Yingming Zhao - Publications

Affiliations: 
University of Chicago, Chicago, IL 

195 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Koronowski KB, Greco CM, Huang H, Kim JK, Fribourgh JL, Crosby P, Mathur L, Ren X, Partch CL, Jang C, Qiao F, Zhao Y, Sassone-Corsi P. Ketogenesis impact on liver metabolism revealed by proteomics of lysine β-hydroxybutyrylation. Cell Reports. 36: 109487. PMID 34348140 DOI: 10.1016/j.celrep.2021.109487  1
2021 Gao M, Wang J, Rousseaux S, Tan M, Pan L, Peng L, Wang S, Xu W, Ren J, Liu Y, Spinck M, Barral S, Wang T, Chuffart F, Bourova-Flin E, ... ... Zhao Y, et al. Metabolically controlled histone H4K5 acylation/acetylation ratio drives BRD4 genomic distribution. Cell Reports. 36: 109460. PMID 34320364 DOI: 10.1016/j.celrep.2021.109460  1
2021 Jabbari A, Ackerman JD, Boegman L, Zhao Y. Increases in Great Lake winds and extreme events facilitate interbasin coupling and reduce water quality in Lake Erie. Scientific Reports. 11: 5733. PMID 33707564 DOI: 10.1038/s41598-021-84961-9  0.01
2021 Huang H, Zhang D, Weng Y, Delaney K, Tang Z, Yan C, Qi S, Peng C, Cole PA, Roeder RG, Zhao Y. The regulatory enzymes and protein substrates for the lysine β-hydroxybutyrylation pathway. Science Advances. 7. PMID 33627428 DOI: 10.1126/sciadv.abe2771  1
2021 Fang Y, Xu X, Ding J, Yang L, Doan MT, Karmaus PWF, Snyder NW, Zhao Y, Li JL, Li X. Histone crotonylation promotes mesoendodermal commitment of human embryonic stem cells. Cell Stem Cell. PMID 33450185 DOI: 10.1016/j.stem.2020.12.009  1
2020 Zhu Z, Han Z, Halabelian L, Yang X, Ding J, Zhang N, Ngo L, Song J, Zeng H, He M, Zhao Y, Arrowsmith CH, Luo M, Bartlett MG, Zheng YG. Identification of lysine isobutyrylation as a new histone modification mark. Nucleic Acids Research. PMID 33313896 DOI: 10.1093/nar/gkaa1176  1
2020 Zhang X, Li W, Chen X, Zhao Y, Wang L, Chen M, Li Z, Li Y. Inorganic all-solid-state electrochromic devices with reversible color change between yellow-green and emerald green. Chemical Communications (Cambridge, England). PMID 32734982 DOI: 10.1039/d0cc04129g  1
2020 Zhao Y, Li Y, Huang W. Narrow-linewidth distributed feedback moiré-grating laser for high-speed optical communications. Applied Optics. 59: 3666-3672. PMID 32400488 DOI: 10.1364/AO.389583  1
2020 Chen X, Dou S, Li W, Liu D, Zhang Y, Zhao Y, Li Y, Zhao J, Zhang X. All solid state electrochromic devices based on the LiF electrolyte. Chemical Communications (Cambridge, England). PMID 32242572 DOI: 10.1039/d0cc00697a  1
2019 Zhang D, Tang Z, Huang H, Zhou G, Cui C, Weng Y, Liu W, Kim S, Lee S, Perez-Neut M, Ding J, Czyz D, Hu R, Ye Z, He M, ... Zhao Y, et al. Metabolic regulation of gene expression by histone lactylation. Nature. 574: 575-580. PMID 31645732 DOI: 10.1038/S41586-019-1678-1  1
2019 Zhou Q, Liu Z, Xin Z, Daryanto S, Wang L, Qian J, Wang Y, Liang W, Qin X, Zhao Y, Li X, Cui X, Liu M. Relationship between seed morphological traits and wind dispersal trajectory. Functional Plant Biology : Fpb. PMID 31630725 DOI: 10.1071/Fp19087  1
2019 Liu K, Li F, Sun Q, Lin N, Han H, You K, Tian F, Mao Z, Li T, Tong T, Geng M, Zhao Y, Gu W, Zhao W. p53 β-hydroxybutyrylation attenuates p53 activity. Cell Death & Disease. 10: 243. PMID 30858356 DOI: 10.1038/S41419-019-1463-Y  1
2019 Liu H, Yue J, Huang H, Gou X, Chen SY, Zhao Y, Wu X. Correction: Regulation of focal adhesion dynamics and cell motility by the EB2 and Hax1 protein complex. The Journal of Biological Chemistry. 294: 2948. PMID 30796176 DOI: 10.1074/Jbc.Aac119.007825  1
2018 Xu B, Qian Y, Zhao Y, Fang Z, Tang K, Zhou N, Li D, Wang J. Prognostic value of fractalkine/CX3CL1 concentration in patients with acute myocardial infarction treated with primary percutaneous coronary intervention. Cytokine. PMID 30352758 DOI: 10.1016/j.cyto.2018.10.006  1
2018 Li S, Xiao F, Zhang J, Sun X, Wang H, Zeng Y, Hu J, Tang F, Gu J, Zhao Y, Jin Y, Liao B. Disruption of OCT4 Ubiquitination Increases OCT4 Protein Stability and ASH2L-B-Mediated H3K4 Methylation Promoting Pluripotency Acquisition. Stem Cell Reports. PMID 30269953 DOI: 10.1016/J.Stemcr.2018.09.001  1
2018 Shiota H, Barral S, Buchou T, Tan M, Couté Y, Charbonnier G, Reynoird N, Boussouar F, Gérard M, Zhu M, Bargier L, Puthier D, Chuffart F, Bourova-Flin E, Picaud S, ... ... Zhao Y, et al. Nut Directs p300-Dependent, Genome-Wide H4 Hyperacetylation in Male Germ Cells. Cell Reports. 24: 3477-3487.e6. PMID 30257209 DOI: 10.1016/J.Celrep.2018.08.069  1
2018 Jiang W, Li Q, Zhu Z, Wang Q, Dou J, Zhao Y, Lv W, Zhong F, Yao Y, Zhang G, Liu H, Wang Y, Wang J. Cancer Chemo-Radiotherapy Duo: Nano-Enabled Targeting of DNA Lesion Formation and DNA Damage Response. Acs Applied Materials & Interfaces. PMID 30255704 DOI: 10.1021/acsami.8b10901  1
2018 Huang H, Zhang D, Wang Y, Perez-Neut M, Han Z, Zheng YG, Hao Q, Zhao Y. Lysine benzoylation is a histone mark regulated by SIRT2. Nature Communications. 9: 3374. PMID 30154464 DOI: 10.1038/S41467-018-05567-W  1
2018 Zhang L, Zhao Y, Hein-Griggs D, Ciborowski JJH. Projected monthly temperature changes of the Great Lakes Basin. Environmental Research. 167: 453-467. PMID 30125764 DOI: 10.1016/j.envres.2018.08.017  0.01
2018 Bhat S, Hwang Y, Gibson MD, Morgan MT, Taverna SD, Zhao Y, Wolberger C, Poirier MG, Cole PA. Hydrazide Mimics for Protein Lysine Acylation to Assess Nucleosome Dynamics and Deubiquitinase Action. Journal of the American Chemical Society. PMID 29991262 DOI: 10.1021/Jacs.8B03572  0.01
2018 Huang H, Wang DL, Zhao Y. Quantitative Crotonylome Analysis Expands the Roles of p300 in the Regulation of Lysine Crotonylation Pathway. Proteomics. e1700230. PMID 29932303 DOI: 10.1002/Pmic.201700230  1
2018 Xu JY, Xu Y, Xu Z, Zhai LH, Ye Y, Zhao Y, Chu X, Tan M, Ye BC. Protein Acylation is a General Regulatory Mechanism in Biosynthetic Pathway of Acyl-CoA-Derived Natural Products. Cell Chemical Biology. PMID 29887264 DOI: 10.1016/J.Chembiol.2018.05.005  1
2018 Huang H, Tang S, Ji M, Tang Z, Shimada M, Liu X, Qi S, Locasale JW, Roeder RG, Zhao Y, Li X. p300-Mediated Lysine 2-Hydroxyisobutyrylation Regulates Glycolysis. Molecular Cell. 70: 984. PMID 29883613 DOI: 10.1016/j.molcel.2018.05.035  1
2018 Huang H, Tang S, Ji M, Tang Z, Shimada M, Liu X, Qi S, Locasale JW, Roeder RG, Zhao Y, Li X. EP300-Mediated Lysine 2-Hydroxyisobutyrylation Regulates Glycolysis. Molecular Cell. 70: 663-678.e6. PMID 29775581 DOI: 10.1016/J.Molcel.2018.04.011  1
2018 Sabari BR, Tang Z, Huang H, Yong-Gonzalez V, Molina H, Kong HE, Dai L, Shimada M, Cross JR, Zhao Y, Roeder RG, Allis CD. Intracellular Crotonyl-CoA Stimulates Transcription through p300-Catalyzed Histone Crotonylation. Molecular Cell. 69: 533. PMID 29395068 DOI: 10.1016/j.molcel.2018.01.013  1
2018 Han Z, Wu H, Kim S, Yang X, Li Q, Huang H, Cai H, Bartlett MG, Dong A, Zeng H, Brown PJ, Yang X, Arrowsmith CH, Zhao Y, Zheng YG. Revealing the Protein Propionylation Activity of the Histone Acetyltransferase Males absent on the first (MOF). The Journal of Biological Chemistry. PMID 29321206 DOI: 10.1074/Jbc.Ra117.000529  0.6
2017 Wu JY, Xiang S, Zhang M, Fang B, Huang H, Kwon OK, Zhao Y, Yang Z, Bai W, Bepler G, Zhang XM. Histone deacetylase 6 (HDAC6) deacetylates extracellular signal-regulated kinase 1 (ERK1) and thereby stimulates ERK1 activity. The Journal of Biological Chemistry. PMID 29259132 DOI: 10.1074/Jbc.M117.795955  1
2017 Huang H, Luo Z, Qi S, Huang J, Xu P, Wang X, Gao L, Li F, Wang J, Zhao W, Gu W, Chen Z, Dai L, Dai J, Zhao Y. Landscape of the regulatory elements for lysine 2-hydroxyisobutyrylation pathway. Cell Research. PMID 29192674 DOI: 10.1038/Cr.2017.149  1
2017 Zhao Y, Tang K, Tianbao X, Wang J, Yang J, Li D. Increased serum lysyl oxidase-like 2 levels correlate with the degree of left atrial fibrosis in patients with atrial fibrillation. Bioscience Reports. PMID 29089463 DOI: 10.1042/BSR20171332  1
2017 Huang J, Luo Z, Ying W, Cao Q, Huang H, Dong J, Wu Q, Zhao Y, Qian X, Dai J. 2-Hydroxyisobutyrylation on histone H4K8 is regulated by glucose homeostasis in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. PMID 28768809 DOI: 10.1073/Pnas.1700796114  1
2017 Lombard DB, Zhao Y. ACSF3 and Mal(onate)-Adapted Mitochondria. Cell Chemical Biology. 24: 649-650. PMID 28644952 DOI: 10.1016/J.Chembiol.2017.06.004  0.12
2017 Liu X, Wei W, Liu Y, Yang X, Wu J, Zhang Y, Zhang Q, Shi T, Du JX, Zhao Y, Lei M, Zhou JQ, Li J, Wong J. MOF as an evolutionarily conserved histone crotonyltransferase and transcriptional activation by histone acetyltransferase-deficient and crotonyltransferase-competent CBP/p300. Cell Discovery. 3: 17016. PMID 28580166 DOI: 10.1038/Celldisc.2017.16  1
2017 Lee P, Jiang S, Li Y, Yue J, Gou X, Chen SY, Zhao Y, Schober M, Tan M, Wu X. Phosphorylation of Pkp1 by RIPK4 regulates epidermal differentiation and skin tumorigenesis. The Embo Journal. PMID 28507225 DOI: 10.15252/Embj.201695679  1
2017 Nie L, Shuai L, Zhu M, Liu P, Xie ZF, Jiang S, Jiang HW, Li J, Zhao Y, Li JY, Tan M. The Landscape of Histone Modifications in a High-Fat-Diet-Induced Obese (DIO) Mouse Model. Molecular & Cellular Proteomics : McP. PMID 28450421 DOI: 10.1074/Mcp.M117.067553  1
2016 Sabari BR, Zhang D, Allis CD, Zhao Y. Metabolic regulation of gene expression through histone acylations. Nature Reviews. Molecular Cell Biology. PMID 27924077 DOI: 10.1038/Nrm.2016.140  1
2016 Kaczmarska Z, Ortega E, Goudarzi A, Huang H, Kim S, Márquez JA, Zhao Y, Khochbin S, Panne D. Structure of p300 in complex with acyl-CoA variants. Nature Chemical Biology. PMID 27820805 DOI: 10.1038/Nchembio.2217  1
2016 Sun M, Xu JY, Wu Z, Zhai L, Liu C, Cheng Z, Xu G, Tao S, Ye BC, Zhao Y, Tan M. Characterization of Protein Lysine Propionylation in Escherichia coli: Global Profiling, Dynamic Change and Enzymatic Regulation. Journal of Proteome Research. PMID 27804304 DOI: 10.1021/Acs.Jproteome.6B00798  1
2016 Xiong X, Panchenko T, Yang S, Zhao S, Yan P, Zhang W, Xie W, Li Y, Zhao Y, Allis CD, Li H. Selective recognition of histone crotonylation by double PHD fingers of MOZ and DPF2. Nature Chemical Biology. PMID 27775714 DOI: 10.1038/Nchembio.2218  1
2016 Wang SJ, Li D, Ou Y, Jiang L, Chen Y, Zhao Y, Gu W. Acetylation Is Crucial for p53-Mediated Ferroptosis and Tumor Suppression. Cell Reports. 17: 366-373. PMID 27705786 DOI: 10.1016/J.Celrep.2016.09.022  1
2016 Aramsangtienchai P, Spiegelman NA, He B, Miller SP, Dai L, Zhao Y, Lin H. HDAC8 catalyzes the hydrolysis of long chain fatty acyl lysine. Acs Chemical Biology. PMID 27459069 DOI: 10.1021/Acschembio.6B00396  1
2016 Zhang H, Liu T, Zhang Z, Payne SH, Zhang B, McDermott JE, Zhou JY, Petyuk VA, Chen L, Ray D, Sun S, Yang F, Chen L, Wang J, Shah P, et al. Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer. Cell. PMID 27372738 DOI: 10.1016/J.Cell.2016.05.069  1
2016 Qian L, Nie L, Chen M, Liu P, Zhu J, Zhai L, Tao SC, Cheng Z, Zhao Y, Tan M. Global Profiling of Protein Lysine Malonylation in Escherichia coli Reveals Its Role in Energy Metabolism. Journal of Proteome Research. PMID 27183143 DOI: 10.1021/Acs.Jproteome.6B00264  1
2016 Meng H, Wu P, Zhao Y, Xu Z, Wang ZM, Li C, Wang L, Yang Z. Microalbuminuria in patients with preserved renal function as a risk factor for contrast-Induced acute kidney injury following invasive coronary angiography. European Journal of Radiology. 85: 1063-7. PMID 27161053 DOI: 10.1016/j.ejrad.2016.03.010  1
2016 Xie Z, Zhang D, Chung D, Tang Z, Huang H, Dai L, Qi S, Li J, Colak G, Chen Y, Xia C, Peng C, Ruan H, Kirkey M, Wang D, ... Zhao Y, et al. Metabolic Regulation of Gene Expression by Histone Lysine β-Hydroxybutyrylation. Molecular Cell. 62: 194-206. PMID 27105115 DOI: 10.1016/J.Molcel.2016.03.036  1
2016 Li Y, Sabari BR, Panchenko T, Wen H, Zhao D, Guan H, Wan L, Huang H, Tang Z, Zhao Y, Roeder RG, Shi X, Allis CD, Li H. Molecular Coupling of Histone Crotonylation and Active Transcription by AF9 YEATS Domain. Molecular Cell. 62: 181-193. PMID 27105114 DOI: 10.1016/J.Molcel.2016.03.028  1
2016 Goudarzi A, Zhang D, Huang H, Barral S, Kwon OK, Qi S, Tang Z, Buchou T, Vitte AL, He T, Cheng Z, Montellier E, Gaucher J, Curtet S, Debernardi A, ... Zhao Y, et al. Dynamic Competing Histone H4 K5K8 Acetylation and Butyrylation Are Hallmarks of Highly Active Gene Promoters. Molecular Cell. 62: 169-180. PMID 27105113 DOI: 10.1016/J.Molcel.2016.03.014  1
2016 Zhao D, Guan H, Zhao S, Mi W, Wen H, Li Y, Zhao Y, Allis CD, Shi X, Li H. YEATS2 is a selective histone crotonylation reader. Cell Research. PMID 27103431 DOI: 10.1038/Cr.2016.49  1
2016 Liu K, Li F, Han H, Chen Y, Mao Z, Luo J, Zhao Y, Zheng B, Gu W, Zhao W. Parkin Regulates the Activity of Pyruvate Kinase M2. The Journal of Biological Chemistry. PMID 26975375 DOI: 10.1074/Jbc.M115.703066  1
2016 Washburn MP, Zhao Y, Garcia BA. Reshaping the chromatin and epigenetic landscapes with quantitative mass spectrometry. Molecular & Cellular Proteomics : McP. PMID 26814188 DOI: 10.1074/Mcp.E116.058602  1
2016 Respuela P, Nikolić M, Tan M, Frommolt P, Zhao Y, Wysocka J, Rada-Iglesias A. Foxd3 Promotes Exit from Naive Pluripotency through Enhancer Decommissioning and Inhibits Germline Specification. Cell Stem Cell. 18: 118-133. PMID 26748758 DOI: 10.1016/J.Stem.2015.09.010  1
2016 Kwon OK, Kim SJ, Lee YM, Lee YH, Bae YS, Kim JY, Peng X, Cheng Z, Zhao Y, Lee S. Back Cover: Global analysis of phosphoproteome dynamics in embryonic development of zebrafish (Danio rerio). Proteomics. 16: NA. PMID 26728308 DOI: 10.1002/Pmic.201670016  1
2015 Martínez-Reyes I, Diebold LP, Kong H, Schieber M, Huang H, Hensley CT, Mehta MM, Wang T, Santos JH, Woychik R, Dufour E, Spelbrink JN, Weinberg SE, Zhao Y, DeBerardinis RJ, et al. TCA Cycle and Mitochondrial Membrane Potential Are Necessary for Diverse Biological Functions. Molecular Cell. PMID 26725009 DOI: 10.1016/J.Molcel.2015.12.002  1
2015 Head SA, Shi W, Zhao L, Gorshkov K, Pasunooti K, Chen Y, Deng Z, Li RJ, Shim JS, Tan W, Hartung T, Zhang J, Zhao Y, Colombini M, Liu JO. Antifungal drug itraconazole targets VDAC1 to modulate the AMPK/mTOR signaling axis in endothelial cells. Proceedings of the National Academy of Sciences of the United States of America. PMID 26655341 DOI: 10.1073/Pnas.1512867112  1
2015 Liu H, Yue J, Huang H, Gou X, Chen SY, Zhao Y, Wu X. Regulation of Focal Adhesion Dynamics and Cell Motility by EB2 and Hax1 Complex. The Journal of Biological Chemistry. PMID 26527684 DOI: 10.1074/Jbc.M115.671743  1
2015 Morozumi Y, Boussouar F, Tan M, Chaikuad A, Jamshidikia M, Colak G, He H, Nie L, Petosa C, de Dieuleveult M, Curtet S, Vitte AL, Rabatel C, Debernardi A, Cosset FL, ... ... Zhao Y, et al. Atad2 is a generalist facilitator of chromatin dynamics in embryonic stem cells. Journal of Molecular Cell Biology. PMID 26459632 DOI: 10.1093/Jmcb/Mjv060  1
2015 Kwon OK, Kim S, Lee YM, Lee YH, Bae YS, Kim JY, Peng X, Cheng Z, Zhao Y, Lee S. Global analysis of phosphoproteome dynamics in embryonic development of zebrafish (Danio rerio). Proteomics. PMID 26449285 DOI: 10.1002/Pmic.201500017  1
2015 Cluntun AA, Huang H, Dai L, Liu X, Zhao Y, Locasale JW. The rate of glycolysis quantitatively mediates specific histone acetylation sites. Cancer & Metabolism. 3: 10. PMID 26401273 DOI: 10.1186/S40170-015-0135-3  1
2015 Zhao Y, Garcia BA. Comprehensive Catalog of Currently Documented Histone Modifications. Cold Spring Harbor Perspectives in Biology. 7: a025064. PMID 26330523 DOI: 10.1101/Cshperspect.A025064  1
2015 Colak G, Pougovkina O, Dai L, Tan M, Te Brinke H, Huang H, Cheng Z, Park J, Wan X, Liu X, Yue WW, Wanders RJ, Locasale JW, Lombard DB, de Boer VC, ... Zhao Y, et al. Proteomic and biochemical studies of lysine malonylation suggests its malonic aciduria-associated regulatory role in mitochondrial function and fatty acid oxidation. Molecular & Cellular Proteomics : McP. PMID 26320211 DOI: 10.1074/Mcp.M115.048850  1
2015 Torres MJ, Pandita RK, Kulak O, Kumar R, Formstecher E, Horikoshi N, Mujoo K, Hunt CR, Zhao Y, Lum L, Zaman A, Yeaman C, White MA, Pandita TK. Role of the Exocyst Complex Component Sec6/8 in Genomic Stability. Molecular and Cellular Biology. 35: 3633-45. PMID 26283729 DOI: 10.1128/Mcb.00768-15  1
2015 Kang Y, Zhou XE, Gao X, He Y, Liu W, Ishchenko A, Barty A, White TA, Yefanov O, Han GW, Xu Q, de Waal PW, Ke J, Tan MH, Zhang C, ... Zhao Y, et al. Crystal structure of rhodopsin bound to arrestin by femtosecond X-ray laser. Nature. PMID 26200343 DOI: 10.1038/Nature14656  1
2015 Sabari BR, Tang Z, Huang H, Yong-Gonzalez V, Molina H, Kong HE, Dai L, Shimada M, Cross JR, Zhao Y, Roeder RG, Allis CD. Intracellular crotonyl-CoA stimulates transcription through p300-catalyzed histone crotonylation. Molecular Cell. 58: 203-15. PMID 25818647 DOI: 10.1016/J.Molcel.2015.02.029  1
2015 . HDAC3-dependent reversible lysine acetylation of cardiac myosin heavy chain isoforms modulates their enzymatic and motor activity. The Journal of Biological Chemistry. 290: 6009. PMID 25750266 DOI: 10.1074/Jbc.A110.163865  1
2015 Hirschey MD, Zhao Y. Metabolic Regulation by Lysine Malonylation, Succinylation, and Glutarylation. Molecular & Cellular Proteomics : McP. 14: 2308-15. PMID 25717114 DOI: 10.1074/Mcp.R114.046664  0.01
2015 Huang H, Lin S, Garcia BA, Zhao Y. Quantitative proteomic analysis of histone modifications. Chemical Reviews. 115: 2376-418. PMID 25688442 DOI: 10.1021/Cr500491U  1
2015 Wu Z, Cheng Z, Sun M, Wan X, Liu P, He T, Tan M, Zhao Y. A chemical proteomics approach for global analysis of lysine monomethylome profiling. Molecular & Cellular Proteomics : McP. 14: 329-39. PMID 25505155 DOI: 10.1074/Mcp.M114.044255  1
2015 He QL, Titov DV, Li J, Tan M, Ye Z, Zhao Y, Romo D, Liu JO. Covalent modification of a cysteine residue in the XPB subunit of the general transcription factor TFIIH through single epoxide cleavage of the transcription inhibitor triptolide. Angewandte Chemie (International Ed. in English). 54: 1859-63. PMID 25504624 DOI: 10.1002/Anie.201408817  1
2014 Tang H, Deng K, Zhao Y, Zhou Y, Jiang F. [Use of computed tomography gemstone spectral curve in evaluation on histodifferentiation of gastric cancer]. Zhonghua Yi Xue Za Zhi. 94: 3571-4. PMID 25622836  0.01
2014 Huang H, Sabari BR, Garcia BA, Allis CD, Zhao Y. SnapShot: histone modifications. Cell. 159: 458-458.e1. PMID 25303536 DOI: 10.1016/J.Cell.2014.09.037  1
2014 Sun H, Chen X, Yuan F, Liu J, Zhao Y, Chen SY. Involvement of seven in absentia homolog-1 in ethanol-induced apoptosis in neural crest cells. Neurotoxicology and Teratology. 46: 26-31. PMID 25193017 DOI: 10.1016/J.Ntt.2014.08.006  1
2014 Xu G, Wang J, Wu Z, Qian L, Dai L, Wan X, Tan M, Zhao Y, Wu Y. SAHA regulates histone acetylation, Butyrylation, and protein expression in neuroblastoma. Journal of Proteome Research. 13: 4211-9. PMID 25160476 DOI: 10.1021/Pr500497E  1
2014 Tang S, Huang G, Fan W, Chen Y, Ward JM, Xu X, Xu Q, Kang A, McBurney MW, Fargo DC, Hu G, Baumgart-Vogt E, Zhao Y, Li X. SIRT1-mediated deacetylation of CRABPII regulates cellular retinoic acid signaling and modulates embryonic stem cell differentiation. Molecular Cell. 55: 843-55. PMID 25155613 DOI: 10.1016/J.Molcel.2014.07.011  1
2014 Zhang B, Wang J, Wang X, Zhu J, Liu Q, Shi Z, Chambers MC, Zimmerman LJ, Shaddox KF, Kim S, Davies SR, Wang S, Wang P, Kinsinger CR, Rivers RC, et al. Proteogenomic characterization of human colon and rectal cancer. Nature. 513: 382-7. PMID 25043054 DOI: 10.1038/Nature13438  1
2014 Tan M, Peng C, Anderson KA, Chhoy P, Xie Z, Dai L, Park J, Chen Y, Huang H, Zhang Y, Ro J, Wagner GR, Green MF, Madsen AS, Schmiesing J, ... ... Zhao Y, et al. Lysine glutarylation is a protein posttranslational modification regulated by SIRT5. Cell Metabolism. 19: 605-17. PMID 24703693 DOI: 10.1016/J.Cmet.2014.03.014  1
2014 Dai L, Peng C, Montellier E, Lu Z, Chen Y, Ishii H, Debernardi A, Buchou T, Rousseaux S, Jin F, Sabari BR, Deng Z, Allis CD, Ren B, Khochbin S, ... Zhao Y, et al. Lysine 2-hydroxyisobutyrylation is a widely distributed active histone mark. Nature Chemical Biology. 10: 365-70. PMID 24681537 DOI: 10.1038/Nchembio.1497  1
2014 Wei W, Yu Y, Lv W, Deng K, Yuan L, Zhao Y. Predictive value of dual-energy spectral computed tomographic imaging on the histological origin of carcinomas in the ampullary region. Abdominal Imaging. 39: 702-10. PMID 24590398 DOI: 10.1007/s00261-014-0098-9  1
2014 Kazgan N, Metukuri MR, Purushotham A, Lu J, Rao A, Lee S, Pratt-Hyatt M, Lickteig A, Csanaky IL, Zhao Y, Dawson PA, Li X. Intestine-specific deletion of SIRT1 in mice impairs DCoH2-HNF-1α-FXR signaling and alters systemic bile acid homeostasis. Gastroenterology. 146: 1006-16. PMID 24389307 DOI: 10.1053/J.Gastro.2013.12.029  1
2014 Luo X, Wang B, Tang F, Zhang J, Zhao Y, Li H, Jin Y. Wwp2 targets SRG3, a scaffold protein of the SWI/SNF-like BAF complex, for ubiquitination and degradation. Biochemical and Biophysical Research Communications. 443: 1048-53. PMID 24365151 DOI: 10.1016/J.Bbrc.2013.12.089  1
2014 Boland ML, Huang H, Shah R, Ali A, Zhao Y, Rhodes CJ, Macleod KF. Abstract 4324: BNip3 connects energy sensing to hepatic lipid metabolism and mitophagy Cancer Research. 74: 4324-4324. DOI: 10.1158/1538-7445.Am2014-4324  1
2013 Colak G, Xie Z, Zhu AY, Dai L, Lu Z, Zhang Y, Wan X, Chen Y, Cha YH, Lin H, Zhao Y, Tan M. Identification of lysine succinylation substrates and the succinylation regulatory enzyme CobB in Escherichia coli. Molecular & Cellular Proteomics : McP. 12: 3509-20. PMID 24176774 DOI: 10.1074/Mcp.M113.031567  1
2013 Chen Y, Colak G, Zhao Y. SILAC-based quantification of Sirt1-responsive lysine acetylome. Methods in Molecular Biology (Clifton, N.J.). 1077: 105-20. PMID 24014402 DOI: 10.1007/978-1-62703-637-5_7  1
2013 Hattori T, Taft JM, Swist KM, Luo H, Witt H, Slattery M, Koide A, Ruthenburg AJ, Krajewski K, Strahl BD, White KP, Farnham PJ, Zhao Y, Koide S. Recombinant antibodies to histone post-translational modifications. Nature Methods. 10: 992-5. PMID 23955773 DOI: 10.1038/Nmeth.2605  1
2013 Montellier E, Boussouar F, Rousseaux S, Zhang K, Buchou T, Fenaille F, Shiota H, Debernardi A, Héry P, Curtet S, Jamshidikia M, Barral S, Holota H, Bergon A, Lopez F, ... ... Zhao Y, et al. Chromatin-to-nucleoprotamine transition is controlled by the histone H2B variant TH2B. Genes & Development. 27: 1680-92. PMID 23884607 DOI: 10.1101/Gad.220095.113  1
2013 Dobbin MM, Madabhushi R, Pan L, Chen Y, Kim D, Gao J, Ahanonu B, Pao PC, Qiu Y, Zhao Y, Tsai LH. SIRT1 collaborates with ATM and HDAC1 to maintain genomic stability in neurons. Nature Neuroscience. 16: 1008-15. PMID 23852118 DOI: 10.1038/Nn.3460  1
2013 Park J, Chen Y, Tishkoff DX, Peng C, Tan M, Dai L, Xie Z, Zhang Y, Zwaans BM, Skinner ME, Lombard DB, Zhao Y. SIRT5-mediated lysine desuccinylation impacts diverse metabolic pathways. Molecular Cell. 50: 919-30. PMID 23806337 DOI: 10.1016/J.Molcel.2013.06.001  1
2013 Chen B, Tao Z, Zhao Y, Chen H, Yong Y, Liu X, Wang H, Wu Z, Yang Z, Yuan L. Catheter-based intramyocardial delivery (NavX) of adenovirus achieves safe and accurate gene transfer in pigs. Plos One. 8: e53007. PMID 23301013 DOI: 10.1371/journal.pone.0053007  1
2013 Lee S, Tan M, Dai L, Kwon OK, Yang JS, Zhao Y, Chen Y. MS/MS of synthetic peptide is not sufficient to confirm new types of protein modifications. Journal of Proteome Research. 12: 1007-13. PMID 23268713 DOI: 10.1021/Pr300667E  1
2013 Liao B, Zhong X, Xu H, Xiao F, Fang Z, Gu J, Chen Y, Zhao Y, Jin Y. Itch, an E3 ligase of Oct4, is required for embryonic stem cell self-renewal and pluripotency induction. Journal of Cellular Physiology. 228: 1443-51. PMID 23255053 DOI: 10.1002/Jcp.24297  1
2012 Qiang L, Wang L, Kon N, Zhao W, Lee S, Zhang Y, Rosenbaum M, Zhao Y, Gu W, Farmer SR, Accili D. Brown remodeling of white adipose tissue by SirT1-dependent deacetylation of Pparγ. Cell. 150: 620-32. PMID 22863012 DOI: 10.1016/J.Cell.2012.06.027  1
2012 Chen Y, Zhao W, Yang JS, Cheng Z, Luo H, Lu Z, Tan M, Gu W, Zhao Y. Quantitative acetylome analysis reveals the roles of SIRT1 in regulating diverse substrates and cellular pathways. Molecular & Cellular Proteomics : McP. 11: 1048-62. PMID 22826441 DOI: 10.1074/Mcp.M112.019547  1
2012 Li T, Kon N, Jiang L, Tan M, Ludwig T, Zhao Y, Baer R, Gu W. Tumor suppression in the absence of p53-mediated cell-cycle arrest, apoptosis, and senescence. Cell. 149: 1269-83. PMID 22682249 DOI: 10.1016/J.Cell.2012.04.026  1
2012 Choi MC, Cohen TJ, Barrientos T, Wang B, Li M, Simmons BJ, Yang JS, Cox GA, Zhao Y, Yao TP. A direct HDAC4-MAP kinase crosstalk activates muscle atrophy program. Molecular Cell. 47: 122-32. PMID 22658415 DOI: 10.1016/J.Molcel.2012.04.025  1
2012 Xie Z, Dai J, Dai L, Tan M, Cheng Z, Wu Y, Boeke JD, Zhao Y. Lysine succinylation and lysine malonylation in histones. Molecular & Cellular Proteomics : McP. 11: 100-7. PMID 22389435 DOI: 10.1074/Mcp.M111.015875  1
2012 Xu Z, Yan L, Ge Y, Zhang Q, Yang N, Zhang M, Zhao Y, Sun P, Gao J, Tao Z, Yang Z. Effect of the calcium sensing receptor on rat bone marrow-derived mesenchymal stem cell proliferation through the ERK1/2 pathway Molecular Biology Reports. 39: 7271-7279. PMID 22314915 DOI: 10.1007/s11033-012-1557-4  1
2012 Liu J, Yan J, Jiang S, Wen J, Chen L, Zhao Y, Lin A. Site-specific ubiquitination is required for relieving the transcription factor Miz1-mediated suppression on TNF-α-induced JNK activation and inflammation. Proceedings of the National Academy of Sciences of the United States of America. 109: 191-6. PMID 22184250 DOI: 10.1073/Pnas.1105176108  0.04
2012 Montellier E, Rousseaux S, Zhao Y, Khochbin S. Histone crotonylation specifically marks the haploid male germ cell gene expression program: post-meiotic male-specific gene expression. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 34: 187-93. PMID 22170506 DOI: 10.1002/Bies.201100141  1
2012 Humphrey S, Zhao Y, Higgs D. The effects of water currents on walleye (sander vitreus) eggs and larvae and implications for the early survival of walleye in lake Erie Canadian Journal of Fisheries and Aquatic Sciences. 69: 1959-1967. DOI: 10.1139/f2012-116  1
2011 Lu Z, Cheng Z, Zhao Y, Volchenboum SL. Bioinformatic analysis and post-translational modification crosstalk prediction of lysine acetylation. Plos One. 6: e28228. PMID 22164248 DOI: 10.1371/Journal.Pone.0028228  1
2011 Tan M, Luo H, Lee S, Jin F, Yang JS, Montellier E, Buchou T, Cheng Z, Rousseaux S, Rajagopal N, Lu Z, Ye Z, Zhu Q, Wysocka J, Ye Y, ... ... Zhao Y, et al. Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification. Cell. 146: 1016-28. PMID 21925322 DOI: 10.1016/J.Cell.2011.08.008  1
2011 Peng C, Lu Z, Xie Z, Cheng Z, Chen Y, Tan M, Luo H, Zhang Y, He W, Yang K, Zwaans BM, Tishkoff D, Ho L, Lombard D, He TC, ... ... Zhao Y, et al. The first identification of lysine malonylation substrates and its regulatory enzyme. Molecular & Cellular Proteomics : McP. 10: M111.012658. PMID 21908771 DOI: 10.1074/Mcp.M111.012658  1
2011 Lu JY, Lin YY, Sheu JC, Wu JT, Lee FJ, Chen Y, Lin MI, Chiang FT, Tai TY, Berger SL, Zhao Y, Tsai KS, Zhu H, Chuang LM, Boeke JD. Acetylation of yeast AMPK controls intrinsic aging independently of caloric restriction. Cell. 146: 969-79. PMID 21906795 DOI: 10.1016/J.Cell.2011.07.044  1
2011 Jin J, Zhao Y, Tan X, Guo C, Yang Z, Miao D. An improved transplantation strategy for mouse mesenchymal stem cells in an acute myocardial infarction model. Plos One. 6: e21005. PMID 21698117 DOI: 10.1371/journal.pone.0021005  1
2011 Ghosh S, Vassilev AP, Zhang J, Zhao Y, DePamphilis ML. Assembly of the human origin recognition complex occurs through independent nuclear localization of its components. The Journal of Biological Chemistry. 286: 23831-41. PMID 21555516 DOI: 10.1074/Jbc.M110.215988  1
2011 Li X, Wang QJ, Pan N, Lee S, Zhao Y, Chait BT, Yue Z. Phosphorylation-dependent 14-3-3 binding to LRRK2 is impaired by common mutations of familial Parkinson's disease. Plos One. 6: e17153. PMID 21390248 DOI: 10.1371/Journal.Pone.0017153  1
2011 Zhao Y, Tao Z, Xu Z, Tao Z, Chen B, Wang L, Li C, Chen L, Jia Q, Jia E, Zhu T, Yang Z. Toxic effects of a high dose of non-ionic iodinated contrast media on renal glomerular and aortic endothelial cells in aged rats in vivo. Toxicology Letters. 202: 253-60. PMID 21354280 DOI: 10.1016/j.toxlet.2011.02.011  1
2011 Tao Z, Chen B, Tan X, Zhao Y, Wang L, Zhu T, Cao K, Yang Z, Kan YW, Su H. Coexpression of VEGF and angiopoietin-1 promotes angiogenesis and cardiomyocyte proliferation reduces apoptosis in porcine myocardial infarction (MI) heart. Proceedings of the National Academy of Sciences of the United States of America. 108: 2064-9. PMID 21245320 DOI: 10.1073/pnas.1018925108  1
2011 Chu CW, Hou F, Zhang J, Phu L, Loktev AV, Kirkpatrick DS, Jackson PK, Zhao Y, Zou H. A novel acetylation of β-tubulin by San modulates microtubule polymerization via down-regulating tubulin incorporation. Molecular Biology of the Cell. 22: 448-56. PMID 21177827 DOI: 10.1091/Mbc.E10-03-0203  1
2011 Samant SA, Courson DS, Sundaresan NR, Pillai VB, Tan M, Zhao Y, Shroff SG, Rock RS, Gupta MP. HDAC3-dependent reversible lysine acetylation of cardiac myosin heavy chain isoforms modulates their enzymatic and motor activity. The Journal of Biological Chemistry. 286: 5567-77. PMID 21177250 DOI: 10.1074/jbc.M110.163865  1
2011 Zhang Z, Tan M, Xie Z, Dai L, Chen Y, Zhao Y. Identification of lysine succinylation as a new post-translational modification. Nature Chemical Biology. 7: 58-63. PMID 21151122 DOI: 10.1038/Nchembio.495  1
2011 Song H, Li CW, Labaff AM, Lim SO, Li LY, Kan SF, Chen Y, Zhang K, Lang J, Xie X, Wang Y, Huo LF, Hsu SC, Chen X, Zhao Y, et al. Acetylation of EGF receptor contributes to tumor cell resistance to histone deacetylase inhibitors Biochemical and Biophysical Research Communications. 404: 68-73. PMID 21094134 DOI: 10.1016/J.Bbrc.2010.11.064  1
2011 He BC, Gao JL, Zhang BQ, Luo Q, Shi Q, Kim SH, Huang E, Gao Y, Yang K, Wagner ER, Wang L, Tang N, Luo J, Liu X, Li M, ... ... Zhao Y, et al. Tetrandrine inhibits Wnt/β-catenin signaling and suppresses tumor growth of human colorectal cancer. Molecular Pharmacology. 79: 211-9. PMID 20978119 DOI: 10.1124/Mol.110.068668  1
2010 Tao Z, Chen B, Zhao Y, Chen H, Wang L, Yong Y, Cao K, Yu Q, Ke D, Wang H, Wu Z, Yang Z. HGF percutaneous endocardial injection induces cardiomyocyte proliferation and rescues cardiac function in pigs. Journal of Biomedical Research. 24: 198-206. PMID 23554631 DOI: 10.1016/S1674-8301(10)60029-2  1
2010 Erzurum S, Rounds SI, Stevens T, Aldred M, Aliotta J, Archer SL, Asosingh K, Balaban R, Bauer N, Bhattacharya J, Bogaard H, Choudhary G, Dorn GW, Dweik R, Fagan K, ... ... Zhao Y, et al. Strategic plan for lung vascular research: An NHLBI-ORDR Workshop Report. American Journal of Respiratory and Critical Care Medicine. 182: 1554-62. PMID 20833821 DOI: 10.1164/Rccm.201006-0869Ws  1
2010 Lee S, Chen Y, Luo H, Wu AA, Wilde M, Schumacker PT, Zhao Y. The first global screening of protein substrates bearing protein-bound 3,4-Dihydroxyphenylalanine in Escherichia coli and human mitochondria. Journal of Proteome Research. 9: 5705-14. PMID 20818827 DOI: 10.1021/Pr1005179  1
2010 Heise CJ, Xu BE, Deaton SL, Cha SK, Cheng CJ, Earnest S, Sengupta S, Juang YC, Stippec S, Xu Y, Zhao Y, Huang CL, Cobb MH. Serum and glucocorticoid-induced kinase (SGK) 1 and the epithelial sodium channel are regulated by multiple with no lysine (WNK) family members. The Journal of Biological Chemistry. 285: 25161-7. PMID 20525693 DOI: 10.1074/Jbc.M110.103432  1
2010 Kuo HP, Lee DF, Chen CT, Liu M, Chou CK, Lee HJ, Du Y, Xie X, Wei Y, Xia W, Weihua Z, Yang JY, Yen CJ, Huang TH, Tan M, ... ... Zhao Y, et al. ARD1 stabilization of TSC2 suppresses tumorigenesis through the mTOR signaling pathway. Science Signaling. 3: ra9. PMID 20145209 DOI: 10.1126/Scisignal.2000590  1
2010 Bajpai R, Chen DA, Rada-Iglesias A, Zhang J, Xiong Y, Helms J, Chang CP, Zhao Y, Swigut T, Wysocka J. CHD7 cooperates with PBAF to control multipotent neural crest formation. Nature. 463: 958-62. PMID 20130577 DOI: 10.1038/Nature08733  1
2010 Li L, Sun L, Gao F, Jiang J, Yang Y, Li C, Gu J, Wei Z, Yang A, Lu R, Ma Y, Tang F, Kwon SW, Zhao Y, Li J, et al. Stk40 links the pluripotency factor Oct4 to the Erk/MAPK pathway and controls extraembryonic endoderm differentiation. Proceedings of the National Academy of Sciences of the United States of America. 107: 1402-7. PMID 20080709 DOI: 10.1073/Pnas.0905657107  1
2010 Zhang K, Chen Y, Zhang Z, Tao S, Zhu H, Zhao Y. Unrestrictive identification of non-phosphorylation PTMs in yeast kinases by MS and PTMap. Proteomics. 10: 896-903. PMID 20049863 DOI: 10.1002/Pmic.200900510  1
2010 Zeng SX, Li Y, Jin Y, Zhang Q, Keller DM, McQuaw CM, Barklis E, Stone S, Hoatlin M, Zhao Y, Lu H. Structure-specific recognition protein 1 facilitates microtubule growth and bundling required for mitosis. Molecular and Cellular Biology. 30: 935-47. PMID 19995907 DOI: 10.1128/Mcb.01379-09  1
2010 Zhang J, Chen Y, Zhang Z, Xing G, Wysocka J, Zhao Y. MS/MS/MS reveals false positive identification of histone serine methylation. Journal of Proteome Research. 9: 585-94. PMID 19877717 DOI: 10.1021/Pr900864S  1
2009 Peng JC, Valouev A, Swigut T, Zhang J, Zhao Y, Sidow A, Wysocka J. Jarid2/Jumonji coordinates control of PRC2 enzymatic activity and target gene occupancy in pluripotent cells. Cell. 139: 1290-302. PMID 20064375 DOI: 10.1016/J.Cell.2009.12.002  1
2009 Rosse C, Formstecher E, Boeckeler K, Zhao Y, Kremerskothen J, White MD, Camonis JH, Parker PJ. An aPKC-exocyst complex controls paxillin phosphorylation and migration through localised JNK1 activation. Plos Biology. 7: e1000235. PMID 19885391 DOI: 10.1371/Journal.Pbio.1000235  1
2009 Liu J, Zhao Y, Eilers M, Lin A. Miz1 is a signal- and pathway-specific modulator or regulator (SMOR) that suppresses TNF-alpha-induced JNK1 activation. Proceedings of the National Academy of Sciences of the United States of America. 106: 18279-84. PMID 19815509 DOI: 10.1073/Pnas.0906328106  0.04
2009 Zhao Y, Jensen ON. Modification-specific proteomics: strategies for characterization of post-translational modifications using enrichment techniques. Proteomics. 9: 4632-41. PMID 19743430 DOI: 10.1002/Pmic.200900398  0.01
2009 Basu A, Rose KL, Zhang J, Beavis RC, Ueberheide B, Garcia BA, Chait B, Zhao Y, Hunt DF, Segal E, Allis CD, Hake SB. Proteome-wide prediction of acetylation substrates. Proceedings of the National Academy of Sciences of the United States of America. 106: 13785-90. PMID 19666589 DOI: 10.1073/Pnas.0906801106  1
2009 Gao F, Kwon SW, Zhao Y, Jin Y. PARP1 poly(ADP-ribosyl)ates Sox2 to control Sox2 protein levels and FGF4 expression during embryonic stem cell differentiation. The Journal of Biological Chemistry. 284: 22263-73. PMID 19531481 DOI: 10.1074/Jbc.M109.033118  1
2009 Li H, Wang B, Yang A, Lu R, Wang W, Zhou Y, Shi G, Kwon SW, Zhao Y, Jin Y. Ly-1 antibody reactive clone is an important nucleolar protein for control of self-renewal and differentiation in embryonic stem cells. Stem Cells (Dayton, Ohio). 27: 1244-54. PMID 19489080 DOI: 10.1002/Stem.55  1
2009 Chen Y, Zhang J, Xing G, Zhao Y. Mascot-derived false positive peptide identifications revealed by manual analysis of tandem mass spectra. Journal of Proteome Research. 8: 3141-7. PMID 19368407 DOI: 10.1021/Pr900172V  1
2009 Chan DW, Wang Y, Wu M, Wong J, Qin J, Zhao Y. Unbiased proteomic screen for binding proteins to modified lysines on histone H3. Proteomics. 9: 2343-54. PMID 19337993 DOI: 10.1002/Pmic.200800600  1
2009 Lin YY, Lu JY, Zhang J, Walter W, Dang W, Wan J, Tao SC, Qian J, Zhao Y, Boeke JD, Berger SL, Zhu H. Protein acetylation microarray reveals that NuA4 controls key metabolic target regulating gluconeogenesis. Cell. 136: 1073-84. PMID 19303850 DOI: 10.1016/J.Cell.2009.01.033  1
2009 Chen Y, Chen W, Cobb MH, Zhao Y. PTMap--a sequence alignment software for unrestricted, accurate, and full-spectrum identification of post-translational modification sites. Proceedings of the National Academy of Sciences of the United States of America. 106: 761-6. PMID 19136633 DOI: 10.1073/Pnas.0811739106  1
2009 Zhang K, Chen Y, Zhang Z, Zhao Y. Identification and verification of lysine propionylation and butyrylation in yeast core histones using PTMap software. Journal of Proteome Research. 8: 900-6. PMID 19113941 DOI: 10.1021/Pr8005155  1
2009 Chen W, Chen Y, Xu BE, Juang YC, Stippec S, Zhao Y, Cobb MH. Regulation of a third conserved phosphorylation site in SGK1. The Journal of Biological Chemistry. 284: 3453-60. PMID 19068477 DOI: 10.1074/Jbc.M807502200  1
2009 Chon H, Vassilev A, DePamphilis ML, Zhao Y, Zhang J, Burgers PM, Crouch RJ, Cerritelli SM. Contributions of the two accessory subunits, RNASEH2B and RNASEH2C, to the activity and properties of the human RNase H2 complex. Nucleic Acids Research. 37: 96-110. PMID 19015152 DOI: 10.1093/Nar/Gkn913  1
2009 Cheng Z, Tang Y, Chen Y, Kim S, Liu H, Li SS, Gu W, Zhao Y. Molecular characterization of propionyllysines in non-histone proteins. Molecular & Cellular Proteomics : McP. 8: 45-52. PMID 18753126 DOI: 10.1074/Mcp.M800224-Mcp200  1
2009 Zhang J, Sprung R, Pei J, Tan X, Kim S, Zhu H, Liu CF, Grishin NV, Zhao Y. Lysine acetylation is a highly abundant and evolutionarily conserved modification in Escherichia coli. Molecular & Cellular Proteomics : McP. 8: 215-25. PMID 18723842 DOI: 10.1074/Mcp.M800187-Mcp200  1
2009 Zhao Y, Jones ML, Shuter BJ, Roseman EF. A biophysical model of Lake Erie walleye (Sander vitreus) explains interannual variations in recruitment Canadian Journal of Fisheries and Aquatic Sciences. 66: 114-125. DOI: 10.1139/F08-188  1
2008 Xing G, Zhang J, Chen Y, Zhao Y. Identification of four novel types of in vitro protein modifications. Journal of Proteome Research. 7: 4603-8. PMID 18767873 DOI: 10.1021/Pr800456Q  1
2008 Lin YY, Qi Y, Lu JY, Pan X, Yuan DS, Zhao Y, Bader JS, Boeke JD. A comprehensive synthetic genetic interaction network governing yeast histone acetylation and deacetylation. Genes & Development. 22: 2062-74. PMID 18676811 DOI: 10.1101/Gad.1679508  1
2008 Tang Y, Zhao W, Chen Y, Zhao Y, Gu W. Acetylation is indispensable for p53 activation. Cell. 133: 612-26. PMID 18485870 DOI: 10.1016/J.Cell.2008.03.025  1
2008 Deng H, Yu F, Chen J, Zhao Y, Xiang J, Lin A. Phosphorylation of Bad at Thr-201 by JNK1 promotes glycolysis through activation of phosphofructokinase-1. The Journal of Biological Chemistry. 283: 20754-60. PMID 18469002 DOI: 10.1074/Jbc.M800024200  0.04
2008 Jung SY, Li Y, Wang Y, Chen Y, Zhao Y, Qin J. Complications in the assignment of 14 and 28 Da mass shift detected by mass spectrometry as in vivo methylation from endogenous proteins. Analytical Chemistry. 80: 1721-9. PMID 18247584 DOI: 10.1021/Ac7021025  1
2008 Sprung R, Chen Y, Zhang K, Cheng D, Zhang T, Peng J, Zhao Y. Identification and validation of eukaryotic aspartate and glutamate methylation in proteins. Journal of Proteome Research. 7: 1001-6. PMID 18220335 DOI: 10.1021/Pr0705338  1
2008 Zhao Y, Shuter BJ, Jackson DA. Life history variation parallels phylogeographical patterns in North American walleye (Sander vitreus) populations Canadian Journal of Fisheries and Aquatic Sciences. 65: 198-211. DOI: 10.1139/F07-162  1
2008 Sung YJ, Li Y, Wang Y, Chen Y, Liu XD, Eissa NT, Zhao Y, Qin J. Complications in the assignment of 14 and 28 da mass shift detected by mass spectrometry as in vivo methylation from endogenous proteins (Analytical Chemistry (2008) 80, (1721-1729)) Analytical Chemistry. 80. DOI: 10.1021/Ac801953E  1
2008 Tang Y, Zhao W, Chen Y, Zhao Y, Gu W. Acetylation Is Indispensable for p53 Activation (DOI: 10.1016/j.cell.2007.11.037) Cell. 133. DOI: 10.1016/J.Cell.2008.06.005  1
2007 Kang J, Chen Y, Zhao Y, Yu H. Autophosphorylation-dependent activation of human Mps1 is required for the spindle checkpoint. Proceedings of the National Academy of Sciences of the United States of America. 104: 20232-7. PMID 18083840 DOI: 10.1073/Pnas.0710519105  1
2007 Bartz R, Zehmer JK, Zhu M, Chen Y, Serrero G, Zhao Y, Liu P. Dynamic activity of lipid droplets: protein phosphorylation and GTP-mediated protein translocation. Journal of Proteome Research. 6: 3256-65. PMID 17608402 DOI: 10.1021/Pr070158J  1
2007 Ganesan AK, Kho Y, Kim SC, Chen Y, Zhao Y, White MA. Broad spectrum identification of SUMO substrates in melanoma cells. Proteomics. 7: 2216-21. PMID 17549794 DOI: 10.1002/Pmic.200600971  1
2007 Li H, Zhang Z, Wang B, Zhang J, Zhao Y, Jin Y. Wwp2-mediated ubiquitination of the RNA polymerase II large subunit in mouse embryonic pluripotent stem cells. Molecular and Cellular Biology. 27: 5296-305. PMID 17526739 DOI: 10.1128/Mcb.01667-06  1
2007 Raman M, Earnest S, Zhang K, Zhao Y, Cobb MH. TAO kinases mediate activation of p38 in response to DNA damage. The Embo Journal. 26: 2005-14. PMID 17396146 DOI: 10.1038/Sj.Emboj.7601668  1
2007 Xu Y, Sprung R, Kwon SW, Kim SC, Zhao Y. Isolation of phosphopeptides by pI-difference-based electrophoresis. Journal of Proteome Research. 6: 1153-7. PMID 17330948 DOI: 10.1021/Pr060498P  1
2007 Chen Y, Sprung R, Tang Y, Ball H, Sangras B, Kim SC, Falck JR, Peng J, Gu W, Zhao Y. Lysine propionylation and butyrylation are novel post-translational modifications in histones. Molecular & Cellular Proteomics : McP. 6: 812-9. PMID 17267393 DOI: 10.1074/Mcp.M700021-Mcp200  1
2007 Lee J, Xu Y, Chen Y, Sprung R, Kim SC, Xie S, Zhao Y. Mitochondrial phosphoproteome revealed by an improved IMAC method and MS/MS/MS. Molecular & Cellular Proteomics : McP. 6: 669-76. PMID 17208939 DOI: 10.1074/Mcp.M600218-Mcp200  1
2006 Kim SC, Chen Y, Mirza S, Xu Y, Lee J, Liu P, Zhao Y. A clean, more efficient method for in-solution digestion of protein mixtures without detergent or urea. Journal of Proteome Research. 5: 3446-52. PMID 17137347 DOI: 10.1021/Pr0603396  1
2006 Chien Y, Kim S, Bumeister R, Loo YM, Kwon SW, Johnson CL, Balakireva MG, Romeo Y, Kopelovich L, Gale M, Yeaman C, Camonis JH, Zhao Y, White MA. RalB GTPase-mediated activation of the IkappaB family kinase TBK1 couples innate immune signaling to tumor cell survival. Cell. 127: 157-70. PMID 17018283 DOI: 10.1016/J.Cell.2006.08.034  1
2006 Kim SC, Sprung R, Chen Y, Xu Y, Ball H, Pei J, Cheng T, Kho Y, Xiao H, Xiao L, Grishin NV, White M, Yang XJ, Zhao Y. Substrate and functional diversity of lysine acetylation revealed by a proteomics survey. Molecular Cell. 23: 607-18. PMID 16916647 DOI: 10.1016/J.Molcel.2006.06.026  1
2006 Anselmo AN, Earnest S, Chen W, Juang YC, Kim SC, Zhao Y, Cobb MH. WNK1 and OSR1 regulate the Na+, K+, 2Cl- cotransporter in HeLa cells. Proceedings of the National Academy of Sciences of the United States of America. 103: 10883-8. PMID 16832045 DOI: 10.1073/Pnas.0604607103  1
2006 Radichev I, Kwon SW, Zhao Y, DePamphilis ML, Vassilev A. Genetic analysis of human Orc2 reveals specific domains that are required in vivo for assembly and nuclear localization of the origin recognition complex. The Journal of Biological Chemistry. 281: 23264-73. PMID 16762929 DOI: 10.1074/Jbc.M603873200  1
2006 Qiu Y, Zhao Y, Becker M, John S, Parekh BS, Huang S, Hendarwanto A, Martinez ED, Chen Y, Lu H, Adkins NL, Stavreva DA, Wiench M, Georgel PT, Schiltz RL, et al. HDAC1 acetylation is linked to progressive modulation of steroid receptor-induced gene transcription. Molecular Cell. 22: 669-79. PMID 16762839 DOI: 10.1016/J.Molcel.2006.04.019  1
2006 Binns D, Januszewski T, Chen Y, Hill J, Markin VS, Zhao Y, Gilpin C, Chapman KD, Anderson RG, Goodman JM. An intimate collaboration between peroxisomes and lipid bodies. The Journal of Cell Biology. 173: 719-31. PMID 16735577 DOI: 10.1083/Jcb.200511125  1
2006 Jin Y, Dai MS, Lu SZ, Xu Y, Luo Z, Zhao Y, Lu H. 14-3-3gamma binds to MDMX that is phosphorylated by UV-activated Chk1, resulting in p53 activation. The Embo Journal. 25: 1207-18. PMID 16511572 DOI: 10.1038/Sj.Emboj.7601010  1
2006 Nandi A, Sprung R, Barma DK, Zhao Y, Kim SC, Falck JR, Zhao Y. Global identification of O-GlcNAc-modified proteins. Analytical Chemistry. 78: 452-8. PMID 16408927 DOI: 10.1021/Ac051207J  1
2006 Jones ML, Shuter BJ, Zhao Y, Stockwell JD. Forecasting effects of climate change on Great Lakes fisheries: Models that link habitat supply to population dynamics can help Canadian Journal of Fisheries and Aquatic Sciences. 63: 457-468. DOI: 10.1139/F05-239  1
2005 Zhi G, Ryder JW, Huang J, Ding P, Chen Y, Zhao Y, Kamm KE, Stull JT. Myosin light chain kinase and myosin phosphorylation effect frequency-dependent potentiation of skeletal muscle contraction. Proceedings of the National Academy of Sciences of the United States of America. 102: 17519-24. PMID 16299103 DOI: 10.1073/Pnas.0506846102  1
2005 Zhou G, Li H, Gong Y, Zhao Y, Cheng J, Lee P, Zhao Y. Proteomic analysis of global alteration of protein expression in squamous cell carcinoma of the esophagus. Proteomics. 5: 3814-21. PMID 16127732 DOI: 10.1002/Pmic.200401230  0.04
2005 Cheng J, Zhang D, Kim K, Zhao Y, Zhao Y, Su B. Mip1, an MEKK2-interacting protein, controls MEKK2 dimerization and activation. Molecular and Cellular Biology. 25: 5955-64. PMID 15988011 DOI: 10.1128/Mcb.25.14.5955-5964.2005  1
2005 Sprung R, Nandi A, Chen Y, Kim SC, Barma D, Falck JR, Zhao Y. Tagging-via-substrate strategy for probing O-GlcNAc modified proteins. Journal of Proteome Research. 4: 950-7. PMID 15952742 DOI: 10.1021/Pr050033J  1
2004 Kho Y, Kim SC, Jiang C, Barma D, Kwon SW, Cheng J, Jaunbergs J, Weinbaum C, Tamanoi F, Falck J, Zhao Y. A tagging-via-substrate technology for detection and proteomics of farnesylated proteins. Proceedings of the National Academy of Sciences of the United States of America. 101: 12479-84. PMID 15308774 DOI: 10.1073/Pnas.0403413101  1
2004 Geiman TM, Sankpal UT, Robertson AK, Chen Y, Mazumdar M, Heale JT, Schmiesing JA, Kim W, Yokomori K, Zhao Y, Robertson KD. Isolation and characterization of a novel DNA methyltransferase complex linking DNMT3B with components of the mitotic chromosome condensation machinery. Nucleic Acids Research. 32: 2716-29. PMID 15148359 DOI: 10.1093/Nar/Gkh589  1
2004 Geiman TM, Sankpal UT, Robertson AK, Zhao Y, Zhao Y, Robertson KD. DNMT3B interacts with hSNF2H chromatin remodeling enzyme, HDACs 1 and 2, and components of the histone methylation system. Biochemical and Biophysical Research Communications. 318: 544-55. PMID 15120635 DOI: 10.1016/J.Bbrc.2004.04.058  1
2004 Zhao Y, Kwon SW, Anselmo A, Kaur K, White MA. Broad Spectrum Identification of Cellular Small Ubiquitin-related Modifier (SUMO) Substrate Proteins Journal of Biological Chemistry. 279: 20999-21002. PMID 15016812 DOI: 10.1074/Jbc.M401541200  1
2004 Berman DM, Shih IeM, Burke LA, Veenstra TD, Zhao Y, Conrads TP, Kwon SW, Hoang V, Yu LR, Zhou M, Kurman RJ, Petricoin EF, Liotta LA. Profiling the activity of G proteins in patient-derived tissues by rapid affinity-capture of signal transduction proteins (GRASP). Proteomics. 4: 812-8. PMID 14997501 DOI: 10.1002/Pmic.200300579  1
2004 Leak LV, Liotta LA, Krutzsch H, Jones M, Fusaro VA, Ross SJ, Zhao Y, Petricoin EF, Fusaroa VA. Proteomic analysis of lymph. Proteomics. 4: 753-65. PMID 14997497 DOI: 10.1002/Pmic.200300573  1
2003 Zhang W, Zhou G, Zhao Y, White MA, Zhao Y. Affinity enrichment of plasma membrane for proteomics analysis. Electrophoresis. 24: 2855-63. PMID 12929181 DOI: 10.1002/Elps.200305569  1
2003 Kwon SW, Kim SC, Jaunbergs J, Falck JR, Zhao Y. Selective enrichment of thiophosphorylated polypeptides as a tool for the analysis of protein phosphorylation. Molecular & Cellular Proteomics : McP. 2: 242-7. PMID 12734387 DOI: 10.1074/Mcp.M300039-Mcp200  1
2003 Ahram M, Flaig MJ, Gillespie JW, Duray PH, Linehan WM, Ornstein DK, Niu S, Zhao Y, Petricoin EF, Emmert-Buck MR. Evaluation of ethanol-fixed, paraffin-embedded tissues for proteomic applications. Proteomics. 3: 413-21. PMID 12687609 DOI: 10.1002/Pmic.200390056  1
2003 Jiang X, Kim HE, Shu H, Zhao Y, Zhang H, Kofron J, Donnelly J, Burns D, Ng SC, Rosenberg S, Wang X. Distinctive roles of PHAP proteins and prothymosin-alpha in a death regulatory pathway. Science (New York, N.Y.). 299: 223-6. PMID 12522243 DOI: 10.1126/Science.1076807  1
2002 Gilman AG, Simon MI, Bourne HR, Harris BA, Long R, Ross EM, Stull JT, Taussig R, Bourne HR, Arkin AP, Cobb MH, Cyster JG, Devreotes PN, Ferrell JE, Fruman D, ... ... Zhao Y, et al. Overview of the Alliance for Cellular Signaling. Nature. 420: 703-6. PMID 12478301 DOI: 10.1038/Nature01304  1
2002 Zhou G, Li H, DeCamp D, Chen S, Shu H, Gong Y, Flaig M, Gillespie JW, Hu N, Taylor PR, Emmert-Buck MR, Liotta LA, Petricoin EF, Zhao Y. 2D differential in-gel electrophoresis for the identification of esophageal scans cell cancer-specific protein markers. Molecular & Cellular Proteomics : McP. 1: 117-24. PMID 12096129 DOI: 10.1074/Mcp.M100015-Mcp200  1
2002 Ahram M, Best CJ, Flaig MJ, Gillespie JW, Leiva IM, Chuaqui RF, Zhou G, Shu H, Duray PH, Linehan WM, Raffeld M, Ornstein DK, Zhao Y, Petricoin EF, Emmert-Buck MR. Proteomic analysis of human prostate cancer. Molecular Carcinogenesis. 33: 9-15. PMID 11807953 DOI: 10.1002/Mc.10019  1
2001 Phillips GR, Huang JK, Wang Y, Tanaka H, Shapiro L, Zhang W, Shan WS, Arndt K, Frank M, Gordon RE, Gawinowicz MA, Zhao Y, Colman DR. The presynaptic particle web: ultrastructure, composition, dissolution, and reconstitution. Neuron. 32: 63-77. PMID 11604139 DOI: 10.1016/S0896-6273(01)00450-0  1
2001 Gil P, Dewey E, Friml J, Zhao Y, Snowden KC, Putterill J, Palme K, Estelle M, Chory J. BIG: A calossin-like protein required for polar auxin transport in Arabidopsis Genes and Development. 15: 1985-1997. PMID 11485992 DOI: 10.1101/Gad.905201  1
2001 Vassilev A, Kaneko KJ, Shu H, Zhao Y, DePamphilis ML. TEAD/TEF transcription factors utilize the activation domain of YAP65, a Src/Yes-associated protein localized in the cytoplasm. Genes & Development. 15: 1229-41. PMID 11358867 DOI: 10.1101/Gad.888601  1
2001 Keller DM, Zeng X, Wang Y, Zhang QH, Kapoor M, Shu H, Goodman R, Lozano G, Zhao Y, Lu H. A DNA damage-induced p53 serine 392 kinase complex contains CK2, hSpt16, and SSRP1. Molecular Cell. 7: 283-92. PMID 11239457 DOI: 10.1016/S1097-2765(01)00176-9  1
2000 Rout MP, Aitchison JD, Suprapto A, Hjertaas K, Zhao Y, Chait BT. The yeast nuclear pore complex: composition, architecture, and transport mechanism. The Journal of Cell Biology. 148: 635-51. PMID 10684247 DOI: 10.1083/Jcb.148.4.635  1
1998 Zhang JJ, Zhao Y, Chait BT, Lathem WW, Ritzi M, Knippers R, Darnell JE. Ser727-dependent recruitment of MCM5 by Stat1alpha in IFN-gamma-induced transcriptional activation. The Embo Journal. 17: 6963-71. PMID 9843502 DOI: 10.1093/Emboj/17.23.6963  1
1998 Peterson CL, Zhao Y, Chait BT. Subunits of the yeast SWI/SNF complex are members of the actin-related protein (ARP) family Journal of Biological Chemistry. 273: 23641-23644. DOI: 10.1074/Jbc.273.37.23641  1
1997 Qin J, Fenyö D, Zhao Y, Hall WW, Chao DM, Wilson CJ, Young RA, Chait BT. A strategy for rapid, high-confidence protein identification. Analytical Chemistry. 69: 3995-4001. PMID 9322436 DOI: 10.1021/Ac970488V  1
1997 Stewart PL, Chiu CY, Huang S, Muir T, Zhao Y, Chait B, Mathias P, Nemerow GR. Cryo-EM visualization of an exposed RGD epitope on adenovirus that escapes antibody neutralization Embo Journal. 16: 1189-1198. PMID 9135136 DOI: 10.1093/Emboj/16.6.1189  1
1997 Zhao Y, Kent SB, Chait BT. Rapid, sensitive structure analysis of oligosaccharides. Proceedings of the National Academy of Sciences of the United States of America. 94: 1629-33. PMID 9050829 DOI: 10.1073/Pnas.94.5.1629  1
1997 Zhao Y, Chait BT. Probing antibody-antigen interactions by mass spectrometry. Methods in Molecular Biology (Clifton, N.J.). 66: 129-36. PMID 8959711 DOI: 10.1385/0-89603-375-9:129  0.36
1996 Zhao Y, Muir TW, Kent SB, Tischer E, Scardina JM, Chait BT. Mapping protein-protein interactions by affinity-directed mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 93: 4020-4. PMID 8633009 DOI: 10.1073/Pnas.93.9.4020  1
1994 Zhao Y, Chait BT. Protein Epitope Mapping By Mass Spectrometry Analytical Chemistry. 66: 3723-3726. PMID 7528478 DOI: 10.1021/Ac00093A029  1
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