David Robinson Goodlett, MS, PhD - Publications

2000-2004 Proteomics Institute for Systems Biology, Seattle, Seattle, WA, United States 
 2004-2012 Medicinal Chemistry University of Washington School of Pharmacy 
 2013- Pharmaceutical Sciences University of Maryland School of Pharmacy 
structure function relationships in proteins and lipids i

166 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Homayounfar N, Khan MM, Ji Y, Khoury ZH, Oates TW, Goodlett DR, Chellaiah M, Masri R. The effect of embryonic origin on the osteoinductive potential of bone allografts. The Journal of Prosthetic Dentistry. PMID 30598313 DOI: 10.1016/j.prosdent.2018.09.003  0.68
2018 Liang T, Leung LM, Opene B, Fondrie WE, Lee YI, Chandler CE, Yoon SH, Doi Y, Ernst RK, Goodlett DR. Rapid microbial identification and antibiotic resistance detection by mass spectrometric analysis of membrane lipids. Analytical Chemistry. PMID 30571097 DOI: 10.1021/acs.analchem.8b02611  1
2018 Leung LM, McElheny CL, Gardner FM, Chandler CE, Bowler SL, Mettus RT, Spychala CN, Fowler EL, Opene BNA, Myers RA, Goodlett DR, Doi Y, Ernst RK. A Prospective Study of Complex Isolates and Colistin Susceptibility Monitoring by Mass Spectrometry of Microbial Membrane Glycolipids. Journal of Clinical Microbiology. PMID 30567747 DOI: 10.1128/JCM.01100-18  0.96
2018 Fondrie WE, Liang T, Oyler BL, Leung LM, Ernst RK, Strickland DK, Goodlett DR. Pathogen Identification Direct From Polymicrobial Specimens Using Membrane Glycolipids. Scientific Reports. 8: 15857. PMID 30367087 DOI: 10.1038/s41598-018-33681-8  0.96
2018 Schneider T, Oyler BL, Yoon SH, Liang T, Yen GS, Kilgour DPA, Nilsson E, Goodlett DR. Rapid Food Product Analysis by Surface Acoustic Wave Nebulization Coupled Mass Spectrometry. Food Analytical Methods. 11: 2447-2454. PMID 30271524 DOI: 10.1007/s12161-018-1232-z  1
2018 Khan MM, Ernst O, Sun J, Fraser IDC, Ernst RK, Goodlett DR, Nita-Lazar A. Mass spectrometry based structural analysis and systems immunoproteomics strategies for deciphering the host response to endotoxin. Journal of Molecular Biology. PMID 29949751 DOI: 10.1016/j.jmb.2018.06.032  0.96
2018 Bhosale SD, Moulder R, Venäläinen MS, Koskinen JS, Pitkänen N, Juonala MT, Kähönen MAP, Lehtimäki TJ, Viikari JSA, Elo LL, Goodlett DR, Lahesmaa R, Raitakari OT. Serum Proteomic Profiling to Identify Biomarkers of Premature Carotid Atherosclerosis. Scientific Reports. 8: 9209. PMID 29907817 DOI: 10.1038/s41598-018-27265-9  0.52
2018 Awasthi S, Maity T, Oyler BL, Zhang X, Goodlett DR, Guha U. Dataset describing the development, optimization and application of SRM/MRM based targeted proteomics strategy for quantification of potential biomarkers of EGFR TKI sensitivity. Data in Brief. 19: 424-436. PMID 29900338 DOI: 10.1016/j.dib.2018.04.086  0.96
2018 Mohammad I, Nousiainen K, Bhosale SD, Starskaia I, Moulder R, Rokka A, Cheng F, Mohanasundaram P, Eriksson JE, Goodlett DR, Lähdesmäki H, Chen Z. Quantitative proteomic characterization and comparison of T helper 17 and induced regulatory T cells. Plos Biology. 16: e2004194. PMID 29851958 DOI: 10.1371/journal.pbio.2004194  0.52
2018 Oyler BL, Khan MM, Smith DF, Harberts EM, Kilgour DPA, Ernst RK, Cross AS, Goodlett DR. Correction to: Top Down Tandem Mass Spectrometric Analysis of a Chemically Modified Rough-Type Lipopolysaccharide Vaccine Candidate. Journal of the American Society For Mass Spectrometry. PMID 29687418 DOI: 10.1007/s13361-018-1960-8  0.96
2018 Awasthi S, Maity T, Oyler BL, Qi Y, Zhang X, Goodlett DR, Guha U. Quantitative targeted proteomic analysis of potential markers of tyrosine kinase inhibitor (TKI) sensitivity in EGFR mutated lung adenocarcinoma. Journal of Proteomics. PMID 29660496 DOI: 10.1016/j.jprot.2018.04.005  0.96
2018 Khan MM, Koppenol-Raab M, Kuriakose M, Manes NP, Goodlett DR, Nita-Lazar A. Host-pathogen dynamics through targeted secretome analysis of stimulated macrophages. Journal of Proteomics. PMID 29572161 DOI: 10.1016/j.jprot.2018.03.016  0.68
2018 Oyler BL, Khan MM, Smith DF, Harberts EM, Kilgour DPA, Ernst RK, Cross AS, Goodlett DR. Top Down Tandem Mass Spectrometric Analysis of a Chemically Modified Rough-Type Lipopolysaccharide Vaccine Candidate. Journal of the American Society For Mass Spectrometry. PMID 29464544 DOI: 10.1007/s13361-018-1897-y  0.96
2018 Moulder R, Schvartz D, Goodlett DR, Dayon L. Proteomics of Diabetes, Obesity, and Related Disorders. Proteomics. Clinical Applications. 12. PMID 29148229 DOI: 10.1002/prca.201600134  0.52
2017 Crawford MA, Fisher DJ, Leung LM, Lomonaco S, Lascols C, Cannatelli A, Giani T, Rossolini GM, Doi Y, Goodlett DR, Allard MW, Sharma SK, Khan E, Ernst RK, Hughes MA. CXC Chemokines Exhibit Bactericidal Activity against Multidrug-Resistant Gram-Negative Pathogens. Mbio. 8. PMID 29138303 DOI: 10.1128/mBio.01549-17  0.96
2017 Moulder R, Bhosale SD, Goodlett DR, Lahesmaa R. Analysis of the plasma proteome using iTRAQ and TMT-based Isobaric labeling. Mass Spectrometry Reviews. PMID 29120501 DOI: 10.1002/mas.21550  0.52
2017 Leung LM, Cooper VS, Rasko DA, Guo Q, Pacey MP, McElheny CL, Mettus RT, Yoon SH, Goodlett DR, Ernst RK, Doi Y. Structural modification of LPS in colistin-resistant, KPC-producing Klebsiella pneumoniae. The Journal of Antimicrobial Chemotherapy. PMID 28961916 DOI: 10.1093/jac/dkx234  1
2017 Khan MM, Tran BQ, Jang YJ, Park SH, Fondrie WE, Chowdhury K, Yoon SH, Goodlett DR, Chae SW, Chae HJ, Seo SY, Goo YA. Assessment of the Therapeutic Potential of Persimmon Leaf Extract on Prediabetic Subjects. Molecules and Cells. PMID 28681595 DOI: 10.14348/molcells.2017.2298  1
2017 Bhosale SD, Moulder R, Kouvonen P, Lahesmaa R, Goodlett DR. Mass Spectrometry-Based Serum Proteomics for Biomarker Discovery and Validation. Methods in Molecular Biology (Clifton, N.J.). 1619: 451-466. PMID 28674903 DOI: 10.1007/978-1-4939-7057-5_31  0.52
2017 Lund RJ, Huhtinen K, Salmi J, Rantala J, Nguyen EV, Moulder R, Goodlett DR, Lahesmaa R, Carpén O. DNA methylation and Transcriptome Changes Associated with Cisplatin Resistance in Ovarian Cancer. Scientific Reports. 7: 1469. PMID 28473707 DOI: 10.1038/s41598-017-01624-4  0.52
2017 Nguyen EV, Huhtinen K, Goo YA, Kaipio K, Andersson N, Rantanen V, Hynninen J, Lahesmaa R, Carpen O, Goodlett DR. Hyper-phosphorylation of Sequestosome-1 distinguishes resistance to cisplatin in patient derived high grade serous ovarian cancer cells. Molecular & Cellular Proteomics : McP. PMID 28455291 DOI: 10.1074/mcp.M116.058321  0.96
2017 Liu YY, Chandler CE, Leung LM, McElheny CL, Mettus RT, Shanks RM, Liu JH, Goodlett DR, Ernst RK, Doi Y. Structural Modification of Lipopolysaccharide Conferred by mcr-1 in Gram-Negative ESKAPE Pathogens. Antimicrobial Agents and Chemotherapy. PMID 28373195 DOI: 10.1128/AAC.00580-17  0.96
2017 Scott AJ, Oyler BL, Goodlett DR, Ernst RK. Lipid A structural modifications in extreme conditions and identification of unique modifying enzymes to define the Toll-like receptor 4 structure-activity relationship. Biochimica Et Biophysica Acta. PMID 28108356 DOI: 10.1016/j.bbalip.2017.01.004  0.96
2017 Moulder R, Bhosale SD, Lahesmaa R, Goodlett DR. The progress and potential of proteomic biomarkers for type 1 diabetes in children. Expert Review of Proteomics. 14: 31-41. PMID 27997253 DOI: 10.1080/14789450.2017.1265449  0.52
2016 Freiberg JA, Le Breton Y, Tran BQ, Scott AJ, Harro JM, Ernst RK, Goo YA, Mongodin EF, Goodlett DR, McIver KS, Shirtliff ME. Global Analysis and Comparison of the Transcriptomes and Proteomes of Group A Streptococcus Biofilms. Msystems. 1. PMID 27933318 DOI: 10.1128/mSystems.00149-16  0.96
2016 Kilgour DP, Hughes S, Kilgour SL, Mackay CL, Palmblad M, Tran BQ, Goo YA, Ernst RK, Clarke DJ, Goodlett DR. Autopiquer - a Robust and Reliable Peak Detection Algorithm for Mass Spectrometry. Journal of the American Society For Mass Spectrometry. PMID 27924495 DOI: 10.1007/s13361-016-1549-z  0.96
2016 Sharma S, Mishra R, Bigham GE, Wehman B, Khan MM, Xu H, Saha P, Goo YA, Datla SR, Chen L, Tulapurkar ME, Taylor BS, Yang P, Karathanasis SK, Goodlett DR, et al. A Deep Proteome Analysis Identifies the Complete Secretome as the Functional Unit of Human Cardiac Progenitor Cells. Circulation Research. PMID 27908912 DOI: 10.1161/CIRCRESAHA.116.309782  0.96
2016 Eshraghi A, Kim J, Walls AC, Ledvina HE, Miller CN, Ramsey KM, Whitney JC, Radey MC, Peterson SB, Ruhland BR, Tran BQ, Goo YA, Goodlett DR, Dove SL, Celli J, et al. Secreted Effectors Encoded within and outside of the Francisella Pathogenicity Island Promote Intramacrophage Growth. Cell Host & Microbe. 20: 573-583. PMID 27832588 DOI: 10.1016/j.chom.2016.10.008  0.96
2016 Rehman T, Khan MM, Shad MA, Hussain M, Oyler BL, Goo YA, Goodlett DR. Detection of Carbofuran-Protein Adducts in Serum of Occupationally Exposed Pesticide Factory Workers in Pakistan. Chemical Research in Toxicology. PMID 27657490 DOI: 10.1021/acs.chemrestox.6b00222  0.96
2016 Scott AJ, Flinders B, Cappell J, Liang T, Pelc RS, Tran B, Kilgour DP, Heeren RM, Goodlett DR, Ernst RK. Norharmane Matrix Enhances Detection of Endotoxin by MALDI-MS for Simultaneous Profiling of Pathogen, Host, and Vector Systems. Pathogens and Disease. PMID 27650574 DOI: 10.1093/femspd/ftw097  0.96
2016 Yoon SH, Liang T, Schneider T, Oyler BL, Chandler CE, Ernst RK, Yen GS, Huang Y, Nilsson E, Goodlett DR. Rapid Lipid A Structure Determination via Surface Acoustic Wave Nebulization and Hierarchical Tandem Mass Spectrometry Algorithm. Rapid Communications in Mass Spectrometry : Rcm. PMID 27582344 DOI: 10.1002/rcm.7728  1
2016 Li Y, Yoon SH, Wang X, Ernst RK, Goodlett DR. Structural Derivation of lipid A from Cronobacter sakazakii using Tandem Mass Spectrometry. Rapid Communications in Mass Spectrometry : Rcm. PMID 27502448 DOI: 10.1002/rcm.7712  1
2016 Lee CF, Chavez JD, Garcia-Menendez L, Choi YS, Roe ND, Chiao YA, Edgar JS, Goo YA, Goodlett DR, Bruce JE, Tian R. Normalization of NAD+ Redox Balance as a Therapy for Heart Failure. Circulation. PMID 27489254 DOI: 10.1161/CIRCULATIONAHA.116.022495  0.72
2016 Hecht AL, Casterline BW, Earley ZM, Goo YA, Goodlett DR, Bubeck Wardenburg J. Strain competition restricts colonization of an enteric pathogen and prevents colitis. Embo Reports. PMID 27432285 DOI: 10.15252/embr.201642282  0.96
2016 Huang Y, Heron SR, Clark AM, Edgar JS, Yoon SH, Kilgour DP, Turecek F, Aliseda A, Goodlett DR. Surface acoustic wave nebulization device with dual interdigitated transducers improves SAWN-MS performance. Journal of Mass Spectrometry : Jms. 51: 424-429. PMID 27270865 DOI: 10.1002/jms.3766  1
2016 Chapman JD, Edgar JS, Goodlett DR, Goo YA. Use of captive spray ionization to increase throughput of the data-independent acquisition technique PAcIFIC. Rapid Communications in Mass Spectrometry : Rcm. 30: 1101-7. PMID 27060837 DOI: 10.1002/rcm.7544  1
2016 Yen GS, Edgar JS, Yoon SH, Huang Y, Heron SR, Chiu DT, Goodlett DR. Polydimethylsiloxane microchannel coupled to surface acoustic wave nebulization mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 30: 1096-100. PMID 27003047 DOI: 10.1002/rcm.7531  1
2016 Wexler AG, Bao Y, Whitney JC, Bobay LM, Xavier JB, Schofield WB, Barry NA, Russell AB, Tran BQ, Goo YA, Goodlett DR, Ochman H, Mougous JD, Goodman AL. Human symbionts inject and neutralize antibacterial toxins to persist in the gut. Proceedings of the National Academy of Sciences of the United States of America. PMID 26957597 DOI: 10.1073/pnas.1525637113  1
2016 Tripathy S, Chapman JD, Han CY, Hogarth C, Arnold SL, Onken J, Kent T, Goodlett DR, Isoherranen N. All-trans-retinoic acid Enhances Mitochondrial Function in Models of Human Liver. Molecular Pharmacology. PMID 26921399 DOI: 10.1124/mol.116.103697  1
2016 Moulder R, Goo YA, Goodlett DR. Label-Free Quantitation for Clinical Proteomics. Methods in Molecular Biology (Clifton, N.J.). 1410: 65-76. PMID 26867738 DOI: 10.1007/978-1-4939-3524-6_4  0.96
2016 Tran BQ, Barton C, Feng J, Sandjong A, Yoon SH, Awasthi S, Liang T, Khan MM, Kilgour DP, Goodlett DR, Goo YA. Glycosylation characterization of therapeutic mAbs by top- and middle-down mass spectrometry. Data in Brief. 6: 68-76. PMID 26793758 DOI: 10.1016/j.dib.2015.11.031  1
2016 Hommersom B, Syed SU, Eijkel GB, Kilgour DP, Goodlett DR, Heeren RM. An ambient detection system for visualization of charged particles generated with ionization methods at atmospheric pressure. Rapid Communications in Mass Spectrometry : Rcm. 30: 352-8. PMID 26754127 DOI: 10.1002/rcm.7442  0.52
2016 Tran BQ, Goodlett DR, Goo YA. Advances in protein complex analysis by chemical cross-linking coupled with mass spectrometry (CXMS) and bioinformatics. Biochimica Et Biophysica Acta. 1864: 123-9. PMID 26025770 DOI: 10.1016/j.bbapap.2015.05.015  1
2015 Jung S, Danziger SA, Panchaud A, von Haller P, Aitchison JD, Goodlett DR. Systematic Analysis of Yeast Proteome Reveals Peptide Detectability Factors for Mass Spectrometry. Journal of Proteomics & Bioinformatics. 8: 231-239. PMID 26962293 DOI: 10.4172/jpb.1000374  0.88
2015 Monkkonen L, Edgar JS, Winters D, Heron SR, Mackay CL, Masselon CD, Stokes AA, Langridge-Smith PR, Goodlett DR. Screen-printed digital microfluidics combined with surface acoustic wave nebulization for hydrogen-deuterium exchange measurements. Journal of Chromatography. A. PMID 26826755 DOI: 10.1016/j.chroma.2015.12.048  1
2015 Tran BQ, Barton C, Feng J, Sandjong A, Yoon SH, Awasthi S, Liang T, Khan MM, Kilgour DP, Goodlett DR, Goo YA. Comprehensive glycosylation profiling of IgG and IgG-fusion proteins by top-down MS with multiple fragmentation techniques. Journal of Proteomics. PMID 26485299 DOI: 10.1016/j.jprot.2015.10.021  0.76
2015 Whitney JC, Quentin D, Sawai S, LeRoux M, Harding BN, Ledvina HE, Tran BQ, Robinson H, Goo YA, Goodlett DR, Raunser S, Mougous JD. An Interbacterial NAD(P)(+) Glycohydrolase Toxin Requires Elongation Factor Tu for Delivery to Target Cells. Cell. 163: 607-19. PMID 26456113 DOI: 10.1016/j.cell.2015.09.027  0.32
2015 Hittle LE, Powell DA, Jones JW, Tofigh M, Goodlett DR, Moskowitz SM, Ernst RK. Site-specific activity of the acyltransferases HtrB1 and HtrB2 in Pseudomonas aeruginosa lipid A biosynthesis. Pathogens and Disease. PMID 26223882 DOI: 10.1093/femspd/ftv053  0.96
2015 Kilgour DPA, Van Orden SL, Tran BQ, Goo YA, Goodlett DR. Producing isotopic distribution models for fully apodized absorption mode FT-MS Analytical Chemistry. 87: 5797-5801. PMID 25938639 DOI: 10.1021/acs.analchem.5b01032  1
2015 LeRoux M, Kirkpatrick RL, Montauti EI, Tran BQ, Peterson SB, Harding BN, Whitney JC, Russell AB, Traxler B, Goo YA, Goodlett DR, Wiggins PA, Mougous JD. Kin cell lysis is a danger signal that activates antibacterial pathways of Pseudomonas aeruginosa. Elife. 4. PMID 25643398 DOI: 10.7554/eLife.05701  1
2015 Moulder R, Bhosale SD, Erkkilä T, Laajala E, Salmi J, Nguyen EV, Kallionpää H, Mykkänen J, Vähä-Mäkilä M, Hyöty H, Veijola R, Ilonen J, Simell T, Toppari J, Knip M, ... Goodlett DR, et al. Serum proteomes distinguish children developing type 1 diabetes in a cohort with HLA-conferred susceptibility. Diabetes. 64: 2265-78. PMID 25616278 DOI: 10.2337/db14-0983  0.52
2014 Canterbury JD, Merrihew GE, MacCoss MJ, Goodlett DR, Shaffer SA. Comparison of data acquisition strategies on quadrupole ion trap instrumentation for shotgun proteomics. Journal of the American Society For Mass Spectrometry. 25: 2048-59. PMID 25261218 DOI: 10.1007/s13361-014-0981-1  1
2014 Swiderski K, Shaffer SA, Gallis B, Odom GL, Arnett AL, Scott Edgar J, Baum DM, Chee A, Naim T, Gregorevic P, Murphy KT, Moody J, Goodlett DR, Lynch GS, Chamberlain JS. Phosphorylation within the cysteine-rich region of dystrophin enhances its association with β-dystroglycan and identifies a potential novel therapeutic target for skeletal muscle wasting. Human Molecular Genetics. 23: 6697-711. PMID 25082828 DOI: 10.1093/hmg/ddu388  1
2014 Russell AB, Wexler AG, Harding BN, Whitney JC, Bohn AJ, Goo YA, Tran BQ, Barry NA, Zheng H, Peterson SB, Chou S, Gonen T, Goodlett DR, Goodman AL, Mougous JD. A type VI secretion-related pathway in Bacteroidetes mediates interbacterial antagonism. Cell Host & Microbe. 16: 227-36. PMID 25070807 DOI: 10.1016/j.chom.2014.07.007  1
2014 Nguyen EV, Gharib SA, Schnapp LM, Goodlett DR. Shotgun MS proteomic analysis of bronchoalveolar lavage fluid in normal subjects. Proteomics. Clinical Applications. 8: 737-47. PMID 24616423 DOI: 10.1002/prca.201300018  0.36
2014 Cary GA, Yoon SH, Torres CG, Wang K, Hays M, Ludlow C, Goodlett DR, Dudley AM. Identification and characterization of a drug-sensitive strain enables puromycin-based translational assays in Saccharomyces cerevisiae. Yeast (Chichester, England). 31: 167-78. PMID 24610064 DOI: 10.1002/yea.3007  1
2014 Whitney JC, Beck CM, Goo YA, Russell AB, Harding BN, De Leon JA, Cunningham DA, Tran BQ, Low DA, Goodlett DR, Hayes CS, Mougous JD. Genetically distinct pathways guide effector export through the type VI secretion system. Molecular Microbiology. 92: 529-42. PMID 24589350 DOI: 10.1111/mmi.12571  1
2014 Pan S, Chen R, Tamura Y, Crispin DA, Lai LA, May DH, McIntosh MW, Goodlett DR, Brentnall TA. Quantitative glycoproteomics analysis reveals changes in N-glycosylation level associated with pancreatic ductal adenocarcinoma. Journal of Proteome Research. 13: 1293-306. PMID 24471499 DOI: 10.1021/pr4010184  1
2014 Schwarz S, Singh P, Robertson JD, LeRoux M, Skerrett SJ, Goodlett DR, West TE, Mougous JD. VgrG-5 is a Burkholderia type VI secretion system-exported protein required for multinucleated giant cell formation and virulence. Infection and Immunity. 82: 1445-52. PMID 24452686 DOI: 10.1128/IAI.01368-13  0.72
2014 Karan R, DasSarma P, Balcer-Kubiczek E, Weng RR, Liao CC, Goodlett DR, Ng WV, Dassarma S. Bioengineering radioresistance by overproduction of RPA, a mammalian-type single-stranded DNA-binding protein, in a halophilic archaeon. Applied Microbiology and Biotechnology. 98: 1737-47. PMID 24292079 DOI: 10.1007/s00253-013-5368-x  1
2014 Thaipisuttikul I, Hittle LE, Chandra R, Zangari D, Dixon CL, Garrett TA, Rasko DA, Dasgupta N, Moskowitz SM, Malmström L, Goodlett DR, Miller SI, Bishop RE, Ernst RK. A divergent Pseudomonas aeruginosa palmitoyltransferase essential for cystic fibrosis-specific lipid A. Molecular Microbiology. 91: 158-74. PMID 24283944 DOI: 10.1111/mmi.12451  1
2014 Chapman JD, Goodlett DR, Masselon CD. Multiplexed and data-independent tandem mass spectrometry for global proteome profiling. Mass Spectrometry Reviews. 33: 452-70. PMID 24281846 DOI: 10.1002/mas.21400  1
2014 Nguyen EV, Gharib SA, Crothers K, Chow YH, Park DR, Goodlett DR, Schnapp LM. Proteomic landscape of bronchoalveolar lavage fluid in human immunodeficiency virus infection. American Journal of Physiology. Lung Cellular and Molecular Physiology. 306: L35-42. PMID 24213920 DOI: 10.1152/ajplung.00140.2013  0.36
2013 Timmins-Schiffman E, Nunn BL, Goodlett DR, Roberts SB. Shotgun proteomics as a viable approach for biological discovery in the Pacific oyster. Conservation Physiology. 1: cot009. PMID 27293593 DOI: 10.1093/conphys/cot009  0.76
2013 Nunn BL, Faux JF, Hippmann AA, Maldonado MT, Harvey HR, Goodlett DR, Boyd PW, Strzepek RF. Diatom proteomics reveals unique acclimation strategies to mitigate Fe limitation. Plos One. 8: e75653. PMID 24146769 DOI: 10.1371/journal.pone.0075653  1
2013 Weng RR, Chu LJ, Shu HW, Wu TH, Chen MC, Chang Y, Tsai YS, Wilson MC, Tsay YG, Goodlett DR, Ng WV. Large precursor tolerance database search - a simple approach for estimation of the amount of spectra with precursor mass shifts in proteomic data. Journal of Proteomics. 91: 375-84. PMID 23933159 DOI: 10.1016/j.jprot.2013.07.030  1
2013 Mattes TE, Nunn BL, Marshall KT, Proskurowski G, Kelley DS, Kawka OE, Goodlett DR, Hansell DA, Morris RM. Sulfur oxidizers dominate carbon fixation at a biogeochemical hot spot in the dark ocean. The Isme Journal. 7: 2349-60. PMID 23842654 DOI: 10.1038/ismej.2013.113  1
2013 Singh P, Nakatani E, Goodlett DR, Catalano CE. A pseudo-atomic model for the capsid shell of bacteriophage lambda using chemical cross-linking/mass spectrometry and molecular modeling Journal of Molecular Biology. 425: 3378-3388. PMID 23811054 DOI: 10.1016/j.jmb.2013.06.026  1
2013 Nguyen EV, Gharib SA, Palazzo SJ, Chow YH, Goodlett DR, Schnapp LM. Proteomic profiling of bronchoalveolar lavage fluid in critically ill patients with ventilator-associated pneumonia. Plos One. 8: e58782. PMID 23505561 DOI: 10.1371/journal.pone.0058782  0.36
2013 Chapman JD, Gagné JP, Poirier GG, Goodlett DR. Mapping PARP-1 auto-ADP-ribosylation sites by liquid chromatography-tandem mass spectrometry. Journal of Proteome Research. 12: 1868-80. PMID 23438649 DOI: 10.1021/pr301219h  1
2013 Jung S, Smith JJ, von Haller PD, Dilworth DJ, Sitko KA, Miller LR, Saleem RA, Goodlett DR, Aitchison JD. Global analysis of condition-specific subcellular protein distribution and abundance. Molecular & Cellular Proteomics : McP. 12: 1421-35. PMID 23349476 DOI: 10.1074/mcp.O112.019166  1
2013 Gong Y, Gallis BM, Goodlett DR, Yang Y, Lu H, Lacoste E, Lai H, Sasaki T. Effects of transferrin conjugates of artemisinin and artemisinin dimer on breast cancer cell lines. Anticancer Research. 33: 123-32. PMID 23267137  0.6
2012 Ryu S, Goodlett DR, Noble WS, Minin VN. A statistical approach to peptide identification from clustered tandem mass spectrometry data. Proceedings. Ieee International Conference On Bioinformatics and Biomedicine. 648-653. PMID 23828149 DOI: 10.1109/BIBMW.2012.6470214  1
2012 Lin X, Cook TJ, Zabetian CP, Leverenz JB, Peskind ER, Hu SC, Cain KC, Pan C, Edgar JS, Goodlett DR, Racette BA, Checkoway H, Montine TJ, Shi M, Zhang J. DJ-1 isoforms in whole blood as potential biomarkers of Parkinson disease. Scientific Reports. 2: 954. PMID 23233873 DOI: 10.1038/srep00954  1
2012 Zhao C, Gao Q, Roberts AG, Shaffer SA, Doneanu CE, Xue S, Goodlett DR, Nelson SD, Atkins WM. Cross-linking mass spectrometry and mutagenesis confirm the functional importance of surface interactions between CYP3A4 and holo/apo cytochrome b(5). Biochemistry. 51: 9488-500. PMID 23150942 DOI: 10.1021/bi301069r  1
2012 Goo YA, Cain K, Jarrett M, Smith L, Voss J, Tolentino E, Tsuji J, Tsai YS, Panchaud A, Goodlett DR, Shulman RJ, Heitkemper M. Urinary proteome analysis of irritable bowel syndrome (IBS) symptom subgroups. Journal of Proteome Research. 11: 5650-62. PMID 22998556 DOI: 10.1021/pr3004437  1
2012 Rudra D, deRoos P, Chaudhry A, Niec RE, Arvey A, Samstein RM, Leslie C, Shaffer SA, Goodlett DR, Rudensky AY. Transcription factor Foxp3 and its protein partners form a complex regulatory network. Nature Immunology. 13: 1010-9. PMID 22922362 DOI: 10.1038/ni.2402  1
2012 Foss EJ, Radulovic D, Stirewalt DL, Radich J, Sala-Torra O, Pogosova-Agadjanyan EL, Hengel SM, Loeb KR, Deeg HJ, Meshinchi S, Goodlett DR, Bedalov A. Proteomic classification of acute leukemias by alignment-based quantitation of LC-MS/MS data sets. Journal of Proteome Research. 11: 5005-10. PMID 22900933 DOI: 10.1021/pr300567r  1
2012 Yoon SH, Huang Y, Edgar JS, Ting YS, Heron SR, Kao Y, Li Y, Masselon CD, Ernst RK, Goodlett DR. Surface acoustic wave nebulization facilitating lipid mass spectrometric analysis. Analytical Chemistry. 84: 6530-7. PMID 22742654 DOI: 10.1021/ac300807p  1
2012 Moore EK, Nunn BL, Goodlett DR, Harvey HR. Identifying and tracking proteins through the marine water column: insights into the inputs and preservation mechanisms of protein in sediments. Geochimica Et Cosmochimica Acta. 83: 324-359. PMID 22711915 DOI: 10.1016/j.gca.2012.01.002  1
2012 Xing J, Kirby BJ, Whittington D, Wan Y, Goodlett DR. Evaluation of P450 inhibition and induction by artemisinin antimalarials in human liver microsomes and primary human hepatocytes. Drug Metabolism and Disposition: the Biological Fate of Chemicals. 40: 1757-64. PMID 22679214 DOI: 10.1124/dmd.112.045765  1
2012 Karadzic I, Maupin-Furlow J, Humbard M, Prunetti L, Singh P, Goodlett DR. Chemical cross-linking, mass spectrometry, and in silico modeling of proteasomal 20S core particles of the haloarchaeon Haloferax volcanii. Proteomics. 12: 1806-14. PMID 22623373 DOI: 10.1002/pmic.201100260  0.72
2012 Harrelson JP, Stamper BD, Chapman JD, Goodlett DR, Nelson SD. Covalent modification and time-dependent inhibition of human CYP2E1 by the meta-isomer of acetaminophen. Drug Metabolism and Disposition: the Biological Fate of Chemicals. 40: 1460-5. PMID 22613176 DOI: 10.1124/dmd.112.045492  1
2012 Russell AB, Singh P, Brittnacher M, Bui NK, Hood RD, Carl MA, Agnello DM, Schwarz S, Goodlett DR, Vollmer W, Mougous JD. A widespread bacterial type VI secretion effector superfamily identified using a heuristic approach. Cell Host & Microbe. 11: 538-49. PMID 22607806 DOI: 10.1016/j.chom.2012.04.007  1
2012 Li Y, Powell DA, Shaffer SA, Rasko DA, Pelletier MR, Leszyk JD, Scott AJ, Masoudi A, Goodlett DR, Wang X, Raetz CR, Ernst RK. LPS remodeling is an evolved survival strategy for bacteria. Proceedings of the National Academy of Sciences of the United States of America. 109: 8716-21. PMID 22586119 DOI: 10.1073/pnas.1202908109  1
2012 Hengel SM, Goodlett DR. A Review of Tandem Mass Spectrometry Characterization of Adenosine Diphosphate-Ribosylated Peptides. International Journal of Mass Spectrometry. 312: 114-121. PMID 22563295 DOI: 10.1016/j.ijms.2011.06.003  1
2012 Icenogle LM, Hengel SM, Coye LH, Streifel A, Collins CM, Goodlett DR, Moseley SL. Molecular and biological characterization of Streptococcal SpyA-mediated ADP-ribosylation of intermediate filament protein vimentin. The Journal of Biological Chemistry. 287: 21481-91. PMID 22549780 DOI: 10.1074/jbc.M112.370791  1
2012 Huang Y, Yoon SH, Heron SR, Masselon CD, Edgar JS, Ture?ek F, Goodlett DR. Surface acoustic wave nebulization produces ions with lower internal energy than electrospray ionization. Journal of the American Society For Mass Spectrometry. 23: 1062-70. PMID 22476889 DOI: 10.1007/s13361-012-0352-8  1
2012 Pan S, Chen R, Brand RE, Hawley S, Tamura Y, Gafken PR, Milless BP, Goodlett DR, Rush J, Brentnall TA. Multiplex targeted proteomic assay for biomarker detection in plasma: a pancreatic cancer biomarker case study. Journal of Proteome Research. 11: 1937-48. PMID 22316387 DOI: 10.1021/pr201117w  1
2012 Liu X, Sirotkin Y, Shen Y, Anderson G, Tsai YS, Ting YS, Goodlett DR, Smith RD, Bafna V, Pevzner PA. Protein identification using top-down. Molecular & Cellular Proteomics : McP. 11: M111.008524. PMID 22027200 DOI: 10.1074/mcp.M111.008524  1
2011 Acosta-Martin AE, Panchaud A, Chwastyniak M, Dupont A, Juthier F, Gautier C, Jude B, Amouyel P, Goodlett DR, Pinet F. Quantitative mass spectrometry analysis using PAcIFIC for the identification of plasma diagnostic biomarkers for abdominal aortic aneurysm. Plos One. 6: e28698. PMID 22163325 DOI: 10.1371/journal.pone.0028698  1
2011 Hengel SM, Murray E, Langdon S, Hayward L, O'Donoghue J, Panchaud A, Hupp T, Goodlett DR. Data-independent proteomic screen identifies novel tamoxifen agonist that mediates drug resistance. Journal of Proteome Research. 10: 4567-78. PMID 21936522 DOI: 10.1021/pr2004117  1
2011 Foss EJ, Radulovic D, Shaffer SA, Goodlett DR, Kruglyak L, Bedalov A. Genetic variation shapes protein networks mainly through non-transcriptional mechanisms. Plos Biology. 9: e1001144. PMID 21909241 DOI: 10.1371/journal.pbio.1001144  1
2011 Gharib SA, Nguyen EV, Lai Y, Plampin JD, Goodlett DR, Hallstrand TS. Induced sputum proteome in healthy subjects and asthmatic patients. The Journal of Allergy and Clinical Immunology. 128: 1176-1184.e6. PMID 21906793 DOI: 10.1016/j.jaci.2011.07.053  0.36
2011 Shi M, Sui YT, Peskind ER, Li G, Hwang H, Devic I, Ginghina C, Edgar JS, Pan C, Goodlett DR, Furay AR, Gonzalez-Cuyar LF, Zhang J. Salivary tau species are potential biomarkers of Alzheimer's disease. Journal of Alzheimer's Disease : Jad. 27: 299-305. PMID 21841250 DOI: 10.3233/JAD-2011-110731  1
2011 Drew K, Winters P, Butterfoss GL, Berstis V, Uplinger K, Armstrong J, Riffle M, Schweighofer E, Bovermann B, Goodlett DR, Davis TN, Shasha D, Malmström L, Bonneau R. The Proteome Folding Project: proteome-scale prediction of structure and function. Genome Research. 21: 1981-94. PMID 21824995 DOI: 10.1101/gr.121475.111  1
2011 Chu LJ, Yang H, Shih P, Kao Y, Tsai YS, Chen J, Huang G, Weng RR, Ting YS, Fang X, von Haller PD, Goodlett DR, Ng WV. Metabolic capabilities and systems fluctuations in Haloarcula marismortui revealed by integrative genomics and proteomics analyses. Journal of Proteome Research. 10: 3261-73. PMID 21598921 DOI: 10.1021/pr200290x  1
2011 Thatcher JE, Buttrick B, Shaffer SA, Shimshoni JA, Goodlett DR, Nelson WL, Isoherranen N. Substrate specificity and ligand interactions of CYP26A1, the human liver retinoic acid hydroxylase. Molecular Pharmacology. 80: 228-39. PMID 21521770 DOI: 10.1124/mol.111.072413  1
2011 Ting YS, Shaffer SA, Jones JW, Ng WV, Ernst RK, Goodlett DR. Automated lipid A structure assignment from hierarchical tandem mass spectrometry data. Journal of the American Society For Mass Spectrometry. 22: 856-66. PMID 21472520 DOI: 10.1007/s13361-010-0055-y  1
2011 Yu L, Tan Y, Tsai Y, Goodlett DR, Polfer NC. On the relevance of peptide sequence permutations in shotgun proteomics studies. Journal of Proteome Research. 10: 2409-16. PMID 21413817 DOI: 10.1021/pr101235w  1
2011 Devic I, Hwang H, Edgar JS, Izutsu K, Presland R, Pan C, Goodlett DR, Wang Y, Armaly J, Tumas V, Zabetian CP, Leverenz JB, Shi M, Zhang J. Salivary α-synuclein and DJ-1: potential biomarkers for Parkinson's disease. Brain : a Journal of Neurology. 134: e178. PMID 21349902 DOI: 10.1093/brain/awr015  1
2011 Panchaud A, Jung S, Shaffer SA, Aitchison JD, Goodlett DR. Faster, quantitative, and accurate precursor acquisition independent from ion count. Analytical Chemistry. 83: 2250-7. PMID 21341720 DOI: 10.1021/ac103079q  1
2011 Mealman TD, Bagai I, Singh P, Goodlett DR, Rensing C, Zhou H, Wysocki VH, McEvoy MM. Interactions between CusF and CusB identified by NMR spectroscopy and chemical cross-linking coupled to mass spectrometry. Biochemistry. 50: 2559-66. PMID 21323389 DOI: 10.1021/bi102012j  1
2011 Fang X, Yoon JG, Li L, Tsai YS, Zheng S, Hood L, Goodlett DR, Foltz G, Lin B. Landscape of the SOX2 protein-protein interactome. Proteomics. 11: 921-34. PMID 21280222 DOI: 10.1002/pmic.201000419  1
2011 Fang X, Yoon JG, Li L, Yu W, Shao J, Hua D, Zheng S, Hood L, Goodlett DR, Foltz G, Lin B. The SOX2 response program in glioblastoma multiforme: an integrated ChIP-seq, expression microarray, and microRNA analysis. Bmc Genomics. 12: 11. PMID 21211035 DOI: 10.1186/1471-2164-12-11  1
2011 Bochet P, Rügheimer F, Guina T, Brooks P, Goodlett D, Clote P, Schwikowski B. Fragmentation-free LC-MS can identify hundreds of proteins. Proteomics. 11: 22-32. PMID 21182191 DOI: 10.1002/pmic.200900765  1
2011 Chu LJ, Chen MC, Setter J, Tsai YS, Yang H, Fang X, Ting YS, Shaffer SA, Taylor GK, von Haller PD, Goodlett DR, Ng WV. New structural proteins of Halobacterium salinarum gas vesicle revealed by comparative proteomics analysis. Journal of Proteome Research. 10: 1170-8. PMID 21158390 DOI: 10.1021/pr1009383  1
2010 Reiner CL, McCullar JS, Kow RL, Le JH, Goodlett DR, Nathanson NM. RACK1 associates with muscarinic receptors and regulates M(2) receptor trafficking. Plos One. 5: e13517. PMID 20976005 DOI: 10.1371/journal.pone.0013517  1
2010 Wilderman PR, Shah MB, Liu T, Li S, Hsu S, Roberts AG, Goodlett DR, Zhang Q, Woods VL, Stout CD, Halpert JR. Plasticity of cytochrome P450 2B4 as investigated by hydrogen-deuterium exchange mass spectrometry and X-ray crystallography. The Journal of Biological Chemistry. 285: 38602-11. PMID 20880847 DOI: 10.1074/jbc.M110.180646  1
2010 Malmström L, Goodlett DR. Protein structure modeling. Methods in Molecular Biology (Clifton, N.J.). 673: 63-72. PMID 20835793 DOI: 10.1007/978-1-60761-842-3_5  0.84
2010 Sanowar S, Singh P, Pfuetzner RA, André I, Zheng H, Spreter T, Strynadka NC, Gonen T, Baker D, Goodlett DR, Miller SI. Interactions of the transmembrane polymeric rings of the Salmonella enterica serovar Typhimurium type III secretion system. Mbio. 1. PMID 20824104 DOI: 10.1128/mBio.00158-10  1
2010 Goo YA, Tsai YS, Liu AY, Goodlett DR, Yang CC. Urinary proteomics evaluation in interstitial cystitis/painful bladder syndrome: a pilot study. International Braz J Urol : Official Journal of the Brazilian Society of Urology. 36: 464-78; discussion 4. PMID 20815953  0.96
2010 McMillan DG, Velasquez I, Nunn BL, Goodlett DR, Hunter KA, Lamont I, Sander SG, Cook GM. Acquisition of iron by alkaliphilic bacillus species. Applied and Environmental Microbiology. 76: 6955-61. PMID 20802068 DOI: 10.1128/AEM.01393-10  1
2010 Hengel SM, Icenogle L, Collins C, Goodlett DR. Sequence assignment of ADP-ribosylated peptides is facilitated as peptide length increases. Rapid Communications in Mass Spectrometry : Rcm. 24: 2312-6. PMID 20623715 DOI: 10.1002/rcm.4600  1
2010 Chakrabarti L, Zahra R, Jackson SM, Kazemi-Esfarjani P, Sopher BL, Mason AG, Toneff T, Ryu S, Shaffer S, Kansy JW, Eng J, Merrihew G, MacCoss MJ, Murphy A, Goodlett DR, et al. Mitochondrial dysfunction in NnaD mutant flies and Purkinje cell degeneration mice reveals a role for Nna proteins in neuronal bioenergetics. Neuron. 66: 835-47. PMID 20620870 DOI: 10.1016/j.neuron.2010.05.024  1
2010 Mo F, Mo Q, Chen Y, Goodlett DR, Hood L, Omenn GS, Li S, Lin B. WaveletQuant, an improved quantification software based on wavelet signal threshold de-noising for labeled quantitative proteomic analysis. Bmc Bioinformatics. 11: 219. PMID 20429928 DOI: 10.1186/1471-2105-11-219  1
2010 Goo YA, Goodlett DR. Advances in proteomic prostate cancer biomarker discovery. Journal of Proteomics. 73: 1839-50. PMID 20398807 DOI: 10.1016/j.jprot.2010.04.002  0.96
2010 Heron SR, Wilson R, Shaffer SA, Goodlett DR, Cooper JM. Surface acoustic wave nebulization of peptides as a microfluidic interface for mass spectrometry. Analytical Chemistry. 82: 3985-9. PMID 20364823 DOI: 10.1021/ac100372c  1
2010 McIlwain S, Draghicescu P, Singh P, Goodlett DR, Noble WS. Detecting cross-linked peptides by searching against a database of cross-linked peptide pairs. Journal of Proteome Research. 9: 2488-95. PMID 20349954 DOI: 10.1021/pr901163d  1
2009 Brentnall TA, Pan S, Bronner MP, Crispin DA, Mirzaei H, Cooke K, Tamura Y, Nikolskaya T, Jebailey L, Goodlett DR, McIntosh M, Aebersold R, Rabinovitch PS, Chen R. Proteins That Underlie Neoplastic Progression of Ulcerative Colitis. Proteomics. Clinical Applications. 3: 1326. PMID 20098637  0.96
2009 Pan S, Chen R, Reimel BA, Crispin DA, Mirzaei H, Cooke K, Coleman JF, Lane Z, Bronner MP, Goodlett DR, McIntosh MW, Traverso W, Aebersold R, Brentnall TA. Quantitative proteomics investigation of pancreatic intraepithelial neoplasia. Electrophoresis. 30: 1132-44. PMID 19373808 DOI: 10.1002/elps.200800752  1
2009 Pan S, Aebersold R, Chen R, Rush J, Goodlett DR, McIntosh MW, Zhang J, Brentnall TA. Mass spectrometry based targeted protein quantification: methods and applications. Journal of Proteome Research. 8: 787-97. PMID 19105742 DOI: 10.1021/pr800538n  1
2009 Hengel SM, Shaffer SA, Nunn BL, Goodlett DR. Tandem mass spectrometry investigation of ADP-ribosylated kemptide. Journal of the American Society For Mass Spectrometry. 20: 477-83. PMID 19070509 DOI: 10.1016/j.jasms.2008.10.025  1
2007 Prakash A, Piening B, Whiteaker J, Zhang H, Shaffer SA, Martin D, Hohmann L, Cooke K, Olson JM, Hansen S, Flory MR, Lee H, Watts J, Goodlett DR, Aebersold R, et al. Assessing bias in experiment design for large scale mass spectrometry-based quantitative proteomics. Molecular & Cellular Proteomics : McP. 6: 1741-8. PMID 17617667 DOI: 10.1074/mcp.M600470-MCP200  1
2007 Chen R, Brentnall TA, Pan S, Cooke K, Moyes KW, Lane Z, Crispin DA, Goodlett DR, Aebersold R, Bronner MP. Quantitative proteomics analysis reveals that proteins differentially expressed in chronic pancreatitis are also frequently involved in pancreatic cancer. Molecular & Cellular Proteomics : McP. 6: 1331-42. PMID 17496331 DOI: 10.1074/mcp.M700072-MCP200  0.96
2007 Chen R, Pan S, Cooke K, Moyes KW, Bronner MP, Goodlett DR, Aebersold R, Brentnall TA. Comparison of pancreas juice proteins from cancer versus pancreatitis using quantitative proteomic analysis. Pancreas. 34: 70-9. PMID 17198186 DOI: 10.1097/01.mpa.0000240615.20474.fd  0.96
2006 Chen R, Pan S, Yi EC, Donohoe S, Bronner MP, Potter JD, Goodlett DR, Aebersold R, Brentnall TA. Quantitative proteomic profiling of pancreatic cancer juice. Proteomics. 6: 3871-9. PMID 16739137 DOI: 10.1002/pmic.200500702  0.96
2006 Gan RR, Yi EC, Chiu Y, Lee H, Kao YC, Wu TH, Aebersold R, Goodlett DR, Ng WV. Proteome analysis of Halobacterium sp. NRC-1 facilitated by the biomodule analysis tool BMSorter. Molecular & Cellular Proteomics : McP. 5: 987-97. PMID 16497792 DOI: 10.1074/mcp.M500367-MCP200  0.96
2005 Corthals GL, Aebersold R, Goodlett DR. Identification of phosphorylation sites using microimmobilized metal affinity chromatography. Methods in Enzymology. 405: 66-81. PMID 16413311 DOI: 10.1016/S0076-6879(05)05004-4  0.96
2005 Chen SS, Deutsch EW, Yi EC, Li XJ, Goodlett DR, Aebersold R. Improving mass and liquid chromatography based identification of proteins using bayesian scoring. Journal of Proteome Research. 4: 2174-84. PMID 16335964 DOI: 10.1021/pr050251c  1
2005 Chen R, Yi EC, Donohoe S, Pan S, Eng J, Cooke K, Crispin DA, Lane Z, Goodlett DR, Bronner MP, Aebersold R, Brentnall TA. Pancreatic cancer proteome: the proteins that underlie invasion, metastasis, and immunologic escape. Gastroenterology. 129: 1187-97. PMID 16230073 DOI: 10.1053/j.gastro.2005.08.001  0.96
2005 Zhang J, Goodlett DR, Quinn JF, Peskind E, Kaye JA, Zhou Y, Pan C, Yi E, Eng J, Wang Q, Aebersold RH, Montine TJ. Quantitative proteomics of cerebrospinal fluid from patients with Alzheimer disease. Journal of Alzheimer's Disease : Jad. 7: 125-33; discussion 1. PMID 15851850  1
2005 Yi EC, Li XJ, Cooke K, Lee H, Raught B, Page A, Aneliunas V, Hieter P, Goodlett DR, Aebersold R. Increased quantitative proteome coverage with (13)C/(12)C-based, acid-cleavable isotope-coded affinity tag reagent and modified data acquisition scheme. Proteomics. 5: 380-7. PMID 15648049 DOI: 10.1002/pmic.200400970  1
2005 Zhang J, Goodlett DR, Peskind ER, Quinn JF, Zhou Y, Wang Q, Pan C, Yi E, Eng J, Aebersold RH, Montine TJ. Quantitative proteomic analysis of age-related changes in human cerebrospinal fluid. Neurobiology of Aging. 26: 207-27. PMID 15582749 DOI: 10.1016/j.neurobiolaging.2004.03.012  0.8
2004 Marelli M, Smith JJ, Jung S, Yi E, Nesvizhskii AI, Christmas RH, Saleem RA, Tam YY, Fagarasanu A, Goodlett DR, Aebersold R, Rachubinski RA, Aitchison JD. Quantitative mass spectrometry reveals a role for the GTPase Rho1p in actin organization on the peroxisome membrane. The Journal of Cell Biology. 167: 1099-112. PMID 15596542 DOI: 10.1083/jcb.200404119  1
2004 Wollscheid B, von Haller PD, Yi E, Donohoe S, Vaughn K, Keller A, Nesvizhskii AI, Eng J, Li XJ, Goodlett DR, Aebersold R, Watts JD. Lipid raft proteins and their identification in T lymphocytes. Sub-Cellular Biochemistry. 37: 121-52. PMID 15376619  1
2004 Yan W, Lee H, Yi EC, Reiss D, Shannon P, Kwieciszewski BK, Coito C, Li XJ, Keller A, Eng J, Galitski T, Goodlett DR, Aebersold R, Katze MG. System-based proteomic analysis of the interferon response in human liver cells. Genome Biology. 5: R54. PMID 15287976 DOI: 10.1186/gb-2004-5-8-r54  0.96
2004 Zhou Y, Gu G, Goodlett DR, Zhang T, Pan C, Montine TJ, Montine KS, Aebersold RH, Zhang J. Analysis of alpha-synuclein-associated proteins by quantitative proteomics. The Journal of Biological Chemistry. 279: 39155-64. PMID 15234983 DOI: 10.1074/jbc.M405456200  0.76
2004 Lee H, Yi EC, Wen B, Reily TP, Pohl L, Nelson S, Aebersold R, Goodlett DR. Optimization of reversed-phase microcapillary liquid chromatography for quantitative proteomics. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 803: 101-10. PMID 15026003 DOI: 10.1016/j.jchromb.2003.09.005  0.96
2004 Hardwidge PR, Rodriguez-Escudero I, Goode D, Donohoe S, Eng J, Goodlett DR, Aebersold R, Finlay BB. Proteomic analysis of the intestinal epithelial cell response to enteropathogenic Escherichia coli. The Journal of Biological Chemistry. 279: 20127-36. PMID 14988394 DOI: 10.1074/jbc.M401228200  1
2004 MacKay VL, Li X, Flory MR, Turcott E, Law GL, Serikawa KA, Xu XL, Lee H, Goodlett DR, Aebersold R, Zhao LP, Morris DR. Gene expression analyzed by high-resolution state array analysis and quantitative proteomics: response of yeast to mating pheromone. Molecular & Cellular Proteomics : McP. 3: 478-89. PMID 14766929 DOI: 10.1074/mcp.M300129-MCP200  1
2004 Martin DB, Gifford DR, Wright ME, Keller A, Yi E, Goodlett DR, Aebersold R, Nelson PS. Quantitative proteomic analysis of proteins released by neoplastic prostate epithelium. Cancer Research. 64: 347-55. PMID 14729644 DOI: 10.1158/0008-5472.CAN-03-2062  1
2003 Yi EC, Lee H, Aebersold R, Goodlett DR. A microcapillary trap cartridge-microcapillary high-performance liquid chromatography electrospray ionization emitter device capable of peptide tandem mass spectrometry at the attomole level on an ion trap mass spectrometer with automated routine operation. Rapid Communications in Mass Spectrometry : Rcm. 17: 2093-8. PMID 12955739 DOI: 10.1002/rcm.1150  0.96
2003 Goo YA, Yi EC, Baliga NS, Tao WA, Pan M, Aebersold R, Goodlett DR, Hood L, Ng WV. Proteomic analysis of an extreme halophilic archaeon, Halobacterium sp. NRC-1. Molecular & Cellular Proteomics : McP. 2: 506-24. PMID 12872007 DOI: 10.1074/mcp.M300044-MCP200  1
2003 Guina T, Wu M, Miller SI, Purvine SO, Yi EC, Eng J, Goodlett DR, Aebersold R, Ernst RK, Lee KA. Proteomic analysis of Pseudomonas aeruginosa grown under magnesium limitation. Journal of the American Society For Mass Spectrometry. 14: 742-51. PMID 12837596 DOI: 10.1016/S1044-0305(03)00133-8  0.96
2003 Shiio Y, Eisenman RN, Yi EC, Donohoe S, Goodlett DR, Aebersold R. Quantitative proteomic analysis of chromatin-associated factors. Journal of the American Society For Mass Spectrometry. 14: 696-703. PMID 12837591 DOI: 10.1016/S1044-0305(03)00204-6  0.96
2003 von Haller PD, Yi E, Donohoe S, Vaughn K, Keller A, Nesvizhskii AI, Eng J, Li XJ, Goodlett DR, Aebersold R, Watts JD. The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: II. Evaluation of tandem mass spectrometry methodologies for large-scale protein analysis, and the application of statistical tools for data analysis and interpretation. Molecular & Cellular Proteomics : McP. 2: 428-42. PMID 12832459 DOI: 10.1074/mcp.M300041-MCP200  1
2003 von Haller PD, Yi E, Donohoe S, Vaughn K, Keller A, Nesvizhskii AI, Eng J, Li XJ, Goodlett DR, Aebersold R, Watts JD. The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: I. Statistically annotated datasets for peptide sequences and proteins identified via the application of ICAT and tandem mass spectrometry to proteins copurifying with T cell lipid rafts. Molecular & Cellular Proteomics : McP. 2: 426-7. PMID 12832456 DOI: 10.1074/mcp.D300002-MCP200  1
2003 Guina T, Purvine SO, Yi EC, Eng J, Goodlett DR, Aebersold R, Miller SI. Quantitative proteomic analysis indicates increased synthesis of a quinolone by Pseudomonas aeruginosa isolates from cystic fibrosis airways. Proceedings of the National Academy of Sciences of the United States of America. 100: 2771-6. PMID 12601166 DOI: 10.1073/pnas.0435846100  0.96
2003 Ranish JA, Yi EC, Leslie DM, Purvine SO, Goodlett DR, Eng J, Aebersold R. The study of macromolecular complexes by quantitative proteomics. Nature Genetics. 33: 349-55. PMID 12590263 DOI: 10.1038/ng1101  0.96
2002 Baliga NS, Pan M, Goo YA, Yi EC, Goodlett DR, Dimitrov K, Shannon P, Aebersold R, Ng WV, Hood L. Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach. Proceedings of the National Academy of Sciences of the United States of America. 99: 14913-8. PMID 12403819 DOI: 10.1073/pnas.192558999  0.96
2002 Shiio Y, Donohoe S, Yi EC, Goodlett DR, Aebersold R, Eisenman RN. Quantitative proteomic analysis of Myc oncoprotein function. The Embo Journal. 21: 5088-96. PMID 12356725  0.96
2002 Yi EC, Marelli M, Lee H, Purvine SO, Aebersold R, Aitchison JD, Goodlett DR. Approaching complete peroxisome characterization by gas-phase fractionation. Electrophoresis. 23: 3205-16. PMID 12298092 DOI: 10.1002/1522-2683(200209)23:18<3205::AID-ELPS3205>3.0.CO;2-Y  0.96
2002 Dramsi S, Scheid MP, Maiti A, Hojabrpour P, Chen X, Schubert K, Goodlett DR, Aebersold R, Duronio V. Identification of a novel phosphorylation site, Ser-170, as a regulator of bad pro-apoptotic activity. The Journal of Biological Chemistry. 277: 6399-405. PMID 11717309 DOI: 10.1074/jbc.M109990200  0.96
2001 Griffin TJ, Goodlett DR, Aebersold R. Advances in proteome analysis by mass spectrometry. Current Opinion in Biotechnology. 12: 607-12. PMID 11849943 DOI: 10.1016/S0958-1669(01)00268-3  1
2001 Aebersold R, Goodlett DR. Mass spectrometry in proteomics. Chemical Reviews. 101: 269-95. PMID 11712248  0.96
2001 von Haller PD, Donohoe S, Goodlett DR, Aebersold R, Watts JD. Mass spectrometric characterization of proteins extracted from Jurkat T cell detergent-resistant membrane domains. Proteomics. 1: 1010-21. PMID 11683502 DOI: 10.1002/1615-9861(200108)1:8<1010::AID-PROT1010>3.0.CO;2-L  0.96
2001 Goodlett DR, Keller A, Watts JD, Newitt R, Yi EC, Purvine S, Eng JK, von Haller P, Aebersold R, Kolker E. Differential stable isotope labeling of peptides for quantitation and de novo sequence derivation. Rapid Communications in Mass Spectrometry : Rcm. 15: 1214-21. PMID 11445905 DOI: 10.1002/rcm.362  0.96
2001 Ideker T, Thorsson V, Ranish JA, Christmas R, Buhler J, Eng JK, Bumgarner R, Goodlett DR, Aebersold R, Hood L. Integrated genomic and proteomic analyses of a systematically perturbed metabolic network. Science (New York, N.Y.). 292: 929-34. PMID 11340206 DOI: 10.1126/science.292.5518.929  1
2000 Katze MG, Kwieciszewski B, Goodlett DR, Blakely CM, Neddermann P, Tan SL, Aebersold R. Ser2194 is a highly conserved major phosphorylation site of the hepatitis c virus nonstructural protein NS5A Virology. 278: 501-513. PMID 11118372 DOI: 10.1006/viro.2000.0662  1
2000 Heller M, Goodlett DR, Watts JD, Aebersold R. A comprehensive characterization of the T-cell antigen receptor complex composition by microcapillary liquid chromatography-tandem mass spectrometry. Electrophoresis. 21: 2180-95. PMID 10892729 DOI: 10.1002/1522-2683(20000601)21:11<2180::AID-ELPS2180>3.0.CO;2-#  0.96
2000 Goodlett DR, Bruce JE, Anderson GA, Rist B, Pasa-Tolic L, Fiehn O, Smith RD, Aebersold R. Protein identification with a single accurate mass of a cysteine- containing peptide and constrained database searching Analytical Chemistry. 72: 1112-1118. PMID 10740847 DOI: 10.1021/ac9913210  1
2000 Goodlett DR, Aebersold R, Watts JD. Quantitative in vitro kinase reaction as a guide for phosphoprotein analysis by mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 14: 344-8. PMID 10700036 DOI: 10.1002/(SICI)1097-0231(20000315)14:5<344::AID-RCM866>3.0.CO;2-W  0.96
1999 Gallis B, Corthals GL, Goodlett DR, Ueba H, Kim F, Presnell SR, Figeys D, Harrison DG, Berk BC, Aebersold R, Corson MA. Identification of flow-dependent endothelial nitric-oxide synthase phosphorylation sites by mass spectrometry and regulation of phosphorylation and nitric oxide production by the phosphatidylinositol 3-kinase inhibitor LY294002 Journal of Biological Chemistry. 274: 30101-30108. PMID 10514497 DOI: 10.1074/jbc.274.42.30101  1
1999 Figeys D. Data-dependent modulation of solid-phase extraction capillary electrophoresis for the analysis of complex peptide and phosphopeptide mixtures by tandem mass spectrometry: Application to endothelial nitric oxide synthase Analytical Chemistry. 71: 2279-2287. PMID 10405598  1
1999 Susin SA, Lorenzo HK, Zamzami N, Marzo I, Snow BE, Brothers GM, Mangion J, Jacotot E, Costantini P, Loeffler M, Larochette N, Goodlett DR, Aebersold R, Siderovski DP, Penninger JM, et al. Molecular characterization of mitochondrial apoptosis-inducing factor. Nature. 397: 441-6. PMID 9989411 DOI: 10.1038/17135  0.96
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