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Shintaro Iwasaki - Publications

Affiliations: 
2016- RIKEN 
 2017- Graduate School of Frontier Sciences The University of Tokyo (Japan) 
Website:
http://iwasakirna.com/
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46 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Yoshimoto R, Nakayama Y, Nomura I, Yamamoto I, Nakagawa Y, Tanaka S, Kurihara M, Suzuki Y, Kobayashi T, Kozuka-Hata H, Oyama M, Mito M, Iwasaki S, Yamazaki T, Hirose T, et al. 4.5SH RNA counteracts deleterious exonization of SINE B1 in mice. Molecular Cell. 83: 4479-4493.e6. PMID 38096826 DOI: 10.1016/j.molcel.2023.11.019  0.413
2023 Matsuura-Suzuki E, Toh H, Iwasaki S. Human-rabbit Hybrid Translation System to Explore the Function of Modified Ribosomes. Bio-Protocol. 13: e4714. PMID 37456340 DOI: 10.21769/BioProtoc.4714  0.38
2023 Kito Y, Matsumoto A, Ichihara K, Shiraishi C, Tang R, Hatano A, Matsumoto M, Han P, Iwasaki S, Nakayama KI. The ASC-1 complex promotes translation initiation by scanning ribosomes. The Embo Journal. e112869. PMID 37092320 DOI: 10.15252/embj.2022112869  0.401
2023 Chen M, Kumakura N, Saito H, Muller R, Nishimoto M, Mito M, Gan P, Ingolia NT, Shirasu K, Ito T, Shichino Y, Iwasaki S. A parasitic fungus employs mutated eIF4A to survive on rocaglate-synthesizing plants. Elife. 12. PMID 36852480 DOI: 10.7554/eLife.81302  0.553
2022 Yamada A, Toya H, Tanahashi M, Kurihara M, Mito M, Iwasaki S, Kurosaka S, Takumi T, Fox A, Kawamura Y, Miura K, Nakagawa S. Species-Specific Formation of Paraspeckles in Intestinal Epithelium Revealed by Characterization of NEAT1 in Naked Mole-rat. Rna (New York, N.Y.). PMID 35654483 DOI: 10.1261/rna.079135.122  0.335
2022 Shichino Y, Iwasaki S. Compounds for selective translational inhibition. Current Opinion in Chemical Biology. 69: 102158. PMID 35598529 DOI: 10.1016/j.cbpa.2022.102158  0.317
2022 Mishima Y, Han P, Ishibashi K, Kimura S, Iwasaki S. Ribosome slowdown triggers codon-mediated mRNA decay independently of ribosome quality control. The Embo Journal. 41: e109256. PMID 35040509 DOI: 10.15252/embj.2021109256  0.302
2021 Chhipi-Shrestha JK, Schneider-Poetsch T, Suzuki T, Mito M, Khan K, Dohmae N, Iwasaki S, Yoshida M. Splicing modulators elicit global translational repression by condensate-prone proteins translated from introns. Cell Chemical Biology. PMID 34520743 DOI: 10.1016/j.chembiol.2021.07.015  0.391
2021 Iwakawa HO, Lam AYW, Mine A, Fujita T, Kiyokawa K, Yoshikawa M, Takeda A, Iwasaki S, Tomari Y. Ribosome stalling caused by the Argonaute-microRNA-SGS3 complex regulates the production of secondary siRNAs in plants. Cell Reports. 35: 109300. PMID 34192539 DOI: 10.1016/j.celrep.2021.109300  0.717
2021 Makino S, Kawamata T, Iwasaki S, Ohsumi Y. Selectivity of mRNA degradation by autophagy in yeast. Nature Communications. 12: 2316. PMID 33875662 DOI: 10.1038/s41467-021-22574-6  0.415
2021 Yoshimoto R, Chhipi-Shrestha JK, Schneider-Poetsch T, Furuno M, Burroughs AM, Noma S, Suzuki H, Hayashizaki Y, Mayeda A, Nakagawa S, Kaida D, Iwasaki S, Yoshida M. Spliceostatin A interaction with SF3B limits U1 snRNP availability and causes premature cleavage and polyadenylation. Cell Chemical Biology. PMID 33784500 DOI: 10.1016/j.chembiol.2021.03.002  0.458
2021 Higashi H, Kato Y, Fujita T, Iwasaki S, Nakamura M, Nishimura Y, Takenaka M, Shikanai T. The pentatricopeptide repeat protein PGR3 is required for the translation of petL and ndhG by binding their 5'UTRs. Plant & Cell Physiology. PMID 33439244 DOI: 10.1093/pcp/pcaa180  0.504
2020 Chen M, Asanuma M, Takahashi M, Shichino Y, Mito M, Fujiwara K, Saito H, Floor SN, Ingolia NT, Sodeoka M, Dodo K, Ito T, Iwasaki S. Dual targeting of DDX3 and eIF4A by the translation inhibitor rocaglamide A. Cell Chemical Biology. PMID 33296667 DOI: 10.1016/j.chembiol.2020.11.008  0.686
2020 Matsuki Y, Matsuo Y, Nakano Y, Iwasaki S, Yoko H, Udagawa T, Li S, Saeki Y, Yoshihisa T, Tanaka K, Ingolia NT, Inada T. Ribosomal protein S7 ubiquitination during ER stress in yeast is associated with selective mRNA translation and stress outcome. Scientific Reports. 10: 19669. PMID 33184379 DOI: 10.1038/s41598-020-76239-3  0.646
2020 Suzuki T, Yashiro Y, Kikuchi I, Ishigami Y, Saito H, Matsuzawa I, Okada S, Mito M, Iwasaki S, Ma D, Zhao X, Asano K, Lin H, Kirino Y, Sakaguchi Y, et al. Complete chemical structures of human mitochondrial tRNAs. Nature Communications. 11: 4269. PMID 32859890 DOI: 10.1038/S41467-020-18068-6  0.38
2020 Nakazawa K, Shichino Y, Iwasaki S, Shiina N. Implications of RNG140 (caprin2)-mediated translational regulation in eye lens differentiation. The Journal of Biological Chemistry. PMID 32839273 DOI: 10.1074/Jbc.Ra120.012715  0.443
2020 Saeki N, Eguchi Y, Kintaka R, Makanae K, Shichino Y, Iwasaki S, Kanno M, Kimura N, Moriya H. N-terminal deletion of Swi3 created by the deletion of a dubious ORF YJL175W mitigates protein burden effect in S. cerevisiae. Scientific Reports. 10: 9500. PMID 32528012 DOI: 10.1038/S41598-020-66307-Z  0.414
2020 Han P, Shichino Y, Schneider-Poetsch T, Mito M, Hashimoto S, Udagawa T, Kohno K, Yoshida M, Mishima Y, Inada T, Iwasaki S. Genome-wide Survey of Ribosome Collision. Cell Reports. 31: 107610. PMID 32375038 DOI: 10.1016/J.Celrep.2020.107610  0.492
2020 Tsuboyama K, Osaki T, Matsuura-Suzuki E, Kozuka-Hata H, Okada Y, Oyama M, Ikeuchi Y, Iwasaki S, Tomari Y. A widespread family of heat-resistant obscure (Hero) proteins protect against protein instability and aggregation. Plos Biology. 18: e3000632. PMID 32163402 DOI: 10.1371/Journal.Pbio.3000632  0.616
2019 Kurihara Y, Makita Y, Shimohira H, Fujita T, Iwasaki S, Matsui M. Translational landscape of protein-coding and non-protein-coding RNAs upon light exposure in Arabidopsis. Plant & Cell Physiology. PMID 31794029 DOI: 10.1093/Pcp/Pcz219  0.433
2019 Hia F, Yang SF, Shichino Y, Yoshinaga M, Murakawa Y, Vandenbon A, Fukao A, Fujiwara T, Landthaler M, Natsume T, Adachi S, Iwasaki S, Takeuchi O. Codon bias confers stability to human mRNAs. Embo Reports. e48220. PMID 31482640 DOI: 10.15252/Embr.201948220  0.444
2019 Padrón A, Iwasaki S, Ingolia NT. Proximity RNA Labeling by APEX-Seq Reveals the Organization of Translation Initiation Complexes and Repressive RNA Granules. Molecular Cell. 75: 875-887.e5. PMID 31442426 DOI: 10.1016/J.Molcel.2019.07.030  0.7
2019 Hirayama H, Matsuda T, Tsuchiya Y, Oka R, Seino J, Huang C, Nakajima K, Noda Y, Shichino Y, Iwasaki S, Suzuki T. Free glycans derived from -mannosylated glycoproteins suggest the presence of an -glycoprotein degradation pathway in yeast. The Journal of Biological Chemistry. PMID 31311856 DOI: 10.1074/Jbc.Ra119.009491  0.389
2019 Fujita T, Kurihara Y, Iwasaki S. The plant translatome surveyed by ribosome profiling. Plant & Cell Physiology. PMID 31004488 DOI: 10.1093/Pcp/Pcz059  0.368
2019 Mito M, Kadota M, Nakagawa S, Iwasaki S. TChIP-Seq: Cell-Type-Specific Epigenome Profiling. Journal of Visualized Experiments : Jove. PMID 30735152 DOI: 10.3791/58298  0.318
2018 Iwasaki S, Iwasaki W, Takahashi M, Sakamoto A, Watanabe C, Shichino Y, Floor SN, Fujiwara K, Mito M, Dodo K, Sodeoka M, Imataka H, Honma T, Fukuzawa K, Ito T, et al. The Translation Inhibitor Rocaglamide Targets a Bimolecular Cavity between eIF4A and Polypurine RNA. Molecular Cell. PMID 30595437 DOI: 10.1016/J.Molcel.2018.11.026  0.709
2018 Akichika S, Hirano S, Shichino Y, Suzuki T, Nishimasu H, Ishitani R, Sugita A, Hirose Y, Iwasaki S, Nureki O, Suzuki T. Cap-specific terminal -methylation of RNA by an RNA polymerase II-associated methyltransferase. Science (New York, N.Y.). PMID 30467178 DOI: 10.1126/Science.Aav0080  0.519
2018 Taiwa K, Yokoi S, Mito M, Fujii K, Kimura Y, Iwasaki S, Nakagawa S. UPA-Seq: Prediction of Functional LncRNAs Using Differential Sensitivity to UV Crosslinking. Rna (New York, N.Y.). PMID 30232101 DOI: 10.1261/Rna.067611.118  0.475
2018 Kurihara Y, Makita Y, Kawashima M, Fujita T, Iwasaki S, Matsui M. Transcripts from downstream alternative transcription start sites evade uORF-mediated inhibition of gene expression in . Proceedings of the National Academy of Sciences of the United States of America. PMID 29915080 DOI: 10.1073/Pnas.1804971115  0.348
2018 Iwasaki S, Tomari Y. Reconstitution of RNA Interference Machinery. Methods in Molecular Biology (Clifton, N.J.). 1680: 131-143. PMID 29030846 DOI: 10.1007/978-1-4939-7339-2_9  0.749
2017 Naruse K, Matsuura-Suzuki E, Watanabe M, Iwasaki S, Tomari Y. In vitro reconstitution of chaperone-mediated human RISC assembly. Rna (New York, N.Y.). PMID 28971854 DOI: 10.1261/Rna.063891.117  0.728
2017 Matsuo Y, Ikeuchi K, Saeki Y, Iwasaki S, Schmidt C, Udagawa T, Sato F, Tsuchiya H, Becker T, Tanaka K, Ingolia NT, Beckmann R, Inada T. Ubiquitination of stalled ribosome triggers ribosome-associated quality control. Nature Communications. 8: 159. PMID 28757607 DOI: 10.1038/S41467-017-00188-1  0.698
2017 Iwasaki S, Ingolia NT. The Growing Toolbox for Protein Synthesis Studies. Trends in Biochemical Sciences. PMID 28566214 DOI: 10.1016/J.Tibs.2017.05.004  0.684
2017 Ishikawa K, Makanae K, Iwasaki S, Ingolia NT, Moriya H. Post-Translational Dosage Compensation Buffers Genetic Perturbations to Stoichiometry of Protein Complexes. Plos Genetics. 13: e1006554. PMID 28121980 DOI: 10.1371/Journal.Pgen.1006554  0.65
2016 Iwasaki S, Ingolia NT. PROTEIN TRANSLATION. Seeing translation. Science (New York, N.Y.). 352: 1391-2. PMID 27313023 DOI: 10.1126/Science.Aag1039  0.671
2016 Iwasaki S, Floor SN, Ingolia NT. Rocaglates convert DEAD-box protein eIF4A into a sequence-selective translational repressor. Nature. PMID 27309803 DOI: 10.1038/Nature17978  0.721
2015 Werner A, Iwasaki S, McGourty CA, Medina-Ruiz S, Teerikorpi N, Fedrigo I, Ingolia NT, Rape M. Cell-fate determination by ubiquitin-dependent regulation of translation. Nature. 525: 523-7. PMID 26399832 DOI: 10.1038/Nature14978  0.641
2015 Iwasaki S, Sasaki HM, Sakaguchi Y, Suzuki T, Tadakuma H, Tomari Y. Defining fundamental steps in the assembly of the Drosophila RNAi enzyme complex. Nature. 521: 533-6. PMID 25822791 DOI: 10.1038/Nature14254  0.722
2013 Sasaki HM, Iwasaki S, Sakaguchi Y, Suzuki T, Tadakuma H, Tomari Y. 1P123 Defining fundamental steps in the assembly of Drosophila RNAi enzyme complex by TIRF microscopy(05A.Nucleic acid: Structure & Property,Poster,The 51st Annual Meeting of the Biophysical Society of Japan) Seibutsu Butsuri. 53: S126. DOI: 10.2142/Biophys.53.S126_2  0.583
2010 Kwak PB, Iwasaki S, Tomari Y. The microRNA pathway and cancer. Cancer Science. 101: 2309-15. PMID 20726859 DOI: 10.1111/J.1349-7006.2010.01683.X  0.663
2010 Iwasaki S, Kobayashi M, Yoda M, Sakaguchi Y, Katsuma S, Suzuki T, Tomari Y. Hsc70/Hsp90 chaperone machinery mediates ATP-dependent RISC loading of small RNA duplexes. Molecular Cell. 39: 292-9. PMID 20605501 DOI: 10.1016/J.Molcel.2010.05.015  0.726
2010 Yoda M, Kawamata T, Paroo Z, Ye X, Iwasaki S, Liu Q, Tomari Y. ATP-dependent human RISC assembly pathways. Nature Structural & Molecular Biology. 17: 17-23. PMID 19966796 DOI: 10.1038/Nsmb.1733  0.719
2009 Iwasaki S, Tomari Y. Argonaute-mediated translational repression (and activation). Fly. 3: 204-6. PMID 19556851 DOI: 10.4161/Fly.3.3.9025  0.689
2009 Iwasaki S, Kawamata T, Tomari Y. Drosophila argonaute1 and argonaute2 employ distinct mechanisms for translational repression. Molecular Cell. 34: 58-67. PMID 19268617 DOI: 10.1016/J.Molcel.2009.02.010  0.734
2008 Takeda A, Iwasaki S, Watanabe T, Utsumi M, Watanabe Y. The mechanism selecting the guide strand from small RNA duplexes is different among argonaute proteins. Plant & Cell Physiology. 49: 493-500. PMID 18344228 DOI: 10.1093/Pcp/Pcn043  0.394
2007 Iwasaki S, Takeda A, Motose H, Watanabe Y. Characterization of Arabidopsis decapping proteins AtDCP1 and AtDCP2, which are essential for post-embryonic development. Febs Letters. 581: 2455-9. PMID 17485080 DOI: 10.1016/J.Febslet.2007.04.051  0.411
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