| Year |
Citation |
Score |
| 2024 |
Yang K, Islas N, Jewell S, Wu D, Jha A, Radens CM, Pleiss JA, Lynch KW, Barash Y, Choi PS. Machine learning-optimized targeted detection of alternative splicing. Nucleic Acids Research. PMID 39727154 DOI: 10.1093/nar/gkae1260 |
0.731 |
|
| 2024 |
Yang K, Islas N, Jewell S, Jha A, Radens CM, Pleiss JA, Lynch KW, Barash Y, Choi PS. Machine learning-optimized targeted detection of alternative splicing. Biorxiv : the Preprint Server For Biology. PMID 39386495 DOI: 10.1101/2024.09.20.614162 |
0.731 |
|
| 2024 |
Downs SR, Grace B, Pleiss JA. Decoding branch points and unlocking splicing secrets. Nature Structural & Molecular Biology. PMID 38740946 DOI: 10.1038/s41594-024-01308-4 |
0.658 |
|
| 2023 |
Dwyer ZW, Pleiss JA. The problem of selection bias in studies of pre-mRNA splicing. Nature Communications. 14: 1966. PMID 37031238 DOI: 10.1038/s41467-023-37650-2 |
0.69 |
|
| 2022 |
Gildea MA, Dwyer ZW, Pleiss JA. Transcript-specific determinants of pre-mRNA splicing revealed through in vivo kinetic analyses of the 1 and 2 chemical steps. Molecular Cell. PMID 35830855 DOI: 10.1016/j.molcel.2022.06.020 |
0.742 |
|
| 2020 |
Williams JA, Dwyer Z, Fair B, Larson A, Pleiss JA, Inada M. The Search for Novel Splicing Factors: Mapping Mutations in a Temperature‐Sensitive Schizosaccharomyces pombe Library The Faseb Journal. 34: 1-1. DOI: 10.1096/Fasebj.2020.34.S1.04400 |
0.689 |
|
| 2019 |
Gildea MA, Dwyer ZW, Pleiss JA. Multiplexed Primer Extension sequencing: a targeted RNA-seq method that enables high-precision quantitation of mRNA splicing isoforms and rare pre-mRNA splicing intermediates. Methods (San Diego, Calif.). PMID 31121301 DOI: 10.1016/J.Ymeth.2019.05.013 |
0.777 |
|
| 2019 |
Xu H, Fair BJ, Dwyer ZW, Gildea M, Pleiss JA. Detection of splice isoforms and rare intermediates using multiplexed primer extension sequencing. Nature Methods. 16: 55-58. PMID 30573814 DOI: 10.1038/S41592-018-0258-X |
0.756 |
|
| 2017 |
Thakran P, Pandit PA, Datta S, Kolathur KK, Pleiss JA, Mishra SK. Sde2 is an intron-specific pre-mRNA splicing regulator activated by ubiquitin-like processing. The Embo Journal. PMID 28947618 DOI: 10.15252/Embj.201796751 |
0.786 |
|
| 2017 |
Yeh CS, Chang SL, Chen JH, Wang HK, Chou YC, Wang CH, Huang SH, Larson A, Pleiss JA, Chang WH, Chang TH. The conserved AU dinucleotide at the 5' end of nascent U1 snRNA is optimized for the interaction with nuclear cap-binding-complex. Nucleic Acids Research. 45: 9679-9693. PMID 28934473 DOI: 10.1093/Nar/Gkx608 |
0.741 |
|
| 2017 |
Mayerle M, Raghavan M, Ledoux S, Price A, Stepankiw N, Hadjivassiliou H, Moehle EA, Mendoza SD, Pleiss JA, Guthrie C, Abelson J. Structural toggle in the RNaseH domain of Prp8 helps balance splicing fidelity and catalytic efficiency. Proceedings of the National Academy of Sciences of the United States of America. PMID 28416677 DOI: 10.1073/Pnas.1701462114 |
0.755 |
|
| 2016 |
Fair BJ, Pleiss JA. The power of fission: yeast as a tool for understanding complex splicing. Current Genetics. PMID 27628706 DOI: 10.1007/S00294-016-0647-6 |
0.761 |
|
| 2016 |
Inada M, Nichols RJ, Parsa JY, Homer CM, Benn RA, Hoxie RS, Madhani HD, Shuman S, Schwer B, Pleiss JA. Phospho-site mutants of the RNA Polymerase II C-terminal domain alter subtelomeric gene expression and chromatin modification state in fission yeast. Nucleic Acids Research. PMID 27402158 DOI: 10.1093/Nar/Gkw603 |
0.809 |
|
| 2016 |
Larson A, Fair BJ, Pleiss JA. Interconnections Between RNA-Processing Pathways Revealed by a Sequencing Based Genetic Screen for Pre-mRNA Splicing Mutants in Fission Yeast. G3 (Bethesda, Md.). PMID 27172183 DOI: 10.1534/G3.116.027508 |
0.78 |
|
| 2016 |
Alfonso-Parra C, Ahmed-Braimah YH, Degner EC, Avila FW, Villarreal SM, Pleiss JA, Wolfner MF, Harrington LC. Mating-Induced Transcriptome Changes in the Reproductive Tract of Female Aedes aegypti. Plos Neglected Tropical Diseases. 10: e0004451. PMID 26901677 DOI: 10.1371/Journal.Pntd.0004451 |
0.709 |
|
| 2016 |
Vo TV, Das J, Meyer MJ, Cordero NA, Akturk N, Wei X, Fair BJ, Degatano AG, Fragoza R, Liu LG, Matsuyama A, Trickey M, Horibata S, Grimson A, Yamano H, ... ... Pleiss JA, et al. A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human. Cell. 164: 310-323. PMID 26771498 DOI: 10.1016/J.Cell.2015.11.037 |
0.712 |
|
| 2015 |
Henne WM, Zhu L, Balogi Z, Stefan C, Pleiss JA, Emr SD. Mdm1/Snx13 is a novel ER-endolysosomal interorganelle tethering protein. The Journal of Cell Biology. 210: 541-51. PMID 26283797 DOI: 10.1083/Jcb.201503088 |
0.697 |
|
| 2015 |
Stepankiw N, Raghavan M, Fogarty EA, Grimson A, Pleiss JA. Widespread alternative and aberrant splicing revealed by lariat sequencing. Nucleic Acids Research. 43: 8488-501. PMID 26261211 DOI: 10.1093/Nar/Gkv763 |
0.759 |
|
| 2013 |
Cui J, Sartain CV, Pleiss JA, Wolfner MF. Cytoplasmic polyadenylation is a major mRNA regulator during oogenesis and egg activation in Drosophila. Developmental Biology. 383: 121-31. PMID 23978535 DOI: 10.1016/J.Ydbio.2013.08.013 |
0.738 |
|
| 2013 |
Awan AR, Manfredo A, Pleiss JA. Lariat sequencing in a unicellular yeast identifies regulated alternative splicing of exons that are evolutionarily conserved with humans. Proceedings of the National Academy of Sciences of the United States of America. 110: 12762-7. PMID 23861491 DOI: 10.1073/Pnas.1218353110 |
0.748 |
|
| 2013 |
Das J, Vo TV, Wei X, Mellor JC, Tong V, Degatano AG, Wang X, Wang L, Cordero NA, Kruer-Zerhusen N, Matsuyama A, Pleiss JA, Lipkin SM, Yoshida M, Roth FP, et al. Cross-species protein interactome mapping reveals species-specific wiring of stress response pathways. Science Signaling. 6: ra38. PMID 23695164 DOI: 10.1126/Scisignal.2003350 |
0.689 |
|
| 2012 |
Weiner A, Chen HV, Liu CL, Rahat A, Klien A, Soares L, Gudipati M, Pfeffner J, Regev A, Buratowski S, Pleiss JA, Friedman N, Rando OJ. Systematic dissection of roles for chromatin regulators in a yeast stress response. Plos Biology. 10: e1001369. PMID 22912562 DOI: 10.1371/Journal.Pbio.1001369 |
0.729 |
|
| 2012 |
Albulescu LO, Sabet N, Gudipati M, Stepankiw N, Bergman ZJ, Huffaker TC, Pleiss JA. A quantitative, high-throughput reverse genetic screen reveals novel connections between Pre-mRNA splicing and 5' and 3' end transcript determinants. Plos Genetics. 8: e1002530. PMID 22479188 DOI: 10.1371/Journal.Pgen.1002530 |
0.782 |
|
| 2010 |
Inada M, Pleiss JA. Genome-wide approaches to monitor pre-mRNA splicing. Methods in Enzymology. 470: 51-75. PMID 20946806 DOI: 10.1016/S0076-6879(10)70003-3 |
0.784 |
|
| 2010 |
Abelson J, Blanco M, Ditzler MA, Fuller F, Aravamudhan P, Wood M, Villa T, Ryan DE, Pleiss JA, Maeder C, Guthrie C, Walter NG. Conformational dynamics of single pre-mRNA molecules during in vitro splicing. Nature Structural & Molecular Biology. 17: 504-12. PMID 20305654 DOI: 10.1038/Nsmb.1767 |
0.818 |
|
| 2010 |
Sahi C, Lee T, Inada M, Pleiss JA, Craig EA. Cwc23, an essential J protein critical for pre-mRNA splicing with a dispensable J domain. Molecular and Cellular Biology. 30: 33-42. PMID 19822657 DOI: 10.1128/Mcb.00842-09 |
0.785 |
|
| 2009 |
Zhang L, Xu T, Maeder C, Bud LO, Shanks J, Nix J, Guthrie C, Pleiss JA, Zhao R. Structural evidence for consecutive Hel308-like modules in the spliceosomal ATPase Brr2 Nature Structural and Molecular Biology. 16: 731-739. PMID 19525970 DOI: 10.1038/Nsmb.1625 |
0.776 |
|
| 2008 |
Coughlin DJ, Pleiss JA, Walker SC, Whitworth GB, Engelke DR. Genome-wide search for yeast RNase P substrates reveals role in maturation of intron-encoded box C/D small nucleolar RNAs. Proceedings of the National Academy of Sciences of the United States of America. 105: 12218-23. PMID 18713869 DOI: 10.1073/Pnas.0801906105 |
0.79 |
|
| 2007 |
Pleiss JA, Whitworth GB, Bergkessel M, Guthrie C. Rapid, transcript-specific changes in splicing in response to environmental stress. Molecular Cell. 27: 928-37. PMID 17889666 DOI: 10.1016/J.Molcel.2007.07.018 |
0.774 |
|
| 2007 |
Pleiss JA, Whitworth GB, Bergkessel M, Guthrie C. Transcript specificity in yeast pre-mRNA splicing revealed by mutations in core spliceosomal components. Plos Biology. 5: e90. PMID 17388687 DOI: 10.1371/Journal.Pbio.0050090 |
0.798 |
|
| 2006 |
Stark MR, Pleiss JA, Deras M, Scaringe SA, Rader SD. An RNA ligase-mediated method for the efficient creation of large, synthetic RNAs. Rna (New York, N.Y.). 12: 2014-9. PMID 16983143 DOI: 10.1261/Rna.93506 |
0.743 |
|
| 2002 |
Villa T, Pleiss JA, Guthrie C. Spliceosomal snRNAs: Mg(2+)-dependent chemistry at the catalytic core? Cell. 109: 149-52. PMID 12007401 DOI: 10.1016/S0092-8674(02)00726-2 |
0.762 |
|
| 2001 |
Wolfson AD, LaRiviere FJ, Pleiss JA, Dale T, Asahara H, Uhlenbeck OC. tRNA conformity. Cold Spring Harbor Symposia On Quantitative Biology. 66: 185-93. PMID 12762021 |
0.727 |
|
| 2001 |
Pleiss JA, Uhlenbeck OC. Identification of thermodynamically relevant interactions between EF-Tu and backbone elements of tRNA. Journal of Molecular Biology. 308: 895-905. PMID 11352580 DOI: 10.1006/Jmbi.2001.4612 |
0.746 |
|
| 2000 |
Pleiss JA, Wolfson AD, Uhlenbeck OC. Mapping contacts between Escherichia coli alanyl tRNA synthetase and 2' hydroxyls using a complete tRNA molecule. Biochemistry. 39: 8250-8. PMID 10889033 DOI: 10.1021/Bi0001022 |
0.761 |
|
| 2000 |
Piepenburg O, Pape T, Pleiss JA, Wintermeyer W, Uhlenbeck OC, Rodnina MV. Intact aminoacyl-tRNA is required to trigger GTP hydrolysis by elongation factor Tu on the ribosome. Biochemistry. 39: 1734-8. PMID 10677222 DOI: 10.1021/Bi992331Y |
0.781 |
|
| 1998 |
Pleiss JA, Derrick ML, Uhlenbeck OC. T7 RNA polymerase produces 5' end heterogeneity during in vitro transcription from certain templates. Rna (New York, N.Y.). 4: 1313-7. PMID 9769105 DOI: 10.1017/S135583829800106X |
0.794 |
|
| 1998 |
Wolfson AD, Pleiss JA, Uhlenbeck OC. A new assay for tRNA aminoacylation kinetics. Rna (New York, N.Y.). 4: 1019-23. PMID 9701292 DOI: 10.1017/S1355838298980700 |
0.73 |
|
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