Yingming Zhao - Publications

Affiliations: 
University of Chicago, Chicago, IL 

65 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Liu H, Yue J, Huang H, Gou X, Chen SY, Zhao Y, Wu X. Correction: Regulation of focal adhesion dynamics and cell motility by the EB2 and Hax1 protein complex. The Journal of Biological Chemistry. 294: 2948. PMID 30796176 DOI: 10.1074/jbc.AAC119.007825  0.6
2018 Shiota H, Barral S, Buchou T, Tan M, Couté Y, Charbonnier G, Reynoird N, Boussouar F, Gérard M, Zhu M, Bargier L, Puthier D, Chuffart F, Bourova-Flin E, Picaud S, ... ... Zhao Y, et al. Nut Directs p300-Dependent, Genome-Wide H4 Hyperacetylation in Male Germ Cells. Cell Reports. 24: 3477-3487.e6. PMID 30257209 DOI: 10.1016/j.celrep.2018.08.069  0.36
2018 Huang H, Zhang D, Wang Y, Perez-Neut M, Han Z, Zheng YG, Hao Q, Zhao Y. Lysine benzoylation is a histone mark regulated by SIRT2. Nature Communications. 9: 3374. PMID 30154464 DOI: 10.1038/s41467-018-05567-w  0.6
2018 Huang H, Wang DL, Zhao Y. Quantitative Crotonylome Analysis Expands the Roles of p300 in the Regulation of Lysine Crotonylation Pathway. Proteomics. e1700230. PMID 29932303 DOI: 10.1002/pmic.201700230  0.6
2018 Huang H, Tang S, Ji M, Tang Z, Shimada M, Liu X, Qi S, Locasale JW, Roeder RG, Zhao Y, Li X. p300-Mediated Lysine 2-Hydroxyisobutyrylation Regulates Glycolysis. Molecular Cell. 70: 984. PMID 29883613 DOI: 10.1016/j.molcel.2018.05.035  0.6
2018 Huang H, Tang S, Ji M, Tang Z, Shimada M, Liu X, Qi S, Locasale JW, Roeder RG, Zhao Y, Li X. EP300-Mediated Lysine 2-Hydroxyisobutyrylation Regulates Glycolysis. Molecular Cell. 70: 663-678.e6. PMID 29775581 DOI: 10.1016/j.molcel.2018.04.011  0.6
2018 Sabari BR, Tang Z, Huang H, Yong-Gonzalez V, Molina H, Kong HE, Dai L, Shimada M, Cross JR, Zhao Y, Roeder RG, Allis CD. Intracellular Crotonyl-CoA Stimulates Transcription through p300-Catalyzed Histone Crotonylation. Molecular Cell. 69: 533. PMID 29395068 DOI: 10.1016/j.molcel.2018.01.013  0.6
2018 Han Z, Wu H, Kim S, Yang X, Li Q, Huang H, Cai H, Bartlett MG, Dong A, Zeng H, Brown PJ, Yang X, Arrowsmith CH, Zhao Y, Zheng YG. Revealing the Protein Propionylation Activity of the Histone Acetyltransferase Males absent on the first (MOF). The Journal of Biological Chemistry. PMID 29321206 DOI: 10.1074/jbc.RA117.000529  0.6
2017 Wu JY, Xiang S, Zhang M, Fang B, Huang H, Kwon OK, Zhao Y, Yang Z, Bai W, Bepler G, Zhang XM. Histone deacetylase 6 (HDAC6) deacetylates extracellular signal-regulated kinase 1 (ERK1) and thereby stimulates ERK1 activity. The Journal of Biological Chemistry. PMID 29259132 DOI: 10.1074/jbc.M117.795955  0.6
2017 Huang H, Luo Z, Qi S, Huang J, Xu P, Wang X, Gao L, Li F, Wang J, Zhao W, Gu W, Chen Z, Dai L, Dai J, Zhao Y. Landscape of the regulatory elements for lysine 2-hydroxyisobutyrylation pathway. Cell Research. PMID 29192674 DOI: 10.1038/cr.2017.149  0.6
2017 Huang J, Luo Z, Ying W, Cao Q, Huang H, Dong J, Wu Q, Zhao Y, Qian X, Dai J. 2-Hydroxyisobutyrylation on histone H4K8 is regulated by glucose homeostasis in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. PMID 28768809 DOI: 10.1073/pnas.1700796114  0.6
2017 Liu X, Wei W, Liu Y, Yang X, Wu J, Zhang Y, Zhang Q, Shi T, Du JX, Zhao Y, Lei M, Zhou JQ, Li J, Wong J. MOF as an evolutionarily conserved histone crotonyltransferase and transcriptional activation by histone acetyltransferase-deficient and crotonyltransferase-competent CBP/p300. Cell Discovery. 3: 17016. PMID 28580166 DOI: 10.1038/celldisc.2017.16  0.56
2016 Sabari BR, Zhang D, Allis CD, Zhao Y. Metabolic regulation of gene expression through histone acylations. Nature Reviews. Molecular Cell Biology. PMID 27924077 DOI: 10.1038/nrm.2016.140  0.44
2016 Kaczmarska Z, Ortega E, Goudarzi A, Huang H, Kim S, Márquez JA, Zhao Y, Khochbin S, Panne D. Structure of p300 in complex with acyl-CoA variants. Nature Chemical Biology. PMID 27820805 DOI: 10.1038/nchembio.2217  0.6
2016 Aramsangtienchai P, Spiegelman NA, He B, Miller SP, Dai L, Zhao Y, Lin H. HDAC8 catalyzes the hydrolysis of long chain fatty acyl lysine. Acs Chemical Biology. PMID 27459069 DOI: 10.1021/acschembio.6b00396  0.36
2016 Qian L, Nie L, Chen M, Liu P, Zhu J, Zhai L, Tao SC, Cheng Z, Zhao Y, Tan M. Global Profiling of Protein Lysine Malonylation in Escherichia coli Reveals Its Role in Energy Metabolism. Journal of Proteome Research. PMID 27183143 DOI: 10.1021/acs.jproteome.6b00264  0.36
2016 Xie Z, Zhang D, Chung D, Tang Z, Huang H, Dai L, Qi S, Li J, Colak G, Chen Y, Xia C, Peng C, Ruan H, Kirkey M, Wang D, ... Zhao Y, et al. Metabolic Regulation of Gene Expression by Histone Lysine β-Hydroxybutyrylation. Molecular Cell. 62: 194-206. PMID 27105115 DOI: 10.1016/j.molcel.2016.03.036  0.36
2016 Li Y, Sabari BR, Panchenko T, Wen H, Zhao D, Guan H, Wan L, Huang H, Tang Z, Zhao Y, Roeder RG, Shi X, Allis CD, Li H. Molecular Coupling of Histone Crotonylation and Active Transcription by AF9 YEATS Domain. Molecular Cell. 62: 181-193. PMID 27105114 DOI: 10.1016/j.molcel.2016.03.028  0.32
2016 Liu K, Li F, Han H, Chen Y, Mao Z, Luo J, Zhao Y, Zheng B, Gu W, Zhao W. Parkin Regulates the Activity of Pyruvate Kinase M2. The Journal of Biological Chemistry. PMID 26975375 DOI: 10.1074/jbc.M115.703066  0.36
2016 Washburn MP, Zhao Y, Garcia BA. Reshaping the chromatin and epigenetic landscapes with quantitative mass spectrometry. Molecular & Cellular Proteomics : McP. PMID 26814188 DOI: 10.1074/mcp.E116.058602  0.32
2016 Respuela P, Nikolić M, Tan M, Frommolt P, Zhao Y, Wysocka J, Rada-Iglesias A. Foxd3 Promotes Exit from Naive Pluripotency through Enhancer Decommissioning and Inhibits Germline Specification. Cell Stem Cell. 18: 118-133. PMID 26748758 DOI: 10.1016/j.stem.2015.09.010  0.32
2015 Martínez-Reyes I, Diebold LP, Kong H, Schieber M, Huang H, Hensley CT, Mehta MM, Wang T, Santos JH, Woychik R, Dufour E, Spelbrink JN, Weinberg SE, Zhao Y, DeBerardinis RJ, et al. TCA Cycle and Mitochondrial Membrane Potential Are Necessary for Diverse Biological Functions. Molecular Cell. PMID 26725009 DOI: 10.1016/j.molcel.2015.12.002  0.32
2015 Liu H, Yue J, Huang H, Gou X, Chen SY, Zhao Y, Wu X. Regulation of Focal Adhesion Dynamics and Cell Motility by EB2 and Hax1 Complex. The Journal of Biological Chemistry. PMID 26527684 DOI: 10.1074/jbc.M115.671743  0.32
2015 Morozumi Y, Boussouar F, Tan M, Chaikuad A, Jamshidikia M, Colak G, He H, Nie L, Petosa C, de Dieuleveult M, Curtet S, Vitte AL, Rabatel C, Debernardi A, Cosset FL, ... ... Zhao Y, et al. Atad2 is a generalist facilitator of chromatin dynamics in embryonic stem cells. Journal of Molecular Cell Biology. PMID 26459632 DOI: 10.1093/jmcb/mjv060  0.36
2015 Cluntun AA, Huang H, Dai L, Liu X, Zhao Y, Locasale JW. The rate of glycolysis quantitatively mediates specific histone acetylation sites. Cancer & Metabolism. 3: 10. PMID 26401273 DOI: 10.1186/s40170-015-0135-3  0.6
2015 Zhao Y, Garcia BA. Comprehensive Catalog of Currently Documented Histone Modifications. Cold Spring Harbor Perspectives in Biology. 7: a025064. PMID 26330523 DOI: 10.1101/cshperspect.a025064  0.36
2015 Colak G, Pougovkina O, Dai L, Tan M, Te Brinke H, Huang H, Cheng Z, Park J, Wan X, Liu X, Yue WW, Wanders RJ, Locasale JW, Lombard DB, de Boer VC, ... Zhao Y, et al. Proteomic and biochemical studies of lysine malonylation suggests its malonic aciduria-associated regulatory role in mitochondrial function and fatty acid oxidation. Molecular & Cellular Proteomics : McP. PMID 26320211 DOI: 10.1074/mcp.M115.048850  0.6
2015 Torres MJ, Pandita RK, Kulak O, Kumar R, Formstecher E, Horikoshi N, Mujoo K, Hunt CR, Zhao Y, Lum L, Zaman A, Yeaman C, White MA, Pandita TK. Role of the Exocyst Complex Component Sec6/8 in Genomic Stability. Molecular and Cellular Biology. 35: 3633-45. PMID 26283729 DOI: 10.1128/MCB.00768-15  0.32
2015 Sabari BR, Tang Z, Huang H, Yong-Gonzalez V, Molina H, Kong HE, Dai L, Shimada M, Cross JR, Zhao Y, Roeder RG, Allis CD. Intracellular crotonyl-CoA stimulates transcription through p300-catalyzed histone crotonylation. Molecular Cell. 58: 203-15. PMID 25818647 DOI: 10.1016/j.molcel.2015.02.029  0.36
2015 Huang H, Lin S, Garcia BA, Zhao Y. Quantitative proteomic analysis of histone modifications. Chemical Reviews. 115: 2376-418. PMID 25688442 DOI: 10.1021/cr500491u  0.36
2014 Huang H, Sabari BR, Garcia BA, Allis CD, Zhao Y. SnapShot: histone modifications. Cell. 159: 458-458.e1. PMID 25303536 DOI: 10.1016/j.cell.2014.09.037  0.32
2014 Xu G, Wang J, Wu Z, Qian L, Dai L, Wan X, Tan M, Zhao Y, Wu Y. SAHA regulates histone acetylation, Butyrylation, and protein expression in neuroblastoma. Journal of Proteome Research. 13: 4211-9. PMID 25160476 DOI: 10.1021/pr500497e  0.56
2014 Tan M, Peng C, Anderson KA, Chhoy P, Xie Z, Dai L, Park J, Chen Y, Huang H, Zhang Y, Ro J, Wagner GR, Green MF, Madsen AS, Schmiesing J, ... ... Zhao Y, et al. Lysine glutarylation is a protein posttranslational modification regulated by SIRT5. Cell Metabolism. 19: 605-17. PMID 24703693 DOI: 10.1016/j.cmet.2014.03.014  0.36
2014 Dai L, Peng C, Montellier E, Lu Z, Chen Y, Ishii H, Debernardi A, Buchou T, Rousseaux S, Jin F, Sabari BR, Deng Z, Allis CD, Ren B, Khochbin S, ... Zhao Y, et al. Lysine 2-hydroxyisobutyrylation is a widely distributed active histone mark. Nature Chemical Biology. 10: 365-70. PMID 24681537 DOI: 10.1038/nchembio.1497  0.36
2014 Kazgan N, Metukuri MR, Purushotham A, Lu J, Rao A, Lee S, Pratt-Hyatt M, Lickteig A, Csanaky IL, Zhao Y, Dawson PA, Li X. Intestine-specific deletion of SIRT1 in mice impairs DCoH2-HNF-1α-FXR signaling and alters systemic bile acid homeostasis. Gastroenterology. 146: 1006-16. PMID 24389307 DOI: 10.1053/j.gastro.2013.12.029  0.36
2013 Colak G, Xie Z, Zhu AY, Dai L, Lu Z, Zhang Y, Wan X, Chen Y, Cha YH, Lin H, Zhao Y, Tan M. Identification of lysine succinylation substrates and the succinylation regulatory enzyme CobB in Escherichia coli. Molecular & Cellular Proteomics : McP. 12: 3509-20. PMID 24176774 DOI: 10.1074/mcp.M113.031567  0.36
2013 Hattori T, Taft JM, Swist KM, Luo H, Witt H, Slattery M, Koide A, Ruthenburg AJ, Krajewski K, Strahl BD, White KP, Farnham PJ, Zhao Y, Koide S. Recombinant antibodies to histone post-translational modifications. Nature Methods. 10: 992-5. PMID 23955773 DOI: 10.1038/nmeth.2605  0.36
2013 Montellier E, Boussouar F, Rousseaux S, Zhang K, Buchou T, Fenaille F, Shiota H, Debernardi A, Héry P, Curtet S, Jamshidikia M, Barral S, Holota H, Bergon A, Lopez F, ... ... Zhao Y, et al. Chromatin-to-nucleoprotamine transition is controlled by the histone H2B variant TH2B. Genes & Development. 27: 1680-92. PMID 23884607 DOI: 10.1101/gad.220095.113  0.36
2013 Dobbin MM, Madabhushi R, Pan L, Chen Y, Kim D, Gao J, Ahanonu B, Pao PC, Qiu Y, Zhao Y, Tsai LH. SIRT1 collaborates with ATM and HDAC1 to maintain genomic stability in neurons. Nature Neuroscience. 16: 1008-15. PMID 23852118 DOI: 10.1038/nn.3460  0.36
2013 Park J, Chen Y, Tishkoff DX, Peng C, Tan M, Dai L, Xie Z, Zhang Y, Zwaans BM, Skinner ME, Lombard DB, Zhao Y. SIRT5-mediated lysine desuccinylation impacts diverse metabolic pathways. Molecular Cell. 50: 919-30. PMID 23806337 DOI: 10.1016/j.molcel.2013.06.001  0.56
2013 Chen B, Tao Z, Zhao Y, Chen H, Yong Y, Liu X, Wang H, Wu Z, Yang Z, Yuan L. Catheter-based intramyocardial delivery (NavX) of adenovirus achieves safe and accurate gene transfer in pigs. Plos One. 8: e53007. PMID 23301013 DOI: 10.1371/journal.pone.0053007  0.56
2013 Lee S, Tan M, Dai L, Kwon OK, Yang JS, Zhao Y, Chen Y. MS/MS of synthetic peptide is not sufficient to confirm new types of protein modifications. Journal of Proteome Research. 12: 1007-13. PMID 23268713 DOI: 10.1021/pr300667e  0.56
2012 Qiang L, Wang L, Kon N, Zhao W, Lee S, Zhang Y, Rosenbaum M, Zhao Y, Gu W, Farmer SR, Accili D. Brown remodeling of white adipose tissue by SirT1-dependent deacetylation of Pparγ. Cell. 150: 620-32. PMID 22863012 DOI: 10.1016/j.cell.2012.06.027  0.36
2012 Choi MC, Cohen TJ, Barrientos T, Wang B, Li M, Simmons BJ, Yang JS, Cox GA, Zhao Y, Yao TP. A direct HDAC4-MAP kinase crosstalk activates muscle atrophy program. Molecular Cell. 47: 122-32. PMID 22658415 DOI: 10.1016/j.molcel.2012.04.025  0.36
2012 Xie Z, Dai J, Dai L, Tan M, Cheng Z, Wu Y, Boeke JD, Zhao Y. Lysine succinylation and lysine malonylation in histones. Molecular & Cellular Proteomics : McP. 11: 100-7. PMID 22389435 DOI: 10.1074/mcp.M111.015875  0.36
2012 Montellier E, Rousseaux S, Zhao Y, Khochbin S. Histone crotonylation specifically marks the haploid male germ cell gene expression program: post-meiotic male-specific gene expression. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 34: 187-93. PMID 22170506 DOI: 10.1002/bies.201100141  0.36
2011 Tan M, Luo H, Lee S, Jin F, Yang JS, Montellier E, Buchou T, Cheng Z, Rousseaux S, Rajagopal N, Lu Z, Ye Z, Zhu Q, Wysocka J, Ye Y, ... ... Zhao Y, et al. Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification. Cell. 146: 1016-28. PMID 21925322 DOI: 10.1016/j.cell.2011.08.008  0.36
2011 Peng C, Lu Z, Xie Z, Cheng Z, Chen Y, Tan M, Luo H, Zhang Y, He W, Yang K, Zwaans BM, Tishkoff D, Ho L, Lombard D, He TC, ... ... Zhao Y, et al. The first identification of lysine malonylation substrates and its regulatory enzyme. Molecular & Cellular Proteomics : McP. 10: M111.012658. PMID 21908771 DOI: 10.1074/mcp.M111.012658  0.36
2011 Lu JY, Lin YY, Sheu JC, Wu JT, Lee FJ, Chen Y, Lin MI, Chiang FT, Tai TY, Berger SL, Zhao Y, Tsai KS, Zhu H, Chuang LM, Boeke JD. Acetylation of yeast AMPK controls intrinsic aging independently of caloric restriction. Cell. 146: 969-79. PMID 21906795 DOI: 10.1016/j.cell.2011.07.044  0.36
2011 Chu CW, Hou F, Zhang J, Phu L, Loktev AV, Kirkpatrick DS, Jackson PK, Zhao Y, Zou H. A novel acetylation of β-tubulin by San modulates microtubule polymerization via down-regulating tubulin incorporation. Molecular Biology of the Cell. 22: 448-56. PMID 21177827 DOI: 10.1091/mbc.E10-03-0203  0.36
2011 Samant SA, Courson DS, Sundaresan NR, Pillai VB, Tan M, Zhao Y, Shroff SG, Rock RS, Gupta MP. HDAC3-dependent reversible lysine acetylation of cardiac myosin heavy chain isoforms modulates their enzymatic and motor activity. The Journal of Biological Chemistry. 286: 5567-77. PMID 21177250 DOI: 10.1074/jbc.M110.163865  0.36
2011 Zhang Z, Tan M, Xie Z, Dai L, Chen Y, Zhao Y. Identification of lysine succinylation as a new post-translational modification. Nature Chemical Biology. 7: 58-63. PMID 21151122 DOI: 10.1038/nchembio.495  0.56
2011 Song H, Li CW, Labaff AM, Lim SO, Li LY, Kan SF, Chen Y, Zhang K, Lang J, Xie X, Wang Y, Huo LF, Hsu SC, Chen X, Zhao Y, et al. Acetylation of EGF receptor contributes to tumor cell resistance to histone deacetylase inhibitors Biochemical and Biophysical Research Communications. 404: 68-73. PMID 21094134 DOI: 10.1016/j.bbrc.2010.11.064  0.36
2011 He BC, Gao JL, Zhang BQ, Luo Q, Shi Q, Kim SH, Huang E, Gao Y, Yang K, Wagner ER, Wang L, Tang N, Luo J, Liu X, Li M, ... ... Zhao Y, et al. Tetrandrine inhibits Wnt/β-catenin signaling and suppresses tumor growth of human colorectal cancer. Molecular Pharmacology. 79: 211-9. PMID 20978119 DOI: 10.1124/mol.110.068668  0.56
2010 Erzurum S, Rounds SI, Stevens T, Aldred M, Aliotta J, Archer SL, Asosingh K, Balaban R, Bauer N, Bhattacharya J, Bogaard H, Choudhary G, Dorn GW, Dweik R, Fagan K, ... ... Zhao Y, et al. Strategic plan for lung vascular research: An NHLBI-ORDR Workshop Report. American Journal of Respiratory and Critical Care Medicine. 182: 1554-62. PMID 20833821 DOI: 10.1164/rccm.201006-0869WS  0.36
2010 Bajpai R, Chen DA, Rada-Iglesias A, Zhang J, Xiong Y, Helms J, Chang CP, Zhao Y, Swigut T, Wysocka J. CHD7 cooperates with PBAF to control multipotent neural crest formation. Nature. 463: 958-62. PMID 20130577 DOI: 10.1038/nature08733  0.36
2010 Zeng SX, Li Y, Jin Y, Zhang Q, Keller DM, McQuaw CM, Barklis E, Stone S, Hoatlin M, Zhao Y, Lu H. Structure-specific recognition protein 1 facilitates microtubule growth and bundling required for mitosis. Molecular and Cellular Biology. 30: 935-47. PMID 19995907 DOI: 10.1128/MCB.01379-09  0.36
2009 Rosse C, Formstecher E, Boeckeler K, Zhao Y, Kremerskothen J, White MD, Camonis JH, Parker PJ. An aPKC-exocyst complex controls paxillin phosphorylation and migration through localised JNK1 activation. Plos Biology. 7: e1000235. PMID 19885391 DOI: 10.1371/journal.pbio.1000235  0.36
2009 Basu A, Rose KL, Zhang J, Beavis RC, Ueberheide B, Garcia BA, Chait B, Zhao Y, Hunt DF, Segal E, Allis CD, Hake SB. Proteome-wide prediction of acetylation substrates. Proceedings of the National Academy of Sciences of the United States of America. 106: 13785-90. PMID 19666589 DOI: 10.1073/pnas.0906801106  0.36
2009 Lin YY, Lu JY, Zhang J, Walter W, Dang W, Wan J, Tao SC, Qian J, Zhao Y, Boeke JD, Berger SL, Zhu H. Protein acetylation microarray reveals that NuA4 controls key metabolic target regulating gluconeogenesis. Cell. 136: 1073-84. PMID 19303850 DOI: 10.1016/j.cell.2009.01.033  0.36
2009 Chen Y, Chen W, Cobb MH, Zhao Y. PTMap--a sequence alignment software for unrestricted, accurate, and full-spectrum identification of post-translational modification sites. Proceedings of the National Academy of Sciences of the United States of America. 106: 761-6. PMID 19136633 DOI: 10.1073/pnas.0811739106  0.36
2009 Chen W, Chen Y, Xu BE, Juang YC, Stippec S, Zhao Y, Cobb MH. Regulation of a third conserved phosphorylation site in SGK1. The Journal of Biological Chemistry. 284: 3453-60. PMID 19068477 DOI: 10.1074/jbc.M807502200  0.36
2009 Cheng Z, Tang Y, Chen Y, Kim S, Liu H, Li SS, Gu W, Zhao Y. Molecular characterization of propionyllysines in non-histone proteins. Molecular & Cellular Proteomics : McP. 8: 45-52. PMID 18753126 DOI: 10.1074/mcp.M800224-MCP200  0.36
2009 Zhang J, Sprung R, Pei J, Tan X, Kim S, Zhu H, Liu CF, Grishin NV, Zhao Y. Lysine acetylation is a highly abundant and evolutionarily conserved modification in Escherichia coli. Molecular & Cellular Proteomics : McP. 8: 215-25. PMID 18723842 DOI: 10.1074/mcp.M800187-MCP200  0.36
2008 Lin YY, Qi Y, Lu JY, Pan X, Yuan DS, Zhao Y, Bader JS, Boeke JD. A comprehensive synthetic genetic interaction network governing yeast histone acetylation and deacetylation. Genes & Development. 22: 2062-74. PMID 18676811 DOI: 10.1101/gad.1679508  0.36
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