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Rui Sun - Publications

Affiliations: 
University of Hawaii, Honolulu, HI, United States 
Area:
Computational Chemistry
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43 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Aydin F, Sun R, Swanson JMJ. Mycolactone Toxin Membrane Permeation: Atomistic versus Coarse-Grained MARTINI Simulations. Biophysical Journal. PMID 31174850 DOI: 10.1016/j.bpj.2019.05.012  0.52
2019 Wu T, Li F, Chen Y, Wei H, Tian Z, Sun C, Sun R. CD4 T Cells Play a Critical Role in Microbiota-Maintained Anti-HBV Immunity in a Mouse Model. Frontiers in Immunology. 10: 927. PMID 31114580 DOI: 10.3389/fimmu.2019.00927  0.32
2019 Bai L, Peng H, Hao X, Tang L, Sun C, Zheng M, Liu F, Lian Z, Bai L, Wei H, Sun R, Tian Z. CD8 T Cells Promote Maturation of Liver-Resident NK Cells via the CD70-CD27 axis. Hepatology (Baltimore, Md.). PMID 31077406 DOI: 10.1002/hep.30757  0.32
2019 Sun H, Xu J, Huang Q, Huang M, Li K, Qu K, Wen H, Lin R, Zheng M, Wei H, Xiao W, Sun R, Tian Z, Sun C. Correction: Reduced CD160 Expression Contributes to Impaired NK-cell Function and Poor Clinical Outcomes in Patients with HCC. Cancer Research. 79: 1714. PMID 30936078 DOI: 10.1158/0008-5472.CAN-19-0630  0.32
2019 Su R, Zheng H, Dong S, Sun R, Qiao S, Sun H, Ma X, Zhang T, Sun C. Facile detection of melamine by a FAM-aptamer-G-quadruplex construct. Analytical and Bioanalytical Chemistry. PMID 30863884 DOI: 10.1007/s00216-019-01688-3  0.32
2019 Zhou J, Peng H, Li K, Qu K, Wang B, Wu Y, Ye L, Dong Z, Wei H, Sun R, Tian Z. Liver-Resident NK Cells Control Antiviral Activity of Hepatic T Cells via the PD-1-PD-L1 Axis. Immunity. PMID 30709740 DOI: 10.1016/j.immuni.2018.12.024  0.4
2019 Zong L, Peng H, Sun C, Li F, Zheng M, Chen Y, Wei H, Sun R, Tian Z. Breakdown of adaptive immunotolerance induces hepatocellular carcinoma in HBsAg-tg mice. Nature Communications. 10: 221. PMID 30644386 DOI: 10.1038/s41467-018-08096-8  0.32
2019 Sun H, Sun C, Xiao W, Sun R. Tissue-resident lymphocytes: from adaptive to innate immunity. Cellular & Molecular Immunology. PMID 30635650 DOI: 10.1038/s41423-018-0192-y  0.32
2018 Sun H, Huang Q, Huang M, Wen H, Lin R, Zheng M, Qu K, Li K, Wei H, Xiao W, Sun R, Tian Z, Sun C. Human CD96 correlates to NK cell exhaustion and predicts the prognosis of human hepatocellular carcinoma. Hepatology (Baltimore, Md.). PMID 30411378 DOI: 10.1002/hep.30347  0.32
2018 Sun R, Huang Q, Xia M, Zhang J. Video-Based Person Re-Identification by an End-To-End Learning Architecture with Hybrid Deep Appearance-Temporal Feature. Sensors (Basel, Switzerland). 18. PMID 30380623 DOI: 10.3390/s18113669  0.4
2018 Sun R, Sun L, Han C. Partial-least-squares and canonical-correlation analysis of chemical constituents and active ingredients of new types of Chinese mulberries. Food Science & Nutrition. 6: 1950-1959. PMID 30349685 DOI: 10.1002/fsn3.753  0.64
2018 Ni X, Fu B, Zhang J, Sun R, Tian Z, Wei H. Cytokine-Based Generation of CD49aEomes Natural Killer Cell Subsets. Frontiers in Immunology. 9: 2126. PMID 30319610 DOI: 10.3389/fimmu.2018.02126  0.4
2018 Li C, Jing B, Ke L, Li B, Xia W, He C, Qian C, Zhao C, Mai H, Chen M, Cao K, Mo H, Guo L, Chen Q, Tang L, ... ... Sun R, et al. Development and validation of an endoscopic images-based deep learning model for detection with nasopharyngeal malignancies. Cancer Communications (London, England). 38: 59. PMID 30253801 DOI: 10.1186/s40880-018-0325-9  0.4
2018 Sun H, Xu J, Huang Q, Huang M, Li K, Qu K, Wen H, Lin R, Zheng M, Wei H, Xiao W, Sun R, Tian Z, Sun C. Reduced CD160 expression contributes to impaired NK cell function and poor clinical outcomes in patients with HCC. Cancer Research. PMID 30232222 DOI: 10.1158/0008-5472.CAN-18-1049  0.32
2018 Xu K, Lou Y, Sun R, Liu Y, Li B, Li J, Huang Q, Wan W, Xiao J. Establishment of a nomogram-based model for predicting the prognostic value of inflammatory biomarkers and preoperative D-Dimer level in spinal Ewing's sarcoma family tumors: a retrospective study of 83 patients. World Neurosurgery. PMID 30218803 DOI: 10.1016/j.wneu.2018.09.022  0.32
2018 Sun R, Han Y, Swanson JMJ, Tan JS, Rose JP, Voth GA. Molecular transport through membranes: Accurate permeability coefficients from multidimensional potentials of mean force and local diffusion constants. The Journal of Chemical Physics. 149: 072310. PMID 30134730 DOI: 10.1063/1.5027004  0.64
2018 Huang Q, Huang M, Meng F, Sun R. Activated pancreatic stellate cells inhibit NK cell function in the human pancreatic cancer microenvironment. Cellular & Molecular Immunology. PMID 29628497 DOI: 10.1038/s41423-018-0014-2  0.32
2018 Sun C, Lan P, Han Q, Huang M, Zhang Z, Xu G, Song J, Wang J, Wei H, Zhang J, Sun R, Zhang C, Tian Z. Oncofetal gene SALL4 reactivation by hepatitis B virus counteracts miR-200c in PD-L1-induced T cell exhaustion. Nature Communications. 9: 1241. PMID 29593314 DOI: 10.1038/s41467-018-03584-3  0.4
2018 Li Y, Su R, Xu J, Bie J, Sun R, Wang L, Liu X, Sun C. Aptamers-Based Sensing Strategy for 17-Estradiol Through Fluorescence Resonance Energy Transfer Between Oppositely Charged CdTe Quantum Dots and Gold Nanoparticles. Journal of Nanoscience and Nanotechnology. 18: 1517-1527. PMID 29448625 DOI: 10.1166/jnn.2018.14235  0.32
2018 Zhang Y, Sun R, Zhou A, Zhang J, Luan Y, Jia J, Yue X, Zhang J. Microbial community response reveals underlying mechanism of industrial-scale manganese sand biofilters used for the simultaneous removal of iron, manganese and ammonia from groundwater. Amb Express. 8: 2. PMID 29313157 DOI: 10.1186/s13568-017-0534-7  0.4
2017 Wu Y, Li Y, Fu B, Jin L, Zheng X, Zhang A, Sun R, Tian Z, Wei H. Programmed differentiated natural killer cells kill leukemia cells by engaging SLAM family receptors. Oncotarget. 8: 57024-57038. PMID 28915651 DOI: 10.18632/oncotarget.18659  0.4
2017 Huang M, Sun R, Huang Q, Tian Z. Technical Improvement and Application of Hydrodynamic Gene Delivery in Study of Liver Diseases. Frontiers in Pharmacology. 8: 591. PMID 28912718 DOI: 10.3389/fphar.2017.00591  0.32
2017 Yu J, Chen Y, Wu Y, Ye L, Lian Z, Wei H, Sun R, Tian Z. The differential organogenesis and functionality of two liver-draining lymph nodes in mice. Journal of Autoimmunity. PMID 28886898 DOI: 10.1016/j.jaut.2017.08.005  0.4
2017 Liu X, Zhao C, Yang L, Zhang J, Sun R. Indirect dynamics in SN2@N: insight into the influence of central atoms. Physical Chemistry Chemical Physics : Pccp. PMID 28816323 DOI: 10.1039/c7cp04199c  0.4
2017 Sun R, Sun P, Zhang J, Esquivel-Elizondo S, Wu Y. Microorganisms-based methods for harmful algal blooms control: A review. Bioresource Technology. PMID 28801171 DOI: 10.1016/j.biortech.2017.07.175  0.4
2017 Li Y, Liu M, Zuo Z, Liu J, Yu X, Guan Y, Zhan R, Han Q, Zhang J, Zhou R, Sun R, Tian Z, Zhang C. TLR9 Regulates the NF-κB-NLRP3-IL-1β Pathway Negatively in Salmonella-Induced NKG2D-Mediated Intestinal Inflammation. Journal of Immunology (Baltimore, Md. : 1950). PMID 28576980 DOI: 10.4049/jimmunol.1601416  0.4
2017 Sun R, Sode O, Dama JF, Voth GA. Simulating Protein Mediated Hydrolysis of ATP and Other Nucleoside Triphosphates by Combining QM/MM Molecular Dynamics with Advances in Metadynamics. Journal of Chemical Theory and Computation. PMID 28345907 DOI: 10.1021/acs.jctc.7b00077  0.64
2017 Sun C, Xu J, Huang Q, Huang M, Wen H, Zhang C, Wang J, Song J, Zheng M, Sun H, Wei H, Xiao W, Sun R, Tian Z. High NKG2A expression contributes to NK cell exhaustion and predicts a poor prognosis of patients with liver cancer. Oncoimmunology. 6: e1264562. PMID 28197391 DOI: 10.1080/2162402X.2016.1264562  0.32
2016 Li Y, Wu Y, Zheng X, Cong J, Liu Y, Li J, Sun R, Tian ZG, Wei HM. Cytoplasm-Translocated Ku70/80 Complex Sensing of HBV DNA Induces Hepatitis-Associated Chemokine Secretion. Frontiers in Immunology. 7: 569. PMID 27994596 DOI: 10.3389/fimmu.2016.00569  0.4
2016 Sun H, Song J, Weng C, Xu J, Huang M, Huang Q, Sun R, Xiao W, Sun C. Decreased expression of the macrophage scavenger receptor MARCO is associated with tumour progression and poor prognosis in human hepatocellular carcinoma. Journal of Gastroenterology and Hepatology. PMID 27806438 DOI: 10.1111/jgh.13633  0.32
2016 Sun R, Dama JF, Tan JS, Rose JP, Voth GA. Transition-Tempered Metadynamics is a Promising Tool for Studying the Permeation of Drug-like Molecules through Membranes. Journal of Chemical Theory and Computation. PMID 27598403 DOI: 10.1021/acs.jctc.6b00206  0.64
2015 Dama JF, Hocky GM, Sun R, Voth GA. Exploring Valleys without Climbing Every Peak: More Efficient and Forgiving Metabasin Metadynamics via Robust On-the-Fly Bias Domain Restriction. Journal of Chemical Theory and Computation. PMID 26587809 DOI: 10.1021/acs.jctc.5b00907  0.56
2015 Sun R, Granucci G, Paul AK, Siebert M, Liang HJ, Cheong G, Hase WL, Persico M. Potential energy surfaces for the HBr(+) + CO2 → Br + HOCO(+) reaction in the HBr(+)  (2)Π3/2 and (2)Π1/2 spin-orbit states. The Journal of Chemical Physics. 142: 104302. PMID 25770535 DOI: 10.1063/1.4913767  0.36
2015 Xie J, McClellan M, Sun R, Kohale SC, Govind N, Hase WL. Direct dynamics simulation of dissociation of the [CH3--I--OH]- ion-molecule complex. The Journal of Physical Chemistry. A. 119: 817-25. PMID 25574690 DOI: 10.1021/jp511898y  0.32
2015 Sun R, Davda CJ, Zhang J, Hase WL. Comparison of direct dynamics simulations with different electronic structure methods. F(-) + CH3I with MP2 and DFT/B97-1. Physical Chemistry Chemical Physics : Pccp. 17: 2589-97. PMID 25494478 DOI: 10.1039/c4cp03589e  0.4
2014 Paul AK, Kohale SC, Pratihar S, Sun R, North SW, Hase WL. A unified model for simulating liquid and gas phase, intermolecular energy transfer: N₂ + C₆F₆ collisions. The Journal of Chemical Physics. 140: 194103. PMID 24852526 DOI: 10.1063/1.4875516  0.36
2014 Sun R, Siebert MR, Xu L, Chambreau SD, Vaghjiani GL, Lischka H, Liu J, Hase WL. Direct dynamics simulation of the activation and dissociation of 1,5-dinitrobiuret (HDNB). The Journal of Physical Chemistry. A. 118: 2228-36. PMID 24571276 DOI: 10.1021/jp5002622  0.36
2013 Zhang J, Lourderaj U, Sun R, Mikosch J, Wester R, Hase WL. Simulation studies of the Cl- + CH3I SN2 nucleophilic substitution reaction: comparison with ion imaging experiments. The Journal of Chemical Physics. 138: 114309. PMID 23534641 DOI: 10.1063/1.4795495  0.4
2013 Xie J, Sun R, Siebert MR, Otto R, Wester R, Hase WL. Direct dynamics simulations of the product channels and atomistic mechanisms for the OH(-) + CH3I reaction. Comparison with experiment. The Journal of Physical Chemistry. A. 117: 7162-78. PMID 23514259 DOI: 10.1021/jp4008027  0.36
2013 Mikosch J, Zhang J, Trippel S, Eichhorn C, Otto R, Sun R, de Jong WA, Weidemüller M, Hase WL, Wester R. Indirect dynamics in a highly exoergic substitution reaction. Journal of the American Chemical Society. 135: 4250-9. PMID 23324058 DOI: 10.1021/ja308042v  0.36
2012 Siebert MR, Manikandan P, Sun R, Tantillo DJ, Hase WL. Gas-Phase Chemical Dynamics Simulations on the Bifurcating Pathway of the Pimaradienyl Cation Rearrangement: Role of Enzymatic Steering in Abietic Acid Biosynthesis. Journal of Chemical Theory and Computation. 8: 1212-22. PMID 26596738 DOI: 10.1021/ct300037p  0.36
2012 Sun R, Park K, de Jong WA, Lischka H, Windus TL, Hase WL. Direct dynamics simulation of dioxetane formation and decomposition via the singlet ·O-O-CH2-CH2· biradical: non-RRKM dynamics. The Journal of Chemical Physics. 137: 044305. PMID 22852616 DOI: 10.1063/1.4736843  0.36
2011 Yang L, Sun R, Hase WL. Use of Direct Dynamics Simulations to Determine Unimolecular Reaction Paths and Arrhenius Parameters for Large Molecules. Journal of Chemical Theory and Computation. 7: 3478-83. PMID 26598247 DOI: 10.1021/ct200459v  0.36
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