Carlo Camilloni - Publications

Affiliations: 
Università degli studi di Milano, Italy, Milano, Lombardia, Italy 
Area:
Biophysics, Structural Biology, Computational Biology

72 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Achour A, Broggini L, Han X, Sun R, Santambrogio C, Buratto J, Visentin C, Barbiroli A, De Luca CMG, Sormanni P, Moda F, De Simone A, Sandalova T, Grandori R, Camilloni C, et al. Biochemical and biophysical comparison of human and mouse beta-2 microglobulin reveals the molecular determinants of low amyloid propensity. The Febs Journal. PMID 31420997 DOI: 10.1111/febs.15046  0.8
2019 Löhr T, Camilloni C, Bonomi M, Vendruscolo M. A Practical Guide to the Simultaneous Determination of Protein Structure and Dynamics Using Metainference. Methods in Molecular Biology (Clifton, N.J.). 2022: 313-340. PMID 31396909 DOI: 10.1007/978-1-4939-9608-7_13  1
2018 Marinho da Silva Neto A, Silva SR, Vendruscolo M, Camilloni C, Montalvao RW. A superposition free method for protein conformational ensemble analyses and local clustering based on a differential geometry representation of backbone. Proteins. PMID 30582223 DOI: 10.1002/prot.25652  1
2018 Karlsson E, Andersson E, Dogan J, Gianni S, Jemth P, Camilloni C. A structurally heterogeneous transition state underlies coupled binding and folding of disordered proteins. The Journal of Biological Chemistry. PMID 30514761 DOI: 10.1074/jbc.RA118.005854  0.48
2018 Waudby CA, Wlodarski T, Karyadi ME, Cassaignau AME, Chan SHS, Wentink AS, Schmidt-Engler JM, Camilloni C, Vendruscolo M, Cabrita LD, Christodoulou J. Systematic mapping of free energy landscapes of a growing filamin domain during biosynthesis. Proceedings of the National Academy of Sciences of the United States of America. PMID 30201720 DOI: 10.1073/pnas.1716252115  1
2018 Troilo F, Bonetti D, Camilloni C, Toto A, Longhi S, Brunori M, Gianni S. Folding Mechanism of the SH3 Domain from Grb2. The Journal of Physical Chemistry. B. PMID 30091591 DOI: 10.1021/acs.jpcb.8b06320  0.48
2018 Tomba G, Camilloni C, Vendruscolo M. Determination of the conformational states of strychnine using NMR residual dipolar couplings in a tensor-free approach. Methods (San Diego, Calif.). PMID 30036639 DOI: 10.1016/j.ymeth.2018.07.005  1
2018 Papaleo E, Camilloni C, Teilum K, Vendruscolo M, Lindorff-Larsen K. Molecular dynamics ensemble refinement of the heterogeneous native state of NCBD using chemical shifts and NOEs. Peerj. 6: e5125. PMID 30013831 DOI: 10.7717/peerj.5125  1
2018 Possenti A, Vendruscolo M, Camilloni C, Tiana G. A method for partitioning the information contained in a protein sequence between its structure and function. Proteins. PMID 29790601 DOI: 10.1002/prot.25527  1
2018 Capelli R, Tiana G, Camilloni C. An implementation of the maximum-caliber principle by replica-averaged time-resolved restrained simulations. The Journal of Chemical Physics. 148: 184114. PMID 29764124 DOI: 10.1063/1.5030339  0.32
2018 Le Marchand T, de Rosa M, Salvi N, Sala BM, Andreas LB, Barbet-Massin E, Sormanni P, Barbiroli A, Porcari R, Sousa Mota C, de Sanctis D, Bolognesi M, Emsley L, Bellotti V, Blackledge M, ... Camilloni C, et al. Conformational dynamics in crystals reveal the molecular bases for D76N beta-2 microglobulin aggregation propensity. Nature Communications. 9: 1658. PMID 29695721 DOI: 10.1038/s41467-018-04078-y  0.8
2017 Piovesan D, Tabaro F, Paladin L, Necci M, Micetic I, Camilloni C, Davey N, Dosztányi Z, Mészáros B, Monzon AM, Parisi G, Schad E, Sormanni P, Tompa P, Vendruscolo M, et al. MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins. Nucleic Acids Research. PMID 29136219 DOI: 10.1093/nar/gkx1071  1
2017 Bonomi M, Camilloni C. Integrative structural and dynamical biology with PLUMED-ISDB. Bioinformatics (Oxford, England). 33: 3999-4000. PMID 28961689 DOI: 10.1093/bioinformatics/btx529  0.68
2017 Heller GT, Aprile FA, Bonomi M, Camilloni C, De Simone A, Vendruscolo M. Sequence Specificity in the Entropy-Driven Binding of a Small Molecule and a Disordered Peptide. Journal of Molecular Biology. PMID 28743590 DOI: 10.1016/j.jmb.2017.07.016  1
2017 Löhr T, Jussupow A, Camilloni C. Metadynamic metainference: Convergence towards force field independent structural ensembles of a disordered peptide. The Journal of Chemical Physics. 146: 165102. PMID 28456189 DOI: 10.1063/1.4981211  0.32
2017 Kukic P, Pustovalova Y, Camilloni C, Gianni S, Korzhnev DM, Vendruscolo M. Structural characterization of the early events in the nucleation-condensation mechanism in a protein folding process. Journal of the American Chemical Society. PMID 28401755 DOI: 10.1021/jacs.7b01540  1
2017 Hultqvist G, Åberg E, Camilloni C, Sundell GN, Andersson E, Dogan J, Chi CN, Vendruscolo M, Jemth P. Emergence and evolution of an interaction between intrinsically disordered proteins. Elife. 6. PMID 28398197 DOI: 10.7554/eLife.16059  1
2017 Sormanni P, Piovesan D, Heller GT, Bonomi M, Kukic P, Camilloni C, Fuxreiter M, Dosztanyi Z, Pappu RV, Babu MM, Longhi S, Tompa P, Dunker AK, Uversky VN, Tosatto SC, et al. Simultaneous quantification of protein order and disorder. Nature Chemical Biology. 13: 339-342. PMID 28328918 DOI: 10.1038/nchembio.2331  1
2017 Borkar AN, Vallurupalli P, Camilloni C, Kay LE, Vendruscolo M. Simultaneous NMR characterisation of multiple minima in the free energy landscape of an RNA UUCG tetraloop. Physical Chemistry Chemical Physics : Pccp. PMID 28067358 DOI: 10.1039/c6cp08313g  1
2017 Bonomi M, Heller GT, Camilloni C, Vendruscolo M. Principles of protein structural ensemble determination. Current Opinion in Structural Biology. 42: 106-116. PMID 28063280 DOI: 10.1016/j.sbi.2016.12.004  1
2016 Holliday MJ, Camilloni C, Armstrong GS, Vendruscolo M, Eisenmesser EZ. Networks of Dynamic Allostery Regulate Enzyme Function. Structure (London, England : 1993). PMID 28089447 DOI: 10.1016/j.str.2016.12.003  1
2016 Meloni R, Camilloni C, Tiana G. Properties of low-dimensional collective variables in the molecular dynamics of biopolymers. Physical Review. E. 94: 052406. PMID 27967023 DOI: 10.1103/PhysRevE.94.052406  0.32
2016 Bonomi M, Camilloni C, Vendruscolo M. Metadynamic metainference: Enhanced sampling of the metainference ensemble using metadynamics. Scientific Reports. 6: 31232. PMID 27561930 DOI: 10.1038/srep31232  1
2016 Camilloni C, Bonetti D, Morrone A, Giri R, Dobson CM, Brunori M, Gianni S, Vendruscolo M. Towards a structural biology of the hydrophobic effect in protein folding. Scientific Reports. 6: 28285. PMID 27461719 DOI: 10.1038/srep28285  1
2016 Borkar AN, Bardaro MF, Camilloni C, Aprile FA, Varani G, Vendruscolo M. Structure of a low-population binding intermediate in protein-RNA recognition. Proceedings of the National Academy of Sciences of the United States of America. PMID 27286828 DOI: 10.1073/pnas.1521349113  0.76
2016 Camilloni C, Sala BM, Sormanni P, Porcari R, Corazza A, De Rosa M, Zanini S, Barbiroli A, Esposito G, Bolognesi M, Bellotti V, Vendruscolo M, Ricagno S. Rational design of mutations that change the aggregation rate of a protein while maintaining its native structure and stability. Scientific Reports. 6: 25559. PMID 27150430 DOI: 10.1038/srep25559  1
2016 Deckert A, Waudby CA, Wlodarski T, Wentink AS, Wang X, Kirkpatrick JP, Paton JF, Camilloni C, Kukic P, Dobson CM, Vendruscolo M, Cabrita LD, Christodoulou J. Structural characterization of the interaction of α-synuclein nascent chains with the ribosomal surface and trigger factor. Proceedings of the National Academy of Sciences of the United States of America. PMID 27092002 DOI: 10.1073/pnas.1519124113  1
2016 Bonetti D, Camilloni C, Visconti L, Longhi S, Brunori M, Vendruscolo M, Gianni S. Identification and Structural Characterization of an Intermediate in the Folding of the Measles Virus X domain. The Journal of Biological Chemistry. PMID 27002146 DOI: 10.1074/jbc.M116.721126  1
2016 Cabrita LD, Cassaignau AM, Launay HM, Waudby CA, Wlodarski T, Camilloni C, Karyadi ME, Robertson AL, Wang X, Wentink AS, Goodsell LS, Woolhead CA, Vendruscolo M, Dobson CM, Christodoulou J. A structural ensemble of a ribosome-nascent chain complex during cotranslational protein folding. Nature Structural & Molecular Biology. PMID 26926436 DOI: 10.1038/nsmb.3182  1
2016 Toto A, Camilloni C, Giri R, Brunori M, Vendruscolo M, Gianni S. Molecular Recognition by Templated Folding of an Intrinsically Disordered Protein. Scientific Reports. 6: 21994. PMID 26912067 DOI: 10.1038/srep21994  1
2016 Bonomi M, Camilloni C, Cavalli A, Vendruscolo M. Metainference: A Bayesian inference method for heterogeneous systems. Science Advances. 2: e1501177. PMID 26844300 DOI: 10.1126/sciadv.1501177  1
2015 Camilloni C, Vendruscolo M. Using pseudocontact shifts and residual dipolar couplings as exact NMR restraints for the determination of protein structural ensembles. Biochemistry. PMID 26624789 DOI: 10.1021/acs.biochem.5b01138  1
2015 Kukic P, Lundström P, Camilloni C, Evenäs J, Akke M, Vendruscolo M. Structural insights into the calcium-mediated allosteric transition in the C-terminal domain of calmodulin from NMR measurements. Biochemistry. PMID 26618792 DOI: 10.1021/acs.biochem.5b00961  1
2015 Kukic P, Kannan A, Dijkstra MJ, Abeln S, Camilloni C, Vendruscolo M. Mapping the Protein Fold Universe Using the CamTube Force Field in Molecular Dynamics Simulations. Plos Computational Biology. 11: e1004435. PMID 26505754 DOI: 10.1371/journal.pcbi.1004435  0.76
2015 Granata D, Baftizadeh F, Habchi J, Galvagnion C, De Simone A, Camilloni C, Laio A, Vendruscolo M. The inverted free energy landscape of an intrinsically disordered peptide by simulations and experiments. Scientific Reports. 5: 15449. PMID 26498066 DOI: 10.1038/srep15449  0.76
2015 Borkar AN, Vallurupalli P, Camilloni C, Kay LE, Vendruscolo M. 89 Constructing free energy landscapes of RNAs at atomic resolution and characterisation of their excited states. Journal of Biomolecular Structure & Dynamics. 33: 58. PMID 26103301 DOI: 10.1080/07391102.2015.1032706  1
2015 Brewer KD, Bacaj T, Cavalli A, Camilloni C, Swarbrick JD, Liu J, Zhou A, Zhou P, Barlow N, Xu J, Seven AB, Prinslow EA, Voleti R, Häussinger D, Bonvin AM, et al. Dynamic binding mode of a Synaptotagmin-1-SNARE complex in solution. Nature Structural & Molecular Biology. 22: 555-64. PMID 26030874 DOI: 10.1038/nsmb.3035  1
2015 Holliday MJ, Camilloni C, Armstrong GS, Isern NG, Zhang F, Vendruscolo M, Eisenmesser EZ. Structure and Dynamics of GeoCyp: A Thermophilic Cyclophilin with a Novel Substrate Binding Mechanism That Functions Efficiently at Low Temperatures. Biochemistry. 54: 3207-17. PMID 25923019 DOI: 10.1021/acs.biochem.5b00263  0.76
2015 Kukic P, Alvin Leung HT, Bemporad F, Aprile FA, Kumita JR, De Simone A, Camilloni C, Vendruscolo M. Structure and dynamics of the integrin LFA-1 I-domain in the inactive state underlie its inside-out/outside-in signaling and allosteric mechanisms. Structure (London, England : 1993). 23: 745-53. PMID 25773142 DOI: 10.1016/j.str.2014.12.020  0.76
2015 Sormanni P, Camilloni C, Fariselli P, Vendruscolo M. The s2D method: simultaneous sequence-based prediction of the statistical populations of ordered and disordered regions in proteins. Journal of Molecular Biology. 427: 982-96. PMID 25534081 DOI: 10.1016/j.jmb.2014.12.007  1
2015 Porcari R, Proukakis C, Waudby CA, Bolognesi B, Mangione PP, Paton JF, Mullin S, Cabrita LD, Penco A, Relini A, Verona G, Vendruscolo M, Stoppini M, Tartaglia GG, Camilloni C, et al. The H50Q mutation induces a 10-fold decrease in the solubility of α-synuclein. The Journal of Biological Chemistry. 290: 2395-404. PMID 25505181 DOI: 10.1074/jbc.M114.610527  1
2015 Camilloni C, Vendruscolo M. A tensor-free method for the structural and dynamical refinement of proteins using residual dipolar couplings. The Journal of Physical Chemistry. B. 119: 653-61. PMID 24824082 DOI: 10.1021/jp5021824  1
2014 Meloni R, Camilloni C, Tiana G. Sampling the Denatured State of Polypeptides in Water, Urea, and Guanidine Chloride to Strict Equilibrium Conditions with the Help of Massively Parallel Computers. Journal of Chemical Theory and Computation. 10: 846-54. PMID 26580058 DOI: 10.1021/ct400879v  0.32
2014 Gianni S, Camilloni C, Giri R, Toto A, Bonetti D, Morrone A, Sormanni P, Brunori M, Vendruscolo M. Understanding the frustration arising from the competition between function, misfolding, and aggregation in a globular protein. Proceedings of the National Academy of Sciences of the United States of America. 111: 14141-6. PMID 25228761 DOI: 10.1073/pnas.1405233111  0.76
2014 Leung HT, Kukic P, Camilloni C, Bemporad F, De Simone A, Aprile FA, Kumita JR, Vendruscolo M. NMR characterization of the conformational fluctuations of the human lymphocyte function-associated antigen-1 I-domain. Protein Science : a Publication of the Protein Society. 23: 1596-606. PMID 25147050 DOI: 10.1002/pro.2538  0.76
2014 Camilloni C, Sahakyan AB, Holliday MJ, Isern NG, Zhang F, Eisenmesser EZ, Vendruscolo M. Cyclophilin A catalyzes proline isomerization by an electrostatic handle mechanism. Proceedings of the National Academy of Sciences of the United States of America. 111: 10203-8. PMID 24982184 DOI: 10.1073/pnas.1404220111  0.76
2014 Camilloni C, Vendruscolo M. Statistical mechanics of the denatured state of a protein using replica-averaged metadynamics. Journal of the American Chemical Society. 136: 8982-91. PMID 24884637 DOI: 10.1021/ja5027584  1
2014 Blombach F, Launay H, Snijders AP, Zorraquino V, Wu H, de Koning B, Brouns SJ, Ettema TJ, Camilloni C, Cavalli A, Vendruscolo M, Dickman MJ, Cabrita LD, La Teana A, Benelli D, et al. Archaeal MBF1 binds to 30S and 70S ribosomes via its helix-turn-helix domain. The Biochemical Journal. 462: 373-84. PMID 24825021 DOI: 10.1042/BJ20131474  0.76
2014 Krieger JM, Fusco G, Lewitzky M, Simister PC, Marchant J, Camilloni C, Feller SM, De Simone A. Conformational recognition of an intrinsically disordered protein. Biophysical Journal. 106: 1771-9. PMID 24739176 DOI: 10.1016/j.bpj.2014.03.004  0.76
2014 Fu B, Sahakyan AB, Camilloni C, Tartaglia GG, Paci E, Caflisch A, Vendruscolo M, Cavalli A. ALMOST: an all atom molecular simulation toolkit for protein structure determination. Journal of Computational Chemistry. 35: 1101-5. PMID 24676684 DOI: 10.1002/jcc.23588  0.76
2014 Kukic P, Camilloni C, Cavalli A, Vendruscolo M. Determination of the individual roles of the linker residues in the interdomain motions of calmodulin using NMR chemical shifts. Journal of Molecular Biology. 426: 1826-38. PMID 24530797 DOI: 10.1016/j.jmb.2014.02.002  1
2014 Kannan A, Camilloni C, Sahakyan AB, Cavalli A, Vendruscolo M. A conformational ensemble derived using NMR methyl chemical shifts reveals a mechanical clamping transition that gates the binding of the HU protein to DNA. Journal of the American Chemical Society. 136: 2204-7. PMID 24517490 DOI: 10.1021/ja4105396  0.76
2014 Montalvao R, Camilloni C, De Simone A, Vendruscolo M. New opportunities for tensor-free calculations of residual dipolar couplings for the study of protein dynamics. Journal of Biomolecular Nmr. 58: 233-8. PMID 24477919 DOI: 10.1007/s10858-013-9801-3  0.76
2014 Kendrick AA, Holliday MJ, Isern NG, Zhang F, Camilloni C, Huynh C, Vendruscolo M, Armstrong G, Eisenmesser EZ. The dynamics of interleukin-8 and its interaction with human CXC receptor I peptide. Protein Science : a Publication of the Protein Society. 23: 464-80. PMID 24442768 DOI: 10.1002/pro.2430  0.76
2013 Camilloni C, Cavalli A, Vendruscolo M. Replica-Averaged Metadynamics. Journal of Chemical Theory and Computation. 9: 5610-7. PMID 26592295 DOI: 10.1021/ct4006272  1
2013 Waudby CA, Camilloni C, Fitzpatrick AW, Cabrita LD, Dobson CM, Vendruscolo M, Christodoulou J. In-cell NMR characterization of the secondary structure populations of a disordered conformation of α-synuclein within E. coli cells. Plos One. 8: e72286. PMID 23991082 DOI: 10.1371/journal.pone.0072286  0.76
2013 Camilloni C, Vendruscolo M. A relationship between the aggregation rates of α-synuclein variants and the β-sheet populations in their monomeric forms. The Journal of Physical Chemistry. B. 117: 10737-41. PMID 23941114 DOI: 10.1021/jp405614j  1
2013 Granata D, Camilloni C, Vendruscolo M, Laio A. Characterization of the free-energy landscapes of proteins by NMR-guided metadynamics. Proceedings of the National Academy of Sciences of the United States of America. 110: 6817-22. PMID 23572592 DOI: 10.1073/pnas.1218350110  1
2013 Cavalli A, Camilloni C, Vendruscolo M. Molecular dynamics simulations with replica-averaged structural restraints generate structural ensembles according to the maximum entropy principle. The Journal of Chemical Physics. 138: 094112. PMID 23485282 DOI: 10.1063/1.4793625  1
2013 Camilloni C, Cavalli A, Vendruscolo M. Assessment of the use of NMR chemical shifts as replica-averaged structural restraints in molecular dynamics simulations to characterize the dynamics of proteins. The Journal of Physical Chemistry. B. 117: 1838-43. PMID 23327201 DOI: 10.1021/jp3106666  1
2012 Tiana G, Camilloni C. Ratcheted molecular-dynamics simulations identify efficiently the transition state of protein folding. The Journal of Chemical Physics. 137: 235101. PMID 23267502 DOI: 10.1063/1.4769085  0.32
2012 Heidarsson PO, Valpapuram I, Camilloni C, Imparato A, Tiana G, Poulsen FM, Kragelund BB, Cecconi C. A highly compliant protein native state with a spontaneous-like mechanical unfolding pathway. Journal of the American Chemical Society. 134: 17068-75. PMID 23004011 DOI: 10.1021/ja305862m  0.76
2012 Camilloni C, De Simone A, Vranken WF, Vendruscolo M. Determination of secondary structure populations in disordered states of proteins using nuclear magnetic resonance chemical shifts. Biochemistry. 51: 2224-31. PMID 22360139 DOI: 10.1021/bi3001825  0.76
2012 Camilloni C, Robustelli P, De Simone A, Cavalli A, Vendruscolo M. Characterization of the conformational equilibrium between the two major substates of RNase A using NMR chemical shifts. Journal of the American Chemical Society. 134: 3968-71. PMID 22320129 DOI: 10.1021/ja210951z  1
2012 Camilloni C, Schaal D, Schweimer K, Schwarzinger S, De Simone A. Energy landscape of the prion protein helix 1 probed by metadynamics and NMR. Biophysical Journal. 102: 158-67. PMID 22225810 DOI: 10.1016/j.bpj.2011.12.003  0.76
2011 Camilloni C, Broglia RA, Tiana G. Hierarchy of folding and unfolding events of protein G, CI2, and ACBP from explicit-solvent simulations. The Journal of Chemical Physics. 134: 045105. PMID 21280806 DOI: 10.1063/1.3523345  0.32
2010 Caldarini M, Sutto L, Camilloni C, Vasile F, Broglia RA, Tiana G. Identification of the folding inhibitors of hen-egg lysozyme: gathering the right tools. European Biophysics Journal : Ebj. 39: 911-9. PMID 19326112 DOI: 10.1007/s00249-009-0441-1  0.32
2008 Calosci N, Chi CN, Richter B, Camilloni C, Engström A, Eklund L, Travaglini-Allocatelli C, Gianni S, Vendruscolo M, Jemth P. Comparison of successive transition states for folding reveals alternative early folding pathways of two homologous proteins. Proceedings of the National Academy of Sciences of the United States of America. 105: 19241-6. PMID 19033470 DOI: 10.1073/pnas.0804774105  1
2008 Camilloni C, Sutto L, Provasi D, Tiana G, Broglia RA. Early events in protein folding: Is there something more than hydrophobic burst? Protein Science : a Publication of the Protein Society. 17: 1424-33. PMID 18511538 DOI: 10.1110/ps.035105.108  0.32
2008 Verkhivker G, Tiana G, Camilloni C, Provasi D, Broglia RA. Atomistic simulations of the HIV-1 protease folding inhibition. Biophysical Journal. 95: 550-62. PMID 18375506 DOI: 10.1529/biophysj.107.127621  0.32
2008 Camilloni C, Provasi D, Tiana G, Broglia RA. Exploring the protein G helix free-energy surface by solute tempering metadynamics. Proteins. 71: 1647-54. PMID 18076039 DOI: 10.1002/prot.21852  0.32
2007 Camilloni C, Provasi D, Tiana G, Broglia RA. Optical absorption of a green fluorescent protein variant: environment effects in a density functional study. The Journal of Physical Chemistry. B. 111: 10807-12. PMID 17713940 DOI: 10.1021/jp072511e  0.32
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