Dinesh A Barawkar - Related publications
Affiliations: | CSIR-National Chemical Laboratory, Pune, India |
Area:
Bio-organic chemistry
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50 most relevant papers in past 60 days:
50 most relevant papers in past 60 days:
Year | Citation | Score | |
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2021 | Yusof R, Jumbri K, Ahmad H, Abdulmalek E, Abdul Rahman MB. Binding of tetrabutylammonium bromide based deep eutectic solvent to DNA by spectroscopic analysis. Spectrochimica Acta. Part a, Molecular and Biomolecular Spectroscopy. 253: 119543. PMID 33636491 DOI: 10.1016/j.saa.2021.119543 | ||
2021 | Cheng M, Qiu D, Tamon L, Ištvánková E, Víšková P, Amrane S, Guédin A, Chen J, Lacroix L, Ju H, Trantírek L, Sahakyan AB, Zhou J, Mergny JL. Thermal and pH stabilities of i-DNA: confronting in vitro experiments with models and in-cell NMR data. Angewandte Chemie (International Ed. in English). PMID 33605024 DOI: 10.1002/anie.202016801 | ||
2021 | Mahalakshmi G, Selvakumar B, Vennila KN, Rao PL, Madhuri S, Seenivasaperumal M, Elango KP. Spectroscopic Studies on the Interaction of Naphthyridines with DNA and Fluorescent Detection of DNA in Agarose Gel. Journal of Fluorescence. PMID 33389419 DOI: 10.1007/s10895-020-02658-0 | ||
2021 | Medan J, Sleebs BE, Lackovic K, Watson KG, Evison BJ, Phillips DR, Cutts SM. Development of an automated assay for accelerated in vitro detection of DNA adduct-inducing and crosslinking agents. Bioorganic & Medicinal Chemistry Letters. 127813. PMID 33486050 DOI: 10.1016/j.bmcl.2021.127813 | ||
2021 | Chen JY, Yang LY, Liu ZJ, Wei QX, Zhang Y, Wu B, Zhong GX, Fu LX, Lin XH, Weng XH, Xu XW. DNA Nanosieve-Based Regenerative Electrochemical Biosensor Utilizing Nucleic Acid Flexibility for Accurate Allele Typing in Clinical Samples. Acs Sensors. PMID 33657808 DOI: 10.1021/acssensors.0c02720 | ||
2021 | Wagner JR, Madugundu GS, Cadet J. Ozone-Induced DNA Damage: A Pandora's Box of Oxidatively Modified DNA Bases. Chemical Research in Toxicology. PMID 33417438 DOI: 10.1021/acs.chemrestox.0c00342 | ||
2021 | Wagner JR, Madugundu GS, Cadet J. Ozone-Induced DNA Damage: A Pandora's Box of Oxidatively Modified DNA Bases. Chemical Research in Toxicology. PMID 33417438 DOI: 10.1021/acs.chemrestox.0c00342 | ||
2021 | Shi K, Moeller NH, Banerjee S, McCann JL, Carpenter MA, Yin L, Moorthy R, Orellana K, Harki DA, Harris RS, Aihara H. Structural basis for recognition of distinct deaminated DNA lesions by endonuclease Q. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33658373 DOI: 10.1073/pnas.2021120118 | ||
2021 | Bortolozzi R, Ihmels H, Schulte R, Stremmel C, Viola G. Synthesis, DNA-binding and antiproliferative properties of diarylquinolizinium derivatives. Organic & Biomolecular Chemistry. PMID 33410854 DOI: 10.1039/d0ob02298e | ||
2021 | Tomar R, Minko IG, Kellum AH, Voehler MW, Stone MP, McCullough AK, Lloyd RS. DNA Sequence Modulates the Efficiency of NEIL1-Catalyzed Excision of the Aflatoxin B-Induced Formamidopyrimidine Guanine Adduct. Chemical Research in Toxicology. PMID 33595290 DOI: 10.1021/acs.chemrestox.0c00517 | ||
2021 | Wang R, Li J, Niu DB, Xu FY, Zeng XA. Protective effect of baicalein on DNA oxidative damage and its binding mechanism with DNA: An in vitro and molecular docking study. Spectrochimica Acta. Part a, Molecular and Biomolecular Spectroscopy. 253: 119605. PMID 33667888 DOI: 10.1016/j.saa.2021.119605 | ||
2021 | Vatta M, Lyons B, Heney KA, Lidster T, Merrill AR. Mapping the DNA-Binding Motif of Scabin Toxin, a Guanine Modifying Enzyme from . Toxins. 13. PMID 33450958 DOI: 10.3390/toxins13010055 | ||
2021 | Zhu S, Yang Y, Li M, Yang Y, Li C, Yin Y. A pH-responsive bioassay for sensitive colorimetric detection of adenosine triphosphate based on switchable DNA aptamer and metal ion-urease interactions. Analytical and Bioanalytical Chemistry. PMID 33462658 DOI: 10.1007/s00216-020-03136-z | ||
2021 | Fan Z, Yao B, Ding Y, Xie M, Zhao J, Zhang K, Huang W. Electrochemiluminescence aptasensor for Siglec-5 detection based on MoS@Au nanocomposites emitter and exonuclease III-powered DNA walker. Sensors and Actuators. B, Chemical. 129592. PMID 33584010 DOI: 10.1016/j.snb.2021.129592 | ||
2021 | Zheng H, Botos I, Clausse V, Nikolayevskiy H, Rastede EE, Fouz MF, Mazur SJ, Appella DH. Conformational constraints of cyclopentane peptide nucleic acids facilitate tunable binding to DNA. Nucleic Acids Research. PMID 33406227 DOI: 10.1093/nar/gkaa1249 | ||
2021 | Anderson AJ, Grey E, Bongiardina NJ, Bowman CN, Bryant SJ. Synthesis and Characterization of Click Nucleic Acid Conjugated Polymeric Microparticles for DNA Delivery Applications. Biomacromolecules. PMID 33621070 DOI: 10.1021/acs.biomac.0c01563 | ||
2021 | Laskar P, Somani S, Mullin M, Tate RJ, Warzecha M, Bowering D, Keating P, Irving C, Leung HY, Dufès C. Octadecyl chain-bearing PEGylated poly(propyleneimine)-based dendrimersomes: physicochemical studies, redox-responsiveness, DNA condensation, cytotoxicity and gene delivery to cancer cells. Biomaterials Science. PMID 33404026 DOI: 10.1039/d0bm01441a | ||
2021 | Bao HL, Xu Y. Observation of Z-DNA Structure via the Synthesis of Oligonucleotide DNA Containing 8-Trifluoromethyl-2-Deoxyguanosine. Current Protocols. 1: e28. PMID 33484490 DOI: 10.1002/cpz1.28 | ||
2021 | Topham CM, Smith JC. Peptide nucleic acid Hoogsteen strand linker design for major groove recognition of DNA thymine bases. Journal of Computer-Aided Molecular Design. PMID 33624202 DOI: 10.1007/s10822-021-00375-9 | ||
2021 | Peng X, Fan H, Sun H, Zhang Q. Photoinduced DNA Interstrand Cross-linking by 1,1'-Biphenyl Analogues: Substituents and Leaving Groups Combine to Determine the Efficiency of Cross-Linker. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 33440025 DOI: 10.1002/chem.202005064 | ||
2021 | Kumar S, Kumar P, Nair MS. Exploring the binding of resveratrol to a promoter DNA sequence d(CCAATTGG) through multispectroscopic, nuclear magnetic resonance and molecular dynamics studies. Spectrochimica Acta. Part a, Molecular and Biomolecular Spectroscopy. 252: 119488. PMID 33545510 DOI: 10.1016/j.saa.2021.119488 | ||
2021 | Weinhold E, Chakraborty B. DNA modification and visualization on an origami-based enzyme nano-factory. Nanoscale. PMID 33471009 DOI: 10.1039/d0nr07618j | ||
2021 | Lu K, Liu C, Liu Y, Luo A, Chen J, Lei Z, Kong J, Xiao X, Zhang S, Wang YZ, Ma L, Dou SX, Wang PY, Li M, Li G, et al. Curaxin-Induced DNA Topology Alterations Trigger the Distinct Binding Response of CTCF and FACT at the Single-Molecule Level. Biochemistry. PMID 33570402 DOI: 10.1021/acs.biochem.1c00014 | ||
2021 | Maeda R, Bando T, Sugiyama H. Application of DNA-Alkylating Pyrrole-Imidazole Polyamides for Cancer Treatment. Chembiochem : a European Journal of Chemical Biology. PMID 33453075 DOI: 10.1002/cbic.202000752 | ||
2021 | Iaccarino N, Cheng M, Qiu D, Pagano B, Amato J, Di Porzio A, Zhou J, Randazzo A, Mergny JL. Effects of sequence and base composition on the CD and TDS profiles of i-DNA. Angewandte Chemie (International Ed. in English). PMID 33617090 DOI: 10.1002/anie.202016822 | ||
2021 | Aktas GB, Ribera A, Skouridou V, Masip L. DNA immobilization and detection using DNA binding proteins. Analytical and Bioanalytical Chemistry. PMID 33501551 DOI: 10.1007/s00216-021-03162-5 | ||
2021 | Cai R, Zhang S, Chen L, Li M, Zhang Y, Zhou N. Self-Assembled DNA Nanoflowers Triggered by a DNA Walker for Highly Sensitive Electrochemical Detection of . Acs Applied Materials & Interfaces. PMID 33470807 DOI: 10.1021/acsami.0c22062 | ||
2021 | Choi WL, Mok YG, Huh JH. Application of 5-Methylcytosine DNA Glycosylase to the Quantitative Analysis of DNA Methylation. International Journal of Molecular Sciences. 22. PMID 33499041 DOI: 10.3390/ijms22031072 | ||
2021 | Li F, Yu W, Zhang J, Dong Y, Ding X, Ruan X, Gu Z, Yang D. Spatiotemporally programmable cascade hybridization of hairpin DNA in polymeric nanoframework for precise siRNA delivery. Nature Communications. 12: 1138. PMID 33602916 DOI: 10.1038/s41467-021-21442-7 | ||
2021 | Rattu P, Belzunces B, Haynes T, Skylaris CK, Khalid S. Translocation of flexible and tensioned ssDNA through designed hydrophobic nanopores with two constrictions. Nanoscale. PMID 33434242 DOI: 10.1039/d0nr04890a | ||
2021 | Chandrasekaran AR. Nuclease resistance of DNA nanostructures. Nature Reviews. Chemistry. 1-15. PMID 33585701 DOI: 10.1038/s41570-021-00251-y | ||
2021 | Sarkar S, Tribedi P, Bhadra K. Structure-activity insights of harmine targeting DNA, ROS inducing cytotoxicity with PARP mediated apoptosis against cervical cancer, anti-biofilm formation and therapeutic study. Journal of Biomolecular Structure & Dynamics. 1-23. PMID 33480316 DOI: 10.1080/07391102.2021.1874533 | ||
2021 | Jeong SW, Kim MK, Zhao L, Yang SK, Jung JH, Lim HM, Lim S. Effects of Conserved Wedge Domain Residues on DNA Binding Activity of RecG Helicase. Frontiers in Genetics. 12: 634615. PMID 33613647 DOI: 10.3389/fgene.2021.634615 | ||
2021 | Hao N, Sullivan AE, Shearwin KE, Dodd IB. The loopometer: a quantitative in vivo assay for DNA-looping proteins. Nucleic Acids Research. PMID 33511418 DOI: 10.1093/nar/gkaa1284 | ||
2021 | Shin HR, See JE, Kweon J, Kim HS, Sung GJ, Park S, Jang AH, Jang G, Choi KC, Kim I, Kim JS, Kim Y. Small-molecule inhibitors of histone deacetylase improve CRISPR-based adenine base editing. Nucleic Acids Research. PMID 33544854 DOI: 10.1093/nar/gkab052 | ||
2021 | Fabbrizi MR, Hughes JR, Parsons JL. The Enzyme-Modified Neutral Comet (EMNC) Assay for Complex DNA Damage Detection. Methods and Protocols. 4. PMID 33669320 DOI: 10.3390/mps4010014 | ||
2021 | Nimbarte VD, Wirmer-Bartoschek J, Gande SL, Alshamleh I, Seibert M, Nasiri HR, Schnütgen F, Serve H, Schwalbe H. Synthesis and In vitro Evaluation of novel 5-nitroIndole Derivatives as c-Myc G-Quadruplex Binders with Anticancer Activities. Chemmedchem. PMID 33508167 DOI: 10.1002/cmdc.202000835 | ||
2021 | Cai Q, Li H, Cao W, Guifen Jie. Photoinduced-electron transfer coupled with DNA cross-chain displacement multiple amplification for fluorescence biosensing of MicroRNA. Analytica Chimica Acta. 1148: 238169. PMID 33516380 DOI: 10.1016/j.aca.2020.12.044 | ||
2021 | Ideta-Otsuka M, Miyai M, Yamamoto N, Tsuchimoto A, Tamura H, Tanemura K, Shibutani M, Igarashi K. Development of a new in vitro assay system for evaluating the effects of chemicals on DNA methylation. The Journal of Toxicological Sciences. 46: 83-90. PMID 33536392 DOI: 10.2131/jts.46.83 | ||
2021 | Xu J, Wang X, Zhang X, Yao L, Qin P, Lu Y, Chen Y, Zhang Y, Yan Y, Chen W. Periodically programmed building and collapse of DNA networks enables an ultrahigh signal amplification effect for ultrasensitive nucleic acids analysis. Analytica Chimica Acta. 1150: 338221. PMID 33583542 DOI: 10.1016/j.aca.2021.338221 | ||
2021 | Ray S, Tillo D, Durell SR, Khund-Sayeed S, Vinson C. REL Domain of NFATc2 Binding to Five Types of DNA Using Protein Binding Microarrays. Acs Omega. 6: 4147-4154. PMID 33644537 DOI: 10.1021/acsomega.0c04069 | ||
2021 | Kölmel DK, Zhu H, Flanagan ME, Sakata SK, Harris AR, Wan J, Morgan BA. Employing Photocatalysis for the Design and Preparation of DNA-encoded Libraries: A Case Study. Chemical Record (New York, N.Y.). PMID 33570227 DOI: 10.1002/tcr.202000148 | ||
2021 | Pyne ALB, Noy A, Main KHS, Velasco-Berrelleza V, Piperakis MM, Mitchenall LA, Cugliandolo FM, Beton JG, Stevenson CEM, Hoogenboom BW, Bates AD, Maxwell A, Harris SA. Base-pair resolution analysis of the effect of supercoiling on DNA flexibility and major groove recognition by triplex-forming oligonucleotides. Nature Communications. 12: 1053. PMID 33594049 DOI: 10.1038/s41467-021-21243-y | ||
2021 | Li D, Yang E, Luo Z, Xie Q, Duan Y. An enzyme-mediated universal fluorescent biosensor template for pathogen detection based on a three-dimensional DNA walker and catalyzed hairpin assembly. Nanoscale. PMID 33471006 DOI: 10.1039/d0nr07593k | ||
2021 | Liang L, Wang Z, Qu L, Huang W, Guo S, Guan X, Zhang W, Sun F, Yuan H, Zou H, Liu H, Yu Z. Single-molecule multiplexed profiling of protein-DNA complexes using Magnetic Tweezers. The Journal of Biological Chemistry. 100327. PMID 33493518 DOI: 10.1016/j.jbc.2021.100327 | ||
2021 | Tumuluri VS, Rajgor V, Xu SY, Chouhan OP, Saikrishnan K. Mechanism of DNA cleavage by the endonuclease SauUSI: a major barrier to horizontal gene transfer and antibiotic resistance in Staphylococcus aureus. Nucleic Acids Research. PMID 33533920 DOI: 10.1093/nar/gkab042 | ||
2021 | Vasquez G, Freestone GC, Wan WB, Low A, De Hoyos CL, Yu J, Prakash TP, Ǿstergaard ME, Liang XH, Crooke ST, Swayze EE, Migawa MT, Seth PP. Site-specific incorporation of 5'-methyl DNA enhances the therapeutic profile of gapmer ASOs. Nucleic Acids Research. PMID 33544849 DOI: 10.1093/nar/gkab047 | ||
2021 | McGillick J, Ames JR, Murphy T, Bourne CR. A YoeB toxin cleaves both RNA and DNA. Scientific Reports. 11: 3592. PMID 33574407 DOI: 10.1038/s41598-021-82950-6 | ||
2021 | Hao Y, Li Y, Song L, Deng Z. Flash Synthesis of Spherical Nucleic Acids with Record DNA Density. Journal of the American Chemical Society. PMID 33599474 DOI: 10.1021/jacs.1c00568 | ||
2021 | Jiang J, Du X. DNA-targeted formation and catalytic reactions of DNAzymes for label-free ratiometric electrochemiluminescence biosensing. Talanta. 225: 121964. PMID 33592718 DOI: 10.1016/j.talanta.2020.121964 |