Saptarshi Mukherjee - Related publications

2008- IISER Bhopal 
Protein chemistry, surface chemistry
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25 most relevant papers in past 60 days:
Year Citation  Score
2022 Dogra P, Arya S, Singh AK, Datta A, Mukhopadhyay S. Conformational and Solvation Dynamics of an Amyloidogenic Intrinsically Disordered Domain of a Melanosomal Protein. The Journal of Physical Chemistry. B. PMID 34986640 DOI: 10.1021/acs.jpcb.1c09304   
2022 Dreydoppel M, Balbach J, Weininger U. Monitoring protein unfolding transitions by NMR-spectroscopy. Journal of Biomolecular Nmr. PMID 34984658 DOI: 10.1007/s10858-021-00389-3   
2022 John AM, Sekhon H, Ha JH, Loh SN. Engineering a Fluorescent Protein Color Switch Using Entropy-Driven β-Strand Exchange. Acs Sensors. PMID 35006676 DOI: 10.1021/acssensors.1c02239   
2022 Gavrilov Y, Kümmerer F, Orioli S, Prestel A, Lindorff-Larsen K, Teilum K. Double Mutant of Chymotrypsin Inhibitor 2 Stabilized through Increased Conformational Entropy. Biochemistry. PMID 35019273 DOI: 10.1021/acs.biochem.1c00749   
2022 Parks FC, Sheetz EG, Stutsman SR, Lutolli A, Debnath S, Raghavachari K, Flood AH. Revealing the Hidden Costs of Organization in Host-Guest Chemistry Using Chloride-Binding Foldamers and Their Solvent Dependence. Journal of the American Chemical Society. PMID 35015538 DOI: 10.1021/jacs.1c10758   
2022 Davies CW, Oh AJ, Mroue R, Steffek M, Bruning JM, Xiao Y, Feng S, Jayakar S, Chan E, Arumugam V, Uribe SC, Drummond J, Frommlet A, Lu C, Franke Y, et al. Conformation-locking antibodies for the discovery and characterization of KRAS inhibitors. Nature Biotechnology. PMID 34992247 DOI: 10.1038/s41587-021-01126-9   
2022 Baxa MC, Sosnick TR. Engineered Metal-Binding Sites to Probe Protein Folding Transition States: Psi Analysis. Methods in Molecular Biology (Clifton, N.J.). 2376: 31-63. PMID 34845602 DOI: 10.1007/978-1-0716-1716-8_2   
2022 Mironov V, Shchugoreva IA, Artyushenko PV, Morozov D, Borbone N, Oliviero G, Zamay TN, Moryachkov RV, Kolovskaya OS, Lukyanenko KA, Song Y, Merkuleva IA, Zabluda VN, Peters G, Koroleva LS, et al. Structure and Interaction Based Design of Anti-SARS-CoV-2 Aptamers. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 35025110 DOI: 10.1002/chem.202104481   
2022 Afkham S, Hanaee J, Zakariazadeh M, Fathi F, Shafiee S, Soltani S. Molecular mechanism and thermodynamic study of Rosuvastatin interaction with human serum albumin using a surface plasmon resonance method combined with a multi-spectroscopic, and molecular modeling approach. European Journal of Pharmaceutical Sciences : Official Journal of the European Federation For Pharmaceutical Sciences. 168: 106005. PMID 34688823 DOI: 10.1016/j.ejps.2021.106005   
2022 Zhou H, Wang F, Niu H, Yuan L, Tian J, Cai S, Bi X, Zhou L. Structural studies and molecular dynamic simulations of polyphenol oxidase treated by high pressure processing. Food Chemistry. 372: 131243. PMID 34655831 DOI: 10.1016/j.foodchem.2021.131243   
2022 Das B, Nagano K, Kawai G, Murata A, Nakatani K. 2-Amino-1,8-naphthyridine Dimer (ANP77), a High-Affinity Binder to the Internal Loops of C/CC and T/CC Sites in Double-Stranded DNA. The Journal of Organic Chemistry. 87: 340-350. PMID 34937340 DOI: 10.1021/acs.joc.1c02383   
2022 Chu X, Nagpal S, Muñoz V. Molecular Simulations of Intrinsically Disordered Proteins and Their Binding Mechanisms. Methods in Molecular Biology (Clifton, N.J.). 2376: 343-362. PMID 34845619 DOI: 10.1007/978-1-0716-1716-8_19   
2022 Yadav K, Ghosh S, Barak A, Schaefer W, Subramanian R. Phenylalanine stacking enhances the red fluorescence of biliverdin IXα on UV excitation in sandercyanin fluorescent protein. Febs Letters. PMID 35020202 DOI: 10.1002/1873-3468.14281   
2022 Ravula T, Ramamoorthy A. Measurement of Residual Dipolar Couplings Using Magnetically Aligned and Flipped Nanodiscs. Langmuir : the Acs Journal of Surfaces and Colloids. 38: 244-252. PMID 34965145 DOI: 10.1021/acs.langmuir.1c02449   
2022 Li Z, Maity B, Hishikawa Y, Ueno T, Lu D. Importance of the Subunit-Subunit Interface in Ferritin Disassembly: A Molecular Dynamics Study. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 35015545 DOI: 10.1021/acs.langmuir.1c02753   
2022 Tomofuji Y, Matsuo K, Terao K. Kinetics of denaturation and renaturation processes of double-stranded helical polysaccharide, xanthan in aqueous sodium chloride. Carbohydrate Polymers. 275: 118681. PMID 34742411 DOI: 10.1016/j.carbpol.2021.118681   
2022 Liu Z, Moreira RA, Dujmović A, Liu H, Yang B, Poma AB, Nash MA. Mapping Mechanostable Pulling Geometries of a Therapeutic Anticalin/CTLA-4 Protein Complex. Nano Letters. 22: 179-187. PMID 34918516 DOI: 10.1021/acs.nanolett.1c03584   
2022 Liang S, Liu X, Zhang S, Li M, Zhang Q, Chen J. Binding mechanism of inhibitors to SARS-CoV-2 main protease deciphered by multiple replica molecular dynamics simulations. Physical Chemistry Chemical Physics : Pccp. PMID 34985081 DOI: 10.1039/d1cp04361g   
2022 Guzovsky AB, Schafer NP, Wolynes PG, Ferreiro DU. Localization of Energetic Frustration in Proteins. Methods in Molecular Biology (Clifton, N.J.). 2376: 387-398. PMID 34845622 DOI: 10.1007/978-1-0716-1716-8_22   
2022 Makshakova O, Zykwinska A, Cuenot S, Colliec-Jouault S, Perez S. Three-dimensional structures, dynamics and calcium-mediated interactions of the exopolysaccharide, Infernan, produced by the deep-sea hydrothermal bacterium Alteromonas infernus. Carbohydrate Polymers. 276: 118732. PMID 34823768 DOI: 10.1016/j.carbpol.2021.118732   
2022 Imran M, Iqbal S, Hussain A, Uddin J, Shahzad M, Khaliq T, Razzaq Ahmed A, Mushtaq L, Kashif M, Mahmood K. screening, SAR and kinetic studies of naturally occurring flavonoids against SARS CoV-2 main protease. Arabian Journal of Chemistry. 15: 103473. PMID 34909065 DOI: 10.1016/j.arabjc.2021.103473   
2022 Cao Y, Yang R, Wang W, Jiang S, Yang C, Liu N, Dai H, Lee I, Meng X, Yuan Z. Probing the Formation, Structure and Free Energy Relationships of M Protein Dimers of SARS-CoV-2. Computational and Structural Biotechnology Journal. PMID 35047128 DOI: 10.1016/j.csbj.2022.01.007   
2022 Mudi PK, Mahanty AK, Kotakonda M, Prasad S, Bhattacharyya S, Biswas B. A benzimidazole scaffold as a promising inhibitor against SARS-CoV-2. Journal of Biomolecular Structure & Dynamics. 1-13. PMID 35000553 DOI: 10.1080/07391102.2021.2024448   
2022 Zou W, Huang C, Sun Q, Zhao K, Gao H, Su R, Li Y. A stepwise mutagenesis approach using histidine and acidic amino acid to engineer highly pH-dependent protein switches. 3 Biotech. 12: 21. PMID 34956814 DOI: 10.1007/s13205-021-03079-x   
2022 Oviedo-Rouco S, Spedalieri C, Scocozza MF, Tomasina F, Tórtora V, Radi R, Murgida DH. Correlated electric field modulation of electron transfer parameters and the access to alternative conformations of multifunctional cytochrome c. Bioelectrochemistry (Amsterdam, Netherlands). 143: 107956. PMID 34624727 DOI: 10.1016/j.bioelechem.2021.107956