Joseph D. Szustakowski, Ph.D. - Related publications

Affiliations: 
2003 Boston University, Boston, MA, United States 
Area:
Biomedical Engineering, Computer Science, Molecular Biology
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Li T, Yu L, Song B, Song Y, Li L, Lin X, Lin S. Genome Improvement and Core Gene Set Refinement of . Microorganisms. 8. PMID 31940756 DOI: 10.3390/microorganisms8010102   
2020 Wei S, Wu H, Li X, Chen Y, Yang Y, Dai M, Yin T. Identification of Genes Underlying the Resistance to in an Gene Supercluster of the Genome. Plant Disease. PDIS08191699RE. PMID 32049587 DOI: 10.1094/PDIS-08-19-1699-RE   
2020 Fernández R, Gabaldón T. Gene gain and loss across the metazoan tree of life. Nature Ecology & Evolution. PMID 31988444 DOI: 10.1038/s41559-019-1069-x   
2020 Katsura Y, Nei M. The reproducibility of an inferred tree and the diploidization of gene segregation after genome duplication. Genome Biology and Evolution. PMID 31950994 DOI: 10.1093/gbe/evz272   
2020 Bala M, Sinha R, Mallick MA, Sharma TR, Singh AK. Methods of Gene Expression Profiling to Understand Abiotic Stress Perception and Response in Legume Crops. Methods in Molecular Biology (Clifton, N.J.). 2107: 99-126. PMID 31893444 DOI: 10.1007/978-1-0716-0235-5_5   
2020 Frost HR, Davies MR, Delforge V, Lakhloufi D, Sanderson-Smith M, Srinivasan V, Steer AC, Walker MJ, Beall B, Botteaux A, Smeesters PR. Analysis of Global Collection of Group A Genomes Reveals that the Majority Encode a Trio of M and M-Like Proteins. Msphere. 5. PMID 31915226 DOI: 10.1128/mSphere.00806-19   
2020 Antonazzo G, Urbano JM, Marygold SJ, Millburn GH, Brown NH. Building a pipeline to solicit expert knowledge from the community to aid gene summary curation. Database : the Journal of Biological Databases and Curation. 2020. PMID 31960022 DOI: 10.1093/database/baz152   
2020 Zhang Z, Jia Y, Wang Y, Sun G. A Rapid Survey of Avirulence Genes in Field Isolates of . Plant Disease. PDIS08191688RE. PMID 31935345 DOI: 10.1094/PDIS-08-19-1688-RE   
2020 Hao Y, Lee HJ, Baraboo M, Burch K, Maurer T, Somarelli JA, Conant GC. Baby genomics: tracing the evolutionary changes that gave rise to placentation. Genome Biology and Evolution. PMID 32053193 DOI: 10.1093/gbe/evaa026   
2020 Badet T, Oggenfuss U, Abraham L, McDonald BA, Croll D. A 19-isolate reference-quality global pangenome for the fungal wheat pathogen Zymoseptoria tritici. Bmc Biology. 18: 12. PMID 32046716 DOI: 10.1186/s12915-020-0744-3   
2020 Read AC, Moscou MJ, Zimin AV, Pertea G, Meyer RS, Purugganan MD, Leach JE, Triplett LR, Salzberg SL, Bogdanove AJ. Genome assembly and characterization of a complex zfBED-NLR gene-containing disease resistance locus in Carolina Gold Select rice with Nanopore sequencing. Plos Genetics. 16: e1008571. PMID 31986137 DOI: 10.1371/journal.pgen.1008571   
2020 Kabadi A, McDonnell E, Frank CL, Drowley L. Applications of Functional Genomics for Drug Discovery. Slas Discovery : Advancing Life Sciences R & D. 2472555220902092. PMID 32026742 DOI: 10.1177/2472555220902092   
2020 Komori T, Sun Y, Kashihara M, Uekawa N, Kato N, Usami S, Ishikawa N, Hiei Y, Kobayashi K, Kum R, Bortiri E, White K, Oeller P, Takemori N, Bate NJ, et al. High-throughput phenotypic screening of random genomic fragments in transgenic rice identified novel drought tolerance genes. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 31980835 DOI: 10.1007/s00122-020-03548-6   
2020 Rasheed A, Takumi S, Hassan MA, Imtiaz M, Ali M, Morgunov AI, Mahmood T, He Z. Appraisal of wheat genomics for gene discovery and breeding applications: a special emphasis on advances in Asia. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 31897516 DOI: 10.1007/s00122-019-03523-w   
2020 Saroj DB, Gupta AK. Genome based safety assessment for Bacillus coagulans strain LBSC (DSM 17654) for probiotic application. International Journal of Food Microbiology. 108523. PMID 31964505 DOI: 10.1016/j.ijfoodmicro.2020.108523   
2020 Min B, Yoon H, Park J, Oh YL, Kong WS, Kim JG, Choi IG. Unusual genome expansion and transcription suppression in ectomycorrhizal Tricholoma matsutake by insertions of transposable elements. Plos One. 15: e0227923. PMID 31978083 DOI: 10.1371/journal.pone.0227923   
2020 Ely B. Recombination and gene loss occur simultaneously during bacterial horizontal gene transfer. Plos One. 15: e0227987. PMID 31990919 DOI: 10.1371/journal.pone.0227987   
2020 Nagy LG, Merényi Z, Hegedüs B, Bálint B. Novel phylogenetic methods are needed for understanding gene function in the era of mega-scale genome sequencing. Nucleic Acids Research. PMID 31943056 DOI: 10.1093/nar/gkz1241   
2020 Mizuno H, Katagiri S, Kanamori H, Mukai Y, Sasaki T, Matsumoto T, Wu J. Evolutionary dynamics and impacts of chromosome regions carrying R-gene clusters in rice. Scientific Reports. 10: 872. PMID 31964985 DOI: 10.1038/s41598-020-57729-w   
2020 Vu HT, Tran N, Nguyen TD, Vu QL, Bui MH, Le MT, Le L. Complete Chloroplast Genome of and Phylogenetic Relationships among Orchidaceae. Plants (Basel, Switzerland). 9. PMID 31906501 DOI: 10.3390/plants9010061   
2020 Wang Y, Wang GD, He QL, Luo ZP, Yang L, Yao Q, Chen KP. Phylogenetic analysis of achaete-scute complex genes in metazoans. Molecular Genetics and Genomics : Mgg. PMID 32006176 DOI: 10.1007/s00438-020-01648-y   
2020 Borys SM, Younger ST. Identification of functional regulatory elements in the human genome using pooled CRISPR screens. Bmc Genomics. 21: 107. PMID 32005150 DOI: 10.1186/s12864-020-6497-0   
2020 Singh U, Syrkin Wurtele E. How new genes are born. Elife. 9. PMID 32072921 DOI: 10.7554/eLife.55136   
2020 Zhang J, Kan X, Miao G, Hu S, Sun Q, Tian W. qMGR: a new approach for quantifying mitochondrial genome rearrangement. Mitochondrion. PMID 32045715 DOI: 10.1016/j.mito.2020.02.004   
2020 Zhang L, Xu Y, Zhang X, Ma X, Zhang L, Liao Z, Zhang Q, Wan X, Cheng Y, Zhang J, Li D, Zhang L, Xu J, Tao A, Lin L, et al. The genome of kenaf (Hibiscus cannabinus L.) provides insights into bast fiber and leaf shape biogenesis. Plant Biotechnology Journal. PMID 31975524 DOI: 10.1111/pbi.13341   
2020 Lu YP, Liao JH, Guo ZJ, Cai ZX, Chen MY. Genome Survey and Transcriptome Analysis on Mycelia and Primordia of . Biomed Research International. 2020: 1824183. PMID 32025516 DOI: 10.1155/2020/1824183   
2020 Wang L, Luo Y, Zhao Y, Gao GF, Bi Y, Qiu HJ. Comparative genomic analysis reveals an "open" pan-genome of African swine fever virus. Transboundary and Emerging Diseases. PMID 31965706 DOI: 10.1111/tbed.13489   
2020 Varshney RK, Sinha P, Singh VK, Kumar A, Zhang Q, Bennetzen JL. 5Gs for crop genetic improvement. Current Opinion in Plant Biology. PMID 32005553 DOI: 10.1016/j.pbi.2019.12.004   
2020 Huang S, Ge X, Cano A, Salazar BGM, Deng Y. Comparative analysis of chloroplast genomes for five species (Acanthaceae): molecular structure, phylogenetic relationships, and adaptive evolution. Peerj. 8: e8450. PMID 32071806 DOI: 10.7717/peerj.8450   
2020 Wei D, Xu HQ, Chen D, Zhang SY, Li WJ, Smagghe G, Wang JJ. Genome-wide gene expression profiling of the melon fly, Zeugodacus cucurbitae, during thirteen life stages. Scientific Data. 7: 45. PMID 32047161 DOI: 10.1038/s41597-020-0387-9   
2020 Sundaram V, Wysocka J. Transposable elements as a potent source of diverse -regulatory sequences in mammalian genomes. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 375: 20190347. PMID 32075564 DOI: 10.1098/rstb.2019.0347   
2020 Wu Y, Yang H, Feng Z, Li B, Zhou W, Song F, Li H, Zhang L, Cai W. Novel gene rearrangement in the mitochondrial genome of Pachyneuron aphidis (Hymenoptera: Pteromalidae). International Journal of Biological Macromolecules. PMID 32018006 DOI: 10.1016/j.ijbiomac.2020.01.308   
2020 Wu Y, Yang H, Feng Z, Li B, Zhou W, Song F, Li H, Zhang L, Cai W. Novel gene rearrangement in the mitochondrial genome of Pachyneuron aphidis (Hymenoptera: Pteromalidae). International Journal of Biological Macromolecules. PMID 32018006 DOI: 10.1016/j.ijbiomac.2020.01.308   
2020 Coate JE, Schreyer WM, Kum D, Doyle JJ. Robust Cytonuclear Coordination of Transcription in Nascent Autopolyploids. Genes. 11. PMID 32012851 DOI: 10.3390/genes11020134   
2020 Dolby GA, Morales M, Webster TH, DeNardo DF, Wilson MA, Kusumi K. Discovery of a new TLR gene and gene expansion event through improved desert tortoise genome assembly with chromosome-scale scaffolds. Genome Biology and Evolution. PMID 32011707 DOI: 10.1093/gbe/evaa016   
2020 C Silva M, Chibucos M, Munro JB, Daugherty S, Coelho MM, C Silva J. Signature of adaptive evolution in olfactory receptor genes in Cory's Shearwater supports molecular basis for smell in procellariiform seabirds. Scientific Reports. 10: 543. PMID 31953474 DOI: 10.1038/s41598-019-56950-6   
2020 Bao W, Tang KFJ, Alcivar-Warren A. The Complete Genome of an Endogenous Nimavirus () From the Pacific Whiteleg Shrimp () . Genes. 11. PMID 31947590 DOI: 10.3390/genes11010094   
2020 Zhang N, Chen S, Jiang G, Wu Y, Shao J, Liu W, Wang X, Na R, Xu J. The study on copy number alteration of clear cell renal cancer in Chinese population. Journal of Cancer. 11: 16-24. PMID 31892969 DOI: 10.7150/jca.33316   
2020 Ding P, Ngou BPM, Furzer OJ, Sakai T, Shrestha RK, MacLean D, Jones JDG. High-resolution Expression Profiling of Selected Gene Sets during Plant Immune Activation. Plant Biotechnology Journal. PMID 31916350 DOI: 10.1111/pbi.13327   
2020 Chen G, Song W, Ying X. Horizontal Gene Transfer of Short-Chain Dehydrogenase Coding Genes Contribute to the Biofilm Formation and Pathogenicity on Mycobacterium grossiae sp. nov. PB739 (=DSM 104744). Current Microbiology. PMID 31907602 DOI: 10.1007/s00284-019-01832-3   
2020 Liu K, Sun B, You H, Tu JL, Yu X, Zhao P, Xu JW. Dual sgRNA-directed gene deletion in basidiomycete Ganoderma lucidum using the CRISPR/Cas9 system. Microbial Biotechnology. PMID 31958883 DOI: 10.1111/1751-7915.13534   
2020 Wang L, He N, Li Y, Fang Y, Zhang F. Complete Chloroplast Genome Sequence of Chinese Lacquer Tree (, Anacardiaceae) and Its Phylogenetic Significance. Biomed Research International. 2020: 9014873. PMID 32071921 DOI: 10.1155/2020/9014873   
2020 Yin Y, Yang T, Liu H, Huang Z, Zhang Y, Song Y, Wang W, Guang X, Sahu SK, Kristiansen K. The draft genome of mandrill (Mandrillus sphinx): An Old World monkey. Scientific Reports. 10: 2431. PMID 32051450 DOI: 10.1038/s41598-020-59110-3   
2020 Suryamohan K, Krishnankutty SP, Guillory J, Jevit M, Schröder MS, Wu M, Kuriakose B, Mathew OK, Perumal RC, Koludarov I, Goldstein LD, Senger K, Dixon MD, Velayutham D, Vargas D, et al. The Indian cobra reference genome and transcriptome enables comprehensive identification of venom toxins. Nature Genetics. PMID 31907489 DOI: 10.1038/s41588-019-0559-8   
2020 He H, Li W, Comiskey DF, Liyanarachchi S, Nieminen TT, Wang Y, DeLap KE, Brock P, de la Chapelle A. A truncating germline mutation of TINF2 in individuals with thyroid cancer or melanoma results in longer telomeres. Thyroid : Official Journal of the American Thyroid Association. PMID 31928178 DOI: 10.1089/thy.2019.0156   
2020 Yagoubat A, Crobu L, Berry L, Kuk N, Lefebvre M, Sarrazin A, Bastien P, Sterkers Y. Universal highly efficient conditional knockout system in Leishmania, with a focus on UTR preservation. Cellular Microbiology. e13159. PMID 31909863 DOI: 10.1111/cmi.13159   
2020 Spoto M, Guan C, Fleming E, Oh J. A Universal, Genomewide GuideFinder for CRISPR/Cas9 Targeting in Microbial Genomes. Msphere. 5. PMID 32051236 DOI: 10.1128/mSphere.00086-20   
2020 Kumar V, Tyagi K, Chakraborty R, Prasad P, Kundu S, Tyagi I, Chandra K. The Complete Mitochondrial Genome of endemic giant tarantula, Lyrognathus crotalus (Araneae: Theraphosidae) and comparative analysis. Scientific Reports. 10: 74. PMID 31919395 DOI: 10.1038/s41598-019-57065-8   
2020 Moisander PH, Ochiai M. Draft Genome Sequence of the Non-Microcystin-Producing Microcystis aeruginosa Strain KLA2, Isolated from a Freshwater Reservoir in Northern California, USA. Microbiology Resource Announcements. 9. PMID 31948955 DOI: 10.1128/MRA.01086-19   
2020 Moore JE, Pratt HE, Purcaro MJ, Weng Z. A curated benchmark of enhancer-gene interactions for evaluating enhancer-target gene prediction methods. Genome Biology. 21: 17. PMID 31969180 DOI: 10.1186/s13059-019-1924-8