David Robinson Goodlett, MS, PhD - Publications

2000-2004 Proteomics Institute for Systems Biology, Seattle, Seattle, WA, United States 
 2004-2012 Medicinal Chemistry University of Washington School of Pharmacy 
 2013-2019 Pharmaceutical Sciences University of Maryland School of Pharmacy 
 2019-2020 Microbial Pathogenesis University of Maryland School of Dentistry 
 2020- Biochemistry and Microbiology University of Victoria, Victoria, British Columbia, Canada 
structure function relationships in proteins and lipids i

257 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Yang H, Jackson SN, Woods AS, Goodlett DR, Ernst RK, Scott AJ. Streamlined Analysis of Cardiolipins in Prokaryotic and Eukaryotic Samples Using Norharmane Matrix by MALDI-MSI. Journal of the American Society For Mass Spectrometry. PMID 32924474 DOI: 10.1021/Jasms.0C00201  0.77
2020 Yang H, Chandler CE, Jackson SN, Woods AS, Goodlett DR, Ernst RK, Scott AJ. On-tissue derivatization of lipopolysaccharide for detection of lipid A using MALDI-MSI. Analytical Chemistry. PMID 32902263 DOI: 10.1021/Acs.Analchem.0C02566  0.768
2020 Chandler CE, Harberts EM, Pelletier MR, Thaipisuttikul I, Jones JW, Hajjar AM, Sahl JW, Goodlett DR, Pride AC, Rasko DA, Trent MS, Bishop RE, Ernst RK. Early evolutionary loss of the lipid A modifying enzyme PagP resulting in innate immune evasion in . Proceedings of the National Academy of Sciences of the United States of America. PMID 32868431 DOI: 10.1073/Pnas.1917504117  0.726
2020 Faktor J, Grasso G, Zavadil F, Kurkowiak M, Mayordomo MY, Kote S, Singh A, Ruidong L, O'Neill JR, Muller P, Goodlett D, Vojtesek B, Hupp T. The effects of p53 gene inactivation on mutant proteome expression in a human melanoma cell model. Biochimica Et Biophysica Acta. General Subjects. 129722. PMID 32866596 DOI: 10.1016/J.Bbagen.2020.129722  0.598
2020 Srzentić K, Fornelli L, Tsybin YO, Loo JA, Seckler H, Agar JN, Anderson LC, Bai DL, Beck A, Brodbelt JS, van der Burgt YEM, Chamot-Rooke J, Chatterjee S, Chen Y, Clarke DJ, ... ... Goodlett DR, et al. Interlaboratory Study for Characterizing Monoclonal Antibodies by Top-Down and Middle-Down Mass Spectrometry. Journal of the American Society For Mass Spectrometry. PMID 32812765 DOI: 10.1021/Jasms.0C00036  0.759
2020 Sun D, Böhringer KF, Sorensen M, Nilsson E, Edgar JS, Goodlett DR. Droplet delivery and nebulization system using surface acoustic wave for mass spectrometry. Lab On a Chip. PMID 32760973 DOI: 10.1039/D0Lc00495B  0.653
2020 Ryu SY, Wendt GA, Ernst RK, Goodlett DR. MGMS2: Membrane Glycolipid Mass Spectrum Simulator for polymicrobial samples. Rapid Communications in Mass Spectrometry : Rcm. e8824. PMID 32384576 DOI: 10.1002/Rcm.8824  0.671
2020 Zhou M, Uwugiaren N, Williams SM, Moore RJ, Zhao R, Goodlett D, Dapic I, Paša-Tolić L, Zhu Y. Sensitive Top-Down Proteomics Analysis of a Low Number of Mammalian Cells Using a Nanodroplet Sample Processing Platform. Analytical Chemistry. PMID 32374172 DOI: 10.1021/Acs.Analchem.0C00467  0.396
2020 Harberts E, Liang T, Yoon SH, Opene BN, McFarland MA, Goodlett DR, Ernst RK. TLR4-Independent Effects of LPS Identified Using Longitudinal Serum Proteomics. Journal of Proteome Research. PMID 32037835 DOI: 10.1021/Acs.Jproteome.9B00765  0.779
2019 Urban-Wojciuk Z, Khan MM, Oyler BL, Fåhraeus R, Marek-Trzonkowska N, Nita-Lazar A, Hupp TR, Goodlett DR. The Role of TLRs in Anti-cancer Immunity and Tumor Rejection. Frontiers in Immunology. 10: 2388. PMID 31695691 DOI: 10.3389/Fimmu.2019.02388  0.76
2019 Dapic I, Baljeu‐Neuman L, Uwugiaren N, Kers J, Goodlett DR, Corthals GL. Proteome analysis of tissues by mass spectrometry. Mass Spectrometry Reviews. 38: 403-441. PMID 31390493 DOI: 10.1002/Mas.21598  0.602
2019 Ryu SY, Wendt GA, Chandler CE, Ernst RK, Goodlett DR. Model-based Spectral Library Approach for Bacterial Identification via Membrane Glycolipids. Analytical Chemistry. PMID 31369253 DOI: 10.1021/Acs.Analchem.9B03340  0.701
2019 Kote S, Faktor J, Dapic I, Mayordomo MY, Kocikowski M, Kagansky A, Goodlett D, Vojtesek B, Hupp T, Wilcockson D, Piper R. Analysis of venom sac constituents from the solitary, hunting wasp Cerceris rybyensis. Toxicon : Official Journal of the International Society On Toxinology. PMID 31352010 DOI: 10.1016/J.Toxicon.2019.07.012  0.609
2019 Khan MM, Ernst O, Manes NP, Oyler BL, Fraser IDC, Goodlett DR, Nita-Lazar A. Multi-Omics Strategies Uncover Host-Pathogen Interactions. Acs Infectious Diseases. PMID 30857388 DOI: 10.1021/Acsinfecdis.9B00080  0.777
2019 Khan MM, Chattagul S, Tran BQ, Freiberg JA, Nita-Lazar A, Shirtliff ME, Sermswan RW, Ernst RK, Goodlett DR. Temporal proteomic profiling reveals changes that support Burkholderia biofilms. Pathogens and Disease. PMID 30759239 DOI: 10.1093/Femspd/Ftz005  0.816
2018 Homayounfar N, Khan MM, Ji Y, Khoury ZH, Oates TW, Goodlett DR, Chellaiah M, Masri R. The effect of embryonic origin on the osteoinductive potential of bone allografts. The Journal of Prosthetic Dentistry. PMID 30598313 DOI: 10.1016/J.Prosdent.2018.09.003  0.573
2018 Liang T, Leung LM, Opene B, Fondrie WE, Lee YI, Chandler CE, Yoon SH, Doi Y, Ernst RK, Goodlett DR. Rapid microbial identification and antibiotic resistance detection by mass spectrometric analysis of membrane lipids. Analytical Chemistry. PMID 30571097 DOI: 10.1021/Acs.Analchem.8B02611  0.812
2018 Leung LM, McElheny CL, Gardner FM, Chandler CE, Bowler SL, Mettus RT, Spychala CN, Fowler EL, Opene BNA, Myers RA, Goodlett DR, Doi Y, Ernst RK. A Prospective Study of Complex Isolates and Colistin Susceptibility Monitoring by Mass Spectrometry of Microbial Membrane Glycolipids. Journal of Clinical Microbiology. PMID 30567747 DOI: 10.1128/Jcm.01100-18  0.803
2018 Fondrie WE, Liang T, Oyler BL, Leung LM, Ernst RK, Strickland DK, Goodlett DR. Pathogen Identification Direct From Polymicrobial Specimens Using Membrane Glycolipids. Scientific Reports. 8: 15857. PMID 30367087 DOI: 10.1038/S41598-018-33681-8  0.788
2018 Schneider T, Oyler BL, Yoon SH, Liang T, Yen GS, Kilgour DPA, Nilsson E, Goodlett DR. Rapid Food Product Analysis by Surface Acoustic Wave Nebulization Coupled Mass Spectrometry. Food Analytical Methods. 11: 2447-2454. PMID 30271524 DOI: 10.1007/S12161-018-1232-Z  0.789
2018 Khan MM, Ernst O, Sun J, Fraser IDC, Ernst RK, Goodlett DR, Nita-Lazar A. Mass spectrometry based structural analysis and systems immunoproteomics strategies for deciphering the host response to endotoxin. Journal of Molecular Biology. PMID 29949751 DOI: 10.1016/J.Jmb.2018.06.032  0.785
2018 Bhosale SD, Moulder R, Venäläinen MS, Koskinen JS, Pitkänen N, Juonala MT, Kähönen MAP, Lehtimäki TJ, Viikari JSA, Elo LL, Goodlett DR, Lahesmaa R, Raitakari OT. Serum Proteomic Profiling to Identify Biomarkers of Premature Carotid Atherosclerosis. Scientific Reports. 8: 9209. PMID 29907817 DOI: 10.1038/S41598-018-27265-9  0.339
2018 Awasthi S, Maity T, Oyler BL, Zhang X, Goodlett DR, Guha U. Dataset describing the development, optimization and application of SRM/MRM based targeted proteomics strategy for quantification of potential biomarkers of EGFR TKI sensitivity. Data in Brief. 19: 424-436. PMID 29900338 DOI: 10.1016/J.Dib.2018.04.086  0.778
2018 Mohammad I, Nousiainen K, Bhosale SD, Starskaia I, Moulder R, Rokka A, Cheng F, Mohanasundaram P, Eriksson JE, Goodlett DR, Lähdesmäki H, Chen Z. Quantitative proteomic characterization and comparison of T helper 17 and induced regulatory T cells. Plos Biology. 16: e2004194. PMID 29851958 DOI: 10.1371/Journal.Pbio.2004194  0.368
2018 Oyler BL, Khan MM, Smith DF, Harberts EM, Kilgour DPA, Ernst RK, Cross AS, Goodlett DR. Correction to: Top Down Tandem Mass Spectrometric Analysis of a Chemically Modified Rough-Type Lipopolysaccharide Vaccine Candidate. Journal of the American Society For Mass Spectrometry. PMID 29687418 DOI: 10.1007/S13361-018-1960-8  0.779
2018 Awasthi S, Maity T, Oyler BL, Qi Y, Zhang X, Goodlett DR, Guha U. Quantitative targeted proteomic analysis of potential markers of tyrosine kinase inhibitor (TKI) sensitivity in EGFR mutated lung adenocarcinoma. Journal of Proteomics. PMID 29660496 DOI: 10.1016/J.Jprot.2018.04.005  0.764
2018 Khan MM, Koppenol-Raab M, Kuriakose M, Manes NP, Goodlett DR, Nita-Lazar A. Host-pathogen dynamics through targeted secretome analysis of stimulated macrophages. Journal of Proteomics. PMID 29572161 DOI: 10.1016/J.Jprot.2018.03.016  0.633
2018 Oyler BL, Khan MM, Smith DF, Harberts EM, Kilgour DPA, Ernst RK, Cross AS, Goodlett DR. Top Down Tandem Mass Spectrometric Analysis of a Chemically Modified Rough-Type Lipopolysaccharide Vaccine Candidate. Journal of the American Society For Mass Spectrometry. PMID 29464544 DOI: 10.1007/S13361-018-1897-Y  0.786
2018 Liang T, Schneider T, Yoon SH, Oyler BL, Leung LM, Fondrie WE, Yen G, Huang Y, Ernst RK, Nilsson E, Goodlett DR. Optimized surface acoustic wave nebulization facilitates bacterial phenotyping International Journal of Mass Spectrometry. 427: 65-72. DOI: 10.1016/J.Ijms.2017.09.007  0.79
2017 Crawford MA, Fisher DJ, Leung LM, Lomonaco S, Lascols C, Cannatelli A, Giani T, Rossolini GM, Doi Y, Goodlett DR, Allard MW, Sharma SK, Khan E, Ernst RK, Hughes MA. CXC Chemokines Exhibit Bactericidal Activity against Multidrug-Resistant Gram-Negative Pathogens. Mbio. 8. PMID 29138303 DOI: 10.1128/Mbio.01549-17  0.78
2017 Moulder R, Bhosale SD, Goodlett DR, Lahesmaa R. Analysis of the plasma proteome using iTRAQ and TMT-based Isobaric labeling. Mass Spectrometry Reviews. PMID 29120501 DOI: 10.1002/Mas.21550  0.389
2017 Leung LM, Cooper VS, Rasko DA, Guo Q, Pacey MP, McElheny CL, Mettus RT, Yoon SH, Goodlett DR, Ernst RK, Doi Y. Structural modification of LPS in colistin-resistant, KPC-producing Klebsiella pneumoniae. The Journal of Antimicrobial Chemotherapy. PMID 28961916 DOI: 10.1093/Jac/Dkx234  0.769
2017 Leung LM, Fondrie WE, Doi Y, Johnson JK, Strickland DK, Ernst RK, Goodlett DR. Identification of the ESKAPE pathogens by mass spectrometric analysis of microbial membrane glycolipids. Scientific Reports. 7: 6403. PMID 28743946 DOI: 10.1038/S41598-017-04793-4  0.819
2017 Khan MM, Tran BQ, Jang YJ, Park SH, Fondrie WE, Chowdhury K, Yoon SH, Goodlett DR, Chae SW, Chae HJ, Seo SY, Goo YA. Assessment of the Therapeutic Potential of Persimmon Leaf Extract on Prediabetic Subjects. Molecules and Cells. PMID 28681595 DOI: 10.14348/Molcells.2017.2298  0.797
2017 Bhosale SD, Moulder R, Kouvonen P, Lahesmaa R, Goodlett DR. Mass Spectrometry-Based Serum Proteomics for Biomarker Discovery and Validation. Methods in Molecular Biology (Clifton, N.J.). 1619: 451-466. PMID 28674903 DOI: 10.1007/978-1-4939-7057-5_31  0.372
2017 Lund RJ, Huhtinen K, Salmi J, Rantala J, Nguyen EV, Moulder R, Goodlett DR, Lahesmaa R, Carpén O. DNA methylation and Transcriptome Changes Associated with Cisplatin Resistance in Ovarian Cancer. Scientific Reports. 7: 1469. PMID 28473707 DOI: 10.1038/S41598-017-01624-4  0.709
2017 Nguyen EV, Huhtinen K, Goo YA, Kaipio K, Andersson N, Rantanen V, Hynninen J, Lahesmaa R, Carpen O, Goodlett DR. Hyper-phosphorylation of Sequestosome-1 distinguishes resistance to cisplatin in patient derived high grade serous ovarian cancer cells. Molecular & Cellular Proteomics : McP. PMID 28455291 DOI: 10.1074/Mcp.M116.058321  0.787
2017 Liu YY, Chandler CE, Leung LM, McElheny CL, Mettus RT, Shanks RM, Liu JH, Goodlett DR, Ernst RK, Doi Y. Structural Modification of Lipopolysaccharide Conferred by mcr-1 in Gram-Negative ESKAPE Pathogens. Antimicrobial Agents and Chemotherapy. PMID 28373195 DOI: 10.1128/Aac.00580-17  0.787
2017 Scott AJ, Oyler BL, Goodlett DR, Ernst RK. Lipid A structural modifications in extreme conditions and identification of unique modifying enzymes to define the Toll-like receptor 4 structure-activity relationship. Biochimica Et Biophysica Acta. PMID 28108356 DOI: 10.1016/J.Bbalip.2017.01.004  0.779
2017 Moulder R, Bhosale SD, Lahesmaa R, Goodlett DR. The progress and potential of proteomic biomarkers for type 1 diabetes in children. Expert Review of Proteomics. 14: 31-41. PMID 27997253 DOI: 10.1080/14789450.2017.1265449  0.316
2017 Awasthi S, Zhang X, Maity T, Oyler BL, Goodlett DR, Guha U. Abstract 2203: A SRM/MRM based targeted proteomics strategy for absolute quantification of potential biomarkers of TKI sensitivity in EGFR mutated lung adenocarcinoma Cancer Research. 77: 2203-2203. DOI: 10.1158/1538-7445.Am2017-2203  0.768
2016 Freiberg JA, Le Breton Y, Tran BQ, Scott AJ, Harro JM, Ernst RK, Goo YA, Mongodin EF, Goodlett DR, McIver KS, Shirtliff ME. Global Analysis and Comparison of the Transcriptomes and Proteomes of Group A Streptococcus Biofilms. Msystems. 1. PMID 27933318 DOI: 10.1128/mSystems.00149-16  0.811
2016 Kilgour DP, Hughes S, Kilgour SL, Mackay CL, Palmblad M, Tran BQ, Goo YA, Ernst RK, Clarke DJ, Goodlett DR. Autopiquer - a Robust and Reliable Peak Detection Algorithm for Mass Spectrometry. Journal of the American Society For Mass Spectrometry. PMID 27924495 DOI: 10.1007/S13361-016-1549-Z  0.792
2016 Sharma S, Mishra R, Bigham GE, Wehman B, Khan MM, Xu H, Saha P, Goo YA, Datla SR, Chen L, Tulapurkar ME, Taylor BS, Yang P, Karathanasis SK, Goodlett DR, et al. A Deep Proteome Analysis Identifies the Complete Secretome as the Functional Unit of Human Cardiac Progenitor Cells. Circulation Research. PMID 27908912 DOI: 10.1161/Circresaha.116.309782  0.733
2016 Eshraghi A, Kim J, Walls AC, Ledvina HE, Miller CN, Ramsey KM, Whitney JC, Radey MC, Peterson SB, Ruhland BR, Tran BQ, Goo YA, Goodlett DR, Dove SL, Celli J, et al. Secreted Effectors Encoded within and outside of the Francisella Pathogenicity Island Promote Intramacrophage Growth. Cell Host & Microbe. 20: 573-583. PMID 27832588 DOI: 10.1016/J.Chom.2016.10.008  0.765
2016 Rehman T, Khan MM, Shad MA, Hussain M, Oyler BL, Goo YA, Goodlett DR. Detection of Carbofuran-Protein Adducts in Serum of Occupationally Exposed Pesticide Factory Workers in Pakistan. Chemical Research in Toxicology. PMID 27657490 DOI: 10.1021/Acs.Chemrestox.6B00222  0.816
2016 Scott AJ, Flinders B, Cappell J, Liang T, Pelc RS, Tran B, Kilgour DP, Heeren RM, Goodlett DR, Ernst RK. Norharmane Matrix Enhances Detection of Endotoxin by MALDI-MS for Simultaneous Profiling of Pathogen, Host, and Vector Systems. Pathogens and Disease. PMID 27650574 DOI: 10.1093/Femspd/Ftw097  0.787
2016 Yoon SH, Liang T, Schneider T, Oyler BL, Chandler CE, Ernst RK, Yen GS, Huang Y, Nilsson E, Goodlett DR. Rapid Lipid A Structure Determination via Surface Acoustic Wave Nebulization and Hierarchical Tandem Mass Spectrometry Algorithm. Rapid Communications in Mass Spectrometry : Rcm. PMID 27582344 DOI: 10.1002/Rcm.7728  0.786
2016 Li Y, Yoon SH, Wang X, Ernst RK, Goodlett DR. Structural Derivation of lipid A from Cronobacter sakazakii using Tandem Mass Spectrometry. Rapid Communications in Mass Spectrometry : Rcm. PMID 27502448 DOI: 10.1002/Rcm.7712  0.749
2016 Lee CF, Chavez JD, Garcia-Menendez L, Choi YS, Roe ND, Chiao YA, Edgar JS, Goo YA, Goodlett DR, Bruce JE, Tian R. Normalization of NAD+ Redox Balance as a Therapy for Heart Failure. Circulation. PMID 27489254 DOI: 10.1161/Circulationaha.116.022495  0.729
2016 Hecht AL, Casterline BW, Earley ZM, Goo YA, Goodlett DR, Bubeck Wardenburg J. Strain competition restricts colonization of an enteric pathogen and prevents colitis. Embo Reports. PMID 27432285 DOI: 10.15252/Embr.201642282  0.629
2016 Huang Y, Heron SR, Clark AM, Edgar JS, Yoon SH, Kilgour DP, Turecek F, Aliseda A, Goodlett DR. Surface acoustic wave nebulization device with dual interdigitated transducers improves SAWN-MS performance. Journal of Mass Spectrometry : Jms. 51: 424-429. PMID 27270865 DOI: 10.1002/Jms.3766  0.796
2016 Chapman JD, Edgar JS, Goodlett DR, Goo YA. Use of captive spray ionization to increase throughput of the data-independent acquisition technique PAcIFIC. Rapid Communications in Mass Spectrometry : Rcm. 30: 1101-7. PMID 27060837 DOI: 10.1002/Rcm.7544  0.793
2016 Yen GS, Edgar JS, Yoon SH, Huang Y, Heron SR, Chiu DT, Goodlett DR. Polydimethylsiloxane microchannel coupled to surface acoustic wave nebulization mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 30: 1096-100. PMID 27003047 DOI: 10.1002/Rcm.7531  0.78
2016 Wexler AG, Bao Y, Whitney JC, Bobay LM, Xavier JB, Schofield WB, Barry NA, Russell AB, Tran BQ, Goo YA, Goodlett DR, Ochman H, Mougous JD, Goodman AL. Human symbionts inject and neutralize antibacterial toxins to persist in the gut. Proceedings of the National Academy of Sciences of the United States of America. PMID 26957597 DOI: 10.1073/Pnas.1525637113  0.735
2016 Tripathy S, Chapman JD, Han CY, Hogarth C, Arnold SL, Onken J, Kent T, Goodlett DR, Isoherranen N. All-trans-retinoic acid Enhances Mitochondrial Function in Models of Human Liver. Molecular Pharmacology. PMID 26921399 DOI: 10.1124/Mol.116.103697  0.565
2016 Moulder R, Goo YA, Goodlett DR. Label-Free Quantitation for Clinical Proteomics. Methods in Molecular Biology (Clifton, N.J.). 1410: 65-76. PMID 26867738 DOI: 10.1007/978-1-4939-3524-6_4  0.671
2016 Tran BQ, Barton C, Feng J, Sandjong A, Yoon SH, Awasthi S, Liang T, Khan MM, Kilgour DP, Goodlett DR, Goo YA. Glycosylation characterization of therapeutic mAbs by top- and middle-down mass spectrometry. Data in Brief. 6: 68-76. PMID 26793758 DOI: 10.1016/J.Dib.2015.11.031  0.812
2016 Tran BQ, Goodlett DR, Goo YA. Advances in protein complex analysis by chemical cross-linking coupled with mass spectrometry (CXMS) and bioinformatics. Biochimica Et Biophysica Acta. 1864: 123-9. PMID 26025770 DOI: 10.1016/J.Bbapap.2015.05.015  0.785
2016 Tran BQ, Barton C, Feng J, Sandjong A, Yoon SH, Awasthi S, Liang T, Khan MM, Kilgour DPA, Goodlett DR, Goo YA. Glycosylation characterization of therapeutic mAbs by top- and middle-down mass spectrometry Data in Brief. 6: 68-76. DOI: 10.1016/j.dib.2015.11.031  0.8
2015 Jung S, Danziger SA, Panchaud A, von Haller P, Aitchison JD, Goodlett DR. Systematic Analysis of Yeast Proteome Reveals Peptide Detectability Factors for Mass Spectrometry. Journal of Proteomics & Bioinformatics. 8: 231-239. PMID 26962293 DOI: 10.4172/Jpb.1000374  0.822
2015 Monkkonen L, Edgar JS, Winters D, Heron SR, Mackay CL, Masselon CD, Stokes AA, Langridge-Smith PR, Goodlett DR. Screen-printed digital microfluidics combined with surface acoustic wave nebulization for hydrogen-deuterium exchange measurements. Journal of Chromatography. A. PMID 26826755 DOI: 10.1016/J.Chroma.2015.12.048  0.786
2015 Tran BQ, Barton C, Feng J, Sandjong A, Yoon SH, Awasthi S, Liang T, Khan MM, Kilgour DP, Goodlett DR, Goo YA. Comprehensive glycosylation profiling of IgG and IgG-fusion proteins by top-down MS with multiple fragmentation techniques. Journal of Proteomics. PMID 26485299 DOI: 10.1016/J.Jprot.2015.10.021  0.814
2015 Whitney JC, Quentin D, Sawai S, LeRoux M, Harding BN, Ledvina HE, Tran BQ, Robinson H, Goo YA, Goodlett DR, Raunser S, Mougous JD. An Interbacterial NAD(P)(+) Glycohydrolase Toxin Requires Elongation Factor Tu for Delivery to Target Cells. Cell. 163: 607-19. PMID 26456113 DOI: 10.1016/J.Cell.2015.09.027  0.759
2015 Hittle LE, Powell DA, Jones JW, Tofigh M, Goodlett DR, Moskowitz SM, Ernst RK. Site-specific activity of the acyltransferases HtrB1 and HtrB2 in Pseudomonas aeruginosa lipid A biosynthesis. Pathogens and Disease. PMID 26223882 DOI: 10.1093/Femspd/Ftv053  0.789
2015 Kilgour DPA, Van Orden SL, Tran BQ, Goo YA, Goodlett DR. Producing isotopic distribution models for fully apodized absorption mode FT-MS Analytical Chemistry. 87: 5797-5801. PMID 25938639 DOI: 10.1021/Acs.Analchem.5B01032  0.735
2015 LeRoux M, Kirkpatrick RL, Montauti EI, Tran BQ, Peterson SB, Harding BN, Whitney JC, Russell AB, Traxler B, Goo YA, Goodlett DR, Wiggins PA, Mougous JD. Kin cell lysis is a danger signal that activates antibacterial pathways of Pseudomonas aeruginosa. Elife. 4. PMID 25643398 DOI: 10.7554/Elife.05701  0.723
2015 Moulder R, Bhosale SD, Erkkilä T, Laajala E, Salmi J, Nguyen EV, Kallionpää H, Mykkänen J, Vähä-Mäkilä M, Hyöty H, Veijola R, Ilonen J, Simell T, Toppari J, Knip M, ... Goodlett DR, et al. Serum proteomes distinguish children developing type 1 diabetes in a cohort with HLA-conferred susceptibility. Diabetes. 64: 2265-78. PMID 25616278 DOI: 10.2337/Db14-0983  0.75
2015 LeRoux M, Kirkpatrick RL, Montauti EI, Tran BQ, Peterson SB, Harding BN, Whitney JC, Russell AB, Traxler B, Goo YA, Goodlett DR, Wiggins PA, Mougous JD. Author response: Kin cell lysis is a danger signal that activates antibacterial pathways of Pseudomonas aeruginosa Elife. DOI: 10.7554/Elife.05701.032  0.722
2015 Schvartz D, Bergsten P, Baek KH, De La Rosa AB, Cantley J, Dayon L, Finamore F, Fontana P, Gaudet P, Goo YA, Moulder R, Goodlett D, Johnson JD, Konvalinka A, Mulderm H, et al. The Human Diabetes Proteome Project (HDPP): The 2014 update Translational Proteomics. 8: 1-7. DOI: 10.1016/J.Trprot.2015.03.001  0.585
2014 Canterbury JD, Merrihew GE, MacCoss MJ, Goodlett DR, Shaffer SA. Comparison of data acquisition strategies on quadrupole ion trap instrumentation for shotgun proteomics. Journal of the American Society For Mass Spectrometry. 25: 2048-59. PMID 25261218 DOI: 10.1007/S13361-014-0981-1  0.5
2014 Swiderski K, Shaffer SA, Gallis B, Odom GL, Arnett AL, Scott Edgar J, Baum DM, Chee A, Naim T, Gregorevic P, Murphy KT, Moody J, Goodlett DR, Lynch GS, Chamberlain JS. Phosphorylation within the cysteine-rich region of dystrophin enhances its association with β-dystroglycan and identifies a potential novel therapeutic target for skeletal muscle wasting. Human Molecular Genetics. 23: 6697-711. PMID 25082828 DOI: 10.1093/Hmg/Ddu388  0.743
2014 Russell AB, Wexler AG, Harding BN, Whitney JC, Bohn AJ, Goo YA, Tran BQ, Barry NA, Zheng H, Peterson SB, Chou S, Gonen T, Goodlett DR, Goodman AL, Mougous JD. A type VI secretion-related pathway in Bacteroidetes mediates interbacterial antagonism. Cell Host & Microbe. 16: 227-36. PMID 25070807 DOI: 10.1016/J.Chom.2014.07.007  0.757
2014 Nguyen EV, Gharib SA, Schnapp LM, Goodlett DR. Shotgun MS proteomic analysis of bronchoalveolar lavage fluid in normal subjects. Proteomics. Clinical Applications. 8: 737-47. PMID 24616423 DOI: 10.1002/Prca.201300018  0.764
2014 Cary GA, Yoon SH, Torres CG, Wang K, Hays M, Ludlow C, Goodlett DR, Dudley AM. Identification and characterization of a drug-sensitive strain enables puromycin-based translational assays in Saccharomyces cerevisiae. Yeast (Chichester, England). 31: 167-78. PMID 24610064 DOI: 10.1002/Yea.3007  0.594
2014 Whitney JC, Beck CM, Goo YA, Russell AB, Harding BN, De Leon JA, Cunningham DA, Tran BQ, Low DA, Goodlett DR, Hayes CS, Mougous JD. Genetically distinct pathways guide effector export through the type VI secretion system. Molecular Microbiology. 92: 529-42. PMID 24589350 DOI: 10.1111/Mmi.12571  0.759
2014 Pan S, Chen R, Tamura Y, Crispin DA, Lai LA, May DH, McIntosh MW, Goodlett DR, Brentnall TA. Quantitative glycoproteomics analysis reveals changes in N-glycosylation level associated with pancreatic ductal adenocarcinoma. Journal of Proteome Research. 13: 1293-306. PMID 24471499 DOI: 10.1021/Pr4010184  0.706
2014 Schwarz S, Singh P, Robertson JD, LeRoux M, Skerrett SJ, Goodlett DR, West TE, Mougous JD. VgrG-5 is a Burkholderia type VI secretion system-exported protein required for multinucleated giant cell formation and virulence. Infection and Immunity. 82: 1445-52. PMID 24452686 DOI: 10.1128/Iai.01368-13  0.656
2014 Thaipisuttikul I, Hittle LE, Chandra R, Zangari D, Dixon CL, Garrett TA, Rasko DA, Dasgupta N, Moskowitz SM, Malmström L, Goodlett DR, Miller SI, Bishop RE, Ernst RK. A divergent Pseudomonas aeruginosa palmitoyltransferase essential for cystic fibrosis-specific lipid A. Molecular Microbiology. 91: 158-74. PMID 24283944 DOI: 10.1111/Mmi.12451  0.777
2014 Chapman JD, Goodlett DR, Masselon CD. Multiplexed and data-independent tandem mass spectrometry for global proteome profiling. Mass Spectrometry Reviews. 33: 452-70. PMID 24281846 DOI: 10.1002/Mas.21400  0.687
2014 Nguyen EV, Gharib SA, Crothers K, Chow YH, Park DR, Goodlett DR, Schnapp LM. Proteomic landscape of bronchoalveolar lavage fluid in human immunodeficiency virus infection. American Journal of Physiology. Lung Cellular and Molecular Physiology. 306: L35-42. PMID 24213920 DOI: 10.1152/Ajplung.00140.2013  0.688
2014 Moore E, Harvey H, Faux J, Goodlett D, Nunn B. Electrophoretic Extraction and Proteomic Characterization of Proteins Buried in Marine Sediments Chromatography. 1: 176-193. DOI: 10.3390/Chromatography1040176  0.808
2014 Moore EK, Harvey HR, Faux JF, Goodlett DR, Nunn BL. Protein recycling in Bering Sea algal incubations Marine Ecology Progress Series. 515: 45-59. DOI: 10.3354/Meps10936  0.693
2014 Canterbury JD, Merrihew GE, MacCoss MJ, Goodlett DR, Shaffer SA. Comparison of data acquisition strategies on quadrupole ion trap instrumentation for shotgun proteomics Journal of the American Society For Mass Spectrometry. 25: 2048-2059. DOI: 10.1007/s13361-014-0981-1  0.476
2013 Timmins-Schiffman E, Nunn BL, Goodlett DR, Roberts SB. Shotgun proteomics as a viable approach for biological discovery in the Pacific oyster. Conservation Physiology. 1: cot009. PMID 27293593 DOI: 10.1093/Conphys/Cot009  0.824
2013 Nunn BL, Faux JF, Hippmann AA, Maldonado MT, Harvey HR, Goodlett DR, Boyd PW, Strzepek RF. Diatom proteomics reveals unique acclimation strategies to mitigate Fe limitation. Plos One. 8: e75653. PMID 24146769 DOI: 10.1371/Journal.Pone.0075653  0.717
2013 Weng RR, Chu LJ, Shu HW, Wu TH, Chen MC, Chang Y, Tsai YS, Wilson MC, Tsay YG, Goodlett DR, Ng WV. Large precursor tolerance database search - a simple approach for estimation of the amount of spectra with precursor mass shifts in proteomic data. Journal of Proteomics. 91: 375-84. PMID 23933159 DOI: 10.1016/J.Jprot.2013.07.030  0.509
2013 Mattes TE, Nunn BL, Marshall KT, Proskurowski G, Kelley DS, Kawka OE, Goodlett DR, Hansell DA, Morris RM. Sulfur oxidizers dominate carbon fixation at a biogeochemical hot spot in the dark ocean. The Isme Journal. 7: 2349-60. PMID 23842654 DOI: 10.1038/Ismej.2013.113  0.649
2013 Singh P, Nakatani E, Goodlett DR, Catalano CE. A pseudo-atomic model for the capsid shell of bacteriophage lambda using chemical cross-linking/mass spectrometry and molecular modeling Journal of Molecular Biology. 425: 3378-3388. PMID 23811054 DOI: 10.1016/J.Jmb.2013.06.026  0.651
2013 Nguyen EV, Gharib SA, Palazzo SJ, Chow YH, Goodlett DR, Schnapp LM. Proteomic profiling of bronchoalveolar lavage fluid in critically ill patients with ventilator-associated pneumonia. Plos One. 8: e58782. PMID 23505561 DOI: 10.1371/Journal.Pone.0058782  0.701
2013 Chapman JD, Gagné JP, Poirier GG, Goodlett DR. Mapping PARP-1 auto-ADP-ribosylation sites by liquid chromatography-tandem mass spectrometry. Journal of Proteome Research. 12: 1868-80. PMID 23438649 DOI: 10.1021/Pr301219H  0.667
2013 Jung S, Smith JJ, von Haller PD, Dilworth DJ, Sitko KA, Miller LR, Saleem RA, Goodlett DR, Aitchison JD. Global analysis of condition-specific subcellular protein distribution and abundance. Molecular & Cellular Proteomics : McP. 12: 1421-35. PMID 23349476 DOI: 10.1074/Mcp.O112.019166  0.781
2013 Gong Y, Gallis BM, Goodlett DR, Yang Y, Lu H, Lacoste E, Lai H, Sasaki T. Effects of transferrin conjugates of artemisinin and artemisinin dimer on breast cancer cell lines. Anticancer Research. 33: 123-32. PMID 23267137  0.663
2012 Ryu S, Goodlett DR, Noble WS, Minin VN. A statistical approach to peptide identification from clustered tandem mass spectrometry data. Proceedings. Ieee International Conference On Bioinformatics and Biomedicine. 648-653. PMID 23828149 DOI: 10.1109/BIBMW.2012.6470214  0.783
2012 Lin X, Cook TJ, Zabetian CP, Leverenz JB, Peskind ER, Hu SC, Cain KC, Pan C, Edgar JS, Goodlett DR, Racette BA, Checkoway H, Montine TJ, Shi M, Zhang J. DJ-1 isoforms in whole blood as potential biomarkers of Parkinson disease. Scientific Reports. 2: 954. PMID 23233873 DOI: 10.1038/Srep00954  0.64
2012 Zhao C, Gao Q, Roberts AG, Shaffer SA, Doneanu CE, Xue S, Goodlett DR, Nelson SD, Atkins WM. Cross-linking mass spectrometry and mutagenesis confirm the functional importance of surface interactions between CYP3A4 and holo/apo cytochrome b(5). Biochemistry. 51: 9488-500. PMID 23150942 DOI: 10.1021/Bi301069R  0.704
2012 Goo YA, Cain K, Jarrett M, Smith L, Voss J, Tolentino E, Tsuji J, Tsai YS, Panchaud A, Goodlett DR, Shulman RJ, Heitkemper M. Urinary proteome analysis of irritable bowel syndrome (IBS) symptom subgroups. Journal of Proteome Research. 11: 5650-62. PMID 22998556 DOI: 10.1021/Pr3004437  0.808
2012 Rudra D, deRoos P, Chaudhry A, Niec RE, Arvey A, Samstein RM, Leslie C, Shaffer SA, Goodlett DR, Rudensky AY. Transcription factor Foxp3 and its protein partners form a complex regulatory network. Nature Immunology. 13: 1010-9. PMID 22922362 DOI: 10.1038/Ni.2402  0.476
2012 Foss EJ, Radulovic D, Stirewalt DL, Radich J, Sala-Torra O, Pogosova-Agadjanyan EL, Hengel SM, Loeb KR, Deeg HJ, Meshinchi S, Goodlett DR, Bedalov A. Proteomic classification of acute leukemias by alignment-based quantitation of LC-MS/MS data sets. Journal of Proteome Research. 11: 5005-10. PMID 22900933 DOI: 10.1021/Pr300567R  0.815
2012 Yoon SH, Huang Y, Edgar JS, Ting YS, Heron SR, Kao Y, Li Y, Masselon CD, Ernst RK, Goodlett DR. Surface acoustic wave nebulization facilitating lipid mass spectrometric analysis. Analytical Chemistry. 84: 6530-7. PMID 22742654 DOI: 10.1021/Ac300807P  0.808
2012 Moore EK, Nunn BL, Goodlett DR, Harvey HR. Identifying and tracking proteins through the marine water column: insights into the inputs and preservation mechanisms of protein in sediments. Geochimica Et Cosmochimica Acta. 83: 324-359. PMID 22711915 DOI: 10.1016/J.Gca.2012.01.002  0.807
2012 Karadzic I, Maupin-Furlow J, Humbard M, Prunetti L, Singh P, Goodlett DR. Chemical cross-linking, mass spectrometry, and in silico modeling of proteasomal 20S core particles of the haloarchaeon Haloferax volcanii. Proteomics. 12: 1806-14. PMID 22623373 DOI: 10.1002/Pmic.201100260  0.608
2012 Harrelson JP, Stamper BD, Chapman JD, Goodlett DR, Nelson SD. Covalent modification and time-dependent inhibition of human CYP2E1 by the meta-isomer of acetaminophen. Drug Metabolism and Disposition: the Biological Fate of Chemicals. 40: 1460-5. PMID 22613176 DOI: 10.1124/Dmd.112.045492  0.624
2012 Russell AB, Singh P, Brittnacher M, Bui NK, Hood RD, Carl MA, Agnello DM, Schwarz S, Goodlett DR, Vollmer W, Mougous JD. A widespread bacterial type VI secretion effector superfamily identified using a heuristic approach. Cell Host & Microbe. 11: 538-49. PMID 22607806 DOI: 10.1016/J.Chom.2012.04.007  0.637
2012 Li Y, Powell DA, Shaffer SA, Rasko DA, Pelletier MR, Leszyk JD, Scott AJ, Masoudi A, Goodlett DR, Wang X, Raetz CR, Ernst RK. LPS remodeling is an evolved survival strategy for bacteria. Proceedings of the National Academy of Sciences of the United States of America. 109: 8716-21. PMID 22586119 DOI: 10.1073/Pnas.1202908109  0.787
2012 Hengel SM, Goodlett DR. A Review of Tandem Mass Spectrometry Characterization of Adenosine Diphosphate-Ribosylated Peptides. International Journal of Mass Spectrometry. 312: 114-121. PMID 22563295 DOI: 10.1016/J.Ijms.2011.06.003  0.745
2012 Icenogle LM, Hengel SM, Coye LH, Streifel A, Collins CM, Goodlett DR, Moseley SL. Molecular and biological characterization of Streptococcal SpyA-mediated ADP-ribosylation of intermediate filament protein vimentin. The Journal of Biological Chemistry. 287: 21481-91. PMID 22549780 DOI: 10.1074/Jbc.M112.370791  0.73
2012 Huang Y, Yoon SH, Heron SR, Masselon CD, Edgar JS, Ture?ek F, Goodlett DR. Surface acoustic wave nebulization produces ions with lower internal energy than electrospray ionization. Journal of the American Society For Mass Spectrometry. 23: 1062-70. PMID 22476889 DOI: 10.1007/S13361-012-0352-8  0.779
2012 Liu X, Sirotkin Y, Shen Y, Anderson G, Tsai YS, Ting YS, Goodlett DR, Smith RD, Bafna V, Pevzner PA. Protein identification using top-down. Molecular & Cellular Proteomics : McP. 11: M111.008524. PMID 22027200 DOI: 10.1074/Mcp.M111.008524  0.795
2012 Moore EK, Nunn BL, Faux JF, Goodlett DR, Harvey HR. Evaluation of electrophoretic protein extraction and database-driven protein identification from marine sediments Limnology and Oceanography: Methods. 10: 353-366. DOI: 10.4319/Lom.2012.10.353  0.816
2012 Li Y, Powell DA, Shaffer SA, Rasko DA, Pelletier MR, Leszyk JD, Scott AJ, Masoudi A, Goodlett DR, Wang X, Raetz CRH, Ernst RK. LPS remodeling is an evolved survival strategy for bacteria (Proceedings of the National Academy of Sciences United States of America (2012) 109, (8716-8721) DOI: 10.1073/pnas.1202908109)) Proceedings of the National Academy of Sciences of the United States of America. 109: 13877. DOI: 10.1073/Pnas.1212463109  0.76
2011 Acosta-Martin AE, Panchaud A, Chwastyniak M, Dupont A, Juthier F, Gautier C, Jude B, Amouyel P, Goodlett DR, Pinet F. Quantitative mass spectrometry analysis using PAcIFIC for the identification of plasma diagnostic biomarkers for abdominal aortic aneurysm. Plos One. 6: e28698. PMID 22163325 DOI: 10.1371/Journal.Pone.0028698  0.688
2011 Hengel SM, Murray E, Langdon S, Hayward L, O'Donoghue J, Panchaud A, Hupp T, Goodlett DR. Data-independent proteomic screen identifies novel tamoxifen agonist that mediates drug resistance. Journal of Proteome Research. 10: 4567-78. PMID 21936522 DOI: 10.1021/Pr2004117  0.803
2011 Foss EJ, Radulovic D, Shaffer SA, Goodlett DR, Kruglyak L, Bedalov A. Genetic variation shapes protein networks mainly through non-transcriptional mechanisms. Plos Biology. 9: e1001144. PMID 21909241 DOI: 10.1371/Journal.Pbio.1001144  0.773
2011 Gharib SA, Nguyen EV, Lai Y, Plampin JD, Goodlett DR, Hallstrand TS. Induced sputum proteome in healthy subjects and asthmatic patients. The Journal of Allergy and Clinical Immunology. 128: 1176-1184.e6. PMID 21906793 DOI: 10.1016/J.Jaci.2011.07.053  0.713
2011 Shi M, Sui YT, Peskind ER, Li G, Hwang H, Devic I, Ginghina C, Edgar JS, Pan C, Goodlett DR, Furay AR, Gonzalez-Cuyar LF, Zhang J. Salivary tau species are potential biomarkers of Alzheimer's disease. Journal of Alzheimer's Disease : Jad. 27: 299-305. PMID 21841250 DOI: 10.3233/Jad-2011-110731  0.642
2011 Drew K, Winters P, Butterfoss GL, Berstis V, Uplinger K, Armstrong J, Riffle M, Schweighofer E, Bovermann B, Goodlett DR, Davis TN, Shasha D, Malmström L, Bonneau R. The Proteome Folding Project: proteome-scale prediction of structure and function. Genome Research. 21: 1981-94. PMID 21824995 DOI: 10.1101/Gr.121475.111  0.616
2011 MacArthur I, Jones JW, Goodlett DR, Ernst RK, Preston A. Role of pagL and lpxO in Bordetella bronchiseptica lipid A biosynthesis. Journal of Bacteriology. 193: 4726-35. PMID 21764941 DOI: 10.1128/Jb.01502-10  0.692
2011 Chu LJ, Yang H, Shih P, Kao Y, Tsai YS, Chen J, Huang G, Weng RR, Ting YS, Fang X, von Haller PD, Goodlett DR, Ng WV. Metabolic capabilities and systems fluctuations in Haloarcula marismortui revealed by integrative genomics and proteomics analyses. Journal of Proteome Research. 10: 3261-73. PMID 21598921 DOI: 10.1021/Pr200290X  0.794
2011 Thatcher JE, Buttrick B, Shaffer SA, Shimshoni JA, Goodlett DR, Nelson WL, Isoherranen N. Substrate specificity and ligand interactions of CYP26A1, the human liver retinoic acid hydroxylase. Molecular Pharmacology. 80: 228-39. PMID 21521770 DOI: 10.1124/Mol.111.072413  0.425
2011 Ting YS, Shaffer SA, Jones JW, Ng WV, Ernst RK, Goodlett DR. Automated lipid A structure assignment from hierarchical tandem mass spectrometry data. Journal of the American Society For Mass Spectrometry. 22: 856-66. PMID 21472520 DOI: 10.1007/S13361-010-0055-Y  0.803
2011 Devic I, Hwang H, Edgar JS, Izutsu K, Presland R, Pan C, Goodlett DR, Wang Y, Armaly J, Tumas V, Zabetian CP, Leverenz JB, Shi M, Zhang J. Salivary α-synuclein and DJ-1: potential biomarkers for Parkinson's disease. Brain : a Journal of Neurology. 134: e178. PMID 21349902 DOI: 10.1093/Brain/Awr015  0.629
2011 Panchaud A, Jung S, Shaffer SA, Aitchison JD, Goodlett DR. Faster, quantitative, and accurate precursor acquisition independent from ion count. Analytical Chemistry. 83: 2250-7. PMID 21341720 DOI: 10.1021/Ac103079Q  0.808
2011 Mealman TD, Bagai I, Singh P, Goodlett DR, Rensing C, Zhou H, Wysocki VH, McEvoy MM. Interactions between CusF and CusB identified by NMR spectroscopy and chemical cross-linking coupled to mass spectrometry. Biochemistry. 50: 2559-66. PMID 21323389 DOI: 10.1021/Bi102012J  0.624
2011 Fang X, Yoon JG, Li L, Tsai YS, Zheng S, Hood L, Goodlett DR, Foltz G, Lin B. Landscape of the SOX2 protein-protein interactome. Proteomics. 11: 921-34. PMID 21280222 DOI: 10.1002/Pmic.201000419  0.472
2011 Fang X, Yoon JG, Li L, Yu W, Shao J, Hua D, Zheng S, Hood L, Goodlett DR, Foltz G, Lin B. The SOX2 response program in glioblastoma multiforme: an integrated ChIP-seq, expression microarray, and microRNA analysis. Bmc Genomics. 12: 11. PMID 21211035 DOI: 10.1186/1471-2164-12-11  0.383
2011 Chu LJ, Chen MC, Setter J, Tsai YS, Yang H, Fang X, Ting YS, Shaffer SA, Taylor GK, von Haller PD, Goodlett DR, Ng WV. New structural proteins of Halobacterium salinarum gas vesicle revealed by comparative proteomics analysis. Journal of Proteome Research. 10: 1170-8. PMID 21158390 DOI: 10.1021/Pr1009383  0.799
2011 Velasquez I, Nunn BL, Ibisanmi E, Goodlett DR, Hunter KA, Sander SG. Detection of hydroxamate siderophores in coastal and Sub-Antarctic waters off the South Eastern Coast of New Zealand Marine Chemistry. 126: 97-107. DOI: 10.1016/J.Marchem.2011.04.003  0.625
2010 Malmström L, Goodlett DR. Protein structure modeling. Methods in Molecular Biology (Clifton, N.J.). 673: 63-72. PMID 20835793 DOI: 10.1007/978-1-60761-842-3_5  0.628
2010 Sanowar S, Singh P, Pfuetzner RA, André I, Zheng H, Spreter T, Strynadka NC, Gonen T, Baker D, Goodlett DR, Miller SI. Interactions of the transmembrane polymeric rings of the Salmonella enterica serovar Typhimurium type III secretion system. Mbio. 1. PMID 20824104 DOI: 10.1128/Mbio.00158-10  0.635
2010 Goo YA, Tsai YS, Liu AY, Goodlett DR, Yang CC. Urinary proteomics evaluation in interstitial cystitis/painful bladder syndrome: a pilot study. International Braz J Urol : Official Journal of the Brazilian Society of Urology. 36: 464-78; discussion 4. PMID 20815953 DOI: 10.1590/S1677-55382010000400010  0.611
2010 McMillan DG, Velasquez I, Nunn BL, Goodlett DR, Hunter KA, Lamont I, Sander SG, Cook GM. Acquisition of iron by alkaliphilic bacillus species. Applied and Environmental Microbiology. 76: 6955-61. PMID 20802068 DOI: 10.1128/Aem.01393-10  0.625
2010 Hengel SM, Icenogle L, Collins C, Goodlett DR. Sequence assignment of ADP-ribosylated peptides is facilitated as peptide length increases. Rapid Communications in Mass Spectrometry : Rcm. 24: 2312-6. PMID 20623715 DOI: 10.1002/Rcm.4600  0.705
2010 Chakrabarti L, Zahra R, Jackson SM, Kazemi-Esfarjani P, Sopher BL, Mason AG, Toneff T, Ryu S, Shaffer S, Kansy JW, Eng J, Merrihew G, MacCoss MJ, Murphy A, Goodlett DR, et al. Mitochondrial dysfunction in NnaD mutant flies and Purkinje cell degeneration mice reveals a role for Nna proteins in neuronal bioenergetics. Neuron. 66: 835-47. PMID 20620870 DOI: 10.1016/J.Neuron.2010.05.024  0.638
2010 Mo F, Mo Q, Chen Y, Goodlett DR, Hood L, Omenn GS, Li S, Lin B. WaveletQuant, an improved quantification software based on wavelet signal threshold de-noising for labeled quantitative proteomic analysis. Bmc Bioinformatics. 11: 219. PMID 20429928 DOI: 10.1186/1471-2105-11-219  0.446
2010 Goo YA, Goodlett DR. Advances in proteomic prostate cancer biomarker discovery. Journal of Proteomics. 73: 1839-50. PMID 20398807 DOI: 10.1016/J.Jprot.2010.04.002  0.595
2010 Heron SR, Wilson R, Shaffer SA, Goodlett DR, Cooper JM. Surface acoustic wave nebulization of peptides as a microfluidic interface for mass spectrometry. Analytical Chemistry. 82: 3985-9. PMID 20364823 DOI: 10.1021/Ac100372C  0.749
2010 McIlwain S, Draghicescu P, Singh P, Goodlett DR, Noble WS. Detecting cross-linked peptides by searching against a database of cross-linked peptide pairs. Journal of Proteome Research. 9: 2488-95. PMID 20349954 DOI: 10.1021/Pr901163D  0.709
2010 Panchaud A, Singh P, Shaffer SA, Goodlett DR. xComb: a cross-linked peptide database approach to protein-protein interaction analysis. Journal of Proteome Research. 9: 2508-15. PMID 20302351 DOI: 10.1021/Pr9011816  0.8
2010 Kim JH, Stevens RC, MacCoss MJ, Goodlett DR, Scherl A, Richter RJ, Suzuki SM, Furlong CE. Identification and characterization of biomarkers of organophosphorus exposures in humans. Advances in Experimental Medicine and Biology. 660: 61-71. PMID 20221871 DOI: 10.1007/978-1-60761-350-3_7  0.644
2010 Singh P, Panchaud A, Goodlett DR. Chemical cross-linking and mass spectrometry as a low-resolution protein structure determination technique. Analytical Chemistry. 82: 2636-42. PMID 20210330 DOI: 10.1021/Ac1000724  0.818
2010 Jones JW, Cohen IE, Tureĉek F, Goodlett DR, Ernst RK. Comprehensive structure characterization of lipid A extracted from Yersinia pestis for determination of its phosphorylation configuration. Journal of the American Society For Mass Spectrometry. 21: 785-99. PMID 20185334 DOI: 10.1016/J.Jasms.2010.01.008  0.699
2010 Morris RM, Nunn BL, Frazar C, Goodlett DR, Ting YS, Rocap G. Comparative metaproteomics reveals ocean-scale shifts in microbial nutrient utilization and energy transduction. The Isme Journal. 4: 673-85. PMID 20164862 DOI: 10.1038/Ismej.2010.4  0.794
2010 Morrissey C, Gallis B, Solazzi JW, Kim BJ, Gulati R, Vakar-Lopez F, Goodlett DR, Vessella RL, Sasaki T. Effect of artemisinin derivatives on apoptosis and cell cycle in prostate cancer cells. Anti-Cancer Drugs. 21: 423-32. PMID 20130467 DOI: 10.1097/Cad.0B013E328336F57B  0.688
2010 Hood RD, Singh P, Hsu F, Güvener T, Carl MA, Trinidad RR, Silverman JM, Ohlson BB, Hicks KG, Plemel RL, Li M, Schwarz S, Wang WY, Merz AJ, Goodlett DR, et al. A type VI secretion system of Pseudomonas aeruginosa targets a toxin to bacteria. Cell Host & Microbe. 7: 25-37. PMID 20114026 DOI: 10.1016/J.Chom.2009.12.007  0.638
2010 Gharib SA, Nguyen E, Altemeier WA, Shaffer SA, Doneanu CE, Goodlett DR, Schnapp LM. Of mice and men: Comparative proteomics of bronchoalveolar fluid European Respiratory Journal. 35: 1388-1395. PMID 20032019 DOI: 10.1183/09031936.00089409  0.794
2010 Jung S, Marelli M, Rachubinski RA, Goodlett DR, Aitchison JD. Dynamic changes in the subcellular distribution of Gpd1p in response to cell stress. The Journal of Biological Chemistry. 285: 6739-49. PMID 20026609 DOI: 10.1074/Jbc.M109.058552  0.707
2010 Parra MC, Shaffer SA, Hajjar AM, Gallis BM, Hager A, Goodlett DR, Guina T, Miller S, Collins CM. Identification, cloning, expression, and purification of Francisella lpp3: an immunogenic lipoprotein. Microbiological Research. 165: 531-45. PMID 20006480 DOI: 10.1016/J.Micres.2009.11.004  0.75
2010 Nunn BL, Ting YS, Malmström L, Tsai YS, Squier A, Goodlett DR, Harvey HR. The path to preservation: Using proteomics to decipher the fate of diatom proteins during microbial degradation Limnology and Oceanography. 55: 1790-1804. DOI: 10.4319/Lo.2010.55.4.1790  0.824
2009 Brentnall TA, Pan S, Bronner MP, Crispin DA, Mirzaei H, Cooke K, Tamura Y, Nikolskaya T, Jebailey L, Goodlett DR, McIntosh M, Aebersold R, Rabinovitch PS, Chen R. Proteins That Underlie Neoplastic Progression of Ulcerative Colitis. Proteomics. Clinical Applications. 3: 1326. PMID 20098637 DOI: 10.1002/Prca.200900061  0.426
2009 Nunn BL, Aker JR, Shaffer SA, Tsai S, Strzepek RF, Boyd PW, Freeman TL, Brittnacher M, Malmström L, Goodlett DR. Deciphering diatom biochemical pathways via whole-cell proteomics. Aquatic Microbial Ecology : International Journal. 55: 241-253. PMID 19829762 DOI: 10.3354/Ame01284  0.796
2009 Reimel BA, Pan S, May DH, Shaffer SA, Goodlett DR, McIntosh MW, Yerian LM, Bronner MP, Chen R, Brentnall TA. Proteomics on Fixed Tissue Specimens - A Review. Current Proteomics. 6: 63-69. PMID 19829741 DOI: 10.2174/157016409787847420  0.745
2009 Tsai YS, Scherl A, Shaw JL, MacKay CL, Shaffer SA, Langridge-Smith PR, Goodlett DR. Precursor ion independent algorithm for top-down shotgun proteomics. Journal of the American Society For Mass Spectrometry. 20: 2154-66. PMID 19773183 DOI: 10.1016/J.Jasms.2009.07.024  0.772
2009 Wang X, Lundgren AD, Singh P, Goodlett DR, Plymate SR, Wu JD. An six-amino acid motif in the alpha3 domain of MICA is the cancer therapeutic target to inhibit shedding. Biochemical and Biophysical Research Communications. 387: 476-81. PMID 19615970 DOI: 10.1016/J.Bbrc.2009.07.062  0.593
2009 Panchaud A, Scherl A, Shaffer SA, von Haller PD, Kulasekara HD, Miller SI, Goodlett DR. Precursor acquisition independent from ion count: how to dive deeper into the proteomics ocean. Analytical Chemistry. 81: 6481-8. PMID 19572557 DOI: 10.1021/Ac900888S  0.817
2009 Coats SR, Jones JW, Do CT, Braham PH, Bainbridge BW, To TT, Goodlett DR, Ernst RK, Darveau RP. Human Toll-like receptor 4 responses to P. gingivalis are regulated by lipid A 1- and 4'-phosphatase activities. Cellular Microbiology. 11: 1587-99. PMID 19552698 DOI: 10.1111/J.1462-5822.2009.01349.X  0.705
2009 Pan S, Chen R, Reimel BA, Crispin DA, Mirzaei H, Cooke K, Coleman JF, Lane Z, Bronner MP, Goodlett DR, McIntosh MW, Traverso W, Aebersold R, Brentnall TA. Quantitative proteomics investigation of pancreatic intraepithelial neoplasia. Electrophoresis. 30: 1132-44. PMID 19373808 DOI: 10.1002/Elps.200800752  0.428
2009 Pan S, Aebersold R, Chen R, Rush J, Goodlett DR, McIntosh MW, Zhang J, Brentnall TA. Mass spectrometry based targeted protein quantification: methods and applications. Journal of Proteome Research. 8: 787-97. PMID 19105742 DOI: 10.1021/Pr800538N  0.483
2009 Moore NH, Costa LG, Shaffer SA, Goodlett DR, Guizzetti M. Shotgun proteomics implicates extracellular matrix proteins and protease systems in neuronal development induced by astrocyte cholinergic stimulation. Journal of Neurochemistry. 108: 891-908. PMID 19077055 DOI: 10.1111/j.1471-4159.2008.05836.x  0.552
2009 Hengel SM, Shaffer SA, Nunn BL, Goodlett DR. Tandem mass spectrometry investigation of ADP-ribosylated kemptide. Journal of the American Society For Mass Spectrometry. 20: 477-83. PMID 19070509 DOI: 10.1016/J.Jasms.2008.10.025  0.815
2009 Nakase I, Gallis B, Takatani-Nakase T, Oh S, Lacoste E, Singh NP, Goodlett DR, Tanaka S, Futaki S, Lai H, Sasaki T. Transferrin receptor-dependent cytotoxicity of artemisinin-transferrin conjugates on prostate cancer cells and induction of apoptosis. Cancer Letters. 274: 290-8. PMID 19006645 DOI: 10.1016/J.Canlet.2008.09.023  0.657
2009 Pacheco B, Maccarana M, Goodlett DR, Malmström A, Malmström L. Identification of the active site of DS-epimerase 1 and requirement of N-glycosylation for enzyme function. The Journal of Biological Chemistry. 284: 1741-7. PMID 19004833 DOI: 10.1074/Jbc.M805479200  0.599
2009 Goo YA, Liu AY, Ryu S, Shaffer SA, Malmström L, Page L, Nguyen LT, Doneanu CE, Goodlett DR. Identification of secreted glycoproteins of human prostate and bladder stromal cells by comparative quantitative proteomics. The Prostate. 69: 49-61. PMID 18792917 DOI: 10.1002/Pros.20853  0.788
2009 Goo YA, Goodlett DR, Liu AY, Yang CC, Buchwald D, Krieger JN. URINARY PROTEOMICS APPROACH TO INTERSTITIAL CYSTITIS/PAINFUL BLADDER SYNDROME PATHOPHYSIOLOGY Journal of Urology. 181: 17-17. DOI: 10.1016/S0022-5347(09)60060-4  0.599
2009 Brentnall TA, Pan S, Bronner MP, Crispin DA, Mirzaei H, Cooke K, Tamura Y, Nikolskaya T, JeBailey L, Goodlett DR, McIntosh M, Aebersold R, Rabinovitch PS, Chen R. Proteins that underlie neoplastic progression of ulcerative colitis Proteomics - Clinical Applications. 3: 1326-1337. DOI: 10.1002/prca.200900061  0.396
2008 Chen J, Ryu S, Gharib SA, Goodlett DR, Schnapp LM. Exploration of the normal human bronchoalveolar lavage fluid proteome. Proteomics. Clinical Applications. 2: 585-95. PMID 21136857 DOI: 10.1002/Prca.200780006  0.812
2008 Ryu S, Gallis B, Goo YA, Shaffer SA, Radulovic D, Goodlett DR. Comparison of a label-free quantitative proteomic method based on peptide ion current area to the isotope coded affinity tag method. Cancer Informatics. 6: 243-55. PMID 19259412 DOI: 10.4137/Cin.S385  0.804
2008 Gao Q, Xue S, Shaffer SA, Doneanu CE, Goodlett DR, Nelson SD. Minimize the detection of false positives by the software program DetectShift for 18O-labeled cross-linked peptide analysis. European Journal of Mass Spectrometry (Chichester, England). 14: 275-80. PMID 19023145 DOI: 10.1255/Ejms.939  0.713
2008 Singh P, Shaffer SA, Scherl A, Holman C, Pfuetzner RA, Larson Freeman TJ, Miller SI, Hernandez P, Appel RD, Goodlett DR. Characterization of protein cross-links via mass spectrometry and an open-modification search strategy. Analytical Chemistry. 80: 8799-806. PMID 18947195 DOI: 10.1021/Ac801646F  0.822
2008 Jones JW, Shaffer SA, Ernst RK, Goodlett DR, Turecek F. Determination of pyrophosphorylated forms of lipid A in Gram-negative bacteria using a multivaried mass spectrometric approach. Proceedings of the National Academy of Sciences of the United States of America. 105: 12742-7. PMID 18753624 DOI: 10.1073/Pnas.0800445105  0.799
2008 Scherl A, Tsai YS, Shaffer SA, Goodlett DR. Increasing information from shotgun proteomic data by accounting for misassigned precursor ion masses. Proteomics. 8: 2791-7. PMID 18655048 DOI: 10.1002/Pmic.200800045  0.75
2008 Scherl A, Shaffer SA, Taylor GK, Hernandez P, Appel RD, Binz PA, Goodlett DR. On the benefits of acquiring peptide fragment ions at high measured mass accuracy. Journal of the American Society For Mass Spectrometry. 19: 891-901. PMID 18417358 DOI: 10.1016/J.Jasms.2008.02.005  0.745
2008 Rohmer L, Guina T, Chen J, Gallis B, Taylor GK, Shaffer SA, Miller SI, Brittnacher MJ, Goodlett DR. Determination and comparison of the Francisella tularensis subsp.novicida U112 proteome to other bacterial proteomes. Journal of Proteome Research. 7: 2016-24. PMID 18380474 DOI: 10.1021/Pr700760Z  0.817
2008 Kanistanon D, Hajjar AM, Pelletier MR, Gallagher LA, Kalhorn T, Shaffer SA, Goodlett DR, Rohmer L, Brittnacher MJ, Skerrett SJ, Ernst RK. A Francisella mutant in lipid A carbohydrate modification elicits protective immunity. Plos Pathogens. 4: e24. PMID 18266468 DOI: 10.1371/Journal.Ppat.0040024  0.698
2008 Scherl A, Shaffer SA, Taylor GK, Kulasekara HD, Miller SI, Goodlett DR. Genome-specific gas-phase fractionation strategy for improved shotgun proteomic profiling of proteotypic peptides. Analytical Chemistry. 80: 1182-91. PMID 18211032 DOI: 10.1021/Ac701680F  0.742
2007 Goodlett DR, Yi EC, Mottay P. Preparation and Use of an Integrated Microcapillary HPLC Column and ESI Device for Proteomic Analysis. Csh Protocols. 2007: pdb.prot4617. PMID 21357072 DOI: 10.1101/Pdb.Prot4617  0.618
2007 Corthals GL, Wasinger VC, Goodlett DR. Analysis of Phosphopeptides by {micro}LC-ESI-MS/MS. Csh Protocols. 2007: pdb.prot4625. PMID 21356967 DOI: 10.1101/Pdb.Prot4625  0.629
2007 Corthals GL, Wasinger VC, Goodlett DR. Offline Micro-IMAC Enrichment of Phosphoproteins. Csh Protocols. 2007: pdb.prot4624. PMID 21356966 DOI: 10.1101/Pdb.Prot4624  0.614
2007 Goo YA, Li Z, Pajkovic N, Shaffer S, Taylor G, Chen J, Campbell D, Arnstein L, Goodlett DR, van Breemen RB. Systematic investigation of lycopene effects in LNCaP cells by use of novel large-scale proteomic analysis software. Proteomics. Clinical Applications. 1: 513-523. PMID 20740054 DOI: 10.1002/Prca.200600511  0.797
2007 Foss EJ, Radulovic D, Shaffer SA, Ruderfer DM, Bedalov A, Goodlett DR, Kruglyak L. Genetic basis of proteome variation in yeast. Nature Genetics. 39: 1369-75. PMID 17952072 DOI: 10.1038/Ng.2007.22  0.785
2007 Guina T, Radulovic D, Bahrami AJ, Bolton DL, Rohmer L, Jones-Isaac KA, Chen J, Gallagher LA, Gallis B, Ryu S, Taylor GK, Brittnacher MJ, Manoil C, Goodlett DR. MglA regulates Francisella tularensis subsp. novicida (Francisella novicida) response to starvation and oxidative stress. Journal of Bacteriology. 189: 6580-6. PMID 17644593 DOI: 10.1128/Jb.00809-07  0.785
2007 Prakash A, Piening B, Whiteaker J, Zhang H, Shaffer SA, Martin D, Hohmann L, Cooke K, Olson JM, Hansen S, Flory MR, Lee H, Watts J, Goodlett DR, Aebersold R, et al. Assessing bias in experiment design for large scale mass spectrometry-based quantitative proteomics. Molecular & Cellular Proteomics : McP. 6: 1741-8. PMID 17617667 DOI: 10.1074/Mcp.M600470-Mcp200  0.613
2007 Rohmer L, Fong C, Abmayr S, Wasnick M, Larson Freeman TJ, Radey M, Guina T, Svensson K, Hayden HS, Jacobs M, Gallagher LA, Manoil C, Ernst RK, Drees B, Buckley D, ... ... Goodlett DR, et al. Comparison of Francisella tularensis genomes reveals evolutionary events associated with the emergence of human pathogenic strains. Genome Biology. 8: R102. PMID 17550600 DOI: 10.1186/Gb-2007-8-6-R102  0.768
2007 Chen R, Brentnall TA, Pan S, Cooke K, Moyes KW, Lane Z, Crispin DA, Goodlett DR, Aebersold R, Bronner MP. Quantitative proteomics analysis reveals that proteins differentially expressed in chronic pancreatitis are also frequently involved in pancreatic cancer. Molecular & Cellular Proteomics : McP. 6: 1331-42. PMID 17496331 DOI: 10.1074/Mcp.M700072-Mcp200  0.383
2007 D'Argenio DA, Wu M, Hoffman LR, Kulasekara HD, Déziel E, Smith EE, Nguyen H, Ernst RK, Larson Freeman TJ, Spencer DH, Brittnacher M, Hayden HS, Selgrade S, Klausen M, Goodlett DR, et al. Growth phenotypes of Pseudomonas aeruginosa lasR mutants adapted to the airways of cystic fibrosis patients. Molecular Microbiology. 64: 512-33. PMID 17493132 DOI: 10.1111/J.1365-2958.2007.05678.X  0.776
2007 Shaffer SA, Harvey MD, Goodlett DR, Ernst RK. Structural heterogeneity and environmentally regulated remodeling of Francisella tularensis subspecies novicida lipid A characterized by tandem mass spectrometry. Journal of the American Society For Mass Spectrometry. 18: 1080-92. PMID 17446084 DOI: 10.1016/J.Jasms.2007.03.008  0.732
2007 Pan S, Zhu D, Quinn JF, Peskind ER, Montine TJ, Lin B, Goodlett DR, Taylor G, Eng J, Zhang J. A combined dataset of human cerebrospinal fluid proteins identified by multi-dimensional chromatography and tandem mass spectrometry. Proteomics. 7: 469-73. PMID 17211832 DOI: 10.1002/Pmic.200600756  0.736
2007 Chen R, Pan S, Cooke K, Moyes KW, Bronner MP, Goodlett DR, Aebersold R, Brentnall TA. Comparison of pancreas juice proteins from cancer versus pancreatitis using quantitative proteomic analysis. Pancreas. 34: 70-9. PMID 17198186 DOI: 10.1097/01.Mpa.0000240615.20474.Fd  0.333
2007 Jones JW, Sasaki T, Goodlett DR, Turecek F. Electron capture in spin-trap capped peptides. An experimental example of ergodic dissociation in peptide cation-radicals. Journal of the American Society For Mass Spectrometry. 18: 432-44. PMID 17112737 DOI: 10.1016/J.Jasms.2006.10.005  0.586
2006 Hajjar AM, Harvey MD, Shaffer SA, Goodlett DR, Sjöstedt A, Edebro H, Forsman M, Byström M, Pelletier M, Wilson CB, Miller SI, Skerrett SJ, Ernst RK. Lack of in vitro and in vivo recognition of Francisella tularensis subspecies lipopolysaccharide by Toll-like receptors. Infection and Immunity. 74: 6730-8. PMID 16982824 DOI: 10.1128/Iai.00934-06  0.712
2006 Schnapp LM, Donohoe S, Chen J, Sunde DA, Kelly PM, Ruzinski J, Martin T, Goodlett DR. Mining the acute respiratory distress syndrome proteome: identification of the insulin-like growth factor (IGF)/IGF-binding protein-3 pathway in acute lung injury. The American Journal of Pathology. 169: 86-95. PMID 16816363 DOI: 10.2353/Ajpath.2006.050612  0.79
2006 Nunn BL, Shaffer SA, Scherl A, Gallis B, Wu M, Miller SI, Goodlett DR. Comparison of a Salmonella typhimurium proteome defined by shotgun proteomics directly on an LTQ-FT and by proteome pre-fractionation on an LCQ-DUO. Briefings in Functional Genomics & Proteomics. 5: 154-68. PMID 16798750 DOI: 10.1093/Bfgp/Ell024  0.814
2006 Chen R, Pan S, Yi EC, Donohoe S, Bronner MP, Potter JD, Goodlett DR, Aebersold R, Brentnall TA. Quantitative proteomic profiling of pancreatic cancer juice. Proteomics. 6: 3871-9. PMID 16739137 DOI: 10.1002/Pmic.200500702  0.8
2006 Xu J, Chen J, Peskind ER, Jin J, Eng J, Pan C, Montine TJ, Goodlett DR, Zhang J. Characterization of proteome of human cerebrospinal fluid. International Review of Neurobiology. 73: 29-98. PMID 16737901 DOI: 10.1016/S0074-7742(06)73002-1  0.768
2006 Gao Q, Doneanu CE, Shaffer SA, Adman ET, Goodlett DR, Nelson SD. Identification of the interactions between cytochrome P450 2E1 and cytochrome b5 by mass spectrometry and site-directed mutagenesis. The Journal of Biological Chemistry. 281: 20404-17. PMID 16679316 DOI: 10.1074/Jbc.M601785200  0.734
2006 Gao Q, Xue S, Doneanu CE, Shaffer SA, Goodlett DR, Nelson SD. Pro-CrossLink. Software tool for protein cross-linking and mass spectrometry. Analytical Chemistry. 78: 2145-9. PMID 16579592 DOI: 10.1021/Ac051339C  0.765
2006 Gan RR, Yi EC, Chiu Y, Lee H, Kao YC, Wu TH, Aebersold R, Goodlett DR, Ng WV. Proteome analysis of Halobacterium sp. NRC-1 facilitated by the biomodule analysis tool BMSorter. Molecular & Cellular Proteomics : McP. 5: 987-97. PMID 16497792 DOI: 10.1074/Mcp.M500367-Mcp200  0.682
2005 Corthals GL, Aebersold R, Goodlett DR. Identification of phosphorylation sites using microimmobilized metal affinity chromatography. Methods in Enzymology. 405: 66-81. PMID 16413311 DOI: 10.1016/S0076-6879(05)05004-4  0.646
2005 Chen SS, Deutsch EW, Yi EC, Li XJ, Goodlett DR, Aebersold R. Improving mass and liquid chromatography based identification of proteins using bayesian scoring. Journal of Proteome Research. 4: 2174-84. PMID 16335964 DOI: 10.1021/Pr050251C  0.689
2005 Chen R, Yi EC, Donohoe S, Pan S, Eng J, Cooke K, Crispin DA, Lane Z, Goodlett DR, Bronner MP, Aebersold R, Brentnall TA. Pancreatic cancer proteome: the proteins that underlie invasion, metastasis, and immunologic escape. Gastroenterology. 129: 1187-97. PMID 16230073 DOI: 10.1053/J.Gastro.2005.08.001  0.774
2005 Welch KD, Wen B, Goodlett DR, Yi EC, Lee H, Reilly TP, Nelson SD, Pohl LR. Proteomic identification of potential susceptibility factors in drug-induced liver disease. Chemical Research in Toxicology. 18: 924-33. PMID 15962927 DOI: 10.1021/Tx050011B  0.609
2005 Zhang J, Goodlett DR, Quinn JF, Peskind E, Kaye JA, Zhou Y, Pan C, Yi E, Eng J, Wang Q, Aebersold RH, Montine TJ. Quantitative proteomics of cerebrospinal fluid from patients with Alzheimer disease. Journal of Alzheimer's Disease : Jad. 7: 125-33; discussion 1. PMID 15851850 DOI: 10.3233/Jad-2005-7205  0.646
2005 Lin B, White JT, Lu W, Xie T, Utleg AG, Yan X, Yi EC, Shannon P, Khrebtukova I, Lange PH, Goodlett DR, Zhou D, Vasicek TJ, Hood L. Evidence for the presence of disease-perturbed networks in prostate cancer cells by genomic and proteomic analyses: a systems approach to disease. Cancer Research. 65: 3081-91. PMID 15833837 DOI: 10.1158/0008-5472.Can-04-3218  0.668
2005 Molloy MP, Donohoe S, Brzezinski EE, Kilby GW, Stevenson TI, Baker JD, Goodlett DR, Gage DA. Large-scale evaluation of quantitative reproducibility and proteome coverage using acid cleavable isotope coded affinity tag mass spectrometry for proteomic profiling. Proteomics. 5: 1204-8. PMID 15732134 DOI: 10.1002/Pmic.200400994  0.454
2005 Yi EC, Li XJ, Cooke K, Lee H, Raught B, Page A, Aneliunas V, Hieter P, Goodlett DR, Aebersold R. Increased quantitative proteome coverage with (13)C/(12)C-based, acid-cleavable isotope-coded affinity tag reagent and modified data acquisition scheme. Proteomics. 5: 380-7. PMID 15648049 DOI: 10.1002/Pmic.200400970  0.714
2005 Zhang J, Goodlett DR, Peskind ER, Quinn JF, Zhou Y, Wang Q, Pan C, Yi E, Eng J, Aebersold RH, Montine TJ. Quantitative proteomic analysis of age-related changes in human cerebrospinal fluid. Neurobiology of Aging. 26: 207-27. PMID 15582749 DOI: 10.1016/J.Neurobiolaging.2004.03.012  0.692
2004 Yi EC, Goodlett DR. Quantitative protein profile comparisons using the isotope-coded affinity tag method. Current Protocols in Protein Science / Editorial Board, John E. Coligan ... [Et Al.]. Unit 23.2. PMID 18429263 DOI: 10.1002/0471140864.ps2302s34  0.638
2004 Marelli M, Smith JJ, Jung S, Yi E, Nesvizhskii AI, Christmas RH, Saleem RA, Tam YY, Fagarasanu A, Goodlett DR, Aebersold R, Rachubinski RA, Aitchison JD. Quantitative mass spectrometry reveals a role for the GTPase Rho1p in actin organization on the peroxisome membrane. The Journal of Cell Biology. 167: 1099-112. PMID 15596542 DOI: 10.1083/Jcb.200404119  0.819
2004 Wollscheid B, von Haller PD, Yi E, Donohoe S, Vaughn K, Keller A, Nesvizhskii AI, Eng J, Li XJ, Goodlett DR, Aebersold R, Watts JD. Lipid raft proteins and their identification in T lymphocytes. Sub-Cellular Biochemistry. 37: 121-52. PMID 15376619 DOI: 10.1007/978-1-4757-5806-1_3  0.811
2004 Yan W, Lee H, Yi EC, Reiss D, Shannon P, Kwieciszewski BK, Coito C, Li XJ, Keller A, Eng J, Galitski T, Goodlett DR, Aebersold R, Katze MG. System-based proteomic analysis of the interferon response in human liver cells. Genome Biology. 5: R54. PMID 15287976 DOI: 10.1186/Gb-2004-5-8-R54  0.692
2004 Zhou Y, Gu G, Goodlett DR, Zhang T, Pan C, Montine TJ, Montine KS, Aebersold RH, Zhang J. Analysis of alpha-synuclein-associated proteins by quantitative proteomics. The Journal of Biological Chemistry. 279: 39155-64. PMID 15234983 DOI: 10.1074/Jbc.M405456200  0.419
2004 Lee H, Yi EC, Wen B, Reily TP, Pohl L, Nelson S, Aebersold R, Goodlett DR. Optimization of reversed-phase microcapillary liquid chromatography for quantitative proteomics. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 803: 101-10. PMID 15026003 DOI: 10.1016/J.Jchromb.2003.09.005  0.718
2004 Hardwidge PR, Rodriguez-Escudero I, Goode D, Donohoe S, Eng J, Goodlett DR, Aebersold R, Finlay BB. Proteomic analysis of the intestinal epithelial cell response to enteropathogenic Escherichia coli. The Journal of Biological Chemistry. 279: 20127-36. PMID 14988394 DOI: 10.1074/Jbc.M401228200  0.537
2004 MacKay VL, Li X, Flory MR, Turcott E, Law GL, Serikawa KA, Xu XL, Lee H, Goodlett DR, Aebersold R, Zhao LP, Morris DR. Gene expression analyzed by high-resolution state array analysis and quantitative proteomics: response of yeast to mating pheromone. Molecular & Cellular Proteomics : McP. 3: 478-89. PMID 14766929 DOI: 10.1074/Mcp.M300129-Mcp200  0.499
2004 Martin DB, Gifford DR, Wright ME, Keller A, Yi E, Goodlett DR, Aebersold R, Nelson PS. Quantitative proteomic analysis of proteins released by neoplastic prostate epithelium. Cancer Research. 64: 347-55. PMID 14729644 DOI: 10.1158/0008-5472.Can-03-2062  0.68
2003 Fejes AP, Yi EC, Goodlett DR, Beatty JT. Shotgun proteomic analysis of a chromatophore-enriched preparation from the purple phototrophic bacterium Rhodopseudomonas palustris. Photosynthesis Research. 78: 195-203. PMID 16245051 DOI: 10.1023/B:Pres.0000006752.81486.74  0.676
2003 Yi EC, Lee H, Aebersold R, Goodlett DR. A microcapillary trap cartridge-microcapillary high-performance liquid chromatography electrospray ionization emitter device capable of peptide tandem mass spectrometry at the attomole level on an ion trap mass spectrometer with automated routine operation. Rapid Communications in Mass Spectrometry : Rcm. 17: 2093-8. PMID 12955739 DOI: 10.1002/Rcm.1150  0.705
2003 Goo YA, Yi EC, Baliga NS, Tao WA, Pan M, Aebersold R, Goodlett DR, Hood L, Ng WV. Proteomic analysis of an extreme halophilic archaeon, Halobacterium sp. NRC-1. Molecular & Cellular Proteomics : McP. 2: 506-24. PMID 12872007 DOI: 10.1074/Mcp.M300044-Mcp200  0.826
2003 Kolker E, Purvine S, Galperin MY, Stolyar S, Goodlett DR, Nesvizhskii AI, Keller A, Xie T, Eng JK, Yi E, Hood L, Picone AF, Cherny T, Tjaden BC, Siegel AF, et al. Initial proteome analysis of model microorganism Haemophilus influenzae strain Rd KW20. Journal of Bacteriology. 185: 4593-602. PMID 12867470 DOI: 10.1128/Jb.185.15.4593-4602.2003  0.805
2003 Guina T, Wu M, Miller SI, Purvine SO, Yi EC, Eng J, Goodlett DR, Aebersold R, Ernst RK, Lee KA. Proteomic analysis of Pseudomonas aeruginosa grown under magnesium limitation. Journal of the American Society For Mass Spectrometry. 14: 742-51. PMID 12837596 DOI: 10.1016/S1044-0305(03)00133-8  0.833
2003 Shiio Y, Eisenman RN, Yi EC, Donohoe S, Goodlett DR, Aebersold R. Quantitative proteomic analysis of chromatin-associated factors. Journal of the American Society For Mass Spectrometry. 14: 696-703. PMID 12837591 DOI: 10.1016/S1044-0305(03)00204-6  0.685
2003 Purvine S, Eppel JT, Yi EC, Goodlett DR. Shotgun collision-induced dissociation of peptides using a time of flight mass analyzer. Proteomics. 3: 847-50. PMID 12833507 DOI: 10.1002/Pmic.200300362  0.792
2003 von Haller PD, Yi E, Donohoe S, Vaughn K, Keller A, Nesvizhskii AI, Eng J, Li XJ, Goodlett DR, Aebersold R, Watts JD. The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: II. Evaluation of tandem mass spectrometry methodologies for large-scale protein analysis, and the application of statistical tools for data analysis and interpretation. Molecular & Cellular Proteomics : McP. 2: 428-42. PMID 12832459 DOI: 10.1074/Mcp.M300041-Mcp200  0.83
2003 von Haller PD, Yi E, Donohoe S, Vaughn K, Keller A, Nesvizhskii AI, Eng J, Li XJ, Goodlett DR, Aebersold R, Watts JD. The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: I. Statistically annotated datasets for peptide sequences and proteins identified via the application of ICAT and tandem mass spectrometry to proteins copurifying with T cell lipid rafts. Molecular & Cellular Proteomics : McP. 2: 426-7. PMID 12832456 DOI: 10.1074/Mcp.D300002-Mcp200  0.82
2003 Utleg AG, Yi EC, Xie T, Shannon P, White JT, Goodlett DR, Hood L, Lin B. Proteomic analysis of human prostasomes. The Prostate. 56: 150-61. PMID 12746840 DOI: 10.1002/Pros.10255  0.662
2003 Sydorskyy Y, Dilworth DJ, Yi EC, Goodlett DR, Wozniak RW, Aitchison JD. Intersection of the Kap123p-mediated nuclear import and ribosome export pathways Molecular and Cellular Biology. 23: 2042-2054. PMID 12612077 DOI: 10.1128/MCB.23.6.2042-2054.2003  0.687
2003 Guina T, Purvine SO, Yi EC, Eng J, Goodlett DR, Aebersold R, Miller SI. Quantitative proteomic analysis indicates increased synthesis of a quinolone by Pseudomonas aeruginosa isolates from cystic fibrosis airways. Proceedings of the National Academy of Sciences of the United States of America. 100: 2771-6. PMID 12601166 DOI: 10.1073/Pnas.0435846100  0.754
2003 Ranish JA, Yi EC, Leslie DM, Purvine SO, Goodlett DR, Eng J, Aebersold R. The study of macromolecular complexes by quantitative proteomics. Nature Genetics. 33: 349-55. PMID 12590263 DOI: 10.1038/Ng1101  0.762
2003 Goodlett DR, Yi EC. Stable isotopic labeling and mass spectrometry as a means to determine differences in protein expression Trac - Trends in Analytical Chemistry. 22: 282-290. DOI: 10.1016/S0165-9936(03)00505-3  0.623
2002 Baliga NS, Pan M, Goo YA, Yi EC, Goodlett DR, Dimitrov K, Shannon P, Aebersold R, Ng WV, Hood L. Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach. Proceedings of the National Academy of Sciences of the United States of America. 99: 14913-8. PMID 12403819 DOI: 10.1073/Pnas.192558999  0.778
2002 Shiio Y, Donohoe S, Yi EC, Goodlett DR, Aebersold R, Eisenman RN. Quantitative proteomic analysis of Myc oncoprotein function. The Embo Journal. 21: 5088-96. PMID 12356725 DOI: 10.1093/Emboj/Cdf525  0.676
2002 Yi EC, Marelli M, Lee H, Purvine SO, Aebersold R, Aitchison JD, Goodlett DR. Approaching complete peroxisome characterization by gas-phase fractionation. Electrophoresis. 23: 3205-16. PMID 12298092 DOI: 10.1002/1522-2683(200209)23:18<3205::Aid-Elps3205>3.0.Co;2-Y  0.812
2002 Goodlett DR, Yi EC. Proteomics without polyacrylamide: qualitative and quantitative uses of tandem mass spectrometry in proteome analysis. Functional & Integrative Genomics. 2: 138-53. PMID 12192588 DOI: 10.1007/s10142-001-0041-3  0.652
2002 Keller A, Purvine S, Nesvizhskii AI, Stolyar S, Goodlett DR, Kolker E. Experimental protein mixture for validating tandem mass spectral analysis. Omics : a Journal of Integrative Biology. 6: 207-12. PMID 12143966 DOI: 10.1089/153623102760092805  0.603
2002 Dramsi S, Scheid MP, Maiti A, Hojabrpour P, Chen X, Schubert K, Goodlett DR, Aebersold R, Duronio V. Identification of a novel phosphorylation site, Ser-170, as a regulator of bad pro-apoptotic activity. The Journal of Biological Chemistry. 277: 6399-405. PMID 11717309 DOI: 10.1074/Jbc.M109990200  0.361
2001 Griffin TJ, Goodlett DR, Aebersold R. Advances in proteome analysis by mass spectrometry. Current Opinion in Biotechnology. 12: 607-12. PMID 11849943 DOI: 10.1016/S0958-1669(01)00268-3  0.495
2001 Aebersold R, Goodlett DR. Mass spectrometry in proteomics. Chemical Reviews. 101: 269-95. PMID 11712248 DOI: 10.1021/Cr990076H  0.453
2001 von Haller PD, Donohoe S, Goodlett DR, Aebersold R, Watts JD. Mass spectrometric characterization of proteins extracted from Jurkat T cell detergent-resistant membrane domains. Proteomics. 1: 1010-21. PMID 11683502 DOI: 10.1255/Ejms.402  0.555
2001 Goodlett DR, Keller A, Watts JD, Newitt R, Yi EC, Purvine S, Eng JK, von Haller P, Aebersold R, Kolker E. Differential stable isotope labeling of peptides for quantitation and de novo sequence derivation. Rapid Communications in Mass Spectrometry : Rcm. 15: 1214-21. PMID 11445905 DOI: 10.1002/Rcm.362  0.749
2001 Ideker T, Thorsson V, Ranish JA, Christmas R, Buhler J, Eng JK, Bumgarner R, Goodlett DR, Aebersold R, Hood L. Integrated genomic and proteomic analyses of a systematically perturbed metabolic network. Science (New York, N.Y.). 292: 929-34. PMID 11340206 DOI: 10.1126/Science.292.5518.929  0.527
2001 Hayashi F, Smith KD, Ozinsky A, Hawn TR, Yi EC, Goodlett DR, Eng JK, Akira S, Underhill DM, Aderem A. The innate immune response to bacterial flagellin is mediated by Toll-like receptor 5. Nature. 410: 1099-103. PMID 11323673 DOI: 10.1038/35074106  0.559
2000 Katze MG, Kwieciszewski B, Goodlett DR, Blakely CM, Neddermann P, Tan SL, Aebersold R. Ser2194 is a highly conserved major phosphorylation site of the hepatitis c virus nonstructural protein NS5A Virology. 278: 501-513. PMID 11118372 DOI: 10.1006/Viro.2000.0662  0.384
2000 Heller M, Goodlett DR, Watts JD, Aebersold R. A comprehensive characterization of the T-cell antigen receptor complex composition by microcapillary liquid chromatography-tandem mass spectrometry. Electrophoresis. 21: 2180-95. PMID 10892729 DOI: 10.1002/1522-2683(20000601)21:11<2180::Aid-Elps2180>3.0.Co;2-#  0.437
2000 Goodlett DR, Bruce JE, Anderson GA, Rist B, Pasa-Tolic L, Fiehn O, Smith RD, Aebersold R. Protein identification with a single accurate mass of a cysteine- containing peptide and constrained database searching Analytical Chemistry. 72: 1112-1118. PMID 10740847 DOI: 10.1021/Ac9913210  0.546
2000 Goodlett DR, Aebersold R, Watts JD. Quantitative in vitro kinase reaction as a guide for phosphoprotein analysis by mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 14: 344-8. PMID 10700036 DOI: 10.1002/(Sici)1097-0231(20000315)14:5<344::Aid-Rcm866>3.0.Co;2-W  0.452
1999 Gallis B, Corthals GL, Goodlett DR, Ueba H, Kim F, Presnell SR, Figeys D, Harrison DG, Berk BC, Aebersold R, Corson MA. Identification of flow-dependent endothelial nitric-oxide synthase phosphorylation sites by mass spectrometry and regulation of phosphorylation and nitric oxide production by the phosphatidylinositol 3-kinase inhibitor LY294002 Journal of Biological Chemistry. 274: 30101-30108. PMID 10514497 DOI: 10.1074/Jbc.274.42.30101  0.777
1999 Susin SA, Lorenzo HK, Zamzami N, Marzo I, Snow BE, Brothers GM, Mangion J, Jacotot E, Costantini P, Loeffler M, Larochette N, Goodlett DR, Aebersold R, Siderovski DP, Penninger JM, et al. Molecular characterization of mitochondrial apoptosis-inducing factor. Nature. 397: 441-6. PMID 9989411 DOI: 10.1038/17135  0.341
1996 Smith RD, Udseth HR, Wahl JH, Goodlett DR, Hofstadler SA. Capillary electrophoresis-mass spectrometry. Methods in Enzymology. 271: 448-86. PMID 8782565 DOI: 10.1016/S0076-6879(96)71021-2  0.363
1995 Goodlett DR, Abuaf PA, Savage PA, Kowalski KA, Mukherjee TK, Tolan JW, Corkum N, Goldstein G, Crowther JB. Peptide chiral purity determination: hydrolysis in deuterated acid, derivatization with Marfey's reagent and analysis using high-performance liquid chromatography-electrospray ionization-mass spectrometry. Journal of Chromatography. A. 707: 233-44. PMID 7633594 DOI: 10.1016/0021-9673(95)00352-N  0.306
1994 Gale DC, Goodlett DR, Light-Wahl KJ, Smith RD. Observation of Duplex DNA-Drug Noncovalent Complexes by Electrospray Ionization Mass Spectrometry Journal of the American Chemical Society. 116: 6027-6028. DOI: 10.1021/Ja00092A087  0.41
1993 Goodlett DR, Camp DG, Hardin CC, Corregan M, Smith RD. Direct observation of a DNA quadruplex by electrospray ionization mass spectrometry. Biological Mass Spectrometry. 22: 181-3. PMID 8461341 DOI: 10.1002/Bms.1200220307  0.418
1993 Wahl JH, Goodlett DR, Udseth HR, Smith RD. Use of small-diameter capillaries for increasing peptide and protein detection sensitivity in capillary electrophoresis-mass spectrometry. Electrophoresis. 14: 448-57. PMID 8354228 DOI: 10.1002/Elps.1150140170  0.418
1993 Saljoughian M, Williams PG, Morimoto H, Goodlett DR, Van Breemen RB. Tritiated diimide: A regio- and stereo-selective tritium-labelling reagent Journal of the Chemical Society, Chemical Communications. 414-416. DOI: 10.1039/C39930000414  0.387
1993 Loo RRO, Goodlett DR, Smith RD, Loo JA. Observation of a noncovalent ribonuclease S-protein/S-peptide complex by electrospray ionization mass spectrometry Journal of the American Chemical Society. 115: 4391-4392. DOI: 10.1021/Ja00063A079  0.354
1993 Goodlett DR, Wahl JH, Udseth HR, Smith RD. Reduced elution speed detection for capillary electrophoresis/mass spectrometry Journal of Microcolumn Separations. 5: 57-62. DOI: 10.1002/Mcs.1220050109  0.41
1992 Wahl JH, Goodlett DR, Udseth HR, Smith RD. Attomole level capillary electrophoresis-mass spectrometric protein analysis using 5 .mu.m i.d. capillaries Analytical Chemistry. 64: 3194-3196. DOI: 10.1021/Ac00048A019  0.383
1988 Bartol FF, Wiley AA, Goodlett DR. Ovine uterine morphogenesis: histochemical aspects of endometrial development in the fetus and neonate. Journal of Animal Science. 66: 1303-13. PMID 3397353 DOI: 10.2527/Jas1988.6651303X  0.511
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