David De Sancho - Publications

Affiliations: 
Chemistry University of the Basque Country, Leioa, Euskadi, Spain 
 Donostia International Physics Center 
Area:
Biophysics, molecular simulation, protein folding

33 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Aduriz-Arrizabalaga J, Lopez X, De Sancho D. Atomistic molecular simulations of Aβ-Zn conformational ensembles. Proteins. PMID 37746887 DOI: 10.1002/prot.26590  0.305
2022 De Sancho D, Muñoz V. Prediction of Folding and Unfolding Rates of Proteins with Simple Models. Methods in Molecular Biology (Clifton, N.J.). 2376: 365-372. PMID 34845620 DOI: 10.1007/978-1-0716-1716-8_20  0.669
2020 Subramanian S, Golla H, Divakar K, Kannan A, De Sancho D, Naganathan AN. Slow Folding of a Helical Protein: Large Barriers, Strong Internal Friction, or a Shallow, Bumpy Landscape? The Journal of Physical Chemistry. B. PMID 32955882 DOI: 10.1021/Acs.Jpcb.0C05976  0.743
2018 De Sancho D, Schönfelder J, Best RB, Perez-Jimenez R, Muñoz V. Instrumental Effects in the Dynamics of an Ultrafast Folding Protein under Mechanical Force. The Journal of Physical Chemistry. B. PMID 30129367 DOI: 10.1021/Acs.Jpcb.8B05975  0.729
2018 De Sancho D, Kubas A, Wang PH, Blumberger J, Best RB. Correction to Identification of Mutational Hot Spots for Substrate Diffusion: Application to Myoglobin. Journal of Chemical Theory and Computation. PMID 29708751 DOI: 10.1021/Acs.Jctc.8B00325  0.477
2018 Schönfelder J, Alonso-Caballero A, De Sancho D, Perez-Jimenez R. The life of proteins under mechanical force. Chemical Society Reviews. PMID 29473060 DOI: 10.1039/C7Cs00820A  0.38
2017 Sharma R, De Sancho D, Muñoz V. Interplay between the folding mechanism and binding modes in folding coupled to binding processes. Physical Chemistry Chemical Physics : Pccp. PMID 29044256 DOI: 10.1039/c7cp04748g  0.6
2017 Manteca A, Alonso-Caballero Á, Fertin M, Poly S, De Sancho D, Perez-Jimenez R. The influence of disulfide bonds on the mechanical stability of proteins is context dependent. The Journal of Biological Chemistry. 292: 13374-13380. PMID 28642368 DOI: 10.1074/Jbc.M117.784934  0.397
2017 Kubas A, Orain C, De Sancho D, Saujet L, Sensi M, Gauquelin C, Meynial-Salles I, Soucaille P, Bottin H, Baffert C, Fourmond V, Best RB, Blumberger J, Léger C. Mechanism of O2 diffusion and reduction in FeFe hydrogenases. Nature Chemistry. 9: 88-95. PMID 27995927 DOI: 10.1038/Nchem.2592  0.481
2016 Schönfelder J, De Sancho D, Perez-Jimenez R. The Power of Force: Insights into the Protein Folding Process Using Single-Molecule Force Spectroscopy. Journal of Molecular Biology. 428: 4245-4257. PMID 27639437 DOI: 10.1016/J.Jmb.2016.09.006  0.328
2016 de Sancho D, Best RB. Reconciling Intermediates in Mechanical Unfolding Experiments with Two-State Protein Folding in Bulk. The Journal of Physical Chemistry Letters. 7: 3798-3803. PMID 27626458 DOI: 10.1021/acs.jpclett.6b01722  0.685
2016 Zheng W, de Sancho D, Best RB. Modulation of Folding Internal Friction by Local and Global Barrier Heights. The Journal of Physical Chemistry Letters. 7: 1028-34. PMID 26947615 DOI: 10.1021/acs.jpclett.6b00329  0.646
2016 Sirur A, De Sancho D, Best RB. Markov state models of protein misfolding. The Journal of Chemical Physics. 144: 075101. PMID 26897000 DOI: 10.1063/1.4941579  0.663
2015 De Sancho D, Kubas A, Wang PH, Blumberger J, Best RB. Identification of Mutational Hot Spots for Substrate Diffusion: Application to Myoglobin. Journal of Chemical Theory and Computation. 11: 1919-27. PMID 26574395 DOI: 10.1021/Ct5011455  0.577
2015 Naganathan AN, De Sancho D. Bridging Experiments and Native-Centric Simulations of a Downhill Folding Protein. The Journal of Physical Chemistry. B. 119: 14925-33. PMID 26524123 DOI: 10.1021/Acs.Jpcb.5B09568  0.733
2015 Kemplen KR, De Sancho D, Clarke J. The response of Greek key proteins to changes in connectivity depends on the nature of their secondary structure. Journal of Molecular Biology. 427: 2159-65. PMID 25861761 DOI: 10.1016/J.Jmb.2015.03.020  0.573
2015 Zheng W, De Sancho D, Hoppe T, Best RB. Dependence of internal friction on folding mechanism. Journal of the American Chemical Society. 137: 3283-90. PMID 25721133 DOI: 10.1021/ja511609u  0.573
2014 Rogers JM, Oleinikovas V, Shammas SL, Wong CT, De Sancho D, Baker CM, Clarke J. Interplay between partner and ligand facilitates the folding and binding of an intrinsically disordered protein. Proceedings of the National Academy of Sciences of the United States of America. 111: 15420-5. PMID 25313042 DOI: 10.1073/Pnas.1409122111  0.603
2014 de Sancho D, Sirur A, Best RB. Molecular origins of internal friction effects on protein-folding rates. Nature Communications. 5: 4307. PMID 24986114 DOI: 10.1038/ncomms5307  0.676
2014 Kubas A, De Sancho D, Best RB, Blumberger J. Aerobic damage to [FeFe]-hydrogenases: activation barriers for the chemical attachment of O2. Angewandte Chemie (International Ed. in English). 53: 4081-4. PMID 24615978 DOI: 10.1002/Anie.201400534  0.534
2013 De Sancho D, Mittal J, Best RB. Folding Kinetics and Unfolded State Dynamics of the GB1 Hairpin from Molecular Simulation. Journal of Chemical Theory and Computation. 9: 1743-53. PMID 26587632 DOI: 10.1021/Ct301033R  0.638
2013 Carter JW, Baker CM, Best RB, De Sancho D. Engineering folding dynamics from two-state to downhill: application to λ-repressor. The Journal of Physical Chemistry. B. 117: 13435-43. PMID 24079652 DOI: 10.1021/jp405904g  0.649
2012 Best RB, De Sancho D, Mittal J. Residue-specific α-helix propensities from molecular simulation Biophysical Journal. 102: 1462-1467. PMID 22455930 DOI: 10.1016/J.Bpj.2012.02.024  0.607
2011 De Sancho D, Best RB. Modulation of an IDP binding mechanism and rates by helix propensity and non-native interactions: association of HIF1α with CBP. Molecular Biosystems. 8: 256-67. PMID 21892446 DOI: 10.1039/c1mb05252g  0.601
2011 De Sancho D, Muñoz V. Integrated prediction of protein folding and unfolding rates from only size and structural class. Physical Chemistry Chemical Physics : Pccp. 13: 17030-43. PMID 21670826 DOI: 10.1039/C1Cp20402E  0.652
2011 De Sancho D, Best RB. What is the time scale for α-helix nucleation? Journal of the American Chemical Society. 133: 6809-16. PMID 21480610 DOI: 10.1021/ja200834s  0.649
2009 De Sancho D, Doshi U, Muñoz V. Protein folding rates and stability: how much is there beyond size? Journal of the American Chemical Society. 131: 2074-5. PMID 19170596 DOI: 10.1021/Ja808843H  0.774
2008 Muñoz V, Sadqi M, Naganathan AN, de Sancho D. Exploiting the downhill folding regime via experiment. Hfsp Journal. 2: 342-53. PMID 19436488 DOI: 10.2976/1.2988030  0.778
2008 de Sancho D, Rey A. Energy minimizations with a combination of two knowledge-based potentials for protein folding. Journal of Computational Chemistry. 29: 1684-92. PMID 18351603 DOI: 10.1002/jcc.20924  0.721
2007 De Sancho D, Rey A. Evaluation of coarse grained models for hydrogen bonds in proteins. Journal of Computational Chemistry. 28: 1187-99. PMID 17299766 DOI: 10.1002/jcc.20619  0.693
2007 Prieto L, de Sancho D, Rey A. Thermodynamics of Go-type models for protein folding. The Journal of Chemical Physics. 123: 154903. PMID 16252968 DOI: 10.1063/1.2064888  0.763
2006 de Sancho D, Rey A. Assessment of protein folding potentials with an evolutionary method. The Journal of Chemical Physics. 125: 014904. PMID 16863330 DOI: 10.1063/1.2210931  0.746
2005 De Sancho D, Prieto L, Rubio AM, Rey A. Evolutionary method for the assembly of rigid protein fragments. Journal of Computational Chemistry. 26: 131-41. PMID 15584079 DOI: 10.1002/jcc.20150  0.724
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