cached image

Jarrod A. Marto - Publications

Biological Chemistry and Molecular Pharmacology Harvard Medical School, Boston, MA, United States 

160 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Fu A, Alvarez-Perez JC, Avizonis D, Kin T, Ficarro SB, Choi DW, Karakose E, Badur MG, Evans L, Rosselot C, Bridon G, Bird GH, Seo HS, Dhe-Paganon S, Kamphorst JJ, ... ... Marto JA, et al. Glucose-dependent partitioning of arginine to the urea cycle protects β-cells from inflammation. Nature Metabolism. 2: 432-446. PMID 32694660 DOI: 10.1038/s42255-020-0199-4  0.56
2020 Teng M, Ficarro SB, Yoon H, Che J, Zhou J, Fischer ES, Marto JA, Zhang T, Gray NS. Rationally Designed Covalent BCL6 Inhibitor That Targets a Tyrosine Residue in the Homodimer Interface. Acs Medicinal Chemistry Letters. 11: 1269-1273. PMID 32551010 DOI: 10.1021/acsmedchemlett.0c00111  0.56
2020 Liu Y, Hao M, Leggett A, Gao Y, Ficarro SB, Che J, He Z, Olson C, Marto JA, Kwiatkowski N, Zhang T, Gray NS. Discovery of MFH290: A Potent and Highly Selective Covalent Inhibitor for Cyclin-Dependent Kinase 12/13. Journal of Medicinal Chemistry. PMID 32502343 DOI: 10.1021/acs.jmedchem.9b01929  0.56
2020 Pinch BJ, Doctor ZM, Nabet B, Browne CM, Seo HS, Mohardt ML, Kozono S, Lian X, Manz TD, Chun Y, Kibe S, Zaidman D, Daitchman D, Yeoh ZC, Vangos NE, ... ... Marto JA, et al. Identification of a potent and selective covalent Pin1 inhibitor. Nature Chemical Biology. PMID 32483379 DOI: 10.1038/s41589-020-0550-9  0.56
2020 Manz TD, Sivakumaren SC, Ferguson FM, Zhang T, Yasgar A, Seo HS, Ficarro SB, Card JD, Shim H, Miduturu CV, Simeonov A, Shen M, Marto JA, Dhe-Paganon S, Hall MD, et al. Discovery and Structure-Activity Relationship Study of (Z)-5-Methylenethiazolidin-4-one Derivatives as Potent and Selective Pan-phosphatidylinositol 5-Phosphate 4-Kinase Inhibitors. Journal of Medicinal Chemistry. PMID 32298120 DOI: 10.1021/acs.jmedchem.0c00227  0.56
2020 Schauer NJ, Liu X, Magin RS, Doherty LM, Chan WC, Ficarro SB, Hu W, Roberts RM, Iacob RE, Stolte B, Giacomelli AO, Perera S, McKay K, Boswell SA, Weisberg EL, ... ... Marto JA, et al. Selective USP7 inhibition elicits cancer cell killing through a p53-dependent mechanism. Scientific Reports. 10: 5324. PMID 32210275 DOI: 10.1038/s41598-020-62076-x  0.56
2020 Manz TD, Sivakumaren SC, Yasgar A, Hall MD, Davis MI, Seo HS, Card JD, Ficarro SB, Shim H, Marto JA, Dhe-Paganon S, Sasaki AT, Boxer MB, Simeonov A, Cantley LC, et al. Structure-Activity Relationship Study of Covalent Pan-phosphatidylinositol 5-Phosphate 4-Kinase Inhibitors. Acs Medicinal Chemistry Letters. 11: 346-352. PMID 32184968 DOI: 10.1021/acsmedchemlett.9b00402  0.56
2020 Sivakumaren SC, Shim H, Zhang T, Ferguson FM, Lundquist MR, Browne CM, Seo HS, Paddock MN, Manz TD, Jiang B, Hao MF, Krishnan P, Wang DG, Yang TJ, Kwiatkowski NP, ... ... Marto JA, et al. Targeting the PI5P4K Lipid Kinase Family in Cancer Using Covalent Inhibitors. Cell Chemical Biology. PMID 32130941 DOI: 10.1016/j.chembiol.2020.02.003  0.56
2020 Adhikari AA, Seegar TCM, Ficarro SB, McCurry MD, Ramachandran D, Yao L, Chaudhari SN, Ndousse-Fetter S, Banks AS, Marto JA, Blacklow SC, Devlin AS. Development of a covalent inhibitor of gut bacterial bile salt hydrolases. Nature Chemical Biology. PMID 32042200 DOI: 10.1038/s41589-020-0467-3  0.56
2020 Kurppa KJ, Liu Y, To C, Zhang T, Fan M, Vajdi A, Knelson EH, Xie Y, Lim K, Cejas P, Portell A, Lizotte PH, Ficarro SB, Li S, Chen T, ... ... Marto JA, et al. Treatment-Induced Tumor Dormancy through YAP-Mediated Transcriptional Reprogramming of the Apoptotic Pathway. Cancer Cell. 37: 104-122.e12. PMID 31935369 DOI: 10.1016/j.ccell.2019.12.006  0.56
2020 Du G, Rao S, Gurbani D, Henning NJ, Jiang J, Che J, Yang A, Ficarro SB, Marto JA, Aguirre AJ, Sorger PK, Westover KD, Zhang T, Gray NS. Structure-based design of a potent and selective covalent inhibitor for SRC kinase that targets a p-Loop cysteine. Journal of Medicinal Chemistry. PMID 31935084 DOI: 10.1021/acs.jmedchem.9b01502  0.56
2020 Clairmont CS, Sarangi P, Ponnienselvan K, Galli LD, Csete I, Moreau L, Adelmant G, Chowdhury D, Marto JA, D'Andrea AD. TRIP13 regulates DNA repair pathway choice through REV7 conformational change. Nature Cell Biology. 22: 87-96. PMID 31915374 DOI: 10.1038/s41556-019-0442-y  0.52
2020 Kim JW, Berrios C, Kim M, Schade AE, Adelmant G, Yeerna H, Damato E, Iniguez AB, Florens L, Washburn MP, Stegmaier K, Gray NS, Tamayo P, Gjoerup O, Marto JA, et al. STRIPAK directs PP2A activity toward MAP4K4 to promote oncogenic transformation of human cells. Elife. 9. PMID 31913126 DOI: 10.7554/eLife.53003  0.52
2019 Jarrett SM, Seegar TCM, Andrews M, Adelmant G, Marto JA, Aster JC, Blacklow SC. Extension of the Notch intracellular domain ankyrin repeat stack by NRARP promotes feedback inhibition of Notch signaling. Science Signaling. 12. PMID 31690634 DOI: 10.1126/scisignal.aay2369  0.52
2019 Park E, Rawson S, Li K, Kim BW, Ficarro SB, Pino GG, Sharif H, Marto JA, Jeon H, Eck MJ. Architecture of autoinhibited and active BRAF-MEK1-14-3-3 complexes. Nature. PMID 31581174 DOI: 10.1038/s41586-019-1660-y  0.56
2019 Zheng XF, Acharya SS, Choe KN, Nikhil K, Adelmant G, Satapathy SR, Sharma S, Viccaro K, Rana S, Natarajan A, Sicinski P, Marto JA, Shah K, Chowdhury D. A mitotic CDK5-PP4 phospho-signaling cascade primes 53BP1 for DNA repair in G1. Nature Communications. 10: 4252. PMID 31534152 DOI: 10.1038/s41467-019-12084-x  0.52
2019 Twomey EC, Ji Z, Wales TE, Bodnar NO, Ficarro SB, Marto JA, Engen JR, Rapoport TA. Substrate processing by the Cdc48 ATPase complex is initiated by ubiquitin unfolding. Science (New York, N.Y.). PMID 31249135 DOI: 10.1126/science.aax1033  0.56
2019 Ferguson FM, Doctor ZM, Ficarro SB, Marto JA, Kim ND, Sim T, Gray NS. Synthesis and structure activity relationships of a series of 4-amino-1H-pyrazoles as covalent inhibitors of CDK14. Bioorganic & Medicinal Chemistry Letters. PMID 31175010 DOI: 10.1016/j.bmcl.2019.05.024  0.56
2019 Rao S, Gurbani D, Du G, Everley RA, Browne CM, Chaikuad A, Li T, Schröder M, Gondi S, Ficarro SB, Sim T, Kim ND, Berberich MJ, Knapp S, Marto JA, et al. Leveraging Compound Promiscuity to Identify Targetable Cysteines within the Kinome. Cell Chemical Biology. PMID 30982749 DOI: 10.1016/j.chembiol.2019.02.021  0.56
2019 Ferguson FM, Doctor ZM, Ficarro SB, Browne CM, Marto JA, Johnson JL, Yaron TM, Cantley LC, Kim ND, Sim T, Berberich MJ, Kalocsay M, Sorger PK, Gray NS. Discovery of Covalent CDK14 Inhibitors with Pan-TAIRE Family Specificity. Cell Chemical Biology. PMID 30930164 DOI: 10.1016/j.chembiol.2019.02.015  0.56
2019 Olson CM, Liang Y, Leggett A, Park WD, Li L, Mills CE, Elsarrag SZ, Ficarro SB, Zhang T, Düster R, Geyer M, Sim T, Marto JA, Sorger PK, Westover KD, et al. Development of a Selective CDK7 Covalent Inhibitor Reveals Predominant Cell-Cycle Phenotype. Cell Chemical Biology. PMID 30905681 DOI: 10.1016/j.chembiol.2019.02.012  0.56
2019 Joo YJ, Ficarro SB, Chun Y, Marto JA, Buratowski S. In vitro analysis of RNA polymerase II elongation complex dynamics. Genes & Development. PMID 30846429 DOI: 10.1101/gad.324202.119  0.56
2019 Joo YJ, Ficarro SB, Marto JA, Buratowski S. In vitro assembly and proteomic analysis of RNA polymerase II complexes. Methods (San Diego, Calif.). PMID 30844430 DOI: 10.1016/j.ymeth.2019.03.001  0.56
2019 Adelmant G, Garg BK, Tavares M, Card JD, Marto JA. Tandem Affinity Purification and Mass Spectrometry (TAP-MS) for the Analysis of Protein Complexes. Current Protocols in Protein Science. e84. PMID 30706993 DOI: 10.1002/cpps.84  0.52
2018 Browne CM, Jiang B, Ficarro SB, Doctor ZM, Johnson JL, Card JD, Sivakumaren SC, Alexander WM, Yaron T, Murphy CJ, Kwiatkowski NP, Zhang T, Cantley LC, Gray NS, Marto JA. A Chemoproteomic Strategy for Direct and Proteome-wide Covalent Inhibitor Target-site Identification. Journal of the American Chemical Society. PMID 30518210 DOI: 10.1021/jacs.8b07911  0.56
2018 Chu N, Salguero AL, Liu AZ, Chen Z, Dempsey DR, Ficarro SB, Alexander WM, Marto JA, Li Y, Amzel LM, Gabelli SB, Cole PA. Akt Kinase Activation Mechanisms Revealed Using Protein Semisynthesis. Cell. PMID 30078705 DOI: 10.1016/j.cell.2018.07.003  0.56
2018 de Wispelaere M, Lian W, Potisopon S, Li PC, Jang J, Ficarro SB, Clark MJ, Zhu X, Kaplan JB, Pitts JD, Wales TE, Wang J, Engen JR, Marto JA, Gray NS, et al. Inhibition of Flaviviruses by Targeting a Conserved Pocket on the Viral Envelope Protein. Cell Chemical Biology. PMID 29937406 DOI: 10.1016/j.chembiol.2018.05.011  0.56
2018 Miotto B, Marchal C, Adelmant G, Guinot N, Xie P, Marto JA, Zhang L, Defossez PA. Stabilization of the methyl-CpG binding protein ZBTB38 by the deubiquitinase USP9X limits the occurrence and toxicity of oxidative stress in human cells. Nucleic Acids Research. PMID 29490077 DOI: 10.1093/nar/gky149  0.52
2018 Hatcher JM, Wu G, Zeng C, Zhu J, Meng F, Patel S, Wang W, Ficarro SB, Leggett AL, Powell CE, Marto JA, Zhang K, Ki Ngo JC, Fu XD, Zhang T, et al. SRPKIN-1: A Covalent SRPK1/2 Inhibitor that Potently Converts VEGF from Pro-angiogenic to Anti-angiogenic Isoform. Cell Chemical Biology. PMID 29478907 DOI: 10.1016/j.chembiol.2018.01.013  0.56
2017 Gao Y, Zhang T, Terai H, Ficarro SB, Kwiatkowski N, Hao MF, Sharma B, Christensen CL, Chipumuro E, Wong KK, Marto JA, Hammerman PS, Gray NS, George RE. Overcoming Resistance to the THZ Series of Covalent Transcriptional CDK Inhibitors. Cell Chemical Biology. PMID 29276047 DOI: 10.1016/j.chembiol.2017.11.007  0.56
2017 Soltis AR, Kennedy NJ, Xin X, Zhou F, Ficarro SB, Yap YS, Matthews BJ, Lauffenburger DA, White FM, Marto JA, Davis RJ, Fraenkel E. Hepatic Dysfunction Caused by Consumption of a High-Fat Diet. Cell Reports. 21: 3317-3328. PMID 29241556 DOI: 10.1016/j.celrep.2017.11.059  0.72
2017 Joo YJ, Ficarro SB, Soares LM, Chun Y, Marto JA, Buratowski S. Downstream promoter interactions of TFIID TAFs facilitate transcription reinitiation. Genes & Development. 31: 2162-2174. PMID 29203645 DOI: 10.1101/gad.306324.117  0.56
2017 Cato L, Neeb A, Sharp A, Buzón V, Ficarro SB, Yang L, Muhle-Goll C, Kuznik NC, Riisnaes R, Nava Rodrigues D, Armant O, Gourain V, Adelmant G, Ntim EA, Westerling T, ... ... Marto JA, et al. Development of Bag-1L as a therapeutic target in androgen receptor-dependent prostate cancer. Elife. 6. PMID 28826504 DOI: 10.7554/eLife.27159  0.56
2017 Ferry L, Fournier A, Tsusaka T, Adelmant G, Shimazu T, Matano S, Kirsh O, Amouroux R, Dohmae N, Suzuki T, Filion GJ, Deng W, de Dieuleveult M, Fritsch L, Kudithipudi S, ... ... Marto JA, et al. Methylation of DNA Ligase 1 by G9a/GLP Recruits UHRF1 to Replicating DNA and Regulates DNA Methylation. Molecular Cell. PMID 28803780 DOI: 10.1016/j.molcel.2017.07.012  0.52
2017 Zeng M, Lu J, Li L, Feru F, Quan C, Gero TW, Ficarro SB, Xiong Y, Ambrogio C, Paranal RM, Catalano M, Shao J, Wong KK, Marto JA, Fischer ES, et al. Potent and Selective Covalent Quinazoline Inhibitors of KRAS G12C. Cell Chemical Biology. PMID 28781124 DOI: 10.1016/j.chembiol.2017.06.017  0.56
2017 Ficarro SB, Alexander WM, Marto JA. mzStudio: A Dynamic Digital Canvas for User-Driven Interrogation of Mass Spectrometry Data. Proteomes. 5. PMID 28763045 DOI: 10.3390/proteomes5030020  0.56
2017 Cho IT, Adelmant G, Lim Y, Marto JA, Cho G, Golden JA. Ascorbate peroxidase proximity labeling coupled with biochemical fractionation identifies promoters of endoplasmic reticulum mitochondrial contacts. The Journal of Biological Chemistry. PMID 28760823 DOI: 10.1074/jbc.M117.795286  0.52
2017 Zhang J, Gao X, Schmit F, Adelmant G, Eck MJ, Marto JA, Zhao JJ, Roberts TM. CRKL Mediates p110β-Dependent PI3K Signaling in PTEN-Deficient Cancer Cells. Cell Reports. 20: 549-557. PMID 28723560 DOI: 10.1016/j.celrep.2017.06.054  0.52
2017 Alexander WM, Ficarro SB, Adelmant G, Marto JA. multiplierz v2.0: a Python-based ecosystem for shared access and analysis of native mass spectrometry data. Proteomics. PMID 28686798 DOI: 10.1002/pmic.201700091  0.56
2017 Hsu JH, Hubbell-Engler B, Adelmant G, Huang J, Joyce CE, Vazquez F, Weir BA, Montgomery P, Tsherniak A, Giacomelli AO, Perry JA, Trowbridge J, Fujiwara Y, Cowley GS, Xie H, ... ... Marto JA, et al. Prmt1-mediated translation regulation is a crucial vulnerability of cancer. Cancer Research. PMID 28655788 DOI: 10.1158/0008-5472.CAN-17-0216  0.52
2017 Zhou J, Tien AC, Alberta JA, Ficarro SB, Griveau A, Sun Y, Deshpande JS, Card JD, Morgan-Smith M, Michowski W, Hashizume R, James CD, Ligon KL, Snider WD, Sicinski P, ... Marto JA, et al. A Sequentially Priming Phosphorylation Cascade Activates the Gliomagenic Transcription Factor Olig2. Cell Reports. 18: 3167-3177. PMID 28355568 DOI: 10.1016/j.celrep.2017.03.003  0.56
2017 Tavera-Mendoza LE, Westerling T, Libby E, Marusyk A, Cato L, Cassani R, Cameron LA, Ficarro SB, Marto JA, Klawitter J, Brown M. Vitamin D receptor regulates autophagy in the normal mammary gland and in luminal breast cancer cells. Proceedings of the National Academy of Sciences of the United States of America. PMID 28242709 DOI: 10.1073/pnas.1615015114  0.56
2017 Chen H, Coseno M, Ficarro SB, Mansueto MS, Komazin-Meredith G, Boissel S, Filman DJ, Marto JA, Hogle JM, Coen DM. A Small Covalent Allosteric Inhibitor of Human Cytomegalovirus DNA Polymerase Subunit Interactions. Acs Infectious Diseases. 3: 112-118. PMID 28183184 DOI: 10.1021/acsinfecdis.6b00079  0.56
2017 Kang UB, Alexander WM, Marto JA. Interrogating the hidden phosphoproteome. Proteomics. PMID 28165663 DOI: 10.1002/pmic.201600437  0.4
2016 Ficarro SB, Browne CM, Card JD, Alexander WM, Zhang T, Park E, McNally R, Dhe-Paganon S, Seo HS, Lamberto I, Eck MJ, Buhrlage SJ, Gray NS, Marto JA. Leveraging Gas-Phase Fragmentation Pathways for Improved Identification and Selective Detection of Targets Modified by Covalent Probes. Analytical Chemistry. 88: 12248-12254. PMID 28193034 DOI: 10.1021/acs.analchem.6b03394  0.56
2016 Durzynska I, Xu X, Adelmant G, Ficarro SB, Marto JA, Sliz P, Uljon S, Blacklow SC. STK40 Is a Pseudokinase that Binds the E3 Ubiquitin Ligase COP1. Structure (London, England : 1993). PMID 28089446 DOI: 10.1016/j.str.2016.12.008  0.56
2016 Tan L, Gurbani D, Weisberg EL, Hunter JC, Li L, Jones DS, Ficarro SB, Mowafy S, Tam CP, Rao S, Du G, Griffin JD, Sorger PK, Marto JA, Westover KD, et al. Structure-guided development of covalent TAK1 inhibitors. Bioorganic & Medicinal Chemistry. PMID 28011204 DOI: 10.1016/j.bmc.2016.11.035  0.56
2016 Harshbarger W, Gondi S, Ficarro SB, Hunter J, Udayakumar D, Gurbani D, Singer W, Liu Y, Li L, Marto JA, Westover KD. Structural and Biochemical Analyses Reveal the Mechanism of Glutathione S-Transferase Pi 1 Inhibition by the Anti-cancer Compound Piperlongumine. The Journal of Biological Chemistry. PMID 27872191 DOI: 10.1074/jbc.M116.750299  0.56
2016 Norberg E, Lako A, Chen PH, Stanley IA, Zhou F, Ficarro SB, Chapuy B, Chen L, Rodig S, Shin D, Choi DW, Lee S, Shipp MA, Marto JA, Danial NN. Differential contribution of the mitochondrial translation pathway to the survival of diffuse large B-cell lymphoma subsets. Cell Death and Differentiation. PMID 27768122 DOI: 10.1038/cdd.2016.116  0.56
2016 Cho H, Wivagg CN, Kapoor M, Barry Z, Rohs PD, Suh H, Marto JA, Garner EC, Bernhardt TG. Bacterial cell wall biogenesis is mediated by SEDS and PBP polymerase families functioning semi-autonomously. Nature Microbiology. 1: 16172. PMID 27643381 DOI: 10.1038/nmicrobiol.2016.172  0.72
2016 Zhang T, Kwiatkowski N, Olson CM, Dixon-Clarke SE, Abraham BJ, Greifenberg AK, Ficarro SB, Elkins JM, Liang Y, Hannett NM, Manz T, Hao M, Bartkowiak B, Greenleaf AL, Marto JA, et al. Covalent targeting of remote cysteine residues to develop CDK12 and CDK13 inhibitors. Nature Chemical Biology. PMID 27571479 DOI: 10.1038/nchembio.2166  0.72
2016 Wang LD, Ficarro SB, Hutchinson JN, Csepanyi-Komi R, Nguyen PT, Wisniewski E, Sullivan J, Hofmann O, Ligeti E, Marto JA, Wagers AJ. Phosphoproteomic profiling of mouse primary hematopoietic stem and progenitor cells reveals new regulators of HSPC mobilization. Blood. PMID 27365422 DOI: 10.1182/blood-2016-05-711424  0.56
2016 Zhang J, Ratanasirintrawoot S, Chandrasekaran S, Wu Z, Ficarro SB, Yu C, Ross CA, Cacchiarelli D, Xia Q, Seligson M, Shinoda G, Xie W, Cahan P, Wang L, Ng SC, ... ... Marto JA, et al. LIN28 Regulates Stem Cell Metabolism and Conversion to Primed Pluripotency. Cell Stem Cell. PMID 27320042 DOI: 10.1016/j.stem.2016.05.009  0.56
2016 Uljon S, Xu X, Durzynska I, Stein S, Adelmant G, Marto JA, Pear WS, Blacklow SC. Structural Basis for Substrate Selectivity of the E3 Ligase COP1. Structure (London, England : 1993). PMID 27041596 DOI: 10.1016/j.str.2016.03.002  0.72
2016 Suh H, Ficarro SB, Kang UB, Chun Y, Marto JA, Buratowski S. Direct Analysis of Phosphorylation Sites on the Rpb1 C-Terminal Domain of RNA Polymerase II. Molecular Cell. 61: 297-304. PMID 26799764 DOI: 10.1016/j.molcel.2015.12.021  0.72
2015 Zhang C, Li X, Adelmant G, Dobbins J, Geisen C, Oser MG, Wucherpfenning KW, Marto JA, Kaelin WG. Peptidic degron in EID1 is recognized by an SCF E3 ligase complex containing the orphan F-box protein FBXO21. Proceedings of the National Academy of Sciences of the United States of America. PMID 26631746 DOI: 10.1073/pnas.1522006112  0.72
2015 Park E, Kim N, Ficarro SB, Zhang Y, Lee BI, Cho A, Kim K, Park AK, Park WY, Murray B, Meyerson M, Beroukhim R, Marto JA, Cho J, Eck MJ. Structure and mechanism of activity-based inhibition of the EGF receptor by Mig6. Nature Structural & Molecular Biology. 22: 703-11. PMID 26280531 DOI: 10.1038/nsmb.3074  0.56
2015 Tan L, Akahane K, McNally R, Reyskens KM, Ficarro SB, Liu S, Herter-Sprie GS, Koyama S, Pattison MJ, Labella KM, Johannessen L, Akbay EA, Wong KK, Frank DA, Marto JA, et al. Development of Selective Covalent JAK3 Inhibitors. Journal of Medicinal Chemistry. PMID 26258521 DOI: 10.1021/acs.jmedchem.5b00710  0.72
2015 Lee J, Adelmant G, Marto JA, Lee DH. Dephosphorylation of DBC1 by Protein Phosphatase 4 Is Important for p53-Mediated Cellular Functions. Molecules and Cells. 38: 697-704. PMID 26194823 DOI: 10.14348/molcells.2015.0066  0.72
2015 Lim SM, Xie T, Westover KD, Ficarro SB, Tae HS, Gurbani D, Sim T, Marto JA, Jänne PA, Crews CM, Gray NS. Development of small molecules targeting the pseudokinase Her3. Bioorganic & Medicinal Chemistry Letters. 25: 3382-9. PMID 26094118 DOI: 10.1016/j.bmcl.2015.04.103  0.72
2015 Hwang JH, Pores Fernando AT, Faure N, Andrabi S, Adelmant G, Hahn WC, Marto JA, Schaffhausen BS, Roberts TM. Correction for hwang et Al., polyomavirus small T antigen interacts with yes-associated protein to regulate cell survival and differentiation. Journal of Virology. 89: 6971. PMID 26041839 DOI: 10.1128/JVI.00952-15  0.72
2015 Zhu D, Wang Z, Zhao JJ, Calimeri T, Meng J, Hideshima T, Fulciniti M, Kang Y, Ficarro SB, Tai YT, Hunter Z, McMilin D, Tong H, Mitsiades CS, Wu CJ, ... ... Marto JA, et al. The Cyclophilin A-CD147 complex promotes the proliferation and homing of multiple myeloma cells. Nature Medicine. 21: 572-80. PMID 26005854 DOI: 10.1038/nm.3867  0.72
2015 Yoda A, Adelmant G, Tamburini J, Chapuy B, Shindoh N, Yoda Y, Weigert O, Kopp N, Wu SC, Kim SS, Liu H, Tivey T, Christie AL, Elpek KG, Card J, ... ... Marto JA, et al. Mutations in G protein β subunits promote transformation and kinase inhibitor resistance. Nature Medicine. 21: 71-5. PMID 25485910 DOI: 10.1038/nm.3751  0.72
2015 Labidi-Galy SI, Clauss A, Ng V, Duraisamy S, Elias KM, Piao HY, Bilal E, Davidowitz RA, Lu Y, Badalian-Very G, Györffy B, Kang UB, Ficarro S, Ganesan S, Mills GB, ... Marto JA, et al. Elafin drives poor outcome in high-grade serous ovarian cancers and basal-like breast tumors. Oncogene. 34: 373-83. PMID 24469047 DOI: 10.1038/onc.2013.562  0.72
2015 Park E, Kim N, Ficarro SB, Zhang Y, Lee BI, Cho A, Kim K, Park AKJ, Park WY, Murray B, Meyerson M, Beroukhim R, Marto JA, Cho J, Eck MJ. Structure and mechanism of activity-based inhibition of the EGF receptor by Mig6 Nature Structural and Molecular Biology. DOI: 10.1038/nsmb.3074  0.72
2014 Xie T, Lim SM, Westover KD, Dodge ME, Ercan D, Ficarro SB, Udayakumar D, Gurbani D, Tae HS, Riddle SM, Sim T, Marto JA, Jänne PA, Crews CM, Gray NS. Pharmacological targeting of the pseudokinase Her3. Nature Chemical Biology. 10: 1006-12. PMID 25326665 DOI: 10.1038/nchembio.1658  0.72
2014 Hu Y, Petit SA, Ficarro SB, Toomire KJ, Xie A, Lim E, Cao SA, Park E, Eck MJ, Scully R, Brown M, Marto JA, Livingston DM. PARP1-driven poly-ADP-ribosylation regulates BRCA1 function in homologous recombination-mediated DNA repair. Cancer Discovery. 4: 1430-47. PMID 25252691 DOI: 10.1158/2159-8290.CD-13-0891  0.72
2014 Quan J, Adelmant G, Marto JA, Look AT, Yusufzai T. The chromatin remodeling factor CHD5 is a transcriptional repressor of WEE1. Plos One. 9: e108066. PMID 25247294 DOI: 10.1371/journal.pone.0108066  0.72
2014 Gridling M, Ficarro SB, Breitwieser FP, Song L, Parapatics K, Colinge J, Haura EB, Marto JA, Superti-Furga G, Bennett KL, Rix U. Identification of kinase inhibitor targets in the lung cancer microenvironment by chemical and phosphoproteomics. Molecular Cancer Therapeutics. 13: 2751-62. PMID 25189542 DOI: 10.1158/1535-7163.MCT-14-0152  0.72
2014 Hill SJ, Rolland T, Adelmant G, Xia X, Owen MS, Dricot A, Zack TI, Sahni N, Jacob Y, Hao T, McKinney KM, Clark AP, Reyon D, Tsai SQ, Joung JK, ... ... Marto JA, et al. Systematic screening reveals a role for BRCA1 in the response to transcription-associated DNA damage. Genes & Development. 28: 1957-75. PMID 25184681 DOI: 10.1101/gad.241620.114  0.72
2014 Kwiatkowski N, Zhang T, Rahl PB, Abraham BJ, Reddy J, Ficarro SB, Dastur A, Amzallag A, Ramaswamy S, Tesar B, Jenkins CE, Hannett NM, McMillin D, Sanda T, Sim T, ... ... Marto JA, et al. Targeting transcription regulation in cancer with a covalent CDK7 inhibitor. Nature. 511: 616-20. PMID 25043025 DOI: 10.1038/nature13393  0.72
2014 Meijer DH, Sun Y, Liu T, Kane MF, Alberta JA, Adelmant G, Kupp R, Marto JA, Rowitch DH, Nakatani Y, Stiles CD, Mehta S. An amino terminal phosphorylation motif regulates intranuclear compartmentalization of Olig2 in neural progenitor cells. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 34: 8507-18. PMID 24948806 DOI: 10.1523/JNEUROSCI.0309-14.2014  0.72
2014 Doherty MF, Adelmant G, Cecchetelli AD, Marto JA, Cram EJ. Proteomic analysis reveals CACN-1 is a component of the spliceosome in Caenorhabditis elegans. G3 (Bethesda, Md.). 4: 1555-64. PMID 24948787 DOI: 10.1534/g3.114.012013  0.72
2014 Hunter JC, Gurbani D, Ficarro SB, Carrasco MA, Lim SM, Choi HG, Xie T, Marto JA, Chen Z, Gray NS, Westover KD. In situ selectivity profiling and crystal structure of SML-8-73-1, an active site inhibitor of oncogenic K-Ras G12C. Proceedings of the National Academy of Sciences of the United States of America. 111: 8895-900. PMID 24889603 DOI: 10.1073/pnas.1404639111  0.72
2014 Lu Y, Loh YH, Li H, Cesana M, Ficarro SB, Parikh JR, Salomonis N, Toh CX, Andreadis ST, Luckey CJ, Collins JJ, Daley GQ, Marto JA. Alternative splicing of MBD2 supports self-renewal in human pluripotent stem cells. Cell Stem Cell. 15: 92-101. PMID 24813856 DOI: 10.1016/j.stem.2014.04.002  0.72
2014 Lee DH, Acharya SS, Kwon M, Drane P, Guan Y, Adelmant G, Kalev P, Shah J, Pellman D, Marto JA, Chowdhury D. Dephosphorylation enables the recruitment of 53BP1 to double-strand DNA breaks. Molecular Cell. 54: 512-25. PMID 24703952 DOI: 10.1016/j.molcel.2014.03.020  0.72
2014 Kim H, Dejsuphong D, Adelmant G, Ceccaldi R, Yang K, Marto JA, D'Andrea AD. Transcriptional repressor ZBTB1 promotes chromatin remodeling and translesion DNA synthesis. Molecular Cell. 54: 107-18. PMID 24657165 DOI: 10.1016/j.molcel.2014.02.017  0.72
2014 Watanabe H, Ma Q, Peng S, Adelmant G, Swain D, Song W, Fox C, Francis JM, Pedamallu CS, DeLuca DS, Brooks AN, Wang S, Que J, Rustgi AK, Wong KK, ... ... Marto JA, et al. SOX2 and p63 colocalize at genetic loci in squamous cell carcinomas. The Journal of Clinical Investigation. 124: 1636-45. PMID 24590290 DOI: 10.1172/JCI71545  0.72
2014 Ficarro SB, Biagi JM, Wang J, Scotcher J, Koleva RI, Card JD, Adelmant G, He H, Askenazi M, Marshall AG, Young NL, Gray NS, Marto JA. Protected amine labels: a versatile molecular scaffold for multiplexed nominal mass and sub-Da isotopologue quantitative proteomic reagents. Journal of the American Society For Mass Spectrometry. 25: 636-50. PMID 24496597 DOI: 10.1007/s13361-013-0811-x  0.72
2014 Lim SM, Westover KD, Ficarro SB, Harrison RA, Choi HG, Pacold ME, Carrasco M, Hunter J, Kim ND, Xie T, Sim T, Jänne PA, Meyerson M, Marto JA, Engen JR, et al. Therapeutic targeting of oncogenic K-Ras by a covalent catalytic site inhibitor. Angewandte Chemie (International Ed. in English). 53: 199-204. PMID 24259466 DOI: 10.1002/anie.201307387  0.72
2013 Toms AV, Deshpande A, McNally R, Jeong Y, Rogers JM, Kim CU, Gruner SM, Ficarro SB, Marto JA, Sattler M, Griffin JD, Eck MJ. Structure of a pseudokinase-domain switch that controls oncogenic activation of Jak kinases. Nature Structural & Molecular Biology. 20: 1221-3. PMID 24013208 DOI: 10.1038/nsmb.2673  0.72
2013 Zhou F, Lu Y, Ficarro SB, Adelmant G, Jiang W, Luckey CJ, Marto JA. Genome-scale proteome quantification by DEEP SEQ mass spectrometry. Nature Communications. 4: 2171. PMID 23863870 DOI: 10.1038/ncomms3171  0.72
2013 Andrawes MB, Xu X, Liu H, Ficarro SB, Marto JA, Aster JC, Blacklow SC. Intrinsic selectivity of Notch 1 for Delta-like 4 over Delta-like 1. The Journal of Biological Chemistry. 288: 25477-89. PMID 23839946 DOI: 10.1074/jbc.M113.454850  0.72
2013 Wang Q, Moore MJ, Adelmant G, Marto JA, Silver PA. PQBP1, a factor linked to intellectual disability, affects alternative splicing associated with neurite outgrowth. Genes & Development. 27: 615-26. PMID 23512658 DOI: 10.1101/gad.212308.112  0.72
2013 Webber JT, Askenazi M, Ficarro SB, Iglehart MA, Marto JA. Library dependent LC-MS/MS acquisition via mzAPI/Live. Proteomics. 13: 1412-6. PMID 23457059 DOI: 10.1002/pmic.201200583  0.72
2013 Tu D, Zhu Z, Zhou AY, Yun CH, Lee KE, Toms AV, Li Y, Dunn GP, Chan E, Thai T, Yang S, Ficarro SB, Marto JA, Jeon H, Hahn WC, et al. Structure and ubiquitination-dependent activation of TANK-binding kinase 1. Cell Reports. 3: 747-58. PMID 23453972 DOI: 10.1016/j.celrep.2013.01.033  0.72
2013 Duarte M, Wang L, Calderwood MA, Adelmant G, Ohashi M, Roecklein-Canfield J, Marto JA, Hill DE, Deng H, Johannsen E. An RS motif within the Epstein-Barr virus BLRF2 tegument protein is phosphorylated by SRPK2 and is important for viral replication. Plos One. 8: e53512. PMID 23326445 DOI: 10.1371/journal.pone.0053512  0.72
2013 Mandel M, Askenazi M, Zhang Y, Marto JA. Variance function estimation in quantitative mass spectrometry with application to iTRAQ labeling Annals of Applied Statistics. 7: 1-24. DOI: 10.1214/12-AOAS572  0.72
2012 Fine DA, Rozenblatt-Rosen O, Padi M, Korkhin A, James RL, Adelmant G, Yoon R, Guo L, Berrios C, Zhang Y, Calderwood MA, Velmurgan S, Cheng J, Marto JA, Hill DE, et al. Identification of FAM111A as an SV40 host range restriction and adenovirus helper factor. Plos Pathogens. 8: e1002949. PMID 23093934 DOI: 10.1371/journal.ppat.1002949  0.72
2012 Caro P, Kishan AU, Norberg E, Stanley IA, Chapuy B, Ficarro SB, Polak K, Tondera D, Gounarides J, Yin H, Zhou F, Green MR, Chen L, Monti S, Marto JA, et al. Metabolic signatures uncover distinct targets in molecular subsets of diffuse large B cell lymphoma. Cancer Cell. 22: 547-60. PMID 23079663 DOI: 10.1016/j.ccr.2012.08.014  0.72
2012 Parikh JR, Xia Y, Marto JA. Multi-edge gene set networks reveal novel insights into global relationships between biological themes. Plos One. 7: e45211. PMID 23028852 DOI: 10.1371/journal.pone.0045211  0.72
2012 Sikorski TW, Joo YJ, Ficarro SB, Askenazi M, Buratowski S, Marto JA. Proteomic analysis demonstrates activator- and chromatin-specific recruitment to promoters. The Journal of Biological Chemistry. 287: 35397-408. PMID 22902623 DOI: 10.1074/jbc.M112.391581  0.72
2012 Rozenblatt-Rosen O, Deo RC, Padi M, Adelmant G, Calderwood MA, Rolland T, Grace M, Dricot A, Askenazi M, Tavares M, Pevzner SJ, Abderazzaq F, Byrdsong D, Carvunis AR, Chen AA, ... ... Marto JA, et al. Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins. Nature. 487: 491-5. PMID 22810586 DOI: 10.1038/nature11288  0.4
2012 Gulbahce N, Yan H, Dricot A, Padi M, Byrdsong D, Franchi R, Lee DS, Rozenblatt-Rosen O, Mar JC, Calderwood MA, Baldwin A, Zhao B, Santhanam B, Braun P, Simonis N, ... ... Marto JA, et al. Viral perturbations of host networks reflect disease etiology. Plos Computational Biology. 8: e1002531. PMID 22761553 DOI: 10.1371/journal.pcbi.1002531  0.72
2012 Adelmant G, Calkins AS, Garg BK, Card JD, Askenazi M, Miron A, Sobhian B, Zhang Y, Nakatani Y, Silver PA, Iglehart JD, Marto JA, Lazaro JB. DNA ends alter the molecular composition and localization of Ku multicomponent complexes. Molecular & Cellular Proteomics : McP. 11: 411-21. PMID 22535209 DOI: 10.1074/mcp.M111.013581  0.72
2012 Zhou F, Lu Y, Ficarro SB, Webber JT, Marto JA. Nanoflow low pressure high peak capacity single dimension LC-MS/MS platform for high-throughput, in-depth analysis of mammalian proteomes. Analytical Chemistry. 84: 5133-9. PMID 22519751 DOI: 10.1021/ac2031404  0.72
2012 Lee DH, Goodarzi AA, Adelmant GO, Pan Y, Jeggo PA, Marto JA, Chowdhury D. Phosphoproteomic analysis reveals that PP4 dephosphorylates KAP-1 impacting the DNA damage response. The Embo Journal. 31: 2403-15. PMID 22491012 DOI: 10.1038/emboj.2012.86  0.72
2012 Koleva RI, Ficarro SB, Radomska HS, Carrasco-Alfonso MJ, Alberta JA, Webber JT, Luckey CJ, Marcucci G, Tenen DG, Marto JA. C/EBPα and DEK coordinately regulate myeloid differentiation. Blood. 119: 4878-88. PMID 22474248 DOI: 10.1182/blood-2011-10-383083  0.72
2012 Zhang T, Inesta-Vaquera F, Niepel M, Zhang J, Ficarro SB, Machleidt T, Xie T, Marto JA, Kim N, Sim T, Laughlin JD, Park H, LoGrasso PV, Patricelli M, Nomanbhoy TK, et al. Discovery of potent and selective covalent inhibitors of JNK. Chemistry & Biology. 19: 140-54. PMID 22284361 DOI: 10.1016/j.chembiol.2011.11.010  0.72
2012 Cardoza JD, Parikh JR, Ficarro SB, Marto JA. Mass spectrometry-based proteomics: qualitative identification to activity-based protein profiling. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 4: 141-62. PMID 22231900 DOI: 10.1002/wsbm.166  0.72
2011 Traylor-Knowles N, Granger BR, Lubinski TJ, Parikh JR, Garamszegi S, Xia Y, Marto JA, Kaufman L, Finnerty JR. Production of a reference transcriptome and transcriptomic database (PocilloporaBase) for the cauliflower coral, Pocillopora damicornis. Bmc Genomics. 12: 585. PMID 22126435 DOI: 10.1186/1471-2164-12-585  0.72
2011 Luckey CJ, Lu Y, Marto JA. Understanding the first steps in embryonic stem cell exit from the pluripotent state. Transfusion. 51: 118S-124S. PMID 22074622 DOI: 10.1111/j.1537-2995.2011.03374.x  0.72
2011 Sikorski TW, Ficarro SB, Holik J, Kim T, Rando OJ, Marto JA, Buratowski S. Sub1 and RPA associate with RNA polymerase II at different stages of transcription. Molecular Cell. 44: 397-409. PMID 22055186 DOI: 10.1016/j.molcel.2011.09.013  0.72
2011 Savitski MM, Sweetman G, Askenazi M, Marto JA, Lang M, Zinn N, Bantscheff M. Delayed fragmentation and optimized isolation width settings for improvement of protein identification and accuracy of isobaric mass tag quantification on Orbitrap-type mass spectrometers. Analytical Chemistry. 83: 8959-67. PMID 22017476 DOI: 10.1021/ac201760x  0.72
2011 Pathania S, Nguyen J, Hill SJ, Scully R, Adelmant GO, Marto JA, Feunteun J, Livingston DM. BRCA1 is required for postreplication repair after UV-induced DNA damage. Molecular Cell. 44: 235-51. PMID 21963239 DOI: 10.1016/j.molcel.2011.09.002  0.72
2011 Odajima J, Wills ZP, Ndassa YM, Terunuma M, Kretschmannova K, Deeb TZ, Geng Y, Gawrzak S, Quadros IM, Newman J, Das M, Jecrois ME, Yu Q, Li N, Bienvenu F, ... ... Marto JA, et al. Cyclin E constrains Cdk5 activity to regulate synaptic plasticity and memory formation. Developmental Cell. 21: 655-68. PMID 21944720 DOI: 10.1016/j.devcel.2011.08.009  0.72
2011 Zhou F, Sikorski TW, Ficarro SB, Webber JT, Marto JA. Online nanoflow reversed phase-strong anion exchange-reversed phase liquid chromatography-tandem mass spectrometry platform for efficient and in-depth proteome sequence analysis of complex organisms. Analytical Chemistry. 83: 6996-7005. PMID 21851055 DOI: 10.1021/ac200639v  0.72
2011 Ficarro SB, Zhang Y, Carrasco-Alfonso MJ, Garg B, Adelmant G, Webber JT, Luckey CJ, Marto JA. Online nanoflow multidimensional fractionation for high efficiency phosphopeptide analysis. Molecular & Cellular Proteomics : McP. 10: O111.011064. PMID 21788404 DOI: 10.1074/mcp.O111.011064  0.72
2011 Sand-Dejmek J, Adelmant G, Sobhian B, Calkins AS, Marto J, Iglehart DJ, Lazaro JB. Concordant and opposite roles of DNA-PK and the "facilitator of chromatin transcription" (FACT) in DNA repair, apoptosis and necrosis after cisplatin Molecular Cancer. 10. PMID 21679440 DOI: 10.1186/1476-4598-10-74  0.72
2011 Hsu PP, Kang SA, Rameseder J, Zhang Y, Ottina KA, Lim D, Peterson TR, Choi Y, Gray NS, Yaffe MB, Marto JA, Sabatini DM. The mTOR-regulated phosphoproteome reveals a mechanism of mTORC1-mediated inhibition of growth factor signaling. Science (New York, N.Y.). 332: 1317-22. PMID 21659604 DOI: 10.1126/science.1199498  0.72
2011 Tu D, Li Y, Song HK, Toms AV, Gould CJ, Ficarro SB, Marto JA, Goode BL, Eck MJ. Crystal structure of a coiled-coil domain from human ROCK I. Plos One. 6: e18080. PMID 21445309 DOI: 10.1371/journal.pone.0018080  0.72
2011 Askenazi M, Webber JT, Marto JA. mzServer: web-based programmatic access for mass spectrometry data analysis. Molecular & Cellular Proteomics : McP. 10: M110.003988. PMID 21266632 DOI: 10.1074/mcp.M110.003988  0.72
2011 Webber JT, Askenazi M, Marto JA. mzResults: an interactive viewer for interrogation and distribution of proteomics results. Molecular & Cellular Proteomics : McP. 10: M110.003970. PMID 21266631 DOI: 10.1074/mcp.M110.003970  0.72
2011 Meixner A, Boldt K, Van Troys M, Askenazi M, Gloeckner CJ, Bauer M, Marto JA, Ampe C, Kinkl N, Ueffing M. A QUICK screen for Lrrk2 interaction partners--leucine-rich repeat kinase 2 is involved in actin cytoskeleton dynamics. Molecular & Cellular Proteomics : McP. 10: M110.001172. PMID 20876399 DOI: 10.1074/mcp.M110.001172  0.72
2010 Askenazi M, Marto JA, Linial M. The complete peptide dictionary--a meta-proteomics resource. Proteomics. 10: 4306-10. PMID 21082763 DOI: 10.1002/pmic.201000270  0.72
2010 Chen Z, Sasaki T, Tan X, Carretero J, Shimamura T, Li D, Xu C, Wang Y, Adelmant GO, Capelletti M, Lee HJ, Rodig SJ, Borgman C, Park SI, Kim HR, ... ... Marto JA, et al. Inhibition of ALK, PI3K/MEK, and HSP90 in murine lung adenocarcinoma induced by EML4-ALK fusion oncogene. Cancer Research. 70: 9827-36. PMID 20952506 DOI: 10.1158/0008-5472.CAN-10-1671  0.72
2010 Zhou F, Cardoza JD, Ficarro SB, Adelmant GO, Lazaro JB, Marto JA. Online nanoflow RP-RP-MS reveals dynamics of multicomponent Ku complex in response to DNA damage. Journal of Proteome Research. 9: 6242-55. PMID 20873769 DOI: 10.1021/pr1004696  0.72
2010 Simarro M, Gimenez-Cassina A, Kedersha N, Lazaro JB, Adelmant GO, Marto JA, Rhee K, Tisdale S, Danial N, Benarafa C, Orduña A, Anderson P. Fast kinase domain-containing protein 3 is a mitochondrial protein essential for cellular respiration. Biochemical and Biophysical Research Communications. 401: 440-6. PMID 20869947 DOI: 10.1016/j.bbrc.2010.09.075  0.72
2010 Parikh JR, Klinger B, Xia Y, Marto JA, Blüthgen N. Discovering causal signaling pathways through gene-expression patterns. Nucleic Acids Research. 38: W109-17. PMID 20494976 DOI: 10.1093/nar/gkq424  0.72
2010 Argetsinger LS, Stuckey JA, Robertson SA, Koleva RI, Cline JM, Marto JA, Myers MG, Carter-Su C. Tyrosines 868, 966, and 972 in the kinase domain of JAK2 are autophosphorylated and required for maximal JAK2 kinase activity. Molecular Endocrinology (Baltimore, Md.). 24: 1062-76. PMID 20304997 DOI: 10.1210/me.2009-0355  0.72
2010 Askenazi M, Li S, Singh S, Marto JA. Pathway Palette: a rich internet application for peptide-, protein- and network-oriented analysis of MS data. Proteomics. 10: 1880-5. PMID 20198642 DOI: 10.1002/pmic.200900723  0.72
2010 Zhang Y, Askenazi M, Jiang J, Luckey CJ, Griffin JD, Marto JA. A robust error model for iTRAQ quantification reveals divergent signaling between oncogenic FLT3 mutants in acute myeloid leukemia. Molecular & Cellular Proteomics : McP. 9: 780-90. PMID 20019052 DOI: 10.1074/mcp.M900452-MCP200  0.72
2010 Levanon K, Ng V, Piao HY, Zhang Y, Chang MC, Roh MH, Kindelberger DW, Hirsch MS, Crum CP, Marto JA, Drapkin R. Primary ex vivo cultures of human fallopian tube epithelium as a model for serous ovarian carcinogenesis. Oncogene. 29: 1103-13. PMID 19935705 DOI: 10.1038/onc.2009.402  0.72
2009 Parikh JR, Askenazi M, Ficarro SB, Cashorali T, Webber JT, Blank NC, Zhang Y, Marto JA. multiplierz: an extensible API based desktop environment for proteomics data analysis. Bmc Bioinformatics. 10: 364. PMID 19874609 DOI: 10.1186/1471-2105-10-364  0.72
2009 Ficarro SB, Adelmant G, Tomar MN, Zhang Y, Cheng VJ, Marto JA. Magnetic bead processor for rapid evaluation and optimization of parameters for phosphopeptide enrichment. Analytical Chemistry. 81: 4566-75. PMID 19408940 DOI: 10.1021/ac9004452  0.72
2009 Zhang Y, Ficarro SB, Li S, Marto JA. Optimized Orbitrap HCD for quantitative analysis of phosphopeptides. Journal of the American Society For Mass Spectrometry. 20: 1425-34. PMID 19403316 DOI: 10.1016/j.jasms.2009.03.019  0.72
2009 Robertson SA, Koleva RI, Argetsinger LS, Carter-Su C, Marto JA, Feener EP, Myers MG. Regulation of Jak2 function by phosphorylation of Tyr317 and Tyr637 during cytokine signaling. Molecular and Cellular Biology. 29: 3367-78. PMID 19364823 DOI: 10.1128/MCB.00278-09  0.72
2009 Askenazi M, Parikh JR, Marto JA. mzAPI: a new strategy for efficiently sharing mass spectrometry data. Nature Methods. 6: 240-1. PMID 19333238 DOI: 10.1038/nmeth0409-240  0.72
2009 Ficarro SB, Zhang Y, Lu Y, Moghimi AR, Askenazi M, Hyatt E, Smith ED, Boyer L, Schlaeger TM, Luckey CJ, Marto JA. Improved electrospray ionization efficiency compensates for diminished chromatographic resolution and enables proteomics analysis of tyrosine signaling in embryonic stem cells. Analytical Chemistry. 81: 3440-7. PMID 19331382 DOI: 10.1021/ac802720e  0.72
2009 Adelmant G, Marto JA. Protein complexes: the forest and the trees. Expert Review of Proteomics. 6: 5-10. PMID 19210120 DOI: 10.1586/14789450.6.1.5  0.72
2009 Hamirally S, Kamil JP, Ndassa-Colday YM, Lin AJ, Jahng WJ, Baek MC, Noton S, Silva LA, Simpson-Holley M, Knipe DM, Golan DE, Marto JA, Coen DM. Viral mimicry of Cdc2/cyclin-dependent kinase 1 mediates disruption of nuclear lamina during human cytomegalovirus nuclear egress. Plos Pathogens. 5: e1000275. PMID 19165338 DOI: 10.1371/journal.ppat.1000275  0.72
2008 Phanstiel D, Zhang Y, Marto JA, Coon JJ. Peptide and protein quantification using iTRAQ with electron transfer dissociation. Journal of the American Society For Mass Spectrometry. 19: 1255-62. PMID 18620867 DOI: 10.1016/j.jasms.2008.05.023  0.72
2008 Ficarro SB, Parikh JR, Blank NC, Marto JA. Niobium(V) oxide (Nb2O5): application to phosphoproteomics. Analytical Chemistry. 80: 4606-13. PMID 18491922 DOI: 10.1021/ac800564h  0.72
2006 Ndassa YM, Orsi C, Marto JA, Chen S, Ross MM. Improved immobilized metal affinity chromatography for large-scale phosphoproteomics applications. Journal of Proteome Research. 5: 2789-99. PMID 17022650 DOI: 10.1021/pr0602803  0.72
2006 Koleva RI, Conley BA, Romero D, Riley KS, Marto JA, Lux A, Vary CP. Endoglin structure and function: Determinants of endoglin phosphorylation by transforming growth factor-beta receptors. The Journal of Biological Chemistry. 281: 25110-23. PMID 16785228 DOI: 10.1074/jbc.M601288200  0.72
2004 Syka JE, Marto JA, Bai DL, Horning S, Senko MW, Schwartz JC, Ueberheide B, Garcia B, Busby S, Muratore T, Shabanowitz J, Hunt DF. Novel linear quadrupole ion trap/FT mass spectrometer: performance characterization and use in the comparative analysis of histone H3 post-translational modifications. Journal of Proteome Research. 3: 621-6. PMID 15253445 DOI: 10.1021/pr0499794  0.72
2004 Stover DR, Caldwell J, Marto J, Root K, Mestan J, Stumm M, Ornatsky O, Orsi C, Radosevic N, Liao L, Fabbro D, Moran MF. Differential phosphoprofiles of EGF and EGFR kinase inhibitor-treated human tumor cells and mouse xenografts Clinical Proteomics. 1: 69-80.  0.72
2003 Zarling AL, Luckey CJ, Marto JA, White FM, Brame CJ, Evans AM, Lehner PJ, Cresswell P, Shabanowitz J, Hunt DF, Engelhard VH. Tapasin is a facilitator, not an editor, of class I MHC peptide binding. Journal of Immunology (Baltimore, Md. : 1950). 171: 5287-95. PMID 14607930  0.72
2003 Townsend DM, Marto JA, Deng M, Macdonald TJ, Hanigan MH. High pressure liquid chromatography and mass spectrometry characterization of the nephrotoxic biotransformation products of Cisplatin. Drug Metabolism and Disposition: the Biological Fate of Chemicals. 31: 705-13. PMID 12756201  0.72
2003 Ficarro S, Chertihin O, Westbrook VA, White F, Jayes F, Kalab P, Marto JA, Shabanowitz J, Herr JC, Hunt DF, Visconti PE. Phosphoproteome analysis of capacitated human sperm. Evidence of tyrosine phosphorylation of a kinase-anchoring protein 3 and valosin-containing protein/p97 during capacitation. The Journal of Biological Chemistry. 278: 11579-89. PMID 12509440 DOI: 10.1074/jbc.M202325200  0.72
2002 Lippolis JD, White FM, Marto JA, Luckey CJ, Bullock TN, Shabanowitz J, Hunt DF, Engelhard VH. Analysis of MHC class II antigen processing by quantitation of peptides that constitute nested sets. Journal of Immunology (Baltimore, Md. : 1950). 169: 5089-97. PMID 12391225  0.72
2002 Flyer DC, Ramakrishna V, Miller C, Myers H, McDaniel M, Root K, Flournoy C, Engelhard VH, Canaday DH, Marto JA, Ross MM, Hunt DF, Shabanowitz J, White FM. Identification by mass spectrometry of CD8(+)-T-cell Mycobacterium tuberculosis epitopes within the Rv0341 gene product. Infection and Immunity. 70: 2926-32. PMID 12010981 DOI: 10.1128/IAI.70.6.2926-2932.2002  0.72
2002 Caldwell JA, Orsi C, Root KE, Dharsee M, Wang Z, Stewart II, White FM, Brame CJ, Guha A, Micaleff J, Ornatsky O, Marto JA. Comprehensive comparative proteome analysis Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 57-58.  0.72
2002 Syka JEP, Bai DL, Stafford GC, Horning S, Shabanowitz J, Hunt DF, Marto JA. A linear quadrupole ion trap Fourier transform mass spectrometer: Performance characterization and applications to proteomics Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 129-130.  0.72
2002 Larsen B, White F, Chen J, Ornatsky O, Marto J, Caldwell J, Orsi C, Dahzee M, Wang Z, Figeys D. Phosphorylation analysis (phosmap) of complex protein mixtures Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 165-166.  0.72
2001 Kao H, Marto JA, Hoffmann TK, Shabanowitz J, Finkelstein SD, Whiteside TL, Hunt DF, Finn OJ. Identification of cyclin B1 as a shared human epithelial tumor-associated antigen recognized by T cells. The Journal of Experimental Medicine. 194: 1313-23. PMID 11696596 DOI: 10.1084/jem.194.9.1313  0.72
2001 Luckey CJ, Marto JA, Partridge M, Hall E, White FM, Lippolis JD, Shabanowitz J, Hunt DF, Engelhard VH. Differences in the expression of human class I MHC alleles and their associated peptides in the presence of proteasome inhibitors. Journal of Immunology (Baltimore, Md. : 1950). 167: 1212-21. PMID 11466336  0.72
2001 Nepom GT, Lippolis JD, White FM, Masewicz S, Marto JA, Herman A, Luckey CJ, Falk B, Shabanowitz J, Hunt DF, Engelhard VH, Nepom BS. Identification and modulation of a naturally processed T cell epitope from the diabetes-associated autoantigen human glutamic acid decarboxylase 65 (hGAD65). Proceedings of the National Academy of Sciences of the United States of America. 98: 1763-8. PMID 11172025 DOI: 10.1073/pnas.98.4.1763  0.72
2000 Martin SE, Shabanowitz J, Hunt DF, Marto JA. Subfemtomole MS and MS/MS peptide sequence analysis using nano-HPLC micro-ESI fourier transform ion cyclotron resonance mass spectrometry. Analytical Chemistry. 72: 4266-74. PMID 11008759  0.72
2000 Crotzer VL, Christian RE, Brooks JM, Shabanowitz J, Settlage RE, Marto JA, White FM, Rickinson AB, Hunt DF, Engelhard VH. Immunodominance among EBV-derived epitopes restricted by HLA-B27 does not correlate with epitope abundance in EBV-transformed B-lymphoblastoid cell lines. Journal of Immunology (Baltimore, Md. : 1950). 164: 6120-9. PMID 10843661  0.72
2000 Celli S, Marto JA, Falchetto R, Shabanowitz J, Valdivia LA, Fung JJ, Hunt DF, Kelly RH. Serum protein immunogenicity: implications for liver xenografting. Electrophoresis. 21: 965-75. PMID 10768783 DOI: 10.1002/(SICI)1522-2683(20000301)21:5<965::AID-ELPS965>3.0.CO;2-D  0.72
1999 Pierce RA, Field ED, den Haan JM, Caldwell JA, White FM, Marto JA, Wang W, Frost LM, Blokland E, Reinhardus C, Shabanowitz J, Hunt DF, Goulmy E, Engelhard VH. Cutting edge: the HLA-A*0101-restricted HY minor histocompatibility antigen originates from DFFRY and contains a cysteinylated cysteine residue as identified by a novel mass spectrometric technique. Journal of Immunology (Baltimore, Md. : 1950). 163: 6360-4. PMID 10586024  0.72
1998 Luckey CJ, King GM, Marto JA, Venketeswaran S, Maier BF, Crotzer VL, Colella TA, Shabanowitz J, Hunt DF, Engelhard VH. Proteasomes can either generate or destroy MHC class I epitopes: evidence for nonproteasomal epitope generation in the cytosol. Journal of Immunology (Baltimore, Md. : 1950). 161: 112-21. PMID 9647214  0.72
1996 White FM, Marto JA, Marshall AG. An external source 7 T Fourier transform ion cyclotron resonance mass spectrometer with electrostatic ion guide. Rapid Communications in Mass Spectrometry : Rcm. 10: 1845-9. PMID 8953787 DOI: 10.1002/(SICI)1097-0231(199611)10:14<1845::AID-RCM749>3.0.CO;2-#  0.72
1996 Senko MW, Hendrickson CL, Pasa-Tolić L, Marto JA, White FM, Guan S, Marshall AG. Electrospray ionization Fourier transform ion cyclotron resonance at 9.4 T. Rapid Communications in Mass Spectrometry : Rcm. 10: 1824-8. PMID 8953784 DOI: 10.1002/(SICI)1097-0231(199611)10:14<1824::AID-RCM695>3.0.CO;2-E  0.72
1995 Marto JA, Marshall AG, May MA, Limbach PA. Ion trajectories in an electrostatic ion guide for external ion source fourier transform ion cyclotron resonance mass spectrometry. Journal of the American Society For Mass Spectrometry. 6: 936-46. PMID 24214038 DOI: 10.1016/1044-0305(95)94194-X  0.72
1995 Solouki T, Marto JA, White FM, Guan S, Marshall AG. Attomole biomolecule mass analysis by matrix-assisted laser desorption/ionization Fourier transform ion cyclotron resonance. Analytical Chemistry. 67: 4139-44. PMID 8633766  0.72
1995 Marto JA, White FM, Seldomridge S, Marshall AG. Structural characterization of phospholipids by matrix-assisted laser desorption/ionization Fourier transform ion cyclotron resonance mass spectrometry. Analytical Chemistry. 67: 3979-84. PMID 8633761  0.72
1994 Marto JA, Guan S, Marshall AG. Wide-mass-range axialization for high-resolution Fourier-transform ion cyclotron resonance mass spectrometry of externally generated ions. Rapid Communications in Mass Spectrometry : Rcm. 8: 615-20. PMID 7949329 DOI: 10.1002/rcm.1290080809  0.72
1994 Marto JA, Marshall AG, Schweikhard L. A two-electrode ion trap for Fourier transform ion cyclotron resonance mass spectrometry International Journal of Mass Spectrometry and Ion Processes. 137: 9-30. DOI: 10.1016/0168-1176(94)85008-9  0.72
Show low-probability matches.