496225 DOI: 10.1016/j.cell.2021.08.012  0.188
2022 Carlson CR, Adly AN, Bi M, Cheng Y, Morgan DO. Reconstitution of the SARS-CoV-2 ribonucleosome provides insights into genomic RNA packaging and regulation by phosphorylation. Biorxiv : the Preprint Server For Biology. PMID 35664996 DOI: 10.1101/2022.05.23.493138  0.186
2022 Coffino P, Cheng Y. Allostery Modulates Interactions between Proteasome Core Particles and Regulatory Particles. Biomolecules. 12. PMID 35740889 DOI: 10.3390/biom12060764  0.183
2021 Asarnow D, Wang B, Lee WH, Hu Y, Huang CW, Faust B, Ng PML, Ngoh EZX, Bohn M, Bulkley D, Pizzorno A, Ary B, Tan HC, Lee CY, Minhat RA, ... ... Cheng Y, et al. Structural insight into SARS-CoV-2 neutralizing antibodies and modulation of syncytia. Cell. PMID 33974910 DOI: 10.1016/j.cell.2021.04.033  0.18
2021 Sun M, Azumaya C, Tse E, Frost A, Southworth D, Verba KA, Cheng Y, Agard DA. Practical considerations for using K3 cameras in CDS mode for high-resolution and high-throughput single particle cryo-EM. Journal of Structural Biology. 107745. PMID 33984504 DOI: 10.1016/j.jsb.2021.107745  0.18
2020 Zhou X, Bracken C, Zhang K, Zhou J, Mou KY, Wang L, Cheng Y, Leung KKK, Wells JA. Targeting phosphotyrosine in native proteins with conditional, bi-specific antibody traps. Journal of the American Chemical Society. PMID 32924468 DOI: 10.1021/Jacs.0C08458  0.18
2022 Cheng Y, Feng S, Puchades C, Ko J, Figueroa E, Chen Y, Wu H, Gu S, Han T, Li J, Ho B, Shoichet B, Jan YN, Jan L. Identification of a conserved drug binding pocket in TMEM16 proteins. Research Square. PMID 35169791 DOI: 10.21203/rs.3.rs-1296933/v1  0.177
2023 Adly AN, Bi M, Carlson CR, Syed AM, Ciling A, Doudna JA, Cheng Y, Morgan DO. Assembly of SARS-CoV-2 ribonucleosomes by truncated N* variant of the nucleocapsid protein. The Journal of Biological Chemistry. 105362. PMID 37863261 DOI: 10.1016/j.jbc.2023.105362  0.176
2023 Arnold WR, Julius D, Cheng Y. Allosteric regulation of TRPV1 by the inflammatory lipid LPA. Biorxiv : the Preprint Server For Biology. PMID 37292745 DOI: 10.1101/2023.05.11.540281  0.162
2019 Feng S, Dang S, Han TW, Ye W, Jin P, Cheng T, Li J, Jan YN, Jan LY, Cheng Y. Cryo-EM Studies of TMEM16F Calcium-Activated Ion Channel Suggest Features Important for Lipid Scrambling. Cell Reports. 28: 567-579.e4. PMID 31291589 DOI: 10.1016/j.celrep.2019.06.023  0.16
2023 Xu Y, Cheng Y, Song Y, Ma H. New Density Matrix Renormalization Group Approaches for Strongly Correlated Systems Coupled with Large Environments. Journal of Chemical Theory and Computation. 19: 4781-4795. PMID 37471519 DOI: 10.1021/acs.jctc.2c01316  0.16
2022 Diver MM, King JVL, Julius D, Cheng Y. Sensory TRP Channels in Three Dimensions. Annual Review of Biochemistry. PMID 35287474 DOI: 10.1146/annurev-biochem-032620-105738  0.159
2020 Zhang Y, Lu WJ, Bulkley DP, Liang J, Ralko A, Han S, Roberts KJ, Li A, Cho W, Cheng Y, Manglik A, Beachy PA. Hedgehog pathway activation through nanobody-mediated conformational blockade of the Patched sterol conduit. Proceedings of the National Academy of Sciences of the United States of America. PMID 33139559 DOI: 10.1073/pnas.2011560117  0.154
2023 Lv J, Zhou X, Wang W, Cheng Y, Wang F. Solubilization mechanism of self-assembled walnut protein nanoparticles and curcumin encapsulation. Journal of the Science of Food and Agriculture. PMID 36929026 DOI: 10.1002/jsfa.12559  0.149
2022 Cheng Y, Xie Z, Ma H. Post-Density Matrix Renormalization Group Methods for Describing Dynamic Electron Correlation with Large Active Spaces. The Journal of Physical Chemistry Letters. 13: 904-915. PMID 35049302 DOI: 10.1021/acs.jpclett.1c04078  0.149
2022 Faust B, Billesbølle CB, Suomivuori CM, Singh I, Zhang K, Hoppe N, Pinto AFM, Diedrich JK, Muftuoglu Y, Szkudlinski MW, Saghatelian A, Dror RO, Cheng Y, Manglik A. Autoantibody mimicry of hormone action at the thyrotropin receptor. Nature. PMID 35940205 DOI: 10.1038/s41586-022-05159-1  0.146
2023 Feng S, Puchades C, Ko J, Wu H, Chen Y, Figueroa EE, Gu S, Han TW, Ho B, Cheng T, Li J, Shoichet B, Jan YN, Cheng Y, Jan LY. Identification of a drug binding pocket in TMEM16F calcium-activated ion channel and lipid scramblase. Nature Communications. 14: 4874. PMID 37573365 DOI: 10.1038/s41467-023-40410-x  0.137
2020 Wang B, Asarnow D, Lee WH, Huang CW, Faust B, Ng PML, Ngoh EZX, Bohn M, Bulkley D, Pizzorno A, Tan HC, Lee CY, Minhat RA, Terrier O, Soh MK, ... ... Cheng Y, et al. Bivalent binding of a fully human IgG to the SARS-CoV-2 spike proteins reveals mechanisms of potent neutralization. Biorxiv : the Preprint Server For Biology. PMID 32699850 DOI: 10.1101/2020.07.14.203414  0.134
2021 Cheng Y. TRPV1 and Piezo: the 2021 Nobel Prize in Physiology or Medicine. Iucrj. 9: 4-5. PMID 35059202 DOI: 10.1107/S2052252521013488  0.13
2023 Xie Z, Song Y, Peng F, Li J, Cheng Y, Zhang L, Ma Y, Tian Y, Luo Z, Ma H. Kylin 1.0: An ab-initio density matrix renormalization group quantum chemistry program. Journal of Computational Chemistry. PMID 36809661 DOI: 10.1002/jcc.27085  0.129
2023 Tang X, Wang Z, Khutsishvili D, Cheng Y, Wang J, Tang J, Ma S. Volumetric compression by heterogeneous scaffold embedding promotes cerebral organoid maturation and does not impede growth. Cell Systems. 14: 872-882.e3. PMID 37820730 DOI: 10.1016/j.cels.2023.09.004  0.126
2021 Harris JA, Faust B, Gondin AB, Dämgen MA, Suomivuori CM, Veldhuis NA, Cheng Y, Dror RO, Thal DM, Manglik A. Selective G protein signaling driven by substance P-neurokinin receptor dynamics. Nature Chemical Biology. PMID 34711980 DOI: 10.1038/s41589-021-00890-8  0.125
2024 Tian Z, Xia M, Cheng Y, Zhou J, Li R, Zhao S, Sun Q, Wang D. Surgical options and survival prognosis in geriatric patients beyond average lifespan with locally advanced gastric cancer: a propensity score-matched analysis. Surgical Endoscopy. PMID 38575830 DOI: 10.1007/s00464-024-10798-8  0.12
2024 Cheng Y, Ma H. Renormalized-Residue-Based Multireference Configuration Interaction Method for Strongly Correlated Systems. Journal of Chemical Theory and Computation. 20: 1988-2009. PMID 38380619 DOI: 10.1021/acs.jctc.3c01247  0.12
2022 Cheng Y, Mao M, Lu Y. The biology of YAP in programmed cell death. Biomarker Research. 10: 34. PMID 35606801 DOI: 10.1186/s40364-022-00365-5  0.12
2008 Frey G, Peng H, Rits-Volloch S, Morelli M, Cheng Y, Chen B. A fusion-intermediate state of HIV-1 gp41 targeted by broadly neutralizing antibodies. Proceedings of the National Academy of Sciences of the United States of America. 105: 3739-44. PMID 18322015 DOI: 10.1073/pnas.0800255105  0.115
2023 Zhu S, Cheng Y, Chen J, Liu G, Luo T, Yang R. Dynamically reversible cooperation and interaction of multiple rotating micromotors. Lab On a Chip. PMID 36880376 DOI: 10.1039/d3lc00108c  0.111
2018 Griep ER, Cheng Y, Moraru CI. Efficient removal of spores from skim milk using cold microfiltration: Spore size and surface property considerations. Journal of Dairy Science. PMID 30146287 DOI: 10.3168/Jds.2018-14888  0.099
2022 Zheng S, Wolff G, Greenan G, Chen Z, Faas FGA, Bárcena M, Koster AJ, Cheng Y, Agard DA. AreTomo: An integrated software package for automated marker-free, motion-corrected cryo-electron tomographic alignment and reconstruction. Journal of Structural Biology: X. 6: 100068. PMID 35601683 DOI: 10.1016/j.yjsbx.2022.100068  0.099
2020 Khlyustova A, Cheng Y, Yang R. Vapor-deposited functional polymer thin films in biological applications. Journal of Materials Chemistry. B. PMID 32756662 DOI: 10.1039/D0Tb00681E  0.099
2023 Sun G, Ye H, Liu H, Li T, Li J, Zhang X, Cheng Y, Wang K, Shi J, Dai L, Wang P. ZPR1 is an immunodiagnostic biomarker and promotes tumor progression in esophageal squamous cell carcinoma. Cancer Science. PMID 37964506 DOI: 10.1111/cas.16004  0.096
2017 Cheng Y, Moraru CI. Long-range interactions keep bacterial cells from liquid-solid interfaces: Evidence of a bacteria exclusion zone near Nafion surfaces and possible implications for bacterial attachment. Colloids and Surfaces. B, Biointerfaces. 162: 16-24. PMID 29132042 DOI: 10.1016/J.Colsurfb.2017.11.016  0.095
2021 Turnbaugh C, Axelrod JJ, Campbell SL, Dioquino JY, Petrov PN, Remis J, Schwartz O, Yu Z, Cheng Y, Glaeser RM, Mueller H. High-power near-concentric Fabry-Perot cavity for phase contrast electron microscopy. The Review of Scientific Instruments. 92: 053005. PMID 34243315 DOI: 10.1063/5.0045496  0.093
2023 Pan D, Hu J, Wang B, Xia X, Cheng Y, Wang CH, Lu Y. Biomimetic Wearable Sensors: Emerging Combination of Intelligence and Electronics. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2303264. PMID 38044298 DOI: 10.1002/advs.202303264  0.087
2020 Wang D, You Y, Zhou X, Zong Z, Huang H, Zhang H, Yong X, Cheng Y, Yang L, Guo Q, Long Y, Liu Y, Huang J, Du L. Selection of homemade mask materials for preventing transmission of COVID-19: A laboratory study. Plos One. 15: e0240285. PMID 33057355 DOI: 10.1371/journal.pone.0240285  0.087
2014 Li J, Liu D, Hua R, Zhang J, Liu W, Huo Y, Cheng Y, Hong J, Sun Y. Long non-coding RNAs expressed in pancreatic ductal adenocarcinoma and lncRNA BC008363 an independent prognostic factor in PDAC. Pancreatology : Official Journal of the International Association of Pancreatology (Iap) ... [Et Al.]. 14: 385-90. PMID 25200694 DOI: 10.1016/j.pan.2014.07.013  0.086
2020 Wang T, Tang J, Sun M, Liu X, Huang Y, Huang J, Han Y, Cheng Y, Huang Z, Li J. Identifying a transport mechanism of dust aerosols over South Asia to the Tibetan Plateau: A case study. The Science of the Total Environment. 143714. PMID 33223157 DOI: 10.1016/j.scitotenv.2020.143714  0.083
2022 Chen J, Cui Z, Wang Y, Lyu L, Feng C, Feng D, Cheng Y, Li Z, Sun S. Cyclic Polypeptide D7 Protects Bone Marrow Mesenchymal Cells and Promotes Chondrogenesis during Osteonecrosis of the Femoral Head via Growth Differentiation Factor 15-Mediated Redox Signaling. Oxidative Medicine and Cellular Longevity. 2022: 3182368. PMID 35281469 DOI: 10.1155/2022/3182368  0.079
2024 Cheng Y, Li M, Song Z, Li C. Performance of LWIR to VLWIR barrier photodetectors based on M-structure superlattices. Optics Express. 32: 2804-2816. PMID 38297800 DOI: 10.1364/OE.513610  0.076
2020 Yuan C, Yao Y, Cheng B, Cheng Y, Li Y, Li Y, Liu X, Cheng X, Xie X, Wu J, Wang X, Lu W. The application of deep learning based diagnostic system to cervical squamous intraepithelial lesions recognition in colposcopy images. Scientific Reports. 10: 11639. PMID 32669565 DOI: 10.1038/s41598-020-68252-3  0.076
2023 Sun G, Chen H, Xia J, Li T, Ye H, Li J, Zhang X, Cheng Y, Wang K, Shi J, Wang P. Diagnostic performance of anti-MAGEA family protein autoantibodies in esophageal squamous cell carcinoma. International Immunopharmacology. 125: 111041. PMID 37866309 DOI: 10.1016/j.intimp.2023.111041  0.075
2018 Cheng Y. Possible Approach to Dynamical Supersymmetry Breaking via Nambu-Jona-Lasinio Model Epj Web of Conferences. 182: 03002. DOI: 10.1051/EPJCONF/201818203002  0.073
2023 Li T, Wang P, Sun G, Zou Y, Cheng Y, Wang H, Lu Y, Shi J, Wang K, Zhang Q, Ye H. hccTAAb Atlas: An Integrated Knowledge Database for Tumor-Associated Autoantibodies in Hepatocellular Carcinoma. Journal of Proteome Research. PMID 38156953 DOI: 10.1021/acs.jproteome.3c00579  0.073
2022 Khlyustova A, Kirsch M, Ma X, Cheng Y, Yang R. Surfaces with antifouling-antimicrobial dual function immobilization of lysozyme on zwitterionic polymer thin films. Journal of Materials Chemistry. B. PMID 35156115 DOI: 10.1039/d1tb02597j  0.071
2023 Li Y, Ma R, Zhang R, Cheng Y, Dong C. A Tea Buds Counting Method Based on YOLOv5 and Kalman Filter Tracking Algorithm. Plant Phenomics (Washington, D.C.). 5: 0030. PMID 37011273 DOI: 10.34133/plantphenomics.0030  0.068
2020 Cheng Y, Chen H, Sánchez Basurto LA, Protasenko VV, Bharadwaj S, Islam M, Moraru CI. Inactivation of Listeria and E. coli by Deep-UV LED: effect of substrate conditions on inactivation kinetics. Scientific Reports. 10: 3411. PMID 32099043 DOI: 10.1038/S41598-020-60459-8  0.068
2019 Cheng Y, Dai Y, Faisel G, Kong OCW. Supersymmetric NJL-Type Model for a Real Superfield Composite Symmetry. 11: 1507. DOI: 10.3390/sym11121507  0.068
2023 Zhu S, Cheng Y, Wang J, Liu G, Luo T, Li X, Yang S, Yang R. Biohybrid magnetic microrobots: An intriguing and promising platform in biomedicine. Acta Biomaterialia. PMID 37572981 DOI: 10.1016/j.actbio.2023.08.005  0.067
2020 Huang B, Ling R, Cheng Y, Wen J, Dai Y, Huang W, Zhang S, Lu X, Luo Y, Jiang YZ. Characteristics of the Coronavirus Disease 2019 and related Therapeutic Options. Molecular Therapy. Methods & Clinical Development. 18: 367-375. PMID 32665963 DOI: 10.1016/j.omtm.2020.06.013  0.067
2014 Feng G, Cheng Y, Wang SY, Hsu LC, Feliz Y, Borca-Tasciuc DA, Worobo RW, Moraru CI. Alumina surfaces with nanoscale topography reduce attachment and biofilm formation by Escherichia coli and Listeria spp. Biofouling. 30: 1253-68. PMID 25427545 DOI: 10.1080/08927014.2014.976561  0.066
2021 Mao M, Cheng Y, Yang J, Chen Y, Xu L, Zhang X, Li Z, Chen C, Ju S, Zhou J, Wang L. Multifaced roles of PLAC8 in cancer. Biomarker Research. 9: 73. PMID 34627411 DOI: 10.1186/s40364-021-00329-1  0.064
2023 Song R, Cheng Y, Wen M, Song X, Wang T, Xia M, Sun H, Cheng M, Cui H, Yuan C, Liu X, Wang Z, Sun L, Wang H, Xiao J, et al. Transferring a new Fusarium head blight resistance locus FhbRc1 from Roegneria ciliaris into wheat by developing alien translocation lines. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 136: 36. PMID 36897377 DOI: 10.1007/s00122-023-04278-1  0.064
2021 Dai Y, Cheng M, Zhang S, Ling R, Wen J, Cheng Y, Huang B, Li J, Dai C, Mao S, Lin S, Shen H, Jiang Y. METTL3-Mediated mA RNA Modification Regulates Corneal Injury Repair. Stem Cells International. 2021: 5512153. PMID 34721590 DOI: 10.1155/2021/5512153  0.062
2020 Wen J, Cheng Y, Ling R, Dai Y, Huang B, Huang W, Zhang S, Jiang Y. Antibody-dependent enhancement of Coronavirus. International Journal of Infectious Diseases : Ijid : Official Publication of the International Society For Infectious Diseases. PMID 32920233 DOI: 10.1016/j.ijid.2020.09.015  0.061
2021 Seed RI, Kobayashi K, Ito S, Takasaka N, Cormier A, Jespersen JM, Publicover J, Trilok S, Combes AJ, Chew NW, Chapman J, Krummel MF, Lou J, Marks J, Cheng Y, et al. A tumor-specific mechanism of T enrichment mediated by the integrin αvβ8. Science Immunology. 6. PMID 33771888 DOI: 10.1126/sciimmunol.abf0558  0.061
2015 Feng G, Cheng Y, Wang SY, Borca-Tasciuc DA, Worobo RW, Moraru CI. Bacterial attachment and biofilm formation on surfaces are reduced by small-diameter nanoscale pores: how small is small enough? Npj Biofilms and Microbiomes. 1: 15022. PMID 28721236 DOI: 10.1038/npjbiofilms.2015.22  0.06
2022 Cheng Y, Lin Y, Long Y, Du L, Chen R, Hu T, Guo Q, Liao G, Huang J. Is the CyberKnife radiosurgery system effective and safe for patients? An umbrella review of the evidence. Future Oncology (London, England). PMID 35137603 DOI: 10.2217/fon-2021-0844  0.059
2015 Liu D, Li Z, Cheng Y, Bambi C. X-ray spectropolarimetric measurements of the Kerr metric The European Physical Journal C. 75. DOI: 10.1140/Epjc/S10052-015-3600-9  0.058
2022 Yin X, Cheng Y, Feng Y, Stiles WR, Park SH, Kang H, Choi HS. Phototheranostics for multifunctional treatment of cancer with fluorescence imaging. Advanced Drug Delivery Reviews. 189: 114483. PMID 35944585 DOI: 10.1016/j.addr.2022.114483  0.058
2021 Fan J, Feng Y, Cheng Y, Wang Z, Zhao H, Galan EA, Liao Q, Cui S, Zhang W, Ma S. Multiplex gene quantification as digital markers for extremely rapid evaluation of chemo-drug sensitivity. Patterns (New York, N.Y.). 2: 100360. PMID 34693378 DOI: 10.1016/j.patter.2021.100360  0.055
2019 Zhang Y, Wang S, Fan X, Xin J, Cheng Y. A temperature indicator for heavy air pollution risks (TIP). The Science of the Total Environment. 678: 712-720. PMID 31078862 DOI: 10.1016/j.scitotenv.2019.05.006  0.055
2023 Pan C, Cheng Y, He Q, Li M, Bu F, Li X, Xiang X. Evaluating the impact of co-administered drug and disease on ripretinib exposure: A physiologically-based pharmacokinetic modeling approach. Chemico-Biological Interactions. 110400. PMID 36773833 DOI: 10.1016/j.cbi.2023.110400  0.053
2019 Jia D, Lin W, Tang H, Cheng Y, Xu K, He Y, Geng W, Dai Q. Integrative analysis of DNA methylation and gene expression to identify key epigenetic genes in glioblastoma. Aging. 11. PMID 31395792 DOI: 10.18632/aging.102139  0.053
2019 Cheng Y, Feng G, Moraru CI. Micro- and Nanotopography Sensitive Bacterial Attachment Mechanisms: A Review. Frontiers in Microbiology. 10: 191. PMID 30846973 DOI: 10.3389/Fmicb.2019.00191  0.052
2018 Guo C, Yang K, Yan Y, Yan D, Cheng Y, Yan X, Qian N, Zhou Q, Chen B, Jiang M, Zhou H, Li C, Wang F, Qi J, Xu X, et al. SF-deferoxamine, a bone-seeking angiogenic drug, prevents bone loss in estrogen-deficient mice. Bone. PMID 30385424 DOI: 10.1016/j.bone.2018.10.025  0.049
2023 Gao C, Lai Y, Cheng L, Cheng Y, Miao A, Chen J, Yang R, Xiong F. PIP2 Alteration Caused by Elastic Modulus and Tropism of Electrospun Scaffolds Facilitates Altered BMSCs Proliferation and Differentiation. Advanced Materials (Deerfield Beach, Fla.). e2212272. PMID 36866457 DOI: 10.1002/adma.202212272  0.049
2023 Cheng Y, Ma X, Franklin T, Yang R, Moraru CI. Mechano-Bactericidal Surfaces: Mechanisms, Nanofabrication, and Prospects for Food Applications. Annual Review of Food Science and Technology. 14: 449-472. PMID 36972158 DOI: 10.1146/annurev-food-060721-022330  0.047
2023 Chen H, Cheng Y, Moraru CI. Blue 405 nm LED light effectively inactivates bacterial pathogens on substrates and packaging materials used in food processing. Scientific Reports. 13: 15472. PMID 37726297 DOI: 10.1038/s41598-023-42347-z  0.044
2023 Huang J, Wang B, Sun K, Zhang H, Bai F, Lian H, Lei C, Cheng Y, Nie K, Zang Y. Barriers and facilitators of implementing the practice programme for upright positions in the second stage of labour: A mixed-method study. Journal of Advanced Nursing. PMID 37921103 DOI: 10.1111/jan.15927  0.044
2019 Feng G, Cheng Y, Worobo RW, Borca-Tasciuc DA, Moraru CI. Nanoporous anodic alumina reduces Staphylococcus biofilm formation. Letters in Applied Microbiology. PMID 31357240 DOI: 10.1111/Lam.13201  0.043
2022 Huang Y, Pi Y, Ma K, Miao X, Fu S, Zhu Z, Cheng Y, Zhang Z, Chen H, Wang H, Gu H, Shao Y, Duan Y, Feng A, Zhuo W, et al. Deep Learning for Patient-Specific Quality Assurance: Predicting Gamma Passing Rates for IMRT Based on Delivery Fluence Informed by log Files. Technology in Cancer Research & Treatment. 21: 15330338221104881. PMID 35726209 DOI: 10.1177/15330338221104881  0.043
2022 Xu X, Cheng Y, Fang Z, Yin J, Shen H, Ma D. Identification and utilization of a new XY-1 against Fusarium head blight. Frontiers in Plant Science. 13: 1055213. PMID 36531390 DOI: 10.3389/fpls.2022.1055213  0.041
2016 Cheng Y, Liu D, Nampalliwar S, Bambi C. X-ray spectropolarimetric signature of a warped disk around a stellar-mass black hole Classical and Quantum Gravity. 33: 125015. DOI: 10.1088/0264-9381/33/12/125015  0.041
2022 Chen P, Lang J, Zhou Y, Khlyustova A, Zhang Z, Ma X, Liu S, Cheng Y, Yang R. An imidazolium-based zwitterionic polymer for antiviral and antibacterial dual functional coatings. Science Advances. 8: eabl8812. PMID 35030022 DOI: 10.1126/sciadv.abl8812  0.041
2022 Ma Y, Shen J, Zhang Y, Wang H, Li H, Cheng Y, Guo Y. Short-term effect of ambient ozone pollution on respiratory diseases in western China. Environmental Geochemistry and Health. PMID 35001229 DOI: 10.1007/s10653-021-01174-9  0.04
2023 Lin Q, Zhou D, Cheng Y, Wu C, Deng B. The Potential Predicting Value of D-dimer to Fibrinogen Ratio on Functional Outcome at 1 year after Acute Ischemic Stroke：A longitudinal study. Gerontology. PMID 37926080 DOI: 10.1159/000534768  0.038
2022 Guo Q, Cheng Y, Zhang C, Yang H, Chen X, Wang X, Yang L, Feng K, Long Y, Shao Z, Wang Y, Lin Y, Liao G, Huang J, Du L. A search of just four key databases would identify most randomized controlled trials of acupuncture: a meta-epidemiological study. Research Synthesis Methods. PMID 35716041 DOI: 10.1002/jrsm.1581  0.037
2023 Feng Y, Fan J, Cheng Y, Dai Q, Ma S. Stress regulates Alzheimer's disease progression via selective enrichment of CD8 T cells. Cell Reports. 42: 113313. PMID 37858461 DOI: 10.1016/j.celrep.2023.113313  0.037
2021 Guo Q, Lin Y, Zhang C, Guo Y, Long Y, Leng F, Gao J, Cheng Y, Yang L, Du L, Liao G, Huang J. Hemostatic Agent May Improve Perioperative Outcomes in Partial Nephrectomy: A Systematic Review and Meta-Analysis. Urologia Internationalis. 1-8. PMID 34350887 DOI: 10.1159/000518125  0.037
2022 Cao Y, Tan J, Zhao H, Deng T, Hu Y, Zeng J, Li J, Cheng Y, Tang J, Hu Z, Hu K, Xu B, Wang Z, Wu Y, Lobie PE, et al. Bead-jet printing enabled sparse mesenchymal stem cell patterning augments skeletal muscle and hair follicle regeneration. Nature Communications. 13: 7463. PMID 36460667 DOI: 10.1038/s41467-022-35183-8  0.036
2023 Chen F, Zhang GN, Lei W, Zhou SG, Zhang Y, Liu L, Jia Y, Xie RK, Tian XF, Guo J, Yang YB, Wang XF, Wu XM, Sun QJ, Zhou X, ... ... Cheng YF, et al. Effectiveness and safety of REBACIN as a non-invasive intervention for persistent high-risk human papillomavirus infection: A real-world prospective multicenter cohort study. Gynecologic Oncology. 178: 8-13. PMID 37734188 DOI: 10.1016/j.ygyno.2023.09.004  0.036
2021 Ralston Fonseca F, Craig M, Jaramillo P, Bergés M, Severnini E, Loew A, Zhai H, Cheng Y, Nijssen B, Voisin N, Yearsley J. Effects of Climate Change on Capacity Expansion Decisions of an Electricity Generation Fleet in the Southeast U.S. Environmental Science & Technology. PMID 33497216 DOI: 10.1021/acs.est.0c06547  0.035
2023 Huang W, Gu L, Wang J, Wang Y, Cao F, Jin T, Cheng Y. Causal association between vitamin D and diabetic neuropathy: a Mendelian randomization analysis. Endocrine. PMID 36754931 DOI: 10.1007/s12020-023-03315-9  0.035
2013 Cheng Y, Su Q, Shao B, Cheng J, Wang H, Wang L, Lin Z, Ruan L, ZhuGe Q, Jin K. 17 β -Estradiol attenuates poststroke depression and increases neurogenesis in female ovariectomized rats. Biomed Research International. 2013: 392434. PMID 24307996 DOI: 10.1155/2013/392434  0.034
2022 Wang CJ, Pang CY, Cheng YF, Wang H, Deng BB, Huang HJ. Monocyte-to-lymphocyte ratio affects prognosis in LAA-type stroke patients. Heliyon. 8: e10948. PMID 36247122 DOI: 10.1016/j.heliyon.2022.e10948  0.034
2021 Ralston Fonseca F, Craig M, Jaramillo P, Bergés M, Severnini E, Loew A, Zhai H, Cheng Y, Nijssen B, Voisin N, Yearsley J. Climate-Induced Tradeoffs in Planning and Operating Costs of a Regional Electricity System. Environmental Science & Technology. PMID 34342972 DOI: 10.1021/acs.est.1c01334  0.034
2021 Zhang W, Yu H, Lin Q, Liu X, Cheng Y, Deng B. Anti-inflammatory effect of resveratrol attenuates the severity of diabetic neuropathy by activating the Nrf2 pathway. Aging. 13. PMID 33770763 DOI: 10.18632/aging.202830  0.032
2023 Cao F, Wang Y, Wei R, Li C, Cheng Y, Zhou Y, Jin T, Zhang H, Lin L, Xu B. Peripheral Blood Th1/Th17 Immune Cell Shift is Associated with Disease Activity and Severity of AQP4 Antibody Sero-Positive Neuromyelitis Optica Spectrum Disorder. Neuropsychiatric Disease and Treatment. 19: 2413-2421. PMID 37965529 DOI: 10.2147/NDT.S425759  0.031
2023 Cheng Y, Chen Y, Li K, Liu S, Pang C, Gao L, Xie J, Wenjing LV, Yu H, Deng B. How inflammation dictates diabetic peripheral neuropathy: An enlightening review. Cns Neuroscience & Therapeutics. PMID 37795833 DOI: 10.1111/cns.14477  0.03
2006 Niu XY, Peng ZL, Duan WQ, Wang H, Chen YY, Fan YJ, Cheng YF, Qian XL. [Inhibition of HPV16 E6 oncogene in cervical cancer by RNA interference]. Sichuan Da Xue Xue Bao. Yi Xue Ban = Journal of Sichuan University. Medical Science Edition. 37: 14-8. PMID 16468632  0.03
2021 Luo S, Guo Q, Yang L, Cheng Y, Long Y, Wang X, Liu L, Yang Z, Hu T, Du L, Chen M, Liao G. Characteristic and Early Discontinuation of Obsessive-Compulsive Disorder Trials Registered on ClinicalTrials.gov. Frontiers in Psychiatry. 12: 650057. PMID 34381385 DOI: 10.3389/fpsyt.2021.650057  0.03
2012 Shao B, Cheng Y, Jin K. Estrogen, neuroprotection and neurogenesis after ischemic stroke. Current Drug Targets. 13: 188-98. PMID 22204318  0.029
2022 Ma Y, Wang H, Cheng B, Shen J, Li H, Guo Y, Cheng Y. Health risk of extreme low temperature on respiratory diseases in western China. Environmental Science and Pollution Research International. PMID 35060041 DOI: 10.1007/s11356-021-18194-8  0.029
2020 Long Y, Hu T, Liu L, Chen R, Guo Q, Yang L, Cheng Y, Huang J, Du L. Effectiveness of N95 respirators versus surgical masks against influenza: A systematic review and meta-analysis. Journal of Evidence-Based Medicine. PMID 32167245 DOI: 10.1111/jebm.12381  0.029
2023 Cheng Y, Mao M, Shang Y, Ying C, Guo L, Lu Y. Chemical sphincterotomy in posthemorrhoidectomy pain relief: a meta-analysis. Bmc Surgery. 23: 113. PMID 37161404 DOI: 10.1186/s12893-023-02025-3  0.029
2023 Pang C, Yu H, Cai Y, Song M, Feng F, Gao L, Li K, Chen Y, Xie J, Cheng Y, Lin E, Pan X, Zhang W, Deng B. Vitamin D and diabetic peripheral neuropathy: A multi-centre nerve conduction study among Chinese patients with type 2 diabetes. Diabetes/Metabolism Research and Reviews. e3679. PMID 37337761 DOI: 10.1002/dmrr.3679  0.029
2003 Luo J, Peng ZL, Wang H, Cheng YF, Yang KX, Xie L, Qian XL, Zou Y. [Tissue microarray and in situ hybridization study on hypoxia inducible factor 1alpha mRNA expression in epithelial ovarian tumor]. Zhonghua Zhong Liu Za Zhi [Chinese Journal of Oncology]. 25: 168-70. PMID 12795846  0.029
2019 Huang Y, Cheng Y, Shao B, Zhou X, Liang H, Zhuang J, Bi Y. Propensity Score-Matched Analysis of Lesion Patterns in Stroke Patients With Patent Foramen Ovale and Patients With Spontaneous Intracranial Artery Dissection. Frontiers in Neurology. 10: 418. PMID 31068900 DOI: 10.3389/fneur.2019.00418  0.028
2022 Mao M, Chen Y, Yang J, Cheng Y, Xu L, Ji F, Zhou J, Zhang X, Li Z, Chen C, Ju S, Zhang J, Wang L. Modification of PLAC8 by UFM1 affects tumorous proliferation and immune response by impacting PD-L1 levels in triple-negative breast cancer. Journal For Immunotherapy of Cancer. 10. PMID 36543379 DOI: 10.1136/jitc-2022-005668  0.028
2013 Arhrib A, Cheng Y, Kong OCW. Comprehensive analysis on lepton flavor violating Higgs boson toμ∓τ±decay in supersymmetry withoutRparity Physical Review D. 87. DOI: 10.1103/PhysRevD.87.015025  0.027
2020 Long Y, Luo S, Chen R, Xiao W, Wang X, Hu T, Guo Q, Yang L, Cheng Y, Lin Y, Huang J, Du L. Agreement of risk of bias varied in systematic reviews on acupuncture and was associated with methodological quality. Journal of Clinical Epidemiology. PMID 32987161 DOI: 10.1016/j.jclinepi.2020.08.017  0.027
2021 Chen YY, Cheng YF, Wang QP, Ye B, Huang CJ, Zhou CJ, Cai M, Ye YK, Liu CB. Modified procedure for prolapse and hemorrhoids: Lower recurrence, higher satisfaction. World Journal of Clinical Cases. 9: 36-46. PMID 33511170 DOI: 10.12998/wjcc.v9.i1.36  0.025
2019 Chen SY, Lin YS, Cheng YF, Wang H, Niu XT, Zhang WL. Mean Platelet Volume-To-Lymphocyte Ratio Predicts Poor Functional Outcomes Among Ischemic Stroke Patients Treated With Intravenous Thrombolysis. Frontiers in Neurology. 10: 1274. PMID 31920909 DOI: 10.3389/fneur.2019.01274  0.025
2020 Niu X, Cheng Y, Hu W, Fan Z, Zhang W, Shao B, Deng B. Application of bulbocavernosus reflex combined with anal sphincter electromyography in the diagnosis of MSA and PD. The International Journal of Neuroscience. 1-8. PMID 33148088 DOI: 10.1080/00207454.2020.1846533  0.024
2021 Cheng Y, Zhang W, Cao W, Shao M, Lin Y, Shao B, Yu H, Deng B. 2-BFI attenuates ischemic injury by modulating mTOR signaling and neuroinflammation in rats. Neuroscience Letters. 135766. PMID 33639221 DOI: 10.1016/j.neulet.2021.135766  0.023
2017 Yu T, Zhang W, Lin Y, Li Q, Xue J, Cai Z, Cheng Y, Shao B. Prognostic value of serum thioredoxin levels in ischemic stroke. Neurological Research. 1-8. PMID 28828929 DOI: 10.1080/01616412.2017.1359882  0.023
2017 Ye J, Cheng B, Cheng YF, Yao YL, Xie X, Lu WG, Cheng XD. Prognostic value of human papillomavirus 16/18 genotyping in low-grade cervical lesions preceded by mildly abnormal cytology. Journal of Zhejiang University. Science. B. 18: 249-255. PMID 28271660 DOI: 10.1631/jzus.B1600473  0.022
2019 Ye J, Cheng XD, Cheng B, Cheng YF, Chen XJ, Lu WG. MiRNA detection in cervical exfoliated cells for missed high-grade lesions in women with LSIL/CIN1 diagnosis after colposcopy-guided biopsy. Bmc Cancer. 19: 112. PMID 30700264 DOI: 10.1186/s12885-019-5311-3  0.022
2011 Sun Y, Gao X, Liu J, Kong QY, Wang XW, Chen XY, Wang Q, Cheng YF, Qu XX, Li H. Differential Notch1 and Notch2 expression and frequent activation of Notch signaling in gastric cancers. Archives of Pathology & Laboratory Medicine. 135: 451-8. PMID 21466361 DOI: 10.1043/2009-0665-OA.1  0.02
2022 Jin T, Huang W, Cao F, Yu X, Ying Z, Guo S, Cheng Y, Xu C. Causal association between adiponectin and the risk of Alzheimer's disease: A Mendelian randomization study. Frontiers in Neurology. 13: 1038975. PMID 36570466 DOI: 10.3389/fneur.2022.1038975  0.02
2023 Hu W, Cheng Y, Pan J, Wang X, Li S, Fan Z, Shao B, Niu X. Value of electrophysiological indicators in differential diagnosis of parkinson's disease and multiple system atrophy. Bmc Neurology. 23: 94. PMID 36864385 DOI: 10.1186/s12883-023-03131-8  0.019
2019 Zhou CJ, Cheng YF, Xie LZ, Hu WL, Chen B, Xu L, Huang CJ, Cai M, Shen X, Liu CB. Metabolic Syndrome, as Defined Based on Parameters Including Visceral Fat Area, Predicts Complications After Surgery for Rectal Cancer. Obesity Surgery. PMID 31625057 DOI: 10.1007/s11695-019-04163-1  0.018
2017 Yao YL, Tian QF, Cheng B, Cheng YF, Ye J, Lu WG. Human papillomavirus (HPV) E6/E7 mRNA detection in cervical exfoliated cells: a potential triage for HPV-positive women. Journal of Zhejiang University. Science. B. 18: 256-262. PMID 28271661 DOI: 10.1631/jzus.B1600288  0.017
2020 Song Y, Cheng Y, Ma Y, Ma H. Multi-reference Epstein–Nesbet perturbation theory with density matrix renormalization group reference wavefunction Electronic Structure. 2: 014002. DOI: 10.1088/2516-1075/ab72db  0.017
2019 Cheng Y, Chen Y, Zhou C, Shen L, Tu F, Xu J, Liu C. For colorectal cancer patients with type II diabetes, could metformin improve the survival rate? A meta-analysis. Clinics and Research in Hepatology and Gastroenterology. PMID 31300371 DOI: 10.1016/j.clinre.2019.06.009  0.016
2010 Cheng YF, Wang XY, Lü WG, Cheng XD, Xie X. [Cervical intraepithelial neoplasia 2+ in low-grade squamous intraepithelial lesion pathologically diagnosed by colposcopy-assisted biopsy]. Zhonghua Yi Xue Za Zhi. 90: 1882-5. PMID 20979903  0.015
2022 Guo Q, Lin Y, Zhang C, Leng F, Long Y, Cheng Y, Yang L, Du L, Huang J, Liao G. Is hemostatic agent effective and safe in minimally invasive partial nephrectomy? Chinese Medical Journal. PMID 35442229 DOI: 10.1097/CM9.0000000000001992  0.014
2023 Yin Y, Jin L, Chu M, Zhou Y, Tu S, Cheng Y, Ye M, Wu J, Chen H. Association between endocrine therapy and cognitive decline in breast cancer based on propensity score matching. Frontiers in Medicine. 10: 1132287. PMID 36778735 DOI: 10.3389/fmed.2023.1132287  0.014
2016 Su Q, Cheng Y, Jin K, Cheng J, Lin Y, Lin Z, Wang L, Shao B. Estrogen therapy increases BDNF expression and improves post-stroke depression in ovariectomy-treated rats. Experimental and Therapeutic Medicine. 12: 1843-1848. PMID 27602095 DOI: 10.3892/etm.2016.3531  0.012
2011 Fei HL, Cheng YF, Cheng XD, Chen XD, Ye F, Lü WG, Xie X. [Evaluation of five screening methods for an early detection of cervical cancer and its precancerous lesions in Zhejiang province]. Zhonghua Yi Xue Za Zhi. 91: 309-12. PMID 21419004  0.01
2019 Mao G, Alemayehu DG, Yang Y, Wen T, Ou Y, Cheng Y, Ren Z. The Effect of Intraoperative Vertebral Anesthesia on Osteoporotic Fractures Treated With Percutaneous Kyphoplasty: A Prospective Cohort Study. Clinical Spine Surgery. PMID 31021875 DOI: 10.1097/BSD.0000000000000823  0.01
2022 Cheng Y, Cao W, Zhang J, Wang J, Liu X, Wu Q, Lin Q. Determinants of Diabetic Peripheral Neuropathy and Their Clinical Significance: A Retrospective Cohort Study. Frontiers in Endocrinology. 13: 934020. PMID 35957831 DOI: 10.3389/fendo.2022.934020  0.01
2020 Liu Y, Long Y, Cheng Y, Guo Q, Yang L, Lin Y, Cao Y, Ye L, Jiang Y, Li K, Tian K, A X, Sun C, Zhang F, Song X, et al. Psychological Impact of the COVID-19 Outbreak on Nurses in China: A Nationwide Survey During the Outbreak. Frontiers in Psychiatry. 11: 598712. PMID 33362609 DOI: 10.3389/fpsyt.2020.598712  0.01
2018 Wang H, Cheng Y, Chen S, Li X, Zhu Z, Zhang W. Impact of Elevated Hemoglobin A1c Levels on Functional Outcome in Patients with Acute Ischemic Stroke. Journal of Stroke and Cerebrovascular Diseases : the Official Journal of National Stroke Association. PMID 30415918 DOI: 10.1016/j.jstrokecerebrovasdis.2018.10.026  0.01
2014 Cheng Y, Kong OC. Ambiguities and subtleties in fermion mass terms in practical quantum field theory Annals of Physics. 348: 315-323. DOI: 10.1016/j.aop.2014.05.024  0.01
2013 Arhrib A, Cheng Y, Kong OCW. Higgs to μ ∓ τ ± decay in supersymmetry without R-parity Epl (Europhysics Letters). 101: 31003. DOI: 10.1209/0295-5075/101/31003  0.01
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