David Muddiman, PhD - Publications

Affiliations: 
Chemistry North Carolina State University, Raleigh, NC 
Area:
Mass Spectrometry
Website:
http://www.ncsu.edu/chemistry/people/WMKeck_FTICR.html

245 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Caleb Bagley M, Garrard KP, Muddiman DC. The development and application of matrix assisted laser desorption electrospray ionization: The teenage years. Mass Spectrometry Reviews. PMID 34028071 DOI: 10.1002/mas.21696  0.52
2021 Muddiman DC, MacCoss MJ. Michael S. Bereman (1981-2021). Journal of the American Society For Mass Spectrometry. 32: 1272-1274. PMID 33947184 DOI: 10.1021/jasms.1c00129  0.8
2021 Tu A, Garrard KP, Said N, Muddiman DC. In situ Detection of Fatty Acid C=C Positional Isomers by Coupling On-tissue mCPBA Epoxidation with IR-MALDESI Mass Spectrometry. Rapid Communications in Mass Spectrometry : Rcm. e9119. PMID 33942403 DOI: 10.1002/rcm.9119  0.52
2021 Kalmar JG, Garrard KP, Muddiman DC. GlycoHunter: An Open-Source Software for the Detection and Relative Quantification of INLIGHT-Labeled N-Linked Glycans. Journal of Proteome Research. PMID 33417767 DOI: 10.1021/acs.jproteome.0c00840  0.52
2021 Bai H, Linder KE, Muddiman DC. Three-dimensional (3D) imaging of lipids in skin tissues with infrared matrix-assisted laser desorption electrospray ionization (MALDESI) mass spectrometry. Analytical and Bioanalytical Chemistry. PMID 33388847 DOI: 10.1007/s00216-020-03105-6  0.52
2020 Kalmar JG, Butler KE, Baker ES, Muddiman DC. Enhanced protocol for quantitative N-linked glycomics analysis using Individuality Normalization when Labeling with Isotopic Glycan Hydrazide Tags (INLIGHT)™. Analytical and Bioanalytical Chemistry. PMID 32844281 DOI: 10.1007/S00216-020-02892-2  0.56
2020 Kalmar JG, Oh Y, Dean RA, Muddiman DC. Comparative Proteomic Analysis of Wild Type and Mutant Lacking a SCF E3 Ligase F-box Protein in Magnaporthe oryzae. Journal of Proteome Research. PMID 32692924 DOI: 10.1021/Acs.Jproteome.0C00294  0.48
2020 Garrard KP, Ekelöf M, Khodjaniyazova S, Bagley MC, Muddiman DC. A Versatile Platform for Mass Spectrometry Imaging of Arbitrary Spatial Patterns. Journal of the American Society For Mass Spectrometry. PMID 32539373 DOI: 10.1021/jasms.0c00128  0.52
2020 Bereman MS, Kirkwood KI, Sabaretnam T, Furlong S, Rowe DB, Guillemin GJ, Mellinger AL, Muddiman DC. Metabolite Profiling Reveals Predictive Biomarkers and the Absence of β-Methyl Amino-l-alanine in Plasma from Individuals Diagnosed with Amyotrophic Lateral Sclerosis. Journal of Proteome Research. PMID 32418425 DOI: 10.1021/Acs.Jproteome.0C00216  1
2020 Bai H, Khodjaniyazova S, Garrard KP, Muddiman DC. Three-Dimensional Imaging with Infrared Matrix-Assisted Laser Desorption Electrospray Ionization Mass Spectrometry. Journal of the American Society For Mass Spectrometry. 31: 292-297. PMID 32031410 DOI: 10.1021/jasms.9b00066  0.64
2020 Ekeloef M, Dodds JN, Khodjaniyazova S, Garrard KP, Baker ES, Muddiman DC. Coupling IR-MALDESI with Drift Tube Ion Mobility-Mass Spectrometry for High-Throughput Screening and Imaging Applications. Journal of the American Society For Mass Spectrometry. PMID 31971795 DOI: 10.1021/Jasms.9B00081  0.56
2019 Kalmar JG, Oh Y, Dean RA, Muddiman DC. Investigating host-pathogen meta-metabolic interactions of Magnaporthe oryzae infected barley using infrared matrix-assisted laser desorption electrospray ionization mass spectrometry. Analytical and Bioanalytical Chemistry. PMID 31760448 DOI: 10.1007/S00216-019-02216-Z  0.48
2018 Ekelöf M, Garrard KP, Judd R, Rosen EP, Xie DY, Kashuba ADM, Muddiman DC. Evaluation of Digital Image Recognition Methods for Mass Spectrometry Imaging Data Analysis. Journal of the American Society For Mass Spectrometry. PMID 30324263 DOI: 10.1007/S13361-018-2073-0  0.52
2018 Yan X, Liu J, Kim H, Liu B, Huang X, Yang Z, Lin YC, Chen H, Yang C, Wang JP, Muddiman DC, Ralph J, Sederoff RR, Li Q, Chiang VL. CAD1 and CCR2 protein complex formation in monolignol biosynthesis in Populus trichocarpa. The New Phytologist. PMID 30276825 DOI: 10.1111/Nph.15505  0.32
2018 Wang JP, Matthews ML, Williams CM, Shi R, Yang C, Tunlaya-Anukit S, Chen HC, Li Q, Liu J, Lin CY, Naik P, Sun YH, Loziuk PL, Yeh TF, Kim H, ... ... Muddiman DC, et al. Improving wood properties for wood utilization through multi-omics integration in lignin biosynthesis. Nature Communications. 9: 1579. PMID 29679008 DOI: 10.1038/S41467-018-03863-Z  0.6
2018 Beri J, Kirkwood KI, Muddiman DC, Bereman MS. A novel integrated strategy for the detection and quantification of the neurotoxin β-N-methylamino-L-alanine in environmental samples. Analytical and Bioanalytical Chemistry. PMID 29455280 DOI: 10.1007/S00216-018-0930-0  1
2017 Khodjaniyazova S, Nazari M, Garrard KP, Matos MPV, Jackson GP, Muddiman DC. Characterization of the Spectral Accuracy of an Orbitrap Mass Analyzer using Isotope Ratio Mass Spectrometry. Analytical Chemistry. PMID 29281785 DOI: 10.1021/Acs.Analchem.7B03983  0.52
2017 Oh Y, Robertson SL, Parker J, Muddiman DC, Dean RA. Comparative proteomic analysis between nitrogen supplemented and starved conditions in Magnaporthe oryzae. Proteome Science. 15: 20. PMID 29158724 DOI: 10.1186/S12953-017-0128-Y  0.32
2017 Bokhart MT, Nazari M, Garrard KP, Muddiman DC. MSiReader v1.0: Evolving Open-Source Mass Spectrometry Imaging Software for Targeted and Untargeted Analyses. Journal of the American Society For Mass Spectrometry. PMID 28932998 DOI: 10.1007/s13361-017-1809-6  0.52
2017 Nazari M, Malico AA, Ekelöf M, Lund S, Williams GJ, Muddiman DC. Direct analysis of terpenes from biological buffer systems using SESI and IR-MALDESI. Analytical and Bioanalytical Chemistry. PMID 28819677 DOI: 10.1007/s00216-017-0570-9  0.44
2017 Bokhart MT, Manni J, Garrard KP, Ekelöf M, Nazari M, Muddiman DC. IR-MALDESI Mass Spectrometry Imaging at 50 Micron Spatial Resolution. Journal of the American Society For Mass Spectrometry. PMID 28721672 DOI: 10.1007/s13361-017-1740-x  0.52
2017 Kottke PA, Lee JY, Jonke AP, Seneviratne CA, Hecht ES, Muddiman DC, Torres MP, Fedorov AG. DRILL: An ESI-MS interface for improved sensitivity via inertial droplet sorting and electrohydrodynamic focusing in a swirling flow. Analytical Chemistry. PMID 28612611 DOI: 10.1021/Acs.Analchem.7B01555  0.52
2016 Parker J, Oh Y, Moazami Y, Pierce JG, Loziuk PL, Dean RA, Muddiman DC. Examining ubiquitinated peptide enrichment efficiency through an epitope labeled protein. Analytical Biochemistry. PMID 27562526 DOI: 10.1016/J.Ab.2016.08.017  1
2016 Nazari M, Muddiman DC. Enhanced Lipidome Coverage in Shotgun Analyses by using Gas-Phase Fractionation. Journal of the American Society For Mass Spectrometry. PMID 27562503 DOI: 10.1007/s13361-016-1446-5  1
2016 Loziuk PL, Hecht ES, Muddiman DC. N-linked glycosite profiling and use of Skyline as a platform for characterization and relative quantification of glycans in differentiating xylem of Populus trichocarpa. Analytical and Bioanalytical Chemistry. PMID 27491298 DOI: 10.1007/s00216-016-9776-5  1
2016 Sarkar P, Mischler A, Randall SM, Collier TS, Dorman KF, Boggess KA, Muddiman DC, Rao BM. Identification of epigenetic factor proteins expressed in human embryonic stem cell-derived trophoblasts and in human placental trophoblasts. Journal of Proteome Research. PMID 27378238 DOI: 10.1021/Acs.Jproteome.5B01118  0.88
2016 Heaven MR, Flint D, Randall SM, Sosunov AA, Wilson LB, Barnes S, Goldman JE, Muddiman DC, Brenner M. The Composition of Rosenthal Fibers, the Protein Aggregate Hallmark of Alexander Disease. Journal of Proteome Research. PMID 27193225 DOI: 10.1021/Acs.Jproteome.6B00316  1
2016 Nazari M, Bokhart MT, Muddiman DC. Whole-body Mass Spectrometry Imaging by Infrared Matrix-assisted Laser Desorption Electrospray Ionization (IR-MALDESI). Journal of Visualized Experiments : Jove. PMID 27077488 DOI: 10.3791/53942  1
2016 Hecht ES, McCord JP, Muddiman DC. A Quantitative Glycomics and Proteomics Combined Purification Strategy. Journal of Visualized Experiments : Jove. PMID 27023253 DOI: 10.3791/53735  1
2016 Hecht ES, Oberg AL, Muddiman DC. Optimizing Mass Spectrometry Analyses: A Tailored Review on the Utility of Design of Experiments. Journal of the American Society For Mass Spectrometry. PMID 26951559 DOI: 10.1007/s13361-016-1344-x  1
2016 Loziuk P, Meier F, Johnson C, Ghashghaei HT, Muddiman DC. TransOmic analysis of forebrain sections in Sp2 conditional knockout embryonic mice using IR-MALDESI imaging of lipids and LC-MS/MS label-free proteomics. Analytical and Bioanalytical Chemistry. PMID 26942738 DOI: 10.1007/S00216-016-9421-3  1
2016 Kazarian AA, Sanz Rodriguez E, Deverell JA, McCord J, Muddiman DC, Paull B. Wall modified photonic crystal fibre capillaries as porous layer open tubular columns for in-capillary micro-extraction and capillary chromatography. Analytica Chimica Acta. 905: 1-7. PMID 26755132 DOI: 10.1016/j.aca.2015.10.005  1
2016 Lin CY, Li Q, Tunlaya-Anukit S, Shi R, Sun YH, Wang JP, Liu J, Loziuk P, Edmunds CW, Miller ZD, Peszlen I, Muddiman DC, Sederoff RR, Chiang VL. A cell wall-bound anionic peroxidase, PtrPO21, is involved in lignin polymerization in Populus trichocarpa Tree Genetics and Genomes. 12. DOI: 10.1007/S11295-016-0978-Y  1
2015 Rosen EP, Thompson CG, Bokhart MT, Prince HM, Sykes C, Muddiman DC, Kashuba AD. Analysis of antiretrovirals in single hair strands for evaluation of drug adherence with IR-MALDESI MSI. Analytical Chemistry. PMID 26688545 DOI: 10.1021/Acs.Analchem.5B03794  1
2015 Muddiman DC. What if you could only publish 50 papers your entire career? Analytical and Bioanalytical Chemistry. PMID 26677017 DOI: 10.1007/s00216-015-9208-y  1
2015 Schilling J, Loziuk PL, Muddiman DC, Daniels HV, Reading BJ. Mechanisms of Egg Yolk Formation and Implications on Early Life History of White Perch (Morone americana). Plos One. 10: e0143225. PMID 26580971 DOI: 10.1371/Journal.Pone.0143225  1
2015 Rosen EP, Bokhart MT, Nazari M, Muddiman DC. Influence of C-Trap Ion Accumulation Time on the Detectability of Analytes in IR-MALDESI MSI. Analytical Chemistry. PMID 26414177 DOI: 10.1021/Acs.Analchem.5B02641  1
2015 Nazari M, Muddiman DC. Polarity switching mass spectrometry imaging of healthy and cancerous hen ovarian tissue sections by infrared matrix-assisted laser desorption electrospray ionization (IR-MALDESI). The Analyst. PMID 26402586 DOI: 10.1039/c5an01513h  1
2015 Hecht ES, Scholl EH, Walker SH, Taylor AD, Cliby WA, Motsinger-Reif AA, Muddiman DC. Relative Quantification and Higher-Order Modeling of the Plasma Glycan Cancer Burden Ratio in Ovarian Cancer Case-Control Samples. Journal of Proteome Research. 14: 4394-401. PMID 26347193 DOI: 10.1021/Acs.Jproteome.5B00703  1
2015 Loziuk PL, Parker J, Li W, Lin CY, Wang JP, Li Q, Sederoff RR, Chiang VL, Muddiman DC. Elucidation of Xylem-Specific Transcription Factors and Absolute Quantification of Enzymes Regulating Cellulose Biosynthesis in Populus trichocarpa. Journal of Proteome Research. PMID 26325666 DOI: 10.1021/Acs.Jproteome.5B00233  1
2015 Nepomuceno AI, Muddiman DC, Petitte JN. Global Proteomic Analysis of Functional Compartments in Immature Avian Follicles Using Laser Microdissection Coupled to LC-MS/MS. Journal of Proteome Research. 14: 3912-23. PMID 26211554 DOI: 10.1021/acs.jproteome.5b00346  1
2015 Nepomuceno AI, Shao H, Jing K, Ma Y, Petitte JN, Idowu MO, Muddiman DC, Fang X, Hawkridge AM. In-depth LC-MS/MS analysis of the chicken ovarian cancer proteome reveals conserved and novel differentially regulated proteins in humans. Analytical and Bioanalytical Chemistry. PMID 26159569 DOI: 10.1007/S00216-015-8862-4  1
2015 Wang JP, Chuang L, Loziuk PL, Chen H, Lin YC, Shi R, Qu GZ, Muddiman DC, Sederoff RR, Chiang VL. Phosphorylation is an on/off switch for 5-hydroxyconiferaldehyde O-methyltransferase activity in poplar monolignol biosynthesis. Proceedings of the National Academy of Sciences of the United States of America. PMID 26109572 DOI: 10.1073/Pnas.1510473112  1
2015 Barry JA, Groseclose MR, Robichaud G, Castellino S, Muddiman DC. Assessing drug and metabolite detection in liver tissue by UV-MALDI and IR-MALDESI mass spectrometry imaging coupled to FT-ICR MS. International Journal of Mass Spectrometry. 377: 448-155. PMID 26056514 DOI: 10.1016/J.Ijms.2014.05.012  0.64
2015 Franck WL, Gokce E, Randall SM, Oh Y, Eyre A, Muddiman DC, Dean RA. Phosphoproteome Analysis Links Protein Phosphorylation to Cellular Remodeling and Metabolic Adaptation during Magnaporthe oryzae Appressorium Development. Journal of Proteome Research. 14: 2408-24. PMID 25926025 DOI: 10.1021/Pr501064Q  1
2015 Schilling J, Nepomuceno AI, Planchart A, Yoder JA, Kelly RM, Muddiman DC, Daniels HV, Hiramatsu N, Reading BJ. Machine learning reveals sex-specific 17β-estradiol-responsive expression patterns in white perch (Morone americana) plasma proteins. Proteomics. PMID 25900664 DOI: 10.1002/Pmic.201400606  1
2015 Rosen EP, Bokhart MT, Ghashghaei HT, Muddiman DC. Influence of Desorption Conditions on Analyte Sensitivity and Internal Energy in Discrete Tissue or Whole Body Imaging by IR-MALDESI. Journal of the American Society For Mass Spectrometry. 26: 899-910. PMID 25840812 DOI: 10.1007/S13361-015-1114-1  1
2015 Thompson CG, Bokhart MT, Sykes C, Adamson L, Fedoriw Y, Luciw PA, Muddiman DC, Kashuba AD, Rosen EP. Mass spectrometry imaging reveals heterogeneous efavirenz distribution within putative HIV reservoirs. Antimicrobial Agents and Chemotherapy. 59: 2944-8. PMID 25733502 DOI: 10.1128/Aac.04952-14  1
2015 Sarkar P, Randall SM, Collier TS, Nero A, Russell TA, Muddiman DC, Rao BM. Activin/nodal signaling switches the terminal fate of human embryonic stem cell-derived trophoblasts. The Journal of Biological Chemistry. 290: 8834-48. PMID 25670856 DOI: 10.1074/Jbc.M114.620641  1
2015 Lin CY, Wang JP, Li Q, Chen HC, Liu J, Loziuk P, Song J, Williams C, Muddiman DC, Sederoff RR, Chiang VL. 4-Coumaroyl and caffeoyl shikimic acids inhibit 4-coumaric acid:coenzyme A ligases and modulate metabolic flux for 3-hydroxylation in monolignol biosynthesis of Populus trichocarpa. Molecular Plant. 8: 176-87. PMID 25578281 DOI: 10.1016/J.Molp.2014.12.003  1
2015 Nazari M, Muddiman DC. Cellular-level mass spectrometry imaging using infrared matrix-assisted laser desorption electrospray ionization (IR-MALDESI) by oversampling. Analytical and Bioanalytical Chemistry. 407: 2265-71. PMID 25486925 DOI: 10.1007/s00216-014-8376-5  1
2015 Bokhart MT, Rosen E, Thompson C, Sykes C, Kashuba AD, Muddiman DC. Quantitative mass spectrometry imaging of emtricitabine in cervical tissue model using infrared matrix-assisted laser desorption electrospray ionization. Analytical and Bioanalytical Chemistry. 407: 2073-84. PMID 25318460 DOI: 10.1007/S00216-014-8220-Y  1
2015 Cochran KH, Barry JA, Robichaud G, Muddiman DC. Analysis of trace fibers by IR-MALDESI imaging coupled with high resolving power MS. Analytical and Bioanalytical Chemistry. 407: 813-20. PMID 25081013 DOI: 10.1007/S00216-014-8042-Y  1
2015 Hecht ES, McCord JP, Muddiman DC. Definitive Screening Design Optimization of Mass Spectrometry Parameters for Sensitive Comparison of Filter and Solid Phase Extraction Purified, INLIGHT Plasma N-Glycans Analytical Chemistry. 87: 7305-7312. DOI: 10.1021/acs.analchem.5b01609  1
2015 Barry JA, Groseclose MR, Robichaud G, Castellino S, Muddiman DC. Assessing drug and metabolite detection in liver tissue by UV-MALDI and IR-MALDESI mass spectrometry imaging coupled to FT-ICR MS International Journal of Mass Spectrometry. 377: 448-455. DOI: 10.1016/j.ijms.2014.05.012  1
2015 Nazari M, Muddiman DC. MALDESI: Fundamentals, direct analysis, and MS imaging Advances in Maldi and Laser-Induced Soft Ionization Mass Spectrometry. 169-182. DOI: 10.1007/978-3-319-04819-2_9  1
2014 Hall JR, Bereman MS, Nepomuceno AI, Thompson EA, Muddiman DC, Smart RC. C/EBPα regulates CRL4(Cdt2)-mediated degradation of p21 in response to UVB-induced DNA damage to control the G1/S checkpoint. Cell Cycle (Georgetown, Tex.). 13: 3602-10. PMID 25483090 DOI: 10.4161/15384101.2014.962957  1
2014 Randall SM, Koryakina I, Williams GJ, Muddiman DC. Evaluating nonpolar surface area and liquid chromatography/mass spectrometry response: an application for site occupancy measurements for enzyme intermediates in polyketide biosynthesis. Rapid Communications in Mass Spectrometry : Rcm. 28: 2511-22. PMID 25366398 DOI: 10.1002/Rcm.7051  1
2014 Lin CY, Wang JP, Li Q, Chen HC, Liu J, Loziuk P, Song J, Williams C, Muddiman DC, Sederoff RR, Chiang VL. 4-Coumaroyl and Caffeoyl Shikimic Acids Inhibit 4-Coumaric Acid: Coenzyme A Ligases and Modulate Metabolic Flux for 3-Hydroxylation in Monolignol Biosynthesis of Populus trichocarpa. Molecular Plant. PMID 25336570 DOI: 10.1093/mp/ssu117  0.32
2014 Baker ES, Muddiman DC, Loo JA. Focus on advancing high performance mass spectrometry, honoring dr. Richard d. Smith, recipient of the 2013 award for a distinguished contribution in mass spectrometry. Journal of the American Society For Mass Spectrometry. 25: 1997-9. PMID 25326057 DOI: 10.1007/S13361-014-1007-8  0.56
2014 Meier F, Garrard KP, Muddiman DC. Silver dopants for targeted and untargeted direct analysis of unsaturated lipids via infrared matrix-assisted laser desorption electrospray ionization (IR-MALDESI). Rapid Communications in Mass Spectrometry : Rcm. 28: 2461-70. PMID 25303475 DOI: 10.1002/rcm.7041  1
2014 Loziuk PL, Sederoff RR, Chiang VL, Muddiman DC. Establishing ion ratio thresholds based on absolute peak area for absolute protein quantification using protein cleavage isotope dilution mass spectrometry. The Analyst. 139: 5439-50. PMID 25154770 DOI: 10.1039/C4An00567H  1
2014 Zhang J, Marega R, Chen LJ, Wu NW, Xu XD, Muddiman DC, Bonifazi D, Yang HB. Hierarchical self-assembly of supramolecular hydrophobic metallacycles into ordered nanostructures. Chemistry, An Asian Journal. 9: 2928-36. PMID 25139814 DOI: 10.1002/Asia.201402410  1
2014 Barry JA, Robichaud G, Bokhart MT, Thompson C, Sykes C, Kashuba AD, Muddiman DC. Mapping antiretroviral drugs in tissue by IR-MALDESI MSI coupled to the Q Exactive and comparison with LC-MS/MS SRM assay. Journal of the American Society For Mass Spectrometry. 25: 2038-47. PMID 24744212 DOI: 10.1007/S13361-014-0884-1  1
2014 Chen HC, Song J, Wang JP, Lin YC, Ducoste J, Shuford CM, Liu J, Li Q, Shi R, Nepomuceno A, Isik F, Muddiman DC, Williams C, Sederoff RR, Chiang VL. Systems biology of lignin biosynthesis in Populus trichocarpa: heteromeric 4-coumaric acid:coenzyme A ligase protein complex formation, regulation, and numerical modeling. The Plant Cell. 26: 876-93. PMID 24619612 DOI: 10.1105/Tpc.113.119685  1
2014 Wang JP, Naik PP, Chen HC, Shi R, Lin CY, Liu J, Shuford CM, Li Q, Sun YH, Tunlaya-Anukit S, Williams CM, Muddiman DC, Ducoste JJ, Sederoff RR, Chiang VL. Complete proteomic-based enzyme reaction and inhibition kinetics reveal how monolignol biosynthetic enzyme families affect metabolic flux and lignin in Populus trichocarpa. The Plant Cell. 26: 894-914. PMID 24619611 DOI: 10.1105/Tpc.113.120881  1
2014 Schilling J, Nepomuceno A, Schaff JE, Muddiman DC, Daniels HV, Reading BJ. Compartment proteomics analysis of white perch (Morone americana) ovary using support vector machines. Journal of Proteome Research. 13: 1515-26. PMID 24494930 DOI: 10.1021/Pr401067G  1
2014 Muddiman DC, Weintraub ST. Are presentations at ASMS conferences publications? Journal of the American Society For Mass Spectrometry. 25: 301-2. PMID 24385401 DOI: 10.1007/s13361-013-0791-x  1
2014 Robichaud G, Barry JA, Muddiman DC. IR-MALDESI mass spectrometry imaging of biological tissue sections using ice as a matrix. Journal of the American Society For Mass Spectrometry. 25: 319-28. PMID 24385399 DOI: 10.1007/S13361-013-0787-6  1
2014 Muddiman DC. Reply to the Comment on: "Utilizing artificial neural networks in MATLAB to achieve parts-per-billion mass measurement accuracy with a Fourier transform ion cyclotron resonance mass spectrometer" by D. Keith Williams Jr., Alexander L. Kovach, David C. Muddiman, and Kenneth W. Hanck. J. Am. Soc. Mass Spectrom. 20, 1303-1310 (2009). Journal of the American Society For Mass Spectrometry. 25: 697; discussion 698. PMID 24363170 DOI: 10.1007/s13361-013-0806-7  1
2014 Nepomuceno AI, Gibson RJ, Randall SM, Muddiman DC. Accurate identification of deamidated peptides in global proteomics using a quadrupole orbitrap mass spectrometer. Journal of Proteome Research. 13: 777-85. PMID 24289162 DOI: 10.1021/Pr400848N  1
2013 Loziuk PL, Wang J, Li Q, Sederoff RR, Chiang VL, Muddiman DC. Understanding the role of proteolytic digestion on discovery and targeted proteomic measurements using liquid chromatography tandem mass spectrometry and design of experiments. Journal of Proteome Research. 12: 5820-9. PMID 24144163 DOI: 10.1021/Pr4008442  1
2013 Randall SM, Cardasis HL, Muddiman DC. Factorial experimental designs elucidate significant variables affecting data acquisition on a quadrupole Orbitrap mass spectrometer. Journal of the American Society For Mass Spectrometry. 24: 1501-12. PMID 23913023 DOI: 10.1007/S13361-013-0693-Y  1
2013 Walker SH, Taylor AD, Muddiman DC. Individuality Normalization when Labeling with Isotopic Glycan Hydrazide Tags (INLIGHT): a novel glycan-relative quantification strategy. Journal of the American Society For Mass Spectrometry. 24: 1376-84. PMID 23860851 DOI: 10.1007/s13361-013-0681-2  1
2013 Shi R, Shuford CM, Wang JP, Sun YH, Yang Z, Chen HC, Tunlaya-Anukit S, Li Q, Liu J, Muddiman DC, Sederoff RR, Chiang VL. Regulation of phenylalanine ammonia-lyase (PAL) gene family in wood forming tissue of Populus trichocarpa. Planta. 238: 487-97. PMID 23765265 DOI: 10.1007/S00425-013-1905-1  1
2013 Barry JA, Robichaud G, Muddiman DC. Mass recalibration of FT-ICR mass spectrometry imaging data using the average frequency shift of ambient ions. Journal of the American Society For Mass Spectrometry. 24: 1137-45. PMID 23715870 DOI: 10.1007/S13361-013-0659-0  1
2013 Walker SH, Taylor AD, Muddiman DC. The use of a xylosylated plant glycoprotein as an internal standard accounting for N-linked glycan cleavage and sample preparation variability. Rapid Communications in Mass Spectrometry : Rcm. 27: 1354-8. PMID 23681813 DOI: 10.1002/rcm.6579  1
2013 Franck WL, Gokce E, Oh Y, Muddiman DC, Dean RA. Temporal analysis of the magnaporthe oryzae proteome during conidial germination and cyclic AMP (cAMP)-mediated appressorium formation. Molecular & Cellular Proteomics : McP. 12: 2249-65. PMID 23665591 DOI: 10.1074/Mcp.M112.025874  1
2013 Andrews Kingon GL, Petitte JN, Muddiman DC, Hawkridge AM. Multi-peptide nLC-PC-IDMS-SRM-based assay for the quantification of biomarkers in the chicken ovarian cancer model. Methods (San Diego, Calif.). 61: 323-30. PMID 23603217 DOI: 10.1016/j.ymeth.2013.04.004  1
2013 Robichaud G, Garrard KP, Barry JA, Muddiman DC. MSiReader: an open-source interface to view and analyze high resolving power MS imaging files on Matlab platform. Journal of the American Society For Mass Spectrometry. 24: 718-21. PMID 23536269 DOI: 10.1007/S13361-013-0607-Z  1
2013 White BL, Gökce E, Nepomuceno AI, Muddiman DC, Sanders TH, Davis JP. Comparative proteomic analysis and IgE binding properties of peanut seed and testa (skin). Journal of Agricultural and Food Chemistry. 61: 3957-68. PMID 23534881 DOI: 10.1021/Jf400184Y  1
2013 Chen HC, Song J, Williams CM, Shuford CM, Liu J, Wang JP, Li Q, Shi R, Gokce E, Ducoste J, Muddiman DC, Sederoff RR, Chiang VL. Monolignol pathway 4-coumaric acid:coenzyme A ligases in Populus trichocarpa: novel specificity, metabolic regulation, and simulation of coenzyme A ligation fluxes. Plant Physiology. 161: 1501-16. PMID 23344904 DOI: 10.1104/Pp.112.210971  1
2013 Cochran KH, Barry JA, Muddiman DC, Hinks D. Direct analysis of textile fabrics and dyes using infrared matrix-assisted laser desorption electrospray ionization mass spectrometry. Analytical Chemistry. 85: 831-6. PMID 23237031 DOI: 10.1021/Ac302519N  1
2013 Robichaud G, Barry JA, Garrard KP, Muddiman DC. Infrared matrix-assisted laser desorption electrospray ionization (IR-MALDESI) imaging source coupled to a FT-ICR mass spectrometer. Journal of the American Society For Mass Spectrometry. 24: 92-100. PMID 23208743 DOI: 10.1007/S13361-012-0505-9  1
2013 Koryakina I, McArthur J, Randall S, Draelos MM, Musiol EM, Muddiman DC, Weber T, Williams GJ. Poly specific trans-acyltransferase machinery revealed via engineered acyl-CoA synthetases. Acs Chemical Biology. 8: 200-8. PMID 23083014 DOI: 10.1021/Cb3003489  1
2012 Gokce E, Franck WL, Oh Y, Dean RA, Muddiman DC. In-depth analysis of the Magnaporthe oryzae conidial proteome. Journal of Proteome Research. 11: 5827-35. PMID 23039028 DOI: 10.1021/Pr300604S  1
2012 Sarkar P, Randall SM, Muddiman DC, Rao BM. Targeted proteomics of the secretory pathway reveals the secretome of mouse embryonic fibroblasts and human embryonic stem cells. Molecular & Cellular Proteomics : McP. 11: 1829-39. PMID 22984290 DOI: 10.1074/Mcp.M112.020503  1
2012 Walker SH, Carlisle BC, Muddiman DC. Systematic comparison of reverse phase and hydrophilic interaction liquid chromatography platforms for the analysis of N-linked glycans. Analytical Chemistry. 84: 8198-206. PMID 22954204 DOI: 10.1021/ac3012494  1
2012 Oh Y, Franck WL, Han SO, Shows A, Gokce E, Muddiman DC, Dean RA. Polyubiquitin is required for growth, development and pathogenicity in the rice blast fungus Magnaporthe oryzae. Plos One. 7: e42868. PMID 22900059 DOI: 10.1371/Journal.Pone.0042868  1
2012 Collier TS, Muddiman DC. Analytical strategies for the global quantification of intact proteins. Amino Acids. 43: 1109-17. PMID 22821264 DOI: 10.1007/S00726-012-1285-Z  1
2012 Wang JP, Shuford CM, Li Q, Song J, Lin YC, Sun YH, Chen HC, Williams CM, Muddiman DC, Sederoff RR, Chiang VL. Functional redundancy of the two 5-hydroxylases in monolignol biosynthesis of Populus trichocarpa: LC-MS/MS based protein quantification and metabolic flux analysis. Planta. 236: 795-808. PMID 22628084 DOI: 10.1007/S00425-012-1663-5  1
2012 Shuford CM, Sederoff RR, Chiang VL, Muddiman DC. Peptide production and decay rates affect the quantitative accuracy of protein cleavage isotope dilution mass spectrometry (PC-IDMS). Molecular & Cellular Proteomics : McP. 11: 814-23. PMID 22595788 DOI: 10.1074/Mcp.O112.017145  1
2012 Shuford CM, Li Q, Sun YH, Chen HC, Wang J, Shi R, Sederoff RR, Chiang VL, Muddiman DC. Comprehensive quantification of monolignol-pathway enzymes in Populus trichocarpa by protein cleavage isotope dilution mass spectrometry. Journal of Proteome Research. 11: 3390-404. PMID 22524869 DOI: 10.1021/Pr300205A  1
2012 Maurer HH, Muddiman DC. High-resolution mass spectrometry. Analytical and Bioanalytical Chemistry. 403: 1201-2. PMID 22488110 DOI: 10.1007/s00216-012-5959-x  1
2012 Sarkar P, Collier TS, Randall SM, Muddiman DC, Rao BM. The subcellular proteome of undifferentiated human embryonic stem cells. Proteomics. 12: 421-30. PMID 22144211 DOI: 10.1002/Pmic.201100507  1
2012 Shuford CM, Poteat MD, Buchwalter DB, Muddiman DC. Absolute quantification of free glutathione and cysteine in aquatic insects using isotope dilution and selected reaction monitoring. Analytical and Bioanalytical Chemistry. 402: 357-66. PMID 21956263 DOI: 10.1007/S00216-011-5416-2  1
2012 Li QJ, Zhao GZ, Chen LJ, Tan H, Wang CH, Wang DX, Lehman DA, Muddiman DC, Yang HB. Coordination-driven self-assembly of charged and neutral dendritic tetrakis(ferrocenyl) rhomboids Organometallics. 31: 7241-7247. DOI: 10.1021/om3007932  1
2012 Harton SE, Pingali SV, Nunnery GA, Baker DA, Walker SH, Muddiman DC, Koga T, Rials TG, Urban VS, Langan P. Evidence for complex molecular architectures for solvent-extracted lignins Acs Macro Letters. 1: 568-573. DOI: 10.1021/Mz300045E  1
2011 Chen HC, Li Q, Shuford CM, Liu J, Muddiman DC, Sederoff RR, Chiang VL. Membrane protein complexes catalyze both 4- and 3-hydroxylation of cinnamic acid derivatives in monolignol biosynthesis. Proceedings of the National Academy of Sciences of the United States of America. 108: 21253-8. PMID 22160716 DOI: 10.1073/Pnas.1116416109  1
2011 Barry JA, Muddiman DC. Global optimization of the infrared matrix-assisted laser desorption electrospray ionization (IR MALDESI) source for mass spectrometry using statistical design of experiments. Rapid Communications in Mass Spectrometry : Rcm. 25: 3527-36. PMID 22095501 DOI: 10.1002/rcm.5262  1
2011 Walker SH, Lilley LM, Enamorado MF, Comins DL, Muddiman DC. Hydrophobic derivatization of N-linked glycans for increased ion abundance in electrospray ionization mass spectrometry. Journal of the American Society For Mass Spectrometry. 22: 1309-17. PMID 21953184 DOI: 10.1007/S13361-011-0140-X  1
2011 Blake SL, Walker SH, Muddiman DC, Hinks D, Beck KR. Spectral accuracy and sulfur counting capabilities of the LTQ-FT-ICR and the LTQ-Orbitrap XL for small molecule analysis. Journal of the American Society For Mass Spectrometry. 22: 2269-75. PMID 21952785 DOI: 10.1007/S13361-011-0244-3  1
2011 Gokce E, Shuford CM, Franck WL, Dean RA, Muddiman DC. Evaluation of normalization methods on GeLC-MS/MS label-free spectral counting data to correct for variation during proteomic workflows. Journal of the American Society For Mass Spectrometry. 22: 2199-208. PMID 21952779 DOI: 10.1007/S13361-011-0237-2  1
2011 Bereman MS, Muddiman DC. N-linked global glycan profiling by nanoLC mass spectrometry. Methods in Molecular Biology (Clifton, N.J.). 790: 87-97. PMID 21948408 DOI: 10.1007/978-1-61779-319-6_7  1
2011 Dixon RB, Bereman MS, Petitte JN, Hawkridge AM, Muddiman DC. One-Year Plasma N-linked Glycome Intra-individual and Inter-individual Variability in the Chicken Model of Spontaneous Ovarian Adenocarcinoma. International Journal of Mass Spectrometry. 305: 79-86. PMID 21845070 DOI: 10.1016/J.Ijms.2010.05.023  1
2011 Collier TS, Randall SM, Sarkar P, Rao BM, Dean RA, Muddiman DC. Comparison of stable-isotope labeling with amino acids in cell culture and spectral counting for relative quantification of protein expression. Rapid Communications in Mass Spectrometry : Rcm. 25: 2524-32. PMID 21818813 DOI: 10.1002/Rcm.5151  1
2011 Walker SH, Budhathoki-Uprety J, Novak BM, Muddiman DC. Stable-isotope labeled hydrophobic hydrazide reagents for the relative quantification of N-linked glycans by electrospray ionization mass spectrometry. Analytical Chemistry. 83: 6738-45. PMID 21774516 DOI: 10.1021/Ac201376Q  0.96
2011 Chang KY, Muddiman DC. Identification of alternative splice variants in Aspergillus flavus through comparison of multiple tandem MS search algorithms. Bmc Genomics. 12: 358. PMID 21745387 DOI: 10.1186/1471-2164-12-358  1
2011 Shuford CM, Muddiman DC. Capitalizing on the hydrophobic bias of electrospray ionization through chemical modification in mass spectrometry-based proteomics. Expert Review of Proteomics. 8: 317-23. PMID 21679113 DOI: 10.1586/Epr.11.24  1
2011 Andrews GL, Simons BL, Young JB, Hawkridge AM, Muddiman DC. Performance characteristics of a new hybrid quadrupole time-of-flight tandem mass spectrometer (TripleTOF 5600). Analytical Chemistry. 83: 5442-6. PMID 21619048 DOI: 10.1021/ac200812d  1
2011 Robichaud G, Dixon RB, Potturi AS, Cassidy D, Edwards JR, Sohn A, Dow TA, Muddiman DC. Design, Modeling, Fabrication, and Evaluation of the Air Amplifier for Improved Detection of Biomolecules by Electrospray Ionization Mass Spectrometry. International Journal of Mass Spectrometry. 300: 99-107. PMID 21499524 DOI: 10.1016/J.Ijms.2010.04.006  1
2011 Andrews GL, Dean RA, Hawkridge AM, Muddiman DC. Improving proteome coverage on a LTQ-Orbitrap using design of experiments. Journal of the American Society For Mass Spectrometry. 22: 773-83. PMID 21472614 DOI: 10.1007/S13361-011-0075-2  1
2011 Gokce E, Andrews GL, Dean RA, Muddiman DC. Increasing proteome coverage with offline RP HPLC coupled to online RP nanoLC-MS. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 879: 610-4. PMID 21342794 DOI: 10.1016/J.Jchromb.2011.01.032  1
2011 Muddiman DC. Retrospective. John Bennett Fenn (1917-2010). Science (New York, N.Y.). 331: 160. PMID 21233376 DOI: 10.1126/science.1201766  1
2011 Zhao GZ, Li QJ, Chen LJ, Tan H, Wang CH, Lehman DA, Muddiman DC, Yang HB. Facile self-assembly of supramolecular hexakisferrocenyl triangles via coordination-driven self-assembly and their electrochemical behavior Organometallics. 30: 3637-3642. DOI: 10.1021/om2003305  1
2011 Samy El-Shall M, Muddiman DC. International Journal of Mass Spectrometry: Foreword International Journal of Mass Spectrometry. 300: 72-73. DOI: 10.1016/j.ijms.2010.11.015  1
2010 Shuford CM, Hawkridge AM, Burnett JC, Muddiman DC. Utilizing spectral counting to quantitatively characterize tandem removal of abundant proteins (TRAP) in human plasma. Analytical Chemistry. 82: 10179-85. PMID 21090636 DOI: 10.1021/Ac102248D  1
2010 Xu XD, Yang HB, Zheng YR, Ghosh K, Lyndon MM, Muddiman DC, Stang PJ. Self-assembly of dendritic tris(crown ether) hexagons and their complexation with dibenzylammonium cations. The Journal of Organic Chemistry. 75: 7373-80. PMID 20879776 DOI: 10.1021/Jo101648P  1
2010 Collier TS, Sarkar P, Franck WL, Rao BM, Dean RA, Muddiman DC. Direct comparison of stable isotope labeling by amino acids in cell culture and spectral counting for quantitative proteomics. Analytical Chemistry. 82: 8696-702. PMID 20845935 DOI: 10.1021/Ac101978B  1
2010 Hawkridge AM, Wysocky RB, Petitte JN, Anderson KE, Mozdziak PE, Fletcher OJ, Horowitz JM, Muddiman DC. Measuring the intra-individual variability of the plasma proteome in the chicken model of spontaneous ovarian adenocarcinoma. Analytical and Bioanalytical Chemistry. 398: 737-49. PMID 20640409 DOI: 10.1007/s00216-010-3979-y  1
2010 Andrews G, Lewis D, Notey J, Kelly R, Muddiman D. Part I: characterization of the extracellular proteome of the extreme thermophile Caldicellulosiruptor saccharolyticus by GeLC-MS2. Analytical and Bioanalytical Chemistry. 398: 377-89. PMID 20623222 DOI: 10.1007/S00216-010-3955-6  1
2010 Walker SH, Papas BN, Comins DL, Muddiman DC. Interplay of permanent charge and hydrophobicity in the electrospray ionization of glycans. Analytical Chemistry. 82: 6636-42. PMID 20590124 DOI: 10.1021/Ac101227A  1
2010 Andrews G, Lewis D, Notey J, Kelly R, Muddiman D. Part II: defining and quantifying individual and co-cultured intracellular proteomes of two thermophilic microorganisms by GeLC-MS2 and spectral counting. Analytical and Bioanalytical Chemistry. 398: 391-404. PMID 20582400 DOI: 10.1007/S00216-010-3929-8  1
2010 Dixon RB, Muddiman DC. Study of the ionization mechanism in hybrid laser based desorption techniques. The Analyst. 135: 880-2. PMID 20419234 DOI: 10.1039/b926422a  1
2010 Collier TS, Sarkar P, Rao B, Muddiman DC. Quantitative top-down proteomics of SILAC labeled human embryonic stem cells. Journal of the American Society For Mass Spectrometry. 21: 879-89. PMID 20199872 DOI: 10.1016/J.Jasms.2010.01.031  1
2010 Bereman MS, Muddiman DC. The effects of abundant plasma protein depletion on global glycan profiling using nanoLC FT-ICR mass spectrometry. Analytical and Bioanalytical Chemistry. 396: 1473-9. PMID 20087731 DOI: 10.1007/S00216-009-3368-6  1
2010 Yang H, Gurgel PV, Williams DK, Bobay BG, Cavanagh J, Muddiman DC, Carbonell RG. Binding site on human immunoglobulin G for the affinity ligand HWRGWV. Journal of Molecular Recognition : Jmr. 23: 271-82. PMID 20049844 DOI: 10.1002/Jmr.967  1
2010 Chang KY, Georgianna DR, Heber S, Payne GA, Muddiman DC. Detection of alternative splice variants at the proteome level in Aspergillus flavus. Journal of Proteome Research. 9: 1209-17. PMID 20047314 DOI: 10.1021/Pr900602D  1
2010 Bereman MS, Comins DL, Muddiman DC. Increasing the hydrophobicity and electrospray response of glycans through derivatization with novel cationic hydrazides. Chemical Communications (Cambridge, England). 46: 237-9. PMID 20024337 DOI: 10.1039/B915589A  1
2010 Shuford CM, Comins DL, Whitten JL, Burnett JC, Muddiman DC. Improving limits of detection for B-type natriuretic peptide using PC-IDMS: an application of the ALiPHAT strategy. The Analyst. 135: 36-41. PMID 20024179 DOI: 10.1039/B919484C  1
2010 Zhao GZ, Chen LJ, Wang CH, Yang HB, Ghosh K, Zheng YR, Lyndon MM, Muddiman DC, Stang PJ. Facile self-assembly of dendritic multiferrocenyl hexagons and their electrochemistry Organometallics. 29: 6137-6140. DOI: 10.1021/Om1008605  1
2010 Robichaud G, Dixon RB, Potturi AS, Edwards JR, Sohn A, Dow TA, Muddiman DC. Design, fabrication and testing of a high precision piezo-actuated air amplifier as an ion focusing device in mass spectrometry Proceedings - Aspe 2010 Annual Meeting. 50: 188-191.  1
2009 Hawkridge AM, Muddiman DC. Mass spectrometry-based biomarker discovery: toward a global proteome index of individuality. Annual Review of Analytical Chemistry (Palo Alto, Calif.). 2: 265-77. PMID 20636062 DOI: 10.1146/annurev.anchem.1.031207.112942  1
2009 Fields-Zinna CA, Sampson JS, Crowe MC, Tracy JB, Parker JF, deNey AM, Muddiman DC, Murray RW. Tandem mass spectrometry of thiolate-protected Au nanoparticles Na(x)Au25(SC2H4Ph)(18-y)(S(C2H4O)5CH3)(y). Journal of the American Chemical Society. 131: 13844-51. PMID 19736992 DOI: 10.1021/Ja905787Y  1
2009 Williams DK, Comins DL, Whitten JL, Muddiman DC. Evaluation of the ALiPHAT method for PC-IDMS and correlation of limits-of-detection with nonpolar surface area. Journal of the American Society For Mass Spectrometry. 20: 2006-12. PMID 19734056 DOI: 10.1016/J.Jasms.2009.07.019  1
2009 Tata PN, Subbotina N, Burckart GJ, Muddiman DC, Gusev AI, Hercules DM, Starzl TE, Venkataramanan R. Species-dependent hepatic metabolism of immunosuppressive agent tacrolimus (FK-506). Xenobiotica; the Fate of Foreign Compounds in Biological Systems. 39: 757-65. PMID 19604035 DOI: 10.1080/00498250903114478  1
2009 Alcazar O, Hawkridge AM, Collier TS, Cousins SW, Bhattacharya SK, Muddiman DC, Marin-Castano ME. Proteomics characterization of cell membrane blebs in human retinal pigment epithelium cells. Molecular & Cellular Proteomics : McP. 8: 2201-11. PMID 19567368 DOI: 10.1074/Mcp.M900203-Mcp200  1
2009 Forbes TP, Dixon RB, Muddiman DC, Degertekin FL, Fedorov AG. Characterization of charge separation in the Array of Micromachined UltraSonic Electrospray (AMUSE) ion source for mass spectrometry. Journal of the American Society For Mass Spectrometry. 20: 1684-7. PMID 19525123 DOI: 10.1016/J.Jasms.2009.05.006  1
2009 Sampson JS, Muddiman DC. Atmospheric pressure infrared (10.6 microm) laser desorption electrospray ionization (IR-LDESI) coupled to a LTQ Fourier transform ion cyclotron resonance mass spectrometer. Rapid Communications in Mass Spectrometry : Rcm. 23: 1989-92. PMID 19504481 DOI: 10.1002/Rcm.4113  1
2009 Bereman MS, Young DD, Deiters A, Muddiman DC. Development of a robust and high throughput method for profiling N-linked glycans derived from plasma glycoproteins by NanoLC-FTICR mass spectrometry. Journal of Proteome Research. 8: 3764-70. PMID 19435342 DOI: 10.1021/Pr9002323  1
2009 Williams DK, Kovach AL, Muddiman DC, Hanck KW. Utilizing artificial neural networks in MATLAB to achieve parts-per-billion mass measurement accuracy with a fourier transform ion cyclotron resonance mass spectrometer. Journal of the American Society For Mass Spectrometry. 20: 1303-10. PMID 19362012 DOI: 10.1016/j.jasms.2009.02.030  1
2009 Yang HB, Northrop BH, Zheng YR, Ghosh K, Lyndon MM, Muddiman DC, Stang PJ. Synthesis of six-component metallodendrimers via [3 + 3] coordination-driven self-assembly. The Journal of Organic Chemistry. 74: 3524-7. PMID 19344131 DOI: 10.1021/Jo900067V  1
2009 Andrews GL, Shuford CM, Burnett JC, Hawkridge AM, Muddiman DC. Coupling of a vented column with splitless nanoRPLC-ESI-MS for the improved separation and detection of brain natriuretic peptide-32 and its proteolytic peptides. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 877: 948-54. PMID 19269262 DOI: 10.1016/J.Jchromb.2009.02.040  1
2009 Williams DK, Muddiman DC. Absolute quantification of C-reactive protein in human plasma derived from patients with epithelial ovarian cancer utilizing protein cleavage isotope dilution mass spectrometry. Journal of Proteome Research. 8: 1085-90. PMID 19196186 DOI: 10.1021/pr800922p  1
2009 Sampson JS, Murray KK, Muddiman DC. Intact and top-down characterization of biomolecules and direct analysis using infrared matrix-assisted laser desorption electrospray ionization coupled to FT-ICR mass spectrometry. Journal of the American Society For Mass Spectrometry. 20: 667-73. PMID 19185512 DOI: 10.1016/J.Jasms.2008.12.003  1
2009 Bereman MS, Williams TI, Muddiman DC. Development of a nanoLC LTQ orbitrap mass spectrometric method for profiling glycans derived from plasma from healthy, benign tumor control, and epithelial ovarian cancer patients. Analytical Chemistry. 81: 1130-6. PMID 19113831 DOI: 10.1021/Ac802262W  1
2009 Dixon RB, Sampson JS, Muddiman DC. Generation of multiply charged peptides and proteins by radio frequency acoustic desorption and ionization for mass spectrometric detection. Journal of the American Society For Mass Spectrometry. 20: 597-600. PMID 19112029 DOI: 10.1016/J.Jasms.2008.11.024  1
2008 Sampson JS, Hawkridge AM, Muddiman DC. Construction of a versatile high precision ambient ionization source for direct analysis and imaging. Journal of the American Society For Mass Spectrometry. 19: 1527-34. PMID 18657438 DOI: 10.1016/J.Jasms.2008.06.013  1
2008 Sampson JS, Hawkridge AM, Muddiman DC. Development and characterization of an ionization technique for analysis of biological macromolecules: liquid matrix-assisted laser desorption electrospray ionization. Analytical Chemistry. 80: 6773-8. PMID 18656949 DOI: 10.1021/Ac8001935  1
2008 Williams DK, Chadwick MA, Williams TI, Muddiman DC. Calibration laws based on multiple linear regression applied to matrix-assisted laser desorption/ionization Fourier transform ion cyclotron resonance mass spectrometry. Journal of Mass Spectrometry : Jms. 43: 1659-63. PMID 18563853 DOI: 10.1002/jms.1451  1
2008 Georgianna DR, Hawkridge AM, Muddiman DC, Payne GA. Temperature-dependent regulation of proteins in Aspergillus flavus: whole organism stable isotope labeling by amino acids. Journal of Proteome Research. 7: 2973-9. PMID 18529071 DOI: 10.1021/Pr8001047  1
2008 Dixon RB, Sampson JS, Hawkridge AM, Muddiman DC. Ambient aerodynamic ionization source for remote analyte sampling and mass spectrometric analysis. Analytical Chemistry. 80: 5266-71. PMID 18529018 DOI: 10.1021/Ac800289F  1
2008 Collier TS, Hawkridge AM, Georgianna DR, Payne GA, Muddiman DC. Top-down identification and quantification of stable isotope labeled proteins from Aspergillus flavus using online nano-flow reversed-phase liquid chromatography coupled to a LTQ-FTICR mass spectrometer. Analytical Chemistry. 80: 4994-5001. PMID 18512951 DOI: 10.1021/Ac800254Z  1
2008 Caskey DC, Yamamoto T, Addicott C, Shoemaker RK, Vacek J, Hawkridge AM, Muddiman DC, Kottas GS, Michl J, Stang PJ. Coordination-driven face-directed self-assembly of trigonal prisms. Face-based conformational chirality. Journal of the American Chemical Society. 130: 7620-8. PMID 18491898 DOI: 10.1021/Ja710715E  1
2008 Hawkridge AM, Muddiman DC, Hebulein DM, Cataliotti A, Burnett JC. Effect of plasma protein depletion on BNP-32 recovery. Clinical Chemistry. 54: 933-4. PMID 18443186 DOI: 10.1373/clinchem.2007.098038  1
2008 Williams TI, Saggese DA, Muddiman DC. Studying O-linked protein glycosylations in human plasma. Journal of Proteome Research. 7: 2562-8. PMID 18422354 DOI: 10.1021/pr800066e  1
2008 Bereman MS, Lyndon MM, Dixon RB, Muddiman DC. Mass measurement accuracy comparisons between a double-focusing magnetic sector and a time-of-flight mass analyzer. Rapid Communications in Mass Spectrometry : Rcm. 22: 1563-6. PMID 18421754 DOI: 10.1002/Rcm.3544  1
2008 Ghosh K, Yang HB, Northrop BH, Lyndon MM, Zheng YR, Muddiman DC, Stang PJ. Coordination-driven self-assembly of cavity-cored multiple crown ether derivatives and poly[2]pseudorotaxanes. Journal of the American Chemical Society. 130: 5320-34. PMID 18341280 DOI: 10.1021/Ja711502T  1
2008 Williams TI, Saggese DA, Toups KL, Frahm JL, An HJ, Li B, Lebrilla CB, Muddiman DC. Investigations with O-linked protein glycosylations by matrix-assisted laser desorption/ionization Fourier transform ion cyclotron resonance mass spectrometry. Journal of Mass Spectrometry : Jms. 43: 1215-23. PMID 18324610 DOI: 10.1002/Jms.1398  1
2008 Williams DK, Meadows CW, Bori ID, Hawkridge AM, Comins DL, Muddiman DC. Synthesis, characterization, and application of iodoacetamide derivatives utilized for the ALiPHAT strategy. Journal of the American Chemical Society. 130: 2122-3. PMID 18220392 DOI: 10.1021/Ja076849Y  1
2008 Yang HB, Ghosh K, Zhao Y, Northrop BH, Lyndon MM, Muddiman DC, White HS, Stang PJ. A new family of multiferrocene complexes with enhanced control of structure and stoichiometry via coordination-driven self-assembly and their electrochemistry. Journal of the American Chemical Society. 130: 839-41. PMID 18166061 DOI: 10.1021/Ja710349J  1
2008 Dixon RB, Edwards JR, Sohn A, Dow TA, Muddiman DC. Can the diagnostic and prognostic value of prostate specific antigen be improved by harnessing the specificity of mass spectrometry? Aiche Annual Meeting, Conference Proceedings 1
2007 Yang HB, Ghosh K, Northrop BH, Zheng YR, Lyndon MM, Muddiman DC, Stang PJ. A highly efficient approach to the self-assembly of hexagonal cavity-cored tris[2]pseudorotaxanes from several components via multiple noncovalent interactions. Journal of the American Chemical Society. 129: 14187-9. PMID 17963382 DOI: 10.1021/Ja073744M  1
2007 Bereman MS, Williams TI, Muddiman DC. Carbohydrate analysis by desorption electrospray ionization fourier transform ion cyclotron resonance mass spectrometry. Analytical Chemistry. 79: 8812-5. PMID 17918969 DOI: 10.1021/Ac0713858  1
2007 Williams DK, McAlister GC, Good DM, Coon JJ, Muddiman DC. Dual electrospray ion source for electron-transfer dissociation on a hybrid linear ion trap-orbitrap mass spectrometer. Analytical Chemistry. 79: 7916-9. PMID 17867655 DOI: 10.1021/Ac071444H  1
2007 Dixon RB, Muddiman DC, Hawkridge AM, Fedorov AG. Probing the mechanisms of an air amplifier using a LTQ-FT-ICR-MS and fluorescence spectroscopy. Journal of the American Society For Mass Spectrometry. 18: 1909-13. PMID 17855111 DOI: 10.1016/j.jasms.2007.08.006  1
2007 Ogata Y, Charlesworth MC, Higgins L, Keegan BM, Vernino S, Muddiman DC. Differential protein expression in male and female human lumbar cerebrospinal fluid using iTRAQ reagents after abundant protein depletion. Proteomics. 7: 3726-34. PMID 17853512 DOI: 10.1002/pmic.200700455  1
2007 Dixon RB, Muddiman DC. Quantitative comparison of a flared and a standard heated metal capillary inlet with a voltage-assisted air amplifier on an electrospray ionization linear ion trap mass spectrometer. Rapid Communications in Mass Spectrometry : Rcm. 21: 3207-12. PMID 17764103 DOI: 10.1002/rcm.3206  1
2007 Hoye TR, Dvornikovs V, Fine JM, Anderson KR, Jeffrey CS, Muddiman DC, Shao F, Sorensen PW, Wang J. Details of the structure determination of the sulfated steroids PSDS and PADS: new components of the sea lamprey (petromyzon marinus) migratory pheromone. The Journal of Organic Chemistry. 72: 7544-50. PMID 17718505 DOI: 10.1021/Jo070957L  1
2007 Dixon RB, Bereman MS, Muddiman DC, Hawkridge AM. Remote mass spectrometric sampling of electrospray- and desorption electrospray-generated ions using an air ejector. Journal of the American Society For Mass Spectrometry. 18: 1844-7. PMID 17716909 DOI: 10.1016/J.Jasms.2007.07.024  1
2007 Williams TI, Toups KL, Saggese DA, Kalli KR, Cliby WA, Muddiman DC. Epithelial ovarian cancer: disease etiology, treatment, detection, and investigational gene, metabolite, and protein biomarkers. Journal of Proteome Research. 6: 2936-62. PMID 17583933 DOI: 10.1021/pr070041v  1
2007 Williams DK, Muddiman DC. Parts-per-billion mass measurement accuracy achieved through the combination of multiple linear regression and automatic gain control in a Fourier transform ion cyclotron resonance mass spectrometer. Analytical Chemistry. 79: 5058-63. PMID 17539605 DOI: 10.1021/ac0704210  1
2007 Frahm JL, Bori ID, Comins DL, Hawkridge AM, Muddimana DC. Achieving augmented limits of detection for peptides with hydrophobic alkyl tags. Analytical Chemistry. 79: 3989-95. PMID 17477508 DOI: 10.1021/Ac070558Q  1
2007 Bereman MS, Muddiman DC. Detection of attomole amounts of analyte by desorption electrospray ionization mass spectrometry (DESI-MS) determined using fluorescence spectroscopy. Journal of the American Society For Mass Spectrometry. 18: 1093-6. PMID 17448675 DOI: 10.1016/J.Jasms.2007.03.006  1
2007 Frahm JL, Velez CM, Muddiman DC. Understanding the influence of post-excite radius and axial confinement on quantitative proteomic measurements using Fourier transform ion cyclotron resonance mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 21: 1196-204. PMID 17330212 DOI: 10.1002/Rcm.2957  1
2007 Sampson JS, Hawkridge AM, Muddiman DC. Direct characterization of intact polypeptides by matrix-assisted laser desorption electrospray ionization quadrupole Fourier transform ion cyclotron resonance mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 21: 1150-4. PMID 17318926 DOI: 10.1002/Rcm.2947  1
2007 Williams TI, Saggese DA, Wilcox RJ, Martin JD, Muddiman DC. Effect of matrix crystal structure on ion abundance of carbohydrates by matrix-assisted laser desorption/ionization Fourier transform ion cyclotron resonance mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 21: 807-11. PMID 17279479 DOI: 10.1002/Rcm.2904  1
2007 Yang HB, Hawkridge AM, Huang SD, Das N, Bunge SD, Muddiman DC, Stang PJ. Coordination-driven self-assembly of metallodendrimers possessing well-defined and controllable cavities as cores. Journal of the American Chemical Society. 129: 2120-9. PMID 17256935 DOI: 10.1021/Ja066804H  1
2007 Mason CJ, Therneau TM, Eckel-Passow JE, Johnson KL, Oberg AL, Olson JE, Nair KS, Muddiman DC, Bergen HR. A method for automatically interpreting mass spectra of 18O-labeled isotopic clusters. Molecular & Cellular Proteomics : McP. 6: 305-18. PMID 17068186 DOI: 10.1074/Mcp.M600148-Mcp200  1
2007 Williams DK, Hawkridge AM, Muddiman DC. Sub parts-per-million mass measurement accuracy of intact proteins and product ions achieved using a dual electrospray ionization quadrupole fourier transform ion cyclotron resonance mass spectrometer. Journal of the American Society For Mass Spectrometry. 18: 1-7. PMID 16979902 DOI: 10.1016/j.jasms.2006.08.014  1
2006 Ogata Y, Heppelmann CJ, Hepplmann CJ, Charlesworth MC, Madden BJ, Miller MN, Kalli KR, Cilby WA, Bergen HR, Saggese DA, Muddiman DC. Elevated levels of phosphorylated fibrinogen-alpha-isoforms and differential expression of other post-translationally modified proteins in the plasma of ovarian cancer patients. Journal of Proteome Research. 5: 3318-25. PMID 17137333 DOI: 10.1021/pr060344+  1
2006 Bereman MS, Nyadong L, Fernandez FM, Muddiman DC. Direct high-resolution peptide and protein analysis by desorption electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 20: 3409-11. PMID 17051610 DOI: 10.1002/Rcm.2759  1
2006 Sampson JS, Hawkridge AM, Muddiman DC. Generation and detection of multiply-charged peptides and proteins by matrix-assisted laser desorption electrospray ionization (MALDESI) Fourier transform ion cyclotron resonance mass spectrometry. Journal of the American Society For Mass Spectrometry. 17: 1712-6. PMID 16952462 DOI: 10.1016/J.Jasms.2006.08.003  1
2006 Yang HB, Das N, Huang F, Hawkridge AM, Díaz DD, Arif AM, Finn MG, Muddiman DC, Stang PJ. Incorporation of 2,6-di(4,4'-dipyridyl)-9-thiabicyclo[3.3.1]nonane into discrete 2D supramolecules via coordination-driven self-assembly. The Journal of Organic Chemistry. 71: 6644-7. PMID 16901162 DOI: 10.1021/Jo0608117  1
2006 Yang HB, Das N, Huang F, Hawkridge AM, Muddiman DC, Stang PJ. Molecular architecture via coordination: self-assembly of nanoscale hexagonal metallodendrimers with designed building blocks. Journal of the American Chemical Society. 128: 10014-5. PMID 16881621 DOI: 10.1021/Ja063377Z  1
2006 Limbach P, Muddiman D. Focus in honor of James A. McCloskey, recipient of the 2005 ASMS Award for a Distinguished Contribution in Mass Spectrometry. Journal of the American Society For Mass Spectrometry. 17: i-ii. PMID 16875838 DOI: 10.1016/j.jasms.2006.07.003  1
2006 Frahm JL, Howard BE, Heber S, Muddiman DC. Accessible proteomics space and its implications for peak capacity for zero-, one- and two-dimensional separations coupled with FT-ICR and TOF mass spectrometry. Journal of Mass Spectrometry : Jms. 41: 281-8. PMID 16538648 DOI: 10.1002/Jms.1024  1
2006 Zhou H, Madden BJ, Muddiman DC, Zhang Z. Chromatin assembly factor 1 interacts with histone H3 methylated at lysine 79 in the processes of epigenetic silencing and DNA repair. Biochemistry. 45: 2852-61. PMID 16503640 DOI: 10.1021/bi0521083  1
2006 Muddiman DC. "Lewis and Clark" proteomics. Journal of Proteome Research. 5: 221-2. PMID 16502570 DOI: 10.1021/pr0626886  1
2006 Kang S, Hawkridge AM, Johnson KL, Muddiman DC, Prevelige PE. Identification of subunit-subunit interactions in bacteriophage P22 procapsids by chemical cross-linking and mass spectrometry. Journal of Proteome Research. 5: 370-7. PMID 16457603 DOI: 10.1021/Pr050356F  1
2005 Mason CJ, Johnson KL, Muddiman DC. Reproducibility of retention time using a splitless nanoLC coupled to an ESI-FTICR mass spectrometer. Journal of Biomolecular Techniques : Jbt. 16: 414-22. PMID 16522864  1
2005 Johnson KL, Ovsyannikova IG, Poland GA, Muddiman DC. Identification of class II HLA-DRB1*03-bound measles virus peptides by 2D-liquid chromatography tandem mass spectrometry. Journal of Proteome Research. 4: 2243-9. PMID 16335972 DOI: 10.1021/pr0501416  1
2005 Hawkridge AM, Heublein DM, Bergen HR, Cataliotti A, Burnett JC, Muddiman DC. Quantitative mass spectral evidence for the absence of circulating brain natriuretic peptide (BNP-32) in severe human heart failure. Proceedings of the National Academy of Sciences of the United States of America. 102: 17442-7. PMID 16293687 DOI: 10.1073/pnas.0508782102  1
2005 Yang P, Cooks RG, Ouyang Z, Hawkridge AM, Muddiman DC. Gentle protein ionization assisted by high-velocity gas flow. Analytical Chemistry. 77: 6174-83. PMID 16194076 DOI: 10.1021/Ac050711L  1
2005 Johnson KL, Ovsyannikova IG, Madden BJ, Poland GA, Muddiman DC. Accurate mass precursor ion data and tandem mass spectrometry identify a class I human leukocyte antigen A*0201-presented peptide originating from vaccinia virus. Journal of the American Society For Mass Spectrometry. 16: 1812-7. PMID 16185891 DOI: 10.1016/j.jasms.2005.07.015  1
2005 Bergen HR, Muddiman DC, O'Brien JF, Hoyer JD. Normalization of relative peptide ratios derived from in-gel digests: applications to protein variant analysis at the peptide level. Rapid Communications in Mass Spectrometry : Rcm. 19: 2871-7. PMID 16155979 DOI: 10.1002/rcm.2134  1
2005 Jude H, Disteldorf H, Fischer S, Wedge T, Hawkridge AM, Arif AM, Hawthorne MF, Muddiman DC, Stang PJ. Coordination-driven self-assemblies with a carborane backbone. Journal of the American Chemical Society. 127: 12131-9. PMID 16117555 DOI: 10.1021/Ja053050I  1
2005 Frahm JL, Muddiman DC. Nucleic Acid analysis by fourier transform ion cyclotron resonance mass spectrometry at the beginning of the twenty-first century. Current Pharmaceutical Design. 11: 2593-613. PMID 16101461 DOI: 10.2174/1381612054546905  1
2005 Barnidge DR, Jelinek DF, Muddiman DC, Kay NE. Quantitative protein expression analysis of CLL B cells from mutated and unmutated IgV(H) subgroups using acid-cleavable isotope-coded affinity tag reagents. Journal of Proteome Research. 4: 1310-7. PMID 16083281 DOI: 10.1021/Pr050028F  1
2005 Fautsch MP, Howell KG, Vrabel AM, Charlesworth MC, Muddiman DC, Johnson DH. Primary trabecular meshwork cells incubated in human aqueous humor differ from cells incubated in serum supplements. Investigative Ophthalmology & Visual Science. 46: 2848-56. PMID 16043859 DOI: 10.1167/iovs.05-0101  1
2005 Swanson DL, Pittelkow MR, Benson LM, Hawkridge AM, Muddiman DC. Déjà vu all over again: skin cap still contains a high-potency glucocorticosteroid. Archives of Dermatology. 141: 801-3. PMID 15967944 DOI: 10.1001/archderm.141.6.801  1
2005 Ogata Y, Charlesworth MC, Muddiman DC. Evaluation of protein depletion methods for the analysis of total-, phospho- and glycoproteins in lumbar cerebrospinal fluid. Journal of Proteome Research. 4: 837-45. PMID 15952730 DOI: 10.1021/pr049750o  1
2005 Frahm JL, Muddiman DC, Burke MJ. Leveling response factors in the electrospray ionization process using a heated capillary interface. Journal of the American Society For Mass Spectrometry. 16: 772-8. PMID 15862778 DOI: 10.1016/J.Jasms.2005.02.002  1
2005 Muddiman DC, Oberg AL. Statistical evaluation of internal and external mass calibration laws utilized in fourier transform ion cyclotron resonance mass spectrometry. Analytical Chemistry. 77: 2406-14. PMID 15828774 DOI: 10.1021/ac048258l  1
2005 McCormick DJ, Holmes MW, Muddiman DC, Madden BJ. Mapping sites of protein phosphorylation by mass spectrometry utilizing a chemical-enzymatic approach: characterization of products from alpha-S1 casein phosphopeptides. Journal of Proteome Research. 4: 424-34. PMID 15822919 DOI: 10.1021/pr049804u  1
2005 Barnidge DR, Tschumper RC, Jelinek DF, Muddiman DC, Kay NE. Protein expression profiling of CLL B cells using replicate off-line strong cation exchange chromatography and LC-MS/MS. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 819: 33-9. PMID 15797518 DOI: 10.1016/J.Jchromb.2005.01.021  1
2005 Hawkridge AM, Nepomuceno AI, Lovik SL, Mason CJ, Muddiman DC. Effect of post-excitation radius on ion abundance, mass measurement accuracy, and isotopic distributions in Fourier transform ion cyclotron resonance mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 19: 915-8. PMID 15747331 DOI: 10.1002/rcm.1871  1
2005 Kramp KL, DeWitt K, Flora JW, Muddiman DC, Slunt KM, Houston TA. Derivatives of pentamidine designed to target the Leishmania lipophosphoglycan Tetrahedron Letters. 46: 695-698. DOI: 10.1016/J.Tetlet.2004.11.112  1
2004 Johnson KL, Mason CJ, Muddiman DC, Eckel JE. Analysis of the low molecular weight fraction of serum by LC-dual ESI-FT-ICR mass spectrometry: precision of retention time, mass, and ion abundance. Analytical Chemistry. 76: 5097-103. PMID 15373448 DOI: 10.1021/ac0497003  1
2004 Hawkridge AM, Zhou L, Lee ML, Muddiman DC. Analytical performance of a venturi device integrated into an electrospray ionization fourier transform ion cyclotron resonance mass spectrometer for analysis of nucleic acids. Analytical Chemistry. 76: 4118-22. PMID 15253651 DOI: 10.1021/Ac049677L  1
2004 Barnidge DR, Hall GD, Stocker JL, Muddiman DC. Evaluation of a cleavable stable isotope labeled synthetic peptide for absolute protein quantification using LC-MS/MS. Journal of Proteome Research. 3: 658-61. PMID 15253450 DOI: 10.1021/pr034124x  1
2004 Barnidge DR, Goodmanson MK, Klee GG, Muddiman DC. Absolute quantification of the model biomarker prostate-specific antigen in serum by LC-Ms/MS using protein cleavage and isotope dilution mass spectrometry. Journal of Proteome Research. 3: 644-52. PMID 15253448 DOI: 10.1021/pr049963d  1
2004 Bergen HR, Zeldenrust SR, Butz ML, Snow DS, Dyck PJ, Dyck PJ, Klein CJ, O'Brien JF, Thibodeau SN, Muddiman DC. Identification of transthyretin variants by sequential proteomic and genomic analysis. Clinical Chemistry. 50: 1544-52. PMID 15217993 DOI: 10.1373/Clinchem.2004.033266  1
2004 Nepomuceno AI, Mason CJ, Muddiman DC, Bergen HR, Zeldenrust SR. Detection of genetic variants of transthyretin by liquid chromatography-dual electrospray ionization fourier-transform ion-cyclotron-resonance mass spectrometry. Clinical Chemistry. 50: 1535-43. PMID 15205369 DOI: 10.1373/clinchem.2004.033274  1
2004 Bergen HR, Klug MG, Bolander ME, Muddiman DC. Informed use of proteolytic inhibitors in biomarker discovery. Rapid Communications in Mass Spectrometry : Rcm. 18: 1001-2. PMID 15116428 DOI: 10.1002/rcm.1439  1
2004 Johnson KL, Muddiman DC. A method for calculating 16O/18O peptide ion ratios for the relative quantification of proteomes. Journal of the American Society For Mass Spectrometry. 15: 437-45. PMID 15047049 DOI: 10.1016/j.jasms.2003.11.016  1
2004 Huang H, Muddiman DC, Tindall DJ. Androgens negatively regulate forkhead transcription factor FKHR (FOXO1) through a proteolytic mechanism in prostate cancer cells. The Journal of Biological Chemistry. 279: 13866-77. PMID 14726521 DOI: 10.1074/jbc.M314143200  1
2004 Flora JW, Muddiman DC. Determination of the relative energies of activation for the dissociation of aromatic versus aliphatic phosphopeptides by ESI-FTICR-MS and IRMPD. Journal of the American Society For Mass Spectrometry. 15: 121-7. PMID 14698562 DOI: 10.1016/j.jasms.2003.10.004  1
2004 Ovsyannikova IG, Johnson KL, Muddiman DC, Vierkant RA, Poland GA. Identification and characterization of novel, naturally processed measles virus class II HLA-DRB1 peptides. Journal of Virology. 78: 42-51. PMID 14671086 DOI: 10.1128/JVI.78.1.42-51.2004  1
2004 Frahm JL, Mason CJ, Muddiman DC. Utility of accurate monoisotopic mass measurements to confidently identify lambda exonuclease generated single-stranded amplicons containing 7-deaza analogs by electrospray ionization FT-ICR mass spectrometry International Journal of Mass Spectrometry. 234: 79-87. DOI: 10.1016/J.Ijms.2004.02.004  1
2003 Bergen HR, Vasmatzis G, Cliby WA, Johnson KL, Oberg AL, Muddiman DC. Discovery of ovarian cancer biomarkers in serum using NanoLC electrospray ionization TOF and FT-ICR mass spectrometry. Disease Markers. 19: 239-49. PMID 15266667  1
2003 Null AP, Benson LM, Muddiman DC. Enzymatic strategies for the characterization of nucleic acids by electrospray ionization mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 17: 2699-706. PMID 14673816 DOI: 10.1002/rcm.1255  1
2003 Nepomuceno AI, Muddiman DC, Bergen HR, Craighead JR, Burke MJ, Caskey PE, Allan JA. Dual electrospray ionization source for confident generation of accurate mass tags using liquid chromatography Fourier transform ion cyclotron resonance mass spectrometry. Analytical Chemistry. 75: 3411-8. PMID 14570191  0.6
2003 Kryschenko YK, Seidel SR, Muddiman DC, Nepomuceno AI, Stang PJ. Coordination-driven self-assembly of supramolecular cages: heteroatom-containing and complementary trigonal prisms. Journal of the American Chemical Society. 125: 9647-52. PMID 12904031 DOI: 10.1021/Ja030209N  1
2003 Null AP, Muddiman DC. Determination of a correction to improve mass measurement accuracy of isotopically unresolved polymerase chain reaction amplicons by electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 17: 1714-22. PMID 12872276 DOI: 10.1002/rcm.1111  0.01
2003 Bergen HR, Ajtai K, Burghardt TP, Nepomuceno AI, Muddiman DC. Mass spectral determination of skeletal/cardiac actin isoform ratios in cardiac muscle. Rapid Communications in Mass Spectrometry : Rcm. 17: 1467-71. PMID 12820213 DOI: 10.1002/Rcm.1075  0.6
2003 Stringfield TW, Somayajula KV, Muddiman DC, Flora JW, Shepherd RE. 1H NMR and electrospray mass spectrometry of the mono-ionized bis(2,2′-bis(4,5-dimethylimidazole)chloronitrosylruthenium(II) complex ([Ru(NO)Cl(LH2)2]+, LH2=2,2′-bis(4,5-dimethylimidazole) Inorganica Chimica Acta. 343: 317-328. DOI: 10.1016/S0020-1693(02)01243-4  1
2002 Flora JW, Muddiman DC. Gas-phase ion unimolecular dissociation for rapid phosphopeptide mapping by IRMPD in a penning ion trap: An energetically favored process Journal of the American Chemical Society. 124: 6546-6547. PMID 12047170 DOI: 10.1021/ja0261170  1
2002 Mangrum JB, Flora JW, Muddiman DC. Solution composition and thermal denaturation for the production of single-stranded PCR amplicons: piperidine-induced destabilization of the DNA duplex? Journal of the American Society For Mass Spectrometry. 13: 232-40. PMID 11908803 DOI: 10.1016/S1044-0305(01)00356-7  1
2002 Gardella JA, Lytle FE, Muddiman DC. In celebration of the 70th birthday of Dr David M. Hercules Analytical and Bioanalytical Chemistry. 373: 517-518. DOI: 10.1007/S00216-002-1385-9  1
2001 Flora JW, Muddiman DC. Selective, sensitive, and rapid phosphopeptide identification in enzymatic digests using ESI-FTICR-MS with infrared multiphoton dissociation Analytical Chemistry. 73: 3305-3311. PMID 11476230 DOI: 10.1021/ac010333u  1
2001 Flora JW, Muddiman DC. Complete sequencing of mono-deprotonated peptide nucleic acids by sustained off-resonance irradiation collision-induced dissociation Journal of the American Society For Mass Spectrometry. 12: 805-809. PMID 11444602 DOI: 10.1016/S1044-0305(01)00259-8  1
2001 Chen S, Hannis JC, Flora JW, Muddiman DC, Charles K, Yu Y, Povirk LF. Homogeneous preparations of 3'-phosphoglycolate-terminated oligodeoxynucleotides from bleomycin-treated DNA as verified by electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry. Analytical Biochemistry. 289: 274-80. PMID 11161322 DOI: 10.1006/Abio.2000.4936  1
2000 Flora JW, Shillady DD, Muddiman DC. An experimental and theoretical study of the gas-phase decomposition of monoprotonated peptide nucleic acids. Journal of the American Society For Mass Spectrometry. 11: 615-25. PMID 10883817 DOI: 10.1016/S1044-0305(00)00126-4  1
1999 Gordon EF, Mansoori BA, Carroll CF, Muddiman DC. Hydropathic influences on the quantification of equine heart cytochrome c using relative ion abundance measurements by electrospray ionization fourier transform ion cyclotron resonance mass spectrometry. Journal of Mass Spectrometry : Jms. 34: 1055-62. PMID 10510428 DOI: 10.1002/(SICI)1096-9888(199910)34:10<1055::AID-JMS864>3.0.CO;2-E  1
1998 Wunschel DS, Muddiman DC, Fox KF, Fox A, Smith RD. Heterogeneity in Bacillus cereus PCR products detected by ESI-FTICR mass spectrometry. Analytical Chemistry. 70: 1203-7. PMID 9530010 DOI: 10.1021/Ac971156T  1
1997 Muddiman DC, Anderson GA, Hofstadler SA, Smith RD. Length and base composition of PCR-amplified nucleic acids using mass measurements from electrospray ionization mass spectrometry. Analytical Chemistry. 69: 1543-9. PMID 9109353 DOI: 10.1021/Ac961134R  0.6
1997 Manna J, Kuehl CJ, Whiteford JA, Stang PJ, Muddiman DC, Hofstadler SA, Smith RD. Nanoscale tectonics: Self-assembly, characterization, and chemistry of a novel class of organoplatinum square macrocycles Journal of the American Chemical Society. 119: 11611-11619. DOI: 10.1021/Ja972668S  1
1996 Muddiman DC, Cheng X, Udseth HR, Smith RD. Charge-state reduction with improved signal intensity of oligonucleotides in electrospray ionization mass spectrometry. Journal of the American Society For Mass Spectrometry. 7: 697-706. PMID 24203563 DOI: 10.1016/S1044-0305(96)80516-2  0.6
1996 Nicola AJ, Muddiman DC, Hercules DM. Enhancement of ion intensity in time-of-flight secondary-ionization mass spectrometry. Journal of the American Society For Mass Spectrometry. 7: 467-72. PMID 24203401 DOI: 10.1016/1044-0305(96)00006-2  1
1996 Muddiman DC, Wunschel DS, Liu C, Pasa-Tolić L, Fox KF, Fox A, Anderson GA, Smith RD. Characterization of PCR products from bacilli using electrospray ionization FTICR mass spectrometry. Analytical Chemistry. 68: 3705-12. PMID 8914480 DOI: 10.1021/Ac960689J  1
1996 Gusev AI, Muddiman DC, Proctor A, Sharkey AG, Hercules DM, Tata PN, Venkataramanan R. A quantitative study of in vitro hepatic metabolism of tacrolimus (FK506) using secondary ion and matrix-assisted laser desorption/ionization mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 10: 1215-8. PMID 8759330 DOI: 10.1002/(Sici)1097-0231(19960731)10:10<1215::Aid-Rcm647>3.0.Co;2-K  1
1996 Wunschel DS, Fox KF, Fox A, Bruce JE, Muddiman DC, Smith RD. Analysis of double-stranded polymerase chain reaction products from the Bacillus cereus group by electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 10: 29-35. PMID 8563015 DOI: 10.1002/(Sici)1097-0231(19960115)10:1<29::Aid-Rcm430>3.0.Co;2-#  1
1995 Muddiman DC, Gusev AI, Stoppek-Langner K, Proctor A, Hercules DM, Tata P, Venkataramanan R, Diven W. Simultaneous quantification of cyclosporin a and its major metabolites by time-of-flight secondary-ion mass spectrometry and matrix-assisted laser desorption/ionization mass spectrometry utilizing data analysis techniques: Comparison with high-performance liquid chromatography Journal of Mass Spectrometry. 30: 1469-1479. DOI: 10.1002/Jms.1190301013  1
1994 Muddiman DC, Gusev AI, Proctor A, Hercules DM, Venkataramanan R, Diven W. Quantitative measurement of cyclosporin A in blood by time-of-flight mass spectrometry. Analytical Chemistry. 66: 2362-8. PMID 8080109 DOI: 10.1021/ac00086a023  1
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