Dinesh A Barawkar - Related publications

Affiliations: 
CSIR-National Chemical Laboratory, Pune, India 
Area:
Bio-organic chemistry
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Yusof R, Jumbri K, Ahmad H, Abdulmalek E, Abdul Rahman MB. Binding of tetrabutylammonium bromide based deep eutectic solvent to DNA by spectroscopic analysis. Spectrochimica Acta. Part a, Molecular and Biomolecular Spectroscopy. 253: 119543. PMID 33636491 DOI: 10.1016/j.saa.2021.119543   
2021 Cheng M, Qiu D, Tamon L, Ištvánková E, Víšková P, Amrane S, Guédin A, Chen J, Lacroix L, Ju H, Trantírek L, Sahakyan AB, Zhou J, Mergny JL. Thermal and pH stabilities of i-DNA: confronting in vitro experiments with models and in-cell NMR data. Angewandte Chemie (International Ed. in English). PMID 33605024 DOI: 10.1002/anie.202016801   
2021 Mahalakshmi G, Selvakumar B, Vennila KN, Rao PL, Madhuri S, Seenivasaperumal M, Elango KP. Spectroscopic Studies on the Interaction of Naphthyridines with DNA and Fluorescent Detection of DNA in Agarose Gel. Journal of Fluorescence. PMID 33389419 DOI: 10.1007/s10895-020-02658-0   
2021 Medan J, Sleebs BE, Lackovic K, Watson KG, Evison BJ, Phillips DR, Cutts SM. Development of an automated assay for accelerated in vitro detection of DNA adduct-inducing and crosslinking agents. Bioorganic & Medicinal Chemistry Letters. 127813. PMID 33486050 DOI: 10.1016/j.bmcl.2021.127813   
2021 Chen JY, Yang LY, Liu ZJ, Wei QX, Zhang Y, Wu B, Zhong GX, Fu LX, Lin XH, Weng XH, Xu XW. DNA Nanosieve-Based Regenerative Electrochemical Biosensor Utilizing Nucleic Acid Flexibility for Accurate Allele Typing in Clinical Samples. Acs Sensors. PMID 33657808 DOI: 10.1021/acssensors.0c02720   
2021 Wagner JR, Madugundu GS, Cadet J. Ozone-Induced DNA Damage: A Pandora's Box of Oxidatively Modified DNA Bases. Chemical Research in Toxicology. PMID 33417438 DOI: 10.1021/acs.chemrestox.0c00342   
2021 Wagner JR, Madugundu GS, Cadet J. Ozone-Induced DNA Damage: A Pandora's Box of Oxidatively Modified DNA Bases. Chemical Research in Toxicology. PMID 33417438 DOI: 10.1021/acs.chemrestox.0c00342   
2021 Shi K, Moeller NH, Banerjee S, McCann JL, Carpenter MA, Yin L, Moorthy R, Orellana K, Harki DA, Harris RS, Aihara H. Structural basis for recognition of distinct deaminated DNA lesions by endonuclease Q. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33658373 DOI: 10.1073/pnas.2021120118   
2021 Bortolozzi R, Ihmels H, Schulte R, Stremmel C, Viola G. Synthesis, DNA-binding and antiproliferative properties of diarylquinolizinium derivatives. Organic & Biomolecular Chemistry. PMID 33410854 DOI: 10.1039/d0ob02298e   
2021 Tomar R, Minko IG, Kellum AH, Voehler MW, Stone MP, McCullough AK, Lloyd RS. DNA Sequence Modulates the Efficiency of NEIL1-Catalyzed Excision of the Aflatoxin B-Induced Formamidopyrimidine Guanine Adduct. Chemical Research in Toxicology. PMID 33595290 DOI: 10.1021/acs.chemrestox.0c00517   
2021 Wang R, Li J, Niu DB, Xu FY, Zeng XA. Protective effect of baicalein on DNA oxidative damage and its binding mechanism with DNA: An in vitro and molecular docking study. Spectrochimica Acta. Part a, Molecular and Biomolecular Spectroscopy. 253: 119605. PMID 33667888 DOI: 10.1016/j.saa.2021.119605   
2021 Vatta M, Lyons B, Heney KA, Lidster T, Merrill AR. Mapping the DNA-Binding Motif of Scabin Toxin, a Guanine Modifying Enzyme from . Toxins. 13. PMID 33450958 DOI: 10.3390/toxins13010055   
2021 Zhu S, Yang Y, Li M, Yang Y, Li C, Yin Y. A pH-responsive bioassay for sensitive colorimetric detection of adenosine triphosphate based on switchable DNA aptamer and metal ion-urease interactions. Analytical and Bioanalytical Chemistry. PMID 33462658 DOI: 10.1007/s00216-020-03136-z   
2021 Fan Z, Yao B, Ding Y, Xie M, Zhao J, Zhang K, Huang W. Electrochemiluminescence aptasensor for Siglec-5 detection based on MoS@Au nanocomposites emitter and exonuclease III-powered DNA walker. Sensors and Actuators. B, Chemical. 129592. PMID 33584010 DOI: 10.1016/j.snb.2021.129592   
2021 Zheng H, Botos I, Clausse V, Nikolayevskiy H, Rastede EE, Fouz MF, Mazur SJ, Appella DH. Conformational constraints of cyclopentane peptide nucleic acids facilitate tunable binding to DNA. Nucleic Acids Research. PMID 33406227 DOI: 10.1093/nar/gkaa1249   
2021 Anderson AJ, Grey E, Bongiardina NJ, Bowman CN, Bryant SJ. Synthesis and Characterization of Click Nucleic Acid Conjugated Polymeric Microparticles for DNA Delivery Applications. Biomacromolecules. PMID 33621070 DOI: 10.1021/acs.biomac.0c01563   
2021 Laskar P, Somani S, Mullin M, Tate RJ, Warzecha M, Bowering D, Keating P, Irving C, Leung HY, Dufès C. Octadecyl chain-bearing PEGylated poly(propyleneimine)-based dendrimersomes: physicochemical studies, redox-responsiveness, DNA condensation, cytotoxicity and gene delivery to cancer cells. Biomaterials Science. PMID 33404026 DOI: 10.1039/d0bm01441a   
2021 Bao HL, Xu Y. Observation of Z-DNA Structure via the Synthesis of Oligonucleotide DNA Containing 8-Trifluoromethyl-2-Deoxyguanosine. Current Protocols. 1: e28. PMID 33484490 DOI: 10.1002/cpz1.28   
2021 Topham CM, Smith JC. Peptide nucleic acid Hoogsteen strand linker design for major groove recognition of DNA thymine bases. Journal of Computer-Aided Molecular Design. PMID 33624202 DOI: 10.1007/s10822-021-00375-9   
2021 Peng X, Fan H, Sun H, Zhang Q. Photoinduced DNA Interstrand Cross-linking by 1,1'-Biphenyl Analogues: Substituents and Leaving Groups Combine to Determine the Efficiency of Cross-Linker. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 33440025 DOI: 10.1002/chem.202005064   
2021 Kumar S, Kumar P, Nair MS. Exploring the binding of resveratrol to a promoter DNA sequence d(CCAATTGG) through multispectroscopic, nuclear magnetic resonance and molecular dynamics studies. Spectrochimica Acta. Part a, Molecular and Biomolecular Spectroscopy. 252: 119488. PMID 33545510 DOI: 10.1016/j.saa.2021.119488   
2021 Weinhold E, Chakraborty B. DNA modification and visualization on an origami-based enzyme nano-factory. Nanoscale. PMID 33471009 DOI: 10.1039/d0nr07618j   
2021 Lu K, Liu C, Liu Y, Luo A, Chen J, Lei Z, Kong J, Xiao X, Zhang S, Wang YZ, Ma L, Dou SX, Wang PY, Li M, Li G, et al. Curaxin-Induced DNA Topology Alterations Trigger the Distinct Binding Response of CTCF and FACT at the Single-Molecule Level. Biochemistry. PMID 33570402 DOI: 10.1021/acs.biochem.1c00014   
2021 Maeda R, Bando T, Sugiyama H. Application of DNA-Alkylating Pyrrole-Imidazole Polyamides for Cancer Treatment. Chembiochem : a European Journal of Chemical Biology. PMID 33453075 DOI: 10.1002/cbic.202000752   
2021 Iaccarino N, Cheng M, Qiu D, Pagano B, Amato J, Di Porzio A, Zhou J, Randazzo A, Mergny JL. Effects of sequence and base composition on the CD and TDS profiles of i-DNA. Angewandte Chemie (International Ed. in English). PMID 33617090 DOI: 10.1002/anie.202016822   
2021 Aktas GB, Ribera A, Skouridou V, Masip L. DNA immobilization and detection using DNA binding proteins. Analytical and Bioanalytical Chemistry. PMID 33501551 DOI: 10.1007/s00216-021-03162-5   
2021 Cai R, Zhang S, Chen L, Li M, Zhang Y, Zhou N. Self-Assembled DNA Nanoflowers Triggered by a DNA Walker for Highly Sensitive Electrochemical Detection of . Acs Applied Materials & Interfaces. PMID 33470807 DOI: 10.1021/acsami.0c22062   
2021 Choi WL, Mok YG, Huh JH. Application of 5-Methylcytosine DNA Glycosylase to the Quantitative Analysis of DNA Methylation. International Journal of Molecular Sciences. 22. PMID 33499041 DOI: 10.3390/ijms22031072   
2021 Li F, Yu W, Zhang J, Dong Y, Ding X, Ruan X, Gu Z, Yang D. Spatiotemporally programmable cascade hybridization of hairpin DNA in polymeric nanoframework for precise siRNA delivery. Nature Communications. 12: 1138. PMID 33602916 DOI: 10.1038/s41467-021-21442-7   
2021 Rattu P, Belzunces B, Haynes T, Skylaris CK, Khalid S. Translocation of flexible and tensioned ssDNA through designed hydrophobic nanopores with two constrictions. Nanoscale. PMID 33434242 DOI: 10.1039/d0nr04890a   
2021 Chandrasekaran AR. Nuclease resistance of DNA nanostructures. Nature Reviews. Chemistry. 1-15. PMID 33585701 DOI: 10.1038/s41570-021-00251-y   
2021 Sarkar S, Tribedi P, Bhadra K. Structure-activity insights of harmine targeting DNA, ROS inducing cytotoxicity with PARP mediated apoptosis against cervical cancer, anti-biofilm formation and therapeutic study. Journal of Biomolecular Structure & Dynamics. 1-23. PMID 33480316 DOI: 10.1080/07391102.2021.1874533   
2021 Jeong SW, Kim MK, Zhao L, Yang SK, Jung JH, Lim HM, Lim S. Effects of Conserved Wedge Domain Residues on DNA Binding Activity of RecG Helicase. Frontiers in Genetics. 12: 634615. PMID 33613647 DOI: 10.3389/fgene.2021.634615   
2021 Hao N, Sullivan AE, Shearwin KE, Dodd IB. The loopometer: a quantitative in vivo assay for DNA-looping proteins. Nucleic Acids Research. PMID 33511418 DOI: 10.1093/nar/gkaa1284   
2021 Shin HR, See JE, Kweon J, Kim HS, Sung GJ, Park S, Jang AH, Jang G, Choi KC, Kim I, Kim JS, Kim Y. Small-molecule inhibitors of histone deacetylase improve CRISPR-based adenine base editing. Nucleic Acids Research. PMID 33544854 DOI: 10.1093/nar/gkab052   
2021 Fabbrizi MR, Hughes JR, Parsons JL. The Enzyme-Modified Neutral Comet (EMNC) Assay for Complex DNA Damage Detection. Methods and Protocols. 4. PMID 33669320 DOI: 10.3390/mps4010014   
2021 Nimbarte VD, Wirmer-Bartoschek J, Gande SL, Alshamleh I, Seibert M, Nasiri HR, Schnütgen F, Serve H, Schwalbe H. Synthesis and In vitro Evaluation of novel 5-nitroIndole Derivatives as c-Myc G-Quadruplex Binders with Anticancer Activities. Chemmedchem. PMID 33508167 DOI: 10.1002/cmdc.202000835   
2021 Cai Q, Li H, Cao W, Guifen Jie. Photoinduced-electron transfer coupled with DNA cross-chain displacement multiple amplification for fluorescence biosensing of MicroRNA. Analytica Chimica Acta. 1148: 238169. PMID 33516380 DOI: 10.1016/j.aca.2020.12.044   
2021 Ideta-Otsuka M, Miyai M, Yamamoto N, Tsuchimoto A, Tamura H, Tanemura K, Shibutani M, Igarashi K. Development of a new in vitro assay system for evaluating the effects of chemicals on DNA methylation. The Journal of Toxicological Sciences. 46: 83-90. PMID 33536392 DOI: 10.2131/jts.46.83   
2021 Xu J, Wang X, Zhang X, Yao L, Qin P, Lu Y, Chen Y, Zhang Y, Yan Y, Chen W. Periodically programmed building and collapse of DNA networks enables an ultrahigh signal amplification effect for ultrasensitive nucleic acids analysis. Analytica Chimica Acta. 1150: 338221. PMID 33583542 DOI: 10.1016/j.aca.2021.338221   
2021 Ray S, Tillo D, Durell SR, Khund-Sayeed S, Vinson C. REL Domain of NFATc2 Binding to Five Types of DNA Using Protein Binding Microarrays. Acs Omega. 6: 4147-4154. PMID 33644537 DOI: 10.1021/acsomega.0c04069   
2021 Kölmel DK, Zhu H, Flanagan ME, Sakata SK, Harris AR, Wan J, Morgan BA. Employing Photocatalysis for the Design and Preparation of DNA-encoded Libraries: A Case Study. Chemical Record (New York, N.Y.). PMID 33570227 DOI: 10.1002/tcr.202000148   
2021 Pyne ALB, Noy A, Main KHS, Velasco-Berrelleza V, Piperakis MM, Mitchenall LA, Cugliandolo FM, Beton JG, Stevenson CEM, Hoogenboom BW, Bates AD, Maxwell A, Harris SA. Base-pair resolution analysis of the effect of supercoiling on DNA flexibility and major groove recognition by triplex-forming oligonucleotides. Nature Communications. 12: 1053. PMID 33594049 DOI: 10.1038/s41467-021-21243-y   
2021 Li D, Yang E, Luo Z, Xie Q, Duan Y. An enzyme-mediated universal fluorescent biosensor template for pathogen detection based on a three-dimensional DNA walker and catalyzed hairpin assembly. Nanoscale. PMID 33471006 DOI: 10.1039/d0nr07593k   
2021 Liang L, Wang Z, Qu L, Huang W, Guo S, Guan X, Zhang W, Sun F, Yuan H, Zou H, Liu H, Yu Z. Single-molecule multiplexed profiling of protein-DNA complexes using Magnetic Tweezers. The Journal of Biological Chemistry. 100327. PMID 33493518 DOI: 10.1016/j.jbc.2021.100327   
2021 Tumuluri VS, Rajgor V, Xu SY, Chouhan OP, Saikrishnan K. Mechanism of DNA cleavage by the endonuclease SauUSI: a major barrier to horizontal gene transfer and antibiotic resistance in Staphylococcus aureus. Nucleic Acids Research. PMID 33533920 DOI: 10.1093/nar/gkab042   
2021 Vasquez G, Freestone GC, Wan WB, Low A, De Hoyos CL, Yu J, Prakash TP, Ǿstergaard ME, Liang XH, Crooke ST, Swayze EE, Migawa MT, Seth PP. Site-specific incorporation of 5'-methyl DNA enhances the therapeutic profile of gapmer ASOs. Nucleic Acids Research. PMID 33544849 DOI: 10.1093/nar/gkab047   
2021 McGillick J, Ames JR, Murphy T, Bourne CR. A YoeB toxin cleaves both RNA and DNA. Scientific Reports. 11: 3592. PMID 33574407 DOI: 10.1038/s41598-021-82950-6   
2021 Hao Y, Li Y, Song L, Deng Z. Flash Synthesis of Spherical Nucleic Acids with Record DNA Density. Journal of the American Chemical Society. PMID 33599474 DOI: 10.1021/jacs.1c00568   
2021 Jiang J, Du X. DNA-targeted formation and catalytic reactions of DNAzymes for label-free ratiometric electrochemiluminescence biosensing. Talanta. 225: 121964. PMID 33592718 DOI: 10.1016/j.talanta.2020.121964