Forest M. White, Ph.D. - Publications

Affiliations: 
Biological Engineering Massachusetts Institute of Technology, Cambridge, MA, United States 
Area:
protein phosphorylation, signal transduction cascades
Website:
http://web.mit.edu/fwhitelab/

118 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Del Rosario BC, Kriz AJ, Del Rosario AM, Anselmo A, Frye CJ, White FM, Sadreyev RI, Lee JT. Exploration of CTCF post-translation modifications uncovers Serine-224 phosphorylation by PLK1 at pericentric regions during the G2/M transition. Elife. 8. PMID 30676316 DOI: 10.7554/eLife.42341  0.48
2018 Randall EC, Emdal KB, Laramy JK, Kim M, Roos A, Calligaris D, Regan MS, Gupta SK, Mladek AC, Carlson BL, Johnson AJ, Lu FK, Xie XS, Joughin BA, Reddy RJ, ... ... White FM, et al. Integrated mapping of pharmacokinetics and pharmacodynamics in a patient-derived xenograft model of glioblastoma. Nature Communications. 9: 4904. PMID 30464169 DOI: 10.1038/s41467-018-07334-3  0.48
2018 Johnson H, White FM. Quantitative Analysis of Tyrosine Kinase Signaling Across Differentially Embedded Human Glioblastoma Tumors. Methods in Molecular Biology (Clifton, N.J.). 1711: 149-164. PMID 29344889 DOI: 10.1007/978-1-4939-7493-1_8  1
2017 Soltis AR, Kennedy NJ, Xin X, Zhou F, Ficarro SB, Yap YS, Matthews BJ, Lauffenburger DA, White FM, Marto JA, Davis RJ, Fraenkel E. Hepatic Dysfunction Caused by Consumption of a High-Fat Diet. Cell Reports. 21: 3317-3328. PMID 29241556 DOI: 10.1016/j.celrep.2017.11.059  0.4
2017 Jadwin JA, Curran TG, Lafontaine AT, White FM, Mayer BJ. Src Homology 2 domains enhance tyrosine phosphorylation in vivo by protecting binding sites in their target proteins from dephosphorylation. The Journal of Biological Chemistry. PMID 29162725 DOI: 10.1074/jbc.M117.794412  0.76
2017 Emdal KB, Dittmann A, Reddy RJ, Lescarbeau RS, Moores SL, Laquerre S, White FM. Characterization of in vivo resistance to osimertinib and JNJ-61186372, an EGFR/Met bi-specific antibody, reveals unique and consensus mechanisms of resistance. Molecular Cancer Therapeutics. PMID 28830985 DOI: 10.1158/1535-7163.MCT-17-0413  0.68
2016 Pirhaji L, Milani P, Leidl M, Curran T, Avila-Pacheco J, Clish CB, White FM, Saghatelian A, Fraenkel E. Revealing disease-associated pathways by network integration of untargeted metabolomics. Nature Methods. PMID 27479327 DOI: 10.1038/nmeth.3940  1
2016 Tuncbag N, Milani P, Pokorny JL, Johnson H, Sio TT, Dalin S, Iyekegbe DO, White FM, Sarkaria JN, Fraenkel E. Network Modeling Identifies Patient-specific Pathways in Glioblastoma. Scientific Reports. 6: 28668. PMID 27354287 DOI: 10.1038/srep28668  1
2016 Lescarbeau RS, Lei L, Bakken KK, Sims PA, Sarkaria JN, Canoll P, White FM. Quantitative Phosphoproteomics Reveals Wee1 Kinase as a Therapeutic Target in a Model of Proneural Glioblastoma. Molecular Cancer Therapeutics. PMID 27196784 DOI: 10.1158/1535-7163.MCT-15-0692-T  0.68
2016 Jadwin JA, Oh D, Curran TG, Ogiue-Ikeda M, Jia L, White FM, Machida K, Yu J, Mayer BJ. Time-resolved multimodal analysis of Src Homology 2 (SH2) domain binding in signaling by receptor tyrosine kinases. Elife. 5. PMID 27071344 DOI: 10.7554/eLife.11835  1
2016 Kravchenko-Balasha N, Johnson H, White FM, Heath JR, Levine RD. A Thermodynamic Based Interpretation of Protein Expression Heterogeneity in Different GBM Tumors Identifies Tumor Specific Unbalanced Processes. The Journal of Physical Chemistry. B. PMID 27035264 DOI: 10.1021/acs.jpcb.6b01692  1
2016 Lescarbeau RS, Lei L, Bakken KK, Sims PA, Sarkaria JN, Canoll P, White FM. Quantitative phosphoproteomics reveals Wee1 kinase as a therapeutic target in a model of proneural glioblastoma. Molecular Cancer Therapeutics. PMID 27009214 DOI: 10.1158/1535-7163.MCT-15-0692  0.68
2016 Reddy RJ, Gajadhar AS, Swenson EJ, Rothenberg DA, Curran TG, White FM. Early signaling dynamics of the epidermal growth factor receptor. Proceedings of the National Academy of Sciences of the United States of America. PMID 26929352 DOI: 10.1073/pnas.1521288113  1
2016 Reddy RJ, Curran TG, Zhang Y, White FM. Measurement of Phosphorylated Peptides with Absolute Quantification. Methods in Molecular Biology (Clifton, N.J.). 1410: 281-92. PMID 26867751 DOI: 10.1007/978-1-4939-3524-6_17  1
2016 Rothenberg DA, Gordon EA, White FM, Lourido S. Identification of Direct Kinase Substrates Using Analogue-Sensitive Alleles. Methods in Molecular Biology (Clifton, N.J.). 1355: 71-84. PMID 26584919 DOI: 10.1007/978-1-4939-3049-4_5  1
2015 Levin VA, Tonge PJ, Gallo JM, Birtwistle MR, Dar AC, Iavarone A, Paddison PJ, Heffron TP, Elmquist WF, Lachowicz JE, Johnson TW, White FM, Sul J, Smith QR, Shen W, et al. CNS Anticancer Drug Discovery and Development Conference White Paper. Neuro-Oncology. 17: vi1-26. PMID 26403167 DOI: 10.1093/neuonc/nov169  1
2015 Hughes SK, Oudin MJ, Tadros J, Neil J, Del Rosario A, Joughin BA, Ritsma L, Wyckoff J, Vasile E, Eddy R, Philippar U, Lussiez A, Condeelis JS, van Rheenen J, White F, et al. PTP1B-dependent regulation of receptor tyrosine kinase signaling by the actin-binding protein Mena. Molecular Biology of the Cell. PMID 26337385 DOI: 10.1091/mbc.E15-06-0442  1
2015 McFaline-Figueroa JL, Braun CJ, Stanciu M, Nagel ZD, Mazzucato P, Sangaraju D, Cerniauskas E, Barford K, Vargas A, Chen Y, Tretyakova N, Lees JA, Hemann MT, White FM, Samson LD. Minor Changes in Expression of the Mismatch Repair Protein MSH2 Exert a Major Impact on Glioblastoma Response to Temozolomide. Cancer Research. PMID 26025730 DOI: 10.1158/0008-5472.CAN-14-3616  1
2015 Bryson BD, White FM. Quantitative Profiling of Lysine Acetylation Reveals Dynamic Crosstalk between Receptor Tyrosine Kinases and Lysine Acetylation. Plos One. 10: e0126242. PMID 25978619 DOI: 10.1371/journal.pone.0126242  0.76
2015 Gajadhar AS, Johnson H, Slebos RJ, Shaddox K, Wiles K, Washington MK, Herline AJ, Levine DA, Liebler DC, White FM. Phosphotyrosine signaling analysis in human tumors is confounded by systemic ischemia-driven artifacts and intra-specimen heterogeneity. Cancer Research. 75: 1495-503. PMID 25670172 DOI: 10.1158/0008-5472.CAN-14-2309  1
2015 Bryson BD, Del Rosario AM, Gootenberg JS, Yaffe MB, White FM. Engineered bromodomains to explore the acetylproteome. Proteomics. 15: 1470-5. PMID 25641834 DOI: 10.1002/pmic.201400401  1
2015 Curran TG, Zhang Y, Ma DJ, Sarkaria JN, White FM. MARQUIS: a multiplex method for absolute quantification of peptides and posttranslational modifications. Nature Communications. 6: 5924. PMID 25581283 DOI: 10.1038/ncomms6924  1
2015 Bryson BD, White FM. Quantitative profiling of lysine acetylation reveals dynamic crosstalk between receptor tyrosine kinases and lysine acetylation Plos One. 10. DOI: 10.1371/journal.pone.0126242  1
2015 Sarma K, Cifuentes-Rojas C, Ergun A, Del Rosario A, Jeon Y, White F, Sadreyev R, Lee JT. ATRX directs binding of PRC2 to Xist RNA and polycomb targets Cell. 160: 568-569. DOI: 10.1016/j.cell.2015.01.030  1
2014 Sarma K, Cifuentes-Rojas C, Ergun A, Del Rosario A, Jeon Y, White F, Sadreyev R, Lee JT. ATRX directs binding of PRC2 to Xist RNA and Polycomb targets. Cell. 159: 869-83. PMID 25417162 DOI: 10.1016/j.cell.2014.10.019  1
2014 Bell EL, Nagamori I, Williams EO, Del Rosario AM, Bryson BD, Watson N, White FM, Sassone-Corsi P, Guarente L. SirT1 is required in the male germ cell for differentiation and fecundity in mice. Development (Cambridge, England). 141: 3495-504. PMID 25142464 DOI: 10.1242/dev.110627  1
2014 Haley J, White FM. Adaptive protein and phosphoprotein networks which promote therapeutic sensitivity or acquired resistance. Biochemical Society Transactions. 42: 758-64. PMID 25109954 DOI: 10.1042/BST20140038  1
2014 Zhang B, Wang J, Wang X, Zhu J, Liu Q, Shi Z, Chambers MC, Zimmerman LJ, Shaddox KF, Kim S, Davies SR, Wang S, Wang P, Kinsinger CR, Rivers RC, et al. Proteogenomic characterization of human colon and rectal cancer. Nature. 513: 382-7. PMID 25043054 DOI: 10.1038/nature13438  1
2014 Johnson H, White FM. Quantitative analysis of signaling networks across differentially embedded tumors highlights interpatient heterogeneity in human glioblastoma. Journal of Proteome Research. 13: 4581-93. PMID 24927040 DOI: 10.1021/pr500418w  1
2014 Mertins P, Yang F, Liu T, Mani DR, Petyuk VA, Gillette MA, Clauser KR, Qiao JW, Gritsenko MA, Moore RJ, Levine DA, Townsend R, Erdmann-Gilmore P, Snider JE, Davies SR, ... ... White F, et al. Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels. Molecular & Cellular Proteomics : McP. 13: 1690-704. PMID 24719451 DOI: 10.1074/mcp.M113.036392  1
2014 Gajadhar AS, White FM. System level dynamics of post-translational modifications. Current Opinion in Biotechnology. 28: 83-7. PMID 24441143 DOI: 10.1016/j.copbio.2013.12.009  0.36
2014 Arneja A, Johnson H, Gabrovsek L, Lauffenburger DA, White FM. Qualitatively different T cell phenotypic responses to IL-2 versus IL-15 are unified by identical dependences on receptor signal strength and duration. Journal of Immunology (Baltimore, Md. : 1950). 192: 123-35. PMID 24298013 DOI: 10.4049/jimmunol.1302291  1
2013 Berchowitz LE, Gajadhar AS, van Werven FJ, De Rosa AA, Samoylova ML, Brar GA, Xu Y, Xiao C, Futcher B, Weissman JS, White FM, Amon A. A developmentally regulated translational control pathway establishes the meiotic chromosome segregation pattern. Genes & Development. 27: 2147-63. PMID 24115771 DOI: 10.1101/gad.224253.113  1
2013 Hang TC, Tedford NC, Reddy RJ, Rimchala T, Wells A, White FM, Kamm RD, Lauffenburger DA. Vascular endothelial growth factor (VEGF) and platelet (PF-4) factor 4 inputs modulate human microvascular endothelial signaling in a three-dimensional matrix migration context. Molecular & Cellular Proteomics : McP. 12: 3704-18. PMID 24023389 DOI: 10.1074/mcp.M113.030528  1
2013 Floyd SR, Pacold ME, Huang Q, Clarke SM, Lam FC, Cannell IG, Bryson BD, Rameseder J, Lee MJ, Blake EJ, Fydrych A, Ho R, Greenberger BA, Chen GC, Maffa A, ... ... White FM, et al. The bromodomain protein Brd4 insulates chromatin from DNA damage signalling. Nature. 498: 246-50. PMID 23728299 DOI: 10.1038/nature12147  0.36
2013 Miraldi ER, Sharfi H, Friedline RH, Johnson H, Zhang T, Lau KS, Ko HJ, Curran TG, Haigis KM, Yaffe MB, Bonneau R, Lauffenburger DA, Kahn BB, Kim JK, Neel BG, ... ... White FM, et al. Molecular network analysis of phosphotyrosine and lipid metabolism in hepatic PTP1b deletion mice. Integrative Biology : Quantitative Biosciences From Nano to Macro. 5: 940-63. PMID 23685806 DOI: 10.1039/c3ib40013a  1
2013 Curran TG, Bryson BD, Reigelhaupt M, Johnson H, White FM. Computer aided manual validation of mass spectrometry-based proteomic data. Methods (San Diego, Calif.). 61: 219-26. PMID 23500044 DOI: 10.1016/j.ymeth.2013.03.004  1
2013 Johnson H, Lescarbeau RS, Gutierrez JA, White FM. Phosphotyrosine profiling of NSCLC cells in response to EGF and HGF reveals network specific mediators of invasion. Journal of Proteome Research. 12: 1856-67. PMID 23438512 DOI: 10.1021/pr301192t  1
2012 Johnson H, Del Rosario AM, Bryson BD, Schroeder MA, Sarkaria JN, White FM. Molecular characterization of EGFR and EGFRvIII signaling networks in human glioblastoma tumor xenografts. Molecular & Cellular Proteomics : McP. 11: 1724-40. PMID 22964225 DOI: 10.1074/mcp.M112.019984  1
2012 Naegle KM, White FM, Lauffenburger DA, Yaffe MB. Robust co-regulation of tyrosine phosphorylation sites on proteins reveals novel protein interactions. Molecular Biosystems. 8: 2771-82. PMID 22851037 DOI: 10.1039/c2mb25200g  1
2012 Bryson BD, White FM. Signaling for death: tyrosine phosphorylation in the response to glucose deprivation. Molecular Systems Biology. 8: 591. PMID 22735337 DOI: 10.1038/msb.2012.27  1
2012 Johnson H, White FM. Toward quantitative phosphotyrosine profiling in vivo. Seminars in Cell & Developmental Biology. 23: 854-62. PMID 22677333 DOI: 10.1016/j.semcdb.2012.05.008  1
2012 Carlson SM, White FM. Labeling and identification of direct kinase substrates. Science Signaling. 5: pl3. PMID 22669844 DOI: 10.1126/scisignal.2002568  1
2012 Carlson SM, White FM. Expanding applications of chemical genetics in signal transduction. Cell Cycle (Georgetown, Tex.). 11: 1903-9. PMID 22544320 DOI: 10.4161/cc.19956  1
2012 Hackel BJ, Neil JR, White FM, Wittrup KD. Epidermal growth factor receptor downregulation by small heterodimeric binding proteins. Protein Engineering, Design & Selection : Peds. 25: 47-57. PMID 22160867 DOI: 10.1093/protein/gzr056  1
2012 Jun HJ, Acquaviva J, Chi D, Lessard J, Zhu H, Woolfenden S, Bronson RT, Pfannl R, White F, Housman DE, Iyer L, Whittaker CA, Boskovitz A, Raval A, Charest A. Acquired MET expression confers resistance to EGFR inhibition in a mouse model of glioblastoma multiforme. Oncogene. 31: 3039-50. PMID 22020333 DOI: 10.1038/onc.2011.474  1
2011 Hagen DR, Apgar JF, Witmer DK, White FM, Tidor B. Reply to Comment on "Sloppy models, parameter uncertainty, and the role of experimental design" Molecular Biosystems. 7: 2523-2524. PMID 23148131 DOI: 10.1039/C1MB05200D  1
2011 Carlson SM, Chouinard CR, Labadorf A, Lam CJ, Schmelzle K, Fraenkel E, White FM. Large-scale discovery of ERK2 substrates identifies ERK-mediated transcriptional regulation by ETV3. Science Signaling. 4: rs11. PMID 22028470 DOI: 10.1126/scisignal.2002010  1
2011 Naegle KM, Welsch RE, Yaffe MB, White FM, Lauffenburger DA. MCAM: multiple clustering analysis methodology for deriving hypotheses and insights from high-throughput proteomic datasets. Plos Computational Biology. 7: e1002119. PMID 21799663 DOI: 10.1371/journal.pcbi.1002119  1
2011 White FM. The potential cost of high-throughput proteomics. Science Signaling. 4: pe8. PMID 21325204 DOI: 10.1126/scisignal.2001813  1
2011 Liu H, Ong SE, Badu-Nkansah K, Schindler J, White FM, Hynes RO. CUB-domain-containing protein 1 (CDCP1) activates Src to promote melanoma metastasis. Proceedings of the National Academy of Sciences of the United States of America. 108: 1379-84. PMID 21220330 DOI: 10.1073/pnas.1017228108  1
2011 Carlson SM, White FM. Using small molecules and chemical genetics to interrogate signaling networks. Acs Chemical Biology. 6: 75-85. PMID 21077690 DOI: 10.1021/cb1002834  1
2010 Lahesmaa-Korpinen AM, Carlson SM, White FM, Hautaniemi S. Integrated data management and validation platform for phosphorylated tandem mass spectrometry data. Proteomics. 10: 3515-24. PMID 20827731 DOI: 10.1002/pmic.200900727  1
2010 Pines G, Huang PH, Zwang Y, White FM, Yarden Y. EGFRvIV: a previously uncharacterized oncogenic mutant reveals a kinase autoinhibitory mechanism. Oncogene. 29: 5850-60. PMID 20676128 DOI: 10.1038/onc.2010.313  1
2010 Naegle KM, Gymrek M, Joughin BA, Wagner JP, Welsch RE, Yaffe MB, Lauffenburger DA, White FM. PTMScout, a Web resource for analysis of high throughput post-translational proteomics studies. Molecular & Cellular Proteomics : McP. 9: 2558-70. PMID 20631208 DOI: 10.1074/mcp.M110.001206  1
2010 Spangler JB, Neil JR, Abramovitch S, Yarden Y, White FM, Lauffenburger DA, Wittrup KD. Combination antibody treatment down-regulates epidermal growth factor receptor by inhibiting endosomal recycling. Proceedings of the National Academy of Sciences of the United States of America. 107: 13252-7. PMID 20616078 DOI: 10.1073/pnas.0913476107  1
2010 Apgar JF, Witmer DK, White FM, Tidor B. Sloppy models, parameter uncertainty, and the role of experimental design. Molecular Biosystems. 6: 1890-900. PMID 20556289 DOI: 10.1039/b918098b  1
2010 Huang PH, Miraldi ER, Xu AM, Kundukulam VA, Del Rosario AM, Flynn RA, Cavenee WK, Furnari FB, White FM. Phosphotyrosine signaling analysis of site-specific mutations on EGFRvIII identifies determinants governing glioblastoma cell growth. Molecular Biosystems. 6: 1227-37. PMID 20461251 DOI: 10.1039/c001196g  1
2010 Iwai LK, Benoist C, Mathis D, White FM. Quantitative phosphoproteomic analysis of T cell receptor signaling in diabetes prone and resistant mice. Journal of Proteome Research. 9: 3135-45. PMID 20438120 DOI: 10.1021/pr100035b  1
2010 Del Rosario AM, White FM. Quantifying oncogenic phosphotyrosine signaling networks through systems biology. Current Opinion in Genetics & Development. 20: 23-30. PMID 20074929 DOI: 10.1016/j.gde.2009.12.005  1
2009 Huang PH, Xu AM, White FM. Oncogenic EGFR signaling networks in glioma. Science Signaling. 2: re6. PMID 19738203 DOI: 10.1126/scisignal.287re6  1
2009 Morel C, Carlson SM, White FM, Davis RJ. Mcl-1 integrates the opposing actions of signaling pathways that mediate survival and apoptosis. Molecular and Cellular Biology. 29: 3845-52. PMID 19433446 DOI: 10.1128/MCB.00279-09  1
2009 Nichols AM, White FM. Manual validation of peptide sequence and sites of tyrosine phosphorylation from MS/MS spectra. Methods in Molecular Biology (Clifton, N.J.). 492: 143-60. PMID 19241031 DOI: 10.1007/978-1-59745-493-3_8  1
2009 Stevens AL, Wishnok JS, White FM, Grodzinsky AJ, Tannenbaum SR. Mechanical injury and cytokines cause loss of cartilage integrity and upregulate proteins associated with catabolism, immunity, inflammation, and repair. Molecular & Cellular Proteomics : McP. 8: 1475-89. PMID 19196708 DOI: 10.1074/mcp.M800181-MCP200  1
2009 Joughin BA, Naegle KM, Huang PH, Yaffe MB, Lauffenburger DA, White FM. An integrated comparative phosphoproteomic and bioinformatic approach reveals a novel class of MPM-2 motifs upregulated in EGFRvIII-expressing glioblastoma cells. Molecular Biosystems. 5: 59-67. PMID 19081932 DOI: 10.1039/b815075c  1
2008 Huang PH, White FM. Phosphoproteomics: unraveling the signaling web. Molecular Cell. 31: 777-81. PMID 18922462 DOI: 10.1016/j.molcel.2008.09.001  1
2008 Nita-Lazar A, Saito-Benz H, White FM. Quantitative phosphoproteomics by mass spectrometry: past, present, and future. Proteomics. 8: 4433-43. PMID 18846511 DOI: 10.1002/pmic.200800231  1
2008 Tedford NC, White FM, Radding JA. Illuminating signaling network functional biology through quantitative phosphoproteomic mass spectrometry. Briefings in Functional Genomics & Proteomics. 7: 383-94. PMID 18836207 DOI: 10.1093/bfgp/eln037  1
2008 White FM. Quantitative phosphoproteomic analysis of signaling network dynamics. Current Opinion in Biotechnology. 19: 404-9. PMID 18619541 DOI: 10.1016/j.copbio.2008.06.006  1
2008 Apgar JF, Toettcher JE, Endy D, White FM, Tidor B. Stimulus design for model selection and validation in cell signaling. Plos Computational Biology. 4: e30. PMID 18282085 DOI: 10.1371/journal.pcbi.0040030  1
2007 Huang PH, Cavenee WK, Furnari FB, White FM. Uncovering therapeutic targets for glioblastoma: a systems biology approach. Cell Cycle (Georgetown, Tex.). 6: 2750-4. PMID 17986864  1
2007 White FM. On the iTRAQ of kinase inhibitors. Nature Biotechnology. 25: 994-6. PMID 17846628 DOI: 10.1038/nbt0907-994  1
2007 Huang PH, Mukasa A, Bonavia R, Flynn RA, Brewer ZE, Cavenee WK, Furnari FB, White FM. Quantitative analysis of EGFRvIII cellular signaling networks reveals a combinatorial therapeutic strategy for glioblastoma. Proceedings of the National Academy of Sciences of the United States of America. 104: 12867-72. PMID 17646646 DOI: 10.1073/pnas.0705158104  1
2007 Zhang Y, Wolf-Yadlin A, White FM. Quantitative proteomic analysis of phosphotyrosine-mediated cellular signaling networks. Methods in Molecular Biology (Clifton, N.J.). 359: 203-12. PMID 17484120 DOI: 10.1007/978-1-59745-255-7_14  1
2007 Wolf-Yadlin A, Hautaniemi S, Lauffenburger DA, White FM. Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks. Proceedings of the National Academy of Sciences of the United States of America. 104: 5860-5. PMID 17389395 DOI: 10.1073/pnas.0608638104  1
2007 Wilker EW, van Vugt MA, Artim SA, Huang PH, Petersen CP, Reinhardt HC, Feng Y, Sharp PA, Sonenberg N, White FM, Yaffe MB. 14-3-3sigma controls mitotic translation to facilitate cytokinesis. Nature. 446: 329-32. PMID 17361185 DOI: 10.1038/nature05584  1
2007 Yaffe MB, White FM. Signaling netwErks get the global treatment. Genome Biology. 8: 202. PMID 17274840 DOI: 10.1186/gb-2007-8-1-202  1
2007 Kumar N, Wolf-Yadlin A, White FM, Lauffenburger DA. Modeling HER2 effects on cell behavior from mass spectrometry phosphotyrosine data. Plos Computational Biology. 3: e4. PMID 17206861 DOI: 10.1371/journal.pcbi.0030004  1
2006 White FM. Cell system perturbation for time-resolved quantification of tyrosine phosphorylation in complex samples. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 1: 51-2. PMID 17946778 DOI: 10.1109/IEMBS.2006.259657  1
2006 Tannenbaum SR, White FM. Regulation and specificity of S-nitrosylation and denitrosylation. Acs Chemical Biology. 1: 615-8. PMID 17168564 DOI: 10.1021/cb600439h  1
2006 Albeck JG, MacBeath G, White FM, Sorger PK, Lauffenburger DA, Gaudet S. Collecting and organizing systematic sets of protein data. Nature Reviews. Molecular Cell Biology. 7: 803-12. PMID 17057751 DOI: 10.1038/nrm2042  1
2006 Wolf-Yadlin A, Kumar N, Zhang Y, Hautaniemi S, Zaman M, Kim HD, Grantcharova V, Lauffenburger DA, White FM. Effects of HER2 overexpression on cell signaling networks governing proliferation and migration. Molecular Systems Biology. 2: 54. PMID 17016520 DOI: 10.1038/msb4100094  1
2006 Schmelzle K, Kane S, Gridley S, Lienhard GE, White FM. Temporal dynamics of tyrosine phosphorylation in insulin signaling. Diabetes. 55: 2171-9. PMID 16873679 DOI: 10.2337/db06-0148  1
2006 Schmelzle K, White FM. Phosphoproteomic approaches to elucidate cellular signaling networks. Current Opinion in Biotechnology. 17: 406-14. PMID 16806894 DOI: 10.1016/j.copbio.2006.06.004  1
2006 Brar GA, Kiburz BM, Zhang Y, Kim JE, White F, Amon A. Rec8 phosphorylation and recombination promote the step-wise loss of cohesins in meiosis. Nature. 441: 532-6. PMID 16672979 DOI: 10.1038/nature04794  1
2006 Kim JE, White FM. Quantitative analysis of phosphotyrosine signaling networks triggered by CD3 and CD28 costimulation in Jurkat cells. Journal of Immunology (Baltimore, Md. : 1950). 176: 2833-43. PMID 16493040  1
2006 Moser K, White FM. Phosphoproteomic analysis of rat liver by high capacity IMAC and LC-MS/MS. Journal of Proteome Research. 5: 98-104. PMID 16396499 DOI: 10.1021/pr0503073  1
2005 Behr JR, Matsumoto Y, White FM, Sasisekharan R. Quantification of isomers from a mixture of twelve heparin and heparan sulfate disaccharides using tandem mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 19: 2553-62. PMID 16124039 DOI: 10.1002/rcm.2079  1
2005 Kim JE, Tannenbaum SR, White FM. Global phosphoproteome of HT-29 human colon adenocarcinoma cells. Journal of Proteome Research. 4: 1339-46. PMID 16083285 DOI: 10.1021/pr050048h  1
2005 Zhang Y, Wolf-Yadlin A, Ross PL, Pappin DJ, Rush J, Lauffenburger DA, White FM. Time-resolved mass spectrometry of tyrosine phosphorylation sites in the epidermal growth factor receptor signaling network reveals dynamic modules. Molecular & Cellular Proteomics : McP. 4: 1240-50. PMID 15951569 DOI: 10.1074/mcp.M500089-MCP200  1
2005 Kumar N, Wolf-Yadlin A, White F, Lauffenburger D. Systematic analysis of erbb induced signaling, proliferation, and migration Aiche Annual Meeting, Conference Proceedings. 9199.  1
2004 Chen WG, White FM. Proteomic analysis of cellular signaling. Expert Review of Proteomics. 1: 343-54. PMID 15966830 DOI: 10.1586/14789450.1.3.343  1
2003 Zarling AL, Luckey CJ, Marto JA, White FM, Brame CJ, Evans AM, Lehner PJ, Cresswell P, Shabanowitz J, Hunt DF, Engelhard VH. Tapasin is a facilitator, not an editor, of class I MHC peptide binding. Journal of Immunology (Baltimore, Md. : 1950). 171: 5287-95. PMID 14607930  1
2003 Saibil SD, Ohteki T, White FM, Luscher M, Zakarian A, Elford A, Shabanowitz J, Nishina H, Hugo P, Penninger J, Barber B, Hunt DF, Ohashi PS. Weak agonist self-peptides promote selection and tuning of virus-specific T cells. European Journal of Immunology. 33: 685-96. PMID 12616489 DOI: 10.1002/eji.200323143  1
2003 Ficarro S, Chertihin O, Westbrook VA, White F, Jayes F, Kalab P, Marto JA, Shabanowitz J, Herr JC, Hunt DF, Visconti PE. Phosphoproteome analysis of capacitated human sperm. Evidence of tyrosine phosphorylation of a kinase-anchoring protein 3 and valosin-containing protein/p97 during capacitation. The Journal of Biological Chemistry. 278: 11579-89. PMID 12509440 DOI: 10.1074/jbc.M202325200  1
2002 Lippolis JD, White FM, Marto JA, Luckey CJ, Bullock TN, Shabanowitz J, Hunt DF, Engelhard VH. Analysis of MHC class II antigen processing by quantitation of peptides that constitute nested sets. Journal of Immunology (Baltimore, Md. : 1950). 169: 5089-97. PMID 12391225  1
2002 Gioeli D, Ficarro SB, Kwiek JJ, Aaronson D, Hancock M, Catling AD, White FM, Christian RE, Settlage RE, Shabanowitz J, Hunt DF, Weber MJ. Androgen receptor phosphorylation. Regulation and identification of the phosphorylation sites. The Journal of Biological Chemistry. 277: 29304-14. PMID 12015328 DOI: 10.1074/jbc.M204131200  1
2002 Flyer DC, Ramakrishna V, Miller C, Myers H, McDaniel M, Root K, Flournoy C, Engelhard VH, Canaday DH, Marto JA, Ross MM, Hunt DF, Shabanowitz J, White FM. Identification by mass spectrometry of CD8(+)-T-cell Mycobacterium tuberculosis epitopes within the Rv0341 gene product. Infection and Immunity. 70: 2926-32. PMID 12010981 DOI: 10.1128/IAI.70.6.2926-2932.2002  1
2002 Ficarro SB, McCleland ML, Stukenberg PT, Burke DJ, Ross MM, Shabanowitz J, Hunt DF, White FM. Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae. Nature Biotechnology. 20: 301-5. PMID 11875433 DOI: 10.1038/nbt0302-301  1
2002 Caldwell JA, Orsi C, Root KE, Dharsee M, Wang Z, Stewart II, White FM, Brame CJ, Guha A, Micaleff J, Ornatsky O, Marto JA. Comprehensive comparative proteome analysis Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 57-58.  1
2002 Larsen B, White F, Chen J, Ornatsky O, Marto J, Caldwell J, Orsi C, Dahzee M, Wang Z, Figeys D. Phosphorylation analysis (phosmap) of complex protein mixtures Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 165-166.  1
2001 Luckey CJ, Marto JA, Partridge M, Hall E, White FM, Lippolis JD, Shabanowitz J, Hunt DF, Engelhard VH. Differences in the expression of human class I MHC alleles and their associated peptides in the presence of proteasome inhibitors. Journal of Immunology (Baltimore, Md. : 1950). 167: 1212-21. PMID 11466336  1
2001 Nepom GT, Lippolis JD, White FM, Masewicz S, Marto JA, Herman A, Luckey CJ, Falk B, Shabanowitz J, Hunt DF, Engelhard VH, Nepom BS. Identification and modulation of a naturally processed T cell epitope from the diabetes-associated autoantigen human glutamic acid decarboxylase 65 (hGAD65). Proceedings of the National Academy of Sciences of the United States of America. 98: 1763-8. PMID 11172025 DOI: 10.1073/pnas.98.4.1763  1
2000 Zarling AL, Ficarro SB, White FM, Shabanowitz J, Hunt DF, Engelhard VH. Phosphorylated peptides are naturally processed and presented by major histocompatibility complex class I molecules in vivo. The Journal of Experimental Medicine. 192: 1755-62. PMID 11120772 DOI: 10.1084/jem.192.12.1755  1
2000 Gimenez-Bonafé P, Laszczak M, Kasinsky HE, Lemke MJ, Lewis JD, Iskandar M, He T, Ikonomou MG, White FM, Hunt DF, Chiva M, Ausió J. Characterization and evolutionary relevance of the sperm nuclear basic proteins from stickleback fish. Molecular Reproduction and Development. 57: 185-93. PMID 10984419 DOI: 10.1002/1098-2795(200010)57:2<185::AID-MRD10>3.0.CO;2-5  1
2000 Crotzer VL, Christian RE, Brooks JM, Shabanowitz J, Settlage RE, Marto JA, White FM, Rickinson AB, Hunt DF, Engelhard VH. Immunodominance among EBV-derived epitopes restricted by HLA-B27 does not correlate with epitope abundance in EBV-transformed B-lymphoblastoid cell lines. Journal of Immunology (Baltimore, Md. : 1950). 164: 6120-9. PMID 10843661  1
2000 Huberman A, Aguilar MB, Navarro-Quiroga I, Ramos L, Fernández I, White FM, Hunt DF, Shabanowitz J. A hyperglycemic peptide hormone from the Caribbean shrimp Penaeus (litopenaeus) schmitti. Peptides. 21: 331-8. PMID 10793213 DOI: 10.1016/S0196-9781(00)00155-8  1
1999 Pierce RA, Field ED, den Haan JM, Caldwell JA, White FM, Marto JA, Wang W, Frost LM, Blokland E, Reinhardus C, Shabanowitz J, Hunt DF, Goulmy E, Engelhard VH. Cutting edge: the HLA-A*0101-restricted HY minor histocompatibility antigen originates from DFFRY and contains a cysteinylated cysteine residue as identified by a novel mass spectrometric technique. Journal of Immunology (Baltimore, Md. : 1950). 163: 6360-4. PMID 10586024  1
1999 Jackson GS, White FM, Guan S, Marshall AG. Matrix-shimmed ion cyclotron resonance ion trap simultaneously optimized for excitation, detection, quadrupolar axialization, and trapping Journal of the American Society For Mass Spectrometry. 10: 759-769. DOI: 10.1016/S1044-0305(99)00048-3  1
1998 Emmett MR, White FM, Hendrickson CL, Shi SD, Marshall AG. Application of micro-electrospray liquid chromatography techniques to FT-ICR MS to enable high-sensitivity biological analysis. Journal of the American Society For Mass Spectrometry. 9: 333-40. PMID 9879363 DOI: 10.1016/S1044-0305(97)00287-0  1
1998 Rodgers RP, White FM, Hendrickson CL, Marshall AG, Andersen KV. Resolution, elemental composition, and simultaneous monitoring by fourier transform ion cyclotron resonance mass spectrometry of organosulfur species before and after diesel fuel processing Analytical Chemistry. 70: 4743-4750. DOI: 10.1021/ac980487i  1
1998 Rodgers RP, White FM, McIntosh DG, Marshall AG. 5.6 tesla Fourier transform ion cyclotron resonance mass spectrometer for analysis of volatile complex mixtures Review of Scientific Instruments. 69: 2278-2284.  1
1998 Rodgers RP, White FM, Hendrickson CL, Marshall AG, Andersen KV. FT-ICR mass spectral analysis of processed and unprocessed diesel fuels: An evaluation of the hydrotreating process Acs Division of Petroleum Chemistry, Inc. Preprints. 43: 516-519.  1
1997 Milgram KE, White FM, Goodner KL, Watson CH, Koppenaal DW, Barinaga CJ, Smith BH, Winefordner JD, Marshall AG, Houk RS, Eyler JR. High-Resolution Inductively Coupled Plasma Fourier Transform Ion Cyclotron Resonance Mass Spectrometry Analytical Chemistry. 69: 3714-3721.  1
1996 White FM, Marto JA, Marshall AG. An external source 7 T Fourier transform ion cyclotron resonance mass spectrometer with electrostatic ion guide. Rapid Communications in Mass Spectrometry : Rcm. 10: 1845-9. PMID 8953787 DOI: 10.1002/(SICI)1097-0231(199611)10:14<1845::AID-RCM749>3.0.CO;2-#  1
1996 Senko MW, Hendrickson CL, Pasa-Tolić L, Marto JA, White FM, Guan S, Marshall AG. Electrospray ionization Fourier transform ion cyclotron resonance at 9.4 T. Rapid Communications in Mass Spectrometry : Rcm. 10: 1824-8. PMID 8953784 DOI: 10.1002/(SICI)1097-0231(199611)10:14<1824::AID-RCM695>3.0.CO;2-E  1
1995 Solouki T, Marto JA, White FM, Guan S, Marshall AG. Attomole biomolecule mass analysis by matrix-assisted laser desorption/ionization Fourier transform ion cyclotron resonance. Analytical Chemistry. 67: 4139-44. PMID 8633766  1
1995 Marto JA, White FM, Seldomridge S, Marshall AG. Structural characterization of phospholipids by matrix-assisted laser desorption/ionization Fourier transform ion cyclotron resonance mass spectrometry. Analytical Chemistry. 67: 3979-84. PMID 8633761  1
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