A. Amunts - Related publications

Stockholm University, Stockholm, Stockholms län, Sweden 
biochemistry, structural biology, protein synthesis, organelles
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50 most relevant papers in past 60 days:
Year Citation  Score
2019 Mohammad F, Green R, Buskirk AR. A systematically-revised ribosome profiling method for bacteria reveals pauses at single-codon resolution. Elife. 8. PMID 30724162 DOI: 10.7554/eLife.42591   
2019 Lessard F, Brakier-Gingras L, Ferbeyre G. Ribosomal Proteins Control Tumor Suppressor Pathways in Response to Nucleolar Stress. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. e1800183. PMID 30706966 DOI: 10.1002/bies.201800183   
2019 Ferretti MB, Karbstein K. Does Functional Specialization of Ribosomes Really Exist? Rna (New York, N.Y.). PMID 30733326 DOI: 10.1261/rna.069823.118   
2019 Hei Z, Wu S, Liu Z, Wang J, Fang P. Retractile lysyl-tRNA synthetase-AIMP2 assembly in the human multi-aminoacyl-tRNA synthetase complex. The Journal of Biological Chemistry. PMID 30733335 DOI: 10.1074/jbc.RA118.006356   
2019 Emmott E, Jovanovic M, Slavov N. Ribosome Stoichiometry: From Form to Function. Trends in Biochemical Sciences. 44: 95-109. PMID 30473427 DOI: 10.1016/j.tibs.2018.10.009   
2019 Bárria C, Domingues S, Arraiano CM. Pneumococcal RNase R globally impacts protein synthesis by regulating the amount of actively translating ribosomes. Rna Biology. PMID 30608212 DOI: 10.1080/15476286.2018.1564616   
2019 Pellegrino S, Meyer M, Könst ZA, Holm M, Voora VK, Kashinskaya D, Zanette C, Mobley DL, Yusupova G, Vanderwal CD, Blanchard SC, Yusupov M. Understanding the role of intermolecular interactions between lissoclimides and the eukaryotic ribosome. Nucleic Acids Research. PMID 30759226 DOI: 10.1093/nar/gkz053   
2019 Flygaard RK, Malacrida B, Kiely P, Jenner LB. Purification and characterization of native human elongation factor 2. Protein Expression and Purification. PMID 30742898 DOI: 10.1016/j.pep.2019.02.005   
2019 Wu CC, Zinshteyn B, Wehner KA, Green R. High-Resolution Ribosome Profiling Defines Discrete Ribosome Elongation States and Translational Regulation during Cellular Stress. Molecular Cell. PMID 30686592 DOI: 10.1016/j.molcel.2018.12.009   
2019 Li PC, Li K, Wang J, Zhao CZ, Zhao SZ, Hou L, Xia H, Ma CL, Wang XJ. The AAA-ATPase MIDASIN 1 Functions in Ribosome Biogenesis and Is Essential for Embryo and Root Development. Plant Physiology. PMID 30755475 DOI: 10.1104/pp.18.01225   
2019 Bou-Nader C, Barraud P, Pecqueur L, Pérez J, Velours C, Shepard W, Fontecave M, Tisné C, Hamdane D. Molecular basis for transfer RNA recognition by the double-stranded RNA-binding domain of human dihydrouridine synthase 2. Nucleic Acids Research. PMID 30605527 DOI: 10.1093/nar/gky1302   
2019 Knorr AG, Schmidt C, Tesina P, Berninghausen O, Becker T, Beatrix B, Beckmann R. Ribosome-NatA architecture reveals that rRNA expansion segments coordinate N-terminal acetylation. Nature Structural & Molecular Biology. 26: 35-39. PMID 30559462 DOI: 10.1038/s41594-018-0165-y   
2019 Song W, Joo M, Yeom JH, Shin E, Lee M, Choi HK, Hwang J, Kim YI, Seo R, Lee JE, Moore CJ, Kim YH, Eyun SI, Hahn Y, Bae J, et al. Divergent rRNAs as regulators of gene expression at the ribosome level. Nature Microbiology. PMID 30718849 DOI: 10.1038/s41564-018-0341-1   
2019 van der Knaap MS, Bugiani M, Mendes MI, Riley LG, Smith DEC, Rudinger-Thirion J, Frugier M, Breur M, Crawford J, van Gaalen J, Schouten M, Willems M, Waisfisz Q, Mau-Them FT, Rodenburg RJ, et al. Biallelic variants in and cause deafness and (ovario)leukodystrophy. Neurology. PMID 30737337 DOI: 10.1212/WNL.0000000000007098   
2019 Fricker R, Brogli R, Luidalepp H, Wyss L, Fasnacht M, Joss O, Zywicki M, Helm M, Schneider A, Cristodero M, Polacek N. A tRNA half modulates translation as stress response in Trypanosoma brucei. Nature Communications. 10: 118. PMID 30631057 DOI: 10.1038/s41467-018-07949-6   
2019 Noutahi E, Calderon V, Blanchette M, El-Mabrouk N, Lang BF. Rapid genetic code evolution in green algal mitochondrial genomes. Molecular Biology and Evolution. PMID 30698742 DOI: 10.1093/molbev/msz016   
2019 Koripella RK, Sharma MR, Haque ME, Risteff P, Spremulli LL, Agrawal RK. Structure of Human Mitochondrial Translation Initiation Factor 3 Bound to the Small Ribosomal Subunit. Iscience. 12: 76-86. PMID 30677741 DOI: 10.1016/j.isci.2018.12.030   
2019 Svetlov MS, Plessa E, Chen CW, Bougas A, Krokidis MG, Dinos GP, Polikanov Y. High-resolution crystal structures of ribosome-bound chloramphenicol and erythromycin provide the ultimate basis for their competition. Rna (New York, N.Y.). PMID 30733327 DOI: 10.1261/rna.069260.118   
2019 Lin TY, Abbassi NEH, Zakrzewski K, Chramiec-Głąbik A, Jemioła-Rzemińska M, Różycki J, Glatt S. The Elongator subunit Elp3 is a non-canonical tRNA acetyltransferase. Nature Communications. 10: 625. PMID 30733442 DOI: 10.1038/s41467-019-08579-2   
2019 Jin D, Musier-Forsyth K. Role of Host tRNAs and Aminoacyl-tRNA Synthetases in Retroviral Replication. The Journal of Biological Chemistry. PMID 30700559 DOI: 10.1074/jbc.REV118.002957   
2019 Zhao J, Qin B, Nikolay R, Spahn CMT, Zhang G. Translatomics: The Global View of Translation. International Journal of Molecular Sciences. 20. PMID 30626072 DOI: 10.3390/ijms20010212   
2019 Lant JT, Berg MD, Heinemann IU, Brandl CJ, O'Donoghue P. Pathways to disease from natural variations in human cytoplasmic tRNAs. The Journal of Biological Chemistry. PMID 30643023 DOI: 10.1074/jbc.REV118.002982   
2019 Yu N, Jora M, Solivio B, Thakur P, Acevedo-Rocha CG, Randau L, de Crécy-Lagard V, Addepalli B, Limbach PA. Transfer RNA Modification Profiles and Codon Decoding Strategies in . Journal of Bacteriology. PMID 30745370 DOI: 10.1128/JB.00690-18   
2019 Nguyen HA, Hoffer ED, Dunham CM. Importance of tRNA anticodon loop modification and a conserved, noncanonical anticodon stem pairing in tRNA for decoding. The Journal of Biological Chemistry. PMID 30782843 DOI: 10.1074/jbc.RA119.007410   
2019 Feng P, Xu Z, Yang H, Lv H, Ding H, Liu L. Identification of D Modification Sites by Integrating Heterogeneous Features in . Molecules (Basel, Switzerland). 24. PMID 30678171 DOI: 10.3390/molecules24030380   
2019 Lin L, Cui P, Qiu Z, Wang M, Yu Y, Wang J, Sun Q, Zhao H. The mitochondrial tRNA 5587T>C and tRNA 12280A>G mutations may be associated with hypertension in a Chinese family. Experimental and Therapeutic Medicine. 17: 1855-1862. PMID 30783460 DOI: 10.3892/etm.2018.7143   
2019 Miyoshi Y, Ohtsuki T, Kashida H, Asanuma H, Watanabe K. In-stem molecular beacon targeted to a 5'-region of tRNA inclusive of the D arm that detects mature tRNA with high sensitivity. Plos One. 14: e0211505. PMID 30695081 DOI: 10.1371/journal.pone.0211505   
2019 Frohlich KM, Weintraub S, Bell JT, Todd GC, Väre VY, Schneider R, Kloos ZA, Tabe ES, Cantara WA, Stark C, Onwuanaibe U, Duffy BC, Basanta-Sanchez M, Kitchen DB, McDonough K, et al. Discovery of small molecule antibiotics against a unique tRNA-mediated regulation of transcription in Gram-positive bacteria. Chemmedchem. PMID 30707489 DOI: 10.1002/cmdc.201800744   
2019 Ero R, Kumar V, Su W, Gao YG. Ribosome protection by ABC-F proteins - molecular mechanism and potential drug design. Protein Science : a Publication of the Protein Society. PMID 30746819 DOI: 10.1002/pro.3589   
2019 Grobe S, Doberenz S, Ferreira K, Krueger J, Brönstrup M, Kaever V, Häußler S. Identification and quantification of (t)RNA modifications in Pseudomonas aeruginosa by liquid chromatography-tandem mass spectrometry. Chembiochem : a European Journal of Chemical Biology. PMID 30644616 DOI: 10.1002/cbic.201800741   
2019 Hyeon DY, Kim JH, Ahn TJ, Cho Y, Hwang D, Kim S. Evolution of the multi-tRNA synthetase complex and its role in cancer. The Journal of Biological Chemistry. PMID 30782841 DOI: 10.1074/jbc.REV118.002958   
2019 Roura Frigolé H, Camacho N, Castellví Coma M, Fernández-Lozano C, García-Lema J, Rafels-Ybern À, Canals A, Coll M, Ribas de Pouplana L. tRNA deamination by ADAT requires substrate-specific recognition mechanisms and can be inhibited by tRFs. Rna (New York, N.Y.). PMID 30737359 DOI: 10.1261/rna.068189.118   
2019 Bhakta S, Akbar S, Sengupta J. Cryo-EM Structures Reveal Relocalization of MetAP in the Presence of Other Protein Biogenesis Factors at the Ribosomal Tunnel Exit. Journal of Molecular Biology. PMID 30753870 DOI: 10.1016/j.jmb.2019.02.002   
2019 Porokhovnik L, Gerton JL. Ribosomal DNA-connecting ribosome biogenesis and chromosome biology. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. PMID 30663012 DOI: 10.1007/s10577-018-9601-4   
2019 de Crécy-Lagard V, Boccaletto P, Mangleburg CG, Sharma P, Lowe TM, Leidel SA, Bujnicki JM. Matching tRNA modifications in humans to their known and predicted enzymes. Nucleic Acids Research. PMID 30698754 DOI: 10.1093/nar/gkz011   
2019 Yang J, Hong J, Luo L, Liu K, Meng C, Ji ZL, Lin D. Biophysical characterization and ligand-binding properties of the elongation factor Tu from Mycobacterium tuberculosis. Acta Biochimica Et Biophysica Sinica. PMID 30615070 DOI: 10.1093/abbs/gmy164   
2019 Friedman J, Smith DE, Issa MY, Stanley V, Wang R, Mendes MI, Wright MS, Wigby K, Hildreth A, Crawford JR, Koehler AE, Chowdhury S, Nahas S, Zhai L, Xu Z, et al. Biallelic mutations in valyl-tRNA synthetase gene VARS are associated with a progressive neurodevelopmental epileptic encephalopathy. Nature Communications. 10: 707. PMID 30755602 DOI: 10.1038/s41467-018-07067-3   
2019 Jian FF, Liu E, Li Z. Structural and functional study for tRNA cleavage by Glycine o-phenanthroline Cu complex, [CuCl(phen)(gly)]∙4HO. Biochemical and Biophysical Research Communications. 509: 354-358. PMID 30587337 DOI: 10.1016/j.bbrc.2018.12.138   
2019 Mohanta TK, Khan AL, Hashem A, Allah EFA, Yadav D, Al-Harrasi A. Genomic and evolutionary aspects of chloroplast tRNA in monocot plants. Bmc Plant Biology. 19: 39. PMID 30669974 DOI: 10.1186/s12870-018-1625-6   
2019 Figueiredo VC, McCarthy JJ. Regulation of Ribosome Biogenesis in Skeletal Muscle Hypertrophy. Physiology (Bethesda, Md.). 34: 30-42. PMID 30540235 DOI: 10.1152/physiol.00034.2018   
2019 Zhou Z, Sun B, Huang S, Jia W, Yu D. The tRNA-associated dysregulation in diabetes mellitus. Metabolism: Clinical and Experimental. PMID 30711570 DOI: 10.1016/j.metabol.2019.01.017   
2019 Lueck JD, Yoon JS, Perales-Puchalt A, Mackey AL, Infield DT, Behlke MA, Pope MR, Weiner DB, Skach WR, McCray PB, Ahern CA. Engineered transfer RNAs for suppression of premature termination codons. Nature Communications. 10: 822. PMID 30778053 DOI: 10.1038/s41467-019-08329-4   
2019 Müller M, Legrand C, Tuorto F, Kelly VP, Atlasi Y, Lyko F, Ehrenhofer-Murray AE. Queuine links translational control in eukaryotes to a micronutrient from bacteria. Nucleic Acids Research. PMID 30715423 DOI: 10.1093/nar/gkz063   
2019 Guedes-Monteiro RF, Franco LVR, Moda BS, Tzagoloff A, Barros MH. 5' processing of Saccharomyces cerevisiae mitochondrial tRNAs requires expression of multiple genes. Biochimica Et Biophysica Acta. Molecular Cell Research. PMID 30759361 DOI: 10.1016/j.bbamcr.2019.02.002   
2019 Yan LL, Zaher HS. Ubiquitin-a beacon for all during quality control on the ribosome. The Embo Journal. PMID 30770343 DOI: 10.15252/embj.2019101633   
2019 Reid NE, Ngou JS, Joyce PBM. Schizosaccharomyces pombe contains separate CC- and A-adding tRNA nucleotidyltransferases. Biochemical and Biophysical Research Communications. 508: 785-790. PMID 30528393 DOI: 10.1016/j.bbrc.2018.11.131   
2019 González-Serrano LE, Chihade JW, Sissler M. When a common biological role does not imply common disease outcomes: Disparate pathology linked to human mitochondrial aminoacyl-tRNA synthetases. The Journal of Biological Chemistry. PMID 30647134 DOI: 10.1074/jbc.REV118.002953   
2019 Carneiro RL, Requião RD, Rossetto S, Domitrovic T, Palhano FL. Codon stabilization coefficient as a metric to gain insights into mRNA stability and codon bias and their relationships with translation. Nucleic Acids Research. PMID 30698781 DOI: 10.1093/nar/gkz033   
2019 Fujisawa A, Toki R, Miyake H, Shoji T, Doi H, Hayashi H, Hanabusa R, Mutsuro-Aoki H, Umehara T, Ando T, Noguchi H, Voet A, Park SY, Tamura K. Glycyl-tRNA synthetase from Nanoarchaeum equitans: The first crystal structure of archaeal GlyRS and analysis of its tRNA glycylation. Biochemical and Biophysical Research Communications. PMID 30771900 DOI: 10.1016/j.bbrc.2019.01.142   
2019 Siekierska A, Stamberger H, Deconinck T, Oprescu SN, Partoens M, Zhang Y, Sourbron J, Adriaenssens E, Mullen P, Wiencek P, Hardies K, Lee JS, Giong HK, Distelmaier F, Elpeleg O, ... , ... , et al. Biallelic VARS variants cause developmental encephalopathy with microcephaly that is recapitulated in vars knockout zebrafish. Nature Communications. 10: 708. PMID 30755616 DOI: 10.1038/s41467-018-07953-w