Hennady P. Shulha, Ph.D. - Publications

Affiliations: 
2011 Boston University, Boston, MA, United States 
Area:
Biomedical Engineering, Bioinformatics Biology, Neurobiology Biology

16/42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Chen W, Moore J, Ozadam H, Shulha HP, Rhind N, Weng Z, Moore MJ. Transcriptome-wide Interrogation of the Functional Intronome by Spliceosome Profiling. Cell. 173: 1031-1044.e13. PMID 29727662 DOI: 10.1016/J.Cell.2018.03.062  0.542
2015 Shea JM, Serra RW, Carone BR, Shulha HP, Kucukural A, Ziller MJ, Vallaster MP, Gu H, Tapper AR, Gardner PD, Meissner A, Garber M, Rando OJ. Genetic and Epigenetic Variation, but Not Diet, Shape the Sperm Methylome. Developmental Cell. 35: 750-8. PMID 26702833 DOI: 10.1016/J.Devcel.2015.11.024  0.381
2015 Bai G, Cheung I, Shulha HP, Coelho JE, Li P, Dong X, Jakovcevski M, Wang Y, Grigorenko A, Jiang Y, Hoss A, Patel K, Zheng M, Rogaev E, Myers RH, et al. Epigenetic dysregulation of hairy and enhancer of split 4 (HES4) is associated with striatal degeneration in postmortem Huntington brains. Human Molecular Genetics. 24: 1441-56. PMID 25480889 DOI: 10.1093/Hmg/Ddu561  0.745
2014 Shen E, Shulha H, Weng Z, Akbarian S. Regulation of histone H3K4 methylation in brain development and disease. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 369. PMID 25135975 DOI: 10.1098/Rstb.2013.0514  0.594
2014 Chen W, Shulha HP, Ashar-Patel A, Yan J, Green KM, Query CC, Rhind N, Weng Z, Moore MJ. Endogenous U2·U5·U6 snRNA complexes in S. pombe are intron lariat spliceosomes. Rna (New York, N.Y.). 20: 308-20. PMID 24442611 DOI: 10.1261/Rna.040980.113  0.467
2013 Pierce BG, Eberwine R, Noble JA, Habib M, Shulha HP, Weng Z, Blankenhorn EP, Mordes JP. The Missing Heritability in T1D and Potential New Targets for Prevention. Journal of Diabetes Research. 2013: 737485. PMID 23691517 DOI: 10.1155/2013/737485  0.654
2013 Shulha HP, Cheung I, Guo Y, Akbarian S, Weng Z. Coordinated cell type-specific epigenetic remodeling in prefrontal cortex begins before birth and continues into early adulthood. Plos Genetics. 9: e1003433. PMID 23593028 DOI: 10.1371/Journal.Pgen.1003433  0.594
2012 Shulha HP, Crisci JL, Reshetov D, Tushir JS, Cheung I, Bharadwaj R, Chou HJ, Houston IB, Peter CJ, Mitchell AC, Yao WD, Myers RH, Chen JF, Preuss TM, Rogaev EI, et al. Human-specific histone methylation signatures at transcription start sites in prefrontal neurons. Plos Biology. 10: e1001427. PMID 23185133 DOI: 10.1371/Journal.Pbio.1001427  0.643
2012 Shulha HP, Cheung I, Whittle C, Wang J, Virgil D, Lin CL, Guo Y, Lessard A, Akbarian S, Weng Z. Epigenetic signatures of autism: trimethylated H3K4 landscapes in prefrontal neurons. Archives of General Psychiatry. 69: 314-24. PMID 22065254 DOI: 10.1001/Archgenpsychiatry.2011.151  0.478
2010 Landolin JM, Johnson DS, Trinklein ND, Aldred SF, Medina C, Shulha H, Weng Z, Myers RM. Sequence features that drive human promoter function and tissue specificity. Genome Research. 20: 890-8. PMID 20501695 DOI: 10.1101/Gr.100370.109  0.728
2010 Cheung I, Shulha HP, Jiang Y, Matevossian A, Wang J, Weng Z, Akbarian S. Developmental regulation and individual differences of neuronal H3K4me3 epigenomes in the prefrontal cortex. Proceedings of the National Academy of Sciences of the United States of America. 107: 8824-9. PMID 20421462 DOI: 10.1073/Pnas.1001702107  0.606
2008 Johnson DS, Li W, Gordon DB, Bhattacharjee A, Curry B, Ghosh J, Brizuela L, Carroll JS, Brown M, Flicek P, Koch CM, Dunham I, Bieda M, Xu X, Farnham PJ, ... ... Shulha HP, et al. Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets. Genome Research. 18: 393-403. PMID 18258921 DOI: 10.1101/Gr.7080508  0.719
2008 Boyle AP, Davis S, Shulha HP, Meltzer P, Margulies EH, Weng Z, Furey TS, Crawford GE. High-resolution mapping and characterization of open chromatin across the genome. Cell. 132: 311-22. PMID 18243105 DOI: 10.1016/J.Cell.2007.12.014  0.67
2008 Zhang X, Guo C, Chen Y, Shulha HP, Schnetz MP, LaFramboise T, Bartels CF, Markowitz S, Weng Z, Scacheri PC, Wang Z. Epitope tagging of endogenous proteins for genome-wide ChIP-chip studies. Nature Methods. 5: 163-5. PMID 18176569 DOI: 10.1038/Nmeth1170  0.61
2007 Xi H, Shulha HP, Lin JM, Vales TR, Fu Y, Bodine DM, McKay RD, Chenoweth JG, Tesar PJ, Furey TS, Ren B, Weng Z, Crawford GE. Identification and characterization of cell type-specific and ubiquitous chromatin regulatory structures in the human genome. Plos Genetics. 3: e136. PMID 17708682 DOI: 10.1371/Journal.Pgen.0030136  0.718
2007 Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE, Kuehn MS, Taylor CM, Neph S, Koch CM, ... ... Shulha HP, et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature. 447: 799-816. PMID 17571346 DOI: 10.1038/Nature05874  0.633
Low-probability matches (unlikely to be authored by this person)
2014 Vernia S, Cavanagh-Kyros J, Garcia-Haro L, Sabio G, Barrett T, Jung DY, Kim JK, Xu J, Shulha HP, Garber M, Gao G, Davis RJ. The PPARα-FGF21 hormone axis contributes to metabolic regulation by the hepatic JNK signaling pathway. Cell Metabolism. 20: 512-25. PMID 25043817 DOI: 10.1016/J.Cmet.2014.06.010  0.257
2018 Hung SS, Meissner B, Chavez EA, Ben-Neriah S, Ennishi D, Jones MR, Shulha HP, Chan FC, Boyle M, Kridel R, Gascoyne RD, Mungall AJ, Marra MA, Scott DW, Connors JM, et al. Assessment of Capture and Amplicon-Based Approaches for the Development of a Targeted Next-Generation Sequencing Pipeline to Personalize Lymphoma Management. The Journal of Molecular Diagnostics : Jmd. PMID 29429887 DOI: 10.1016/J.Jmoldx.2017.11.010  0.235
2014 Ennishi D, Hoffer C, Shulha H, Mottok A, Farinha P, Chan FC, Meissner B, Boyle M, Ben-Neriah S, Morin RD, Marra MA, Savage KJ, Sehn LH, Connors JM, Steidl C, et al. Clinical Significance of Genetic Aberrations in Diffuse Large B Cell Lymphoma Blood. 124: 703-703. DOI: 10.1182/Blood.V124.21.703.703  0.201
2020 Ennishi D, Healy S, Bashashati A, Saberi S, Hother C, Mottok A, Chan FC, Chong L, Abraham L, Kridel R, Boyle M, Meissner B, Aoki T, Takata K, Woolcock BW, ... ... Shulha HP, et al. TMEM30A loss-of-function mutations drive lymphomagenesis and confer therapeutically exploitable vulnerability in B-cell lymphoma. Nature Medicine. PMID 32094924 DOI: 10.1038/S41591-020-0757-Z  0.189
2017 Ennishi D, Mottok A, Ben-Neriah S, Shulha HP, Farinha P, Chan FC, Meissner B, Boyle M, Hother C, Kridel R, Lai D, Saberi S, Bashashati A, Shah SP, Morin RD, et al. Genetic profiling of MYC and BCL2 in diffuse large B-cell lymphoma determines cell of origin-specific clinical impact. Blood. PMID 28351934 DOI: 10.1182/Blood-2016-11-747022  0.188
2015 Ennishi D, Mottok A, Savage KJ, Ben-Neriah S, Shulha H, Farinha P, Chan FC, Meissner B, Boyle M, Hother CE, Kridel R, Morin R, Marra MA, Sehn LH, Steidl C, et al. Comprehensive MYC and BCL2 Genetic Profiling in De Novo Diffuse Large B-Cell Lymphoma Demonstrates Clinically Relevant Genetic Alterations According to Cell of Origin Subtype Blood. 126: 109-109. DOI: 10.1182/Blood.V126.23.109.109  0.184
2015 Ennishi D, Mottok A, Shulha H, Farinha P, Chan FC, Meissner B, Boyle M, Ben-Neriah S, Hother CE, Kridel R, Morin R, Marra MA, Savage KJ, Sehn LH, Connors JM, et al. Genetic Alterations of Gα13 Signaling Pathway with BCL2 over-Expression Confers Lymphoma Dissemination and Inferior Outcome in Germinal Center B Cell Diffuse Large B Cell Lymphoma Blood. 126: 111-111. DOI: 10.1182/Blood.V126.23.111.111  0.18
2018 Viganò E, Gunawardana J, Mottok A, Van Tol T, Mak K, Chan FC, Chong L, Chavez E, Woolcock B, Takata K, Twa D, Shulha HP, Telenius A, Kutovaya O, Hung SS, et al. Somatic IL4R Mutations in Primary Mediastinal Large B-cell lymphoma lead to constitutive JAK-STAT signaling activation. Blood. PMID 29467182 DOI: 10.1182/blood-2017-09-808907  0.172
2015 Kridel R, Mottok A, Farinha P, Ben-Neriah S, Ennishi D, Zheng Y, Chavez EA, Shulha HP, Tan K, Chan FC, Boyle M, Meissner B, Telenius A, Sehn LH, Marra MA, et al. Cell-of-origin of transformed follicular lymphoma. Blood. PMID 26307535 DOI: 10.1182/Blood-2015-06-649905  0.126
2015 Pastore A, Jurinovic V, Kridel R, Hoster E, Staiger AM, Szczepanowski M, Pott C, Kopp N, Murakami M, Horn H, Leich E, Moccia AA, Mottok A, Sunkavalli A, Van Hummelen P, ... ... Shulha HP, et al. Integration of gene mutations in risk prognostication for patients receiving first-line immunochemotherapy for follicular lymphoma: a retrospective analysis of a prospective clinical trial and validation in a population-based registry. The Lancet. Oncology. PMID 26256760 DOI: 10.1016/S1470-2045(15)00169-2  0.089
2020 Puyat JH, Shulha HP, Balshaw R, Campbell JR, Law S, Menzies R, Johnston J. How well does TSTin3D predict risk of active tuberculosis in the Canadian immigrant population? An External Validation Study. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 32556316 DOI: 10.1093/cid/ciaa780  0.084
2019 Goldman-Hasbun J, Kerr T, Nosova E, Shulha H, Wood E, DeBeck K. Initiation into heroin use among street-involved youth in a Canadian setting: A longitudinal cohort study. Drug and Alcohol Dependence. 205: 107579. PMID 31600619 DOI: 10.1016/j.drugalcdep.2019.107579  0.065
2019 Scheim A, Knight R, Shulha H, Nosova E, Hayashi K, Milloy MJ, Kerr T, DeBeck K. Characterizing Men Who Have Sex with Men and Use Injection Drugs in Vancouver, Canada. Aids and Behavior. PMID 31327107 DOI: 10.1007/s10461-019-02605-6  0.061
2021 Yan M, Puyat JH, Shulha HP, Clark EG, Levin A, Johnston JC. Risk of tuberculosis associated with chronic kidney disease: a population-based analysis. Nephrology, Dialysis, Transplantation : Official Publication of the European Dialysis and Transplant Association - European Renal Association. PMID 34260735 DOI: 10.1093/ndt/gfab222  0.056
2024 Silverberg SL, Shulha HP, McMillan B, He G, Lee A, Márquez AC, Bartlett SR, Gill V, Abu-Raya B, Bettinger JA, Cabrera A, Coombs D, Gantt S, Goldfarb DM, Sauvé L, et al. Factors associated with SARS-CoV-2 infection in unvaccinated children and young adults. Bmc Infectious Diseases. 24: 91. PMID 38225625 DOI: 10.1186/s12879-023-08950-1  0.056
2018 Socías ME, Wood E, Lake S, Nolan S, Fairbairn N, Hayashi K, Shulha HP, Liu S, Kerr T, Milloy MJ. High-intensity cannabis use is associated with retention in opioid agonist treatment: a longitudinal analysis. Addiction (Abingdon, England). PMID 30238568 DOI: 10.1111/add.14398  0.053
2021 Kumar DS, Ronald LA, Romanowski K, Rose C, Shulha HP, Cook VJ, Johnston JC. Risk of active tuberculosis in migrants diagnosed with cancer: a retrospective cohort study in British Columbia, Canada. Bmj Open. 11: e037827. PMID 33653739 DOI: 10.1136/bmjopen-2020-037827  0.05
2022 Silverberg SL, Zhang BY, Li SNJ, Burgert C, Shulha HP, Kitchin V, Sauvé L, Sadarangani M. Child transmission of SARS-CoV-2: a systematic review and meta-analysis. Bmc Pediatrics. 22: 172. PMID 35365104 DOI: 10.1186/s12887-022-03175-8  0.049
2005 Lin YH, Teng J, Zubarev ER, Shulha H, Tsukruk VV. In-situ observation of switchable nanoscale topography for y-shaped binary brushes in fluids. Nano Letters. 5: 491-5. PMID 15755100 DOI: 10.1021/Nl0479029  0.035
2019 Prangnell A, Voon P, Shulha H, Nosova E, Shoveller J, Milloy MJ, Kerr T, Hayashi K. The relationship between childhood emotional abuse and chronic pain among people who inject drugs in Vancouver, Canada. Child Abuse & Neglect. 93: 119-127. PMID 31103834 DOI: 10.1016/j.chiabu.2019.05.006  0.027
2020 Prangnell A, Shoveller J, Voon P, Shulha H, Grant C, Milloy MJ, Kerr T, Hayashi K. The Impact of Childhood Emotional Abuse on Pain Interference Among People with Chronic Pain who Inject Drugs in Vancouver, Canada. Pain Medicine (Malden, Mass.). 21: 704-713. PMID 32266945 DOI: 10.1093/pm/pnz233  0.026
2022 Bettinger JA, Irvine MA, Shulha HP, Valiquette L, Muller MP, Vanderkooi OG, Kellner JD, Top KA, Sadarangani M, McGeer A, Isenor JE, Marty K, Soe P, De Serres G. Adverse Events Following Immunization with mRNA and Viral Vector Vaccines in Individuals with Previous SARS-CoV-2 Infection from the Canadian National Vaccine Safety Network. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 36310514 DOI: 10.1093/cid/ciac852  0.021
2021 Parmar GS, Hayashi K, Nolan S, Milloy MJ, DeBeck K, Shulha HP, Kerr T, Ti L. Non-medical prescription opioid use and in-hospital illicit drug use among people who use drugs. Drug and Alcohol Review. PMID 33543535 DOI: 10.1111/dar.13246  0.02
2019 Ng M, Hayashi K, Voon P, Shulha HP, DeBeck K, Milloy MJ, Ti L. Characterising the association between positive hepatitis C virus antibody and pain among people who inject drugs. Drug and Alcohol Review. PMID 31418953 DOI: 10.1111/dar.12969  0.019
2023 Le Saux N, Bettinger J, Shulha HP, Sadarangani M, Coyle D, Booth TF, Jadavji T, Halperin SA. The success of publicly funded rotavirus vaccine programs for preventing community- and hospital-acquired rotavirus infections in Canadian pediatric hospitals: an observational study. Cmaj Open. 11: E1156-E1163. PMID 38114258 DOI: 10.9778/cmajo.20220245  0.01
2022 Sadarangani M, Soe P, Shulha HP, Valiquette L, Vanderkooi OG, Kellner JD, Muller MP, Top KA, Isenor JE, McGeer A, Irvine M, De Serres G, Marty K, Bettinger JA. Safety of COVID-19 vaccines in pregnancy: a Canadian National Vaccine Safety (CANVAS) network cohort study. The Lancet. Infectious Diseases. PMID 35964614 DOI: 10.1016/S1473-3099(22)00426-1  0.01
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