Mahesh Narayan, Biophysics - Publications

Affiliations: 
Chemistry University of Texas at El Paso, El Paso, TX, United States 
Area:
Biochemistry
Website:
http://orspprofile.utep.edu/profilesystem/editprofile.php?onlyview=1&pid=1014#1

58 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Ullah K, Zubia E, Narayan M, Yang J, Xu G. Diverse roles of the E2/E3 hybrid enzyme UBE2O in the regulation of protein ubiquitination, cellular functions, and disease onset. The Febs Journal. PMID 30468556 DOI: 10.1111/febs.14708  0.48
2018 Xiong L, Yan W, Zubia E, Zhou Y, Zhang Y, Duan Q, Narayan M, Xu G. Quantitative proteomics and biochemical analyses reveal the role of endoplasmin in the regulation of the expression and secretion of A Disintegrin And Metalloproteinase 12. Journal of Proteomics. PMID 29729432 DOI: 10.1016/j.jprot.2018.04.033  0.48
2017 Mendez L, Henriquez G, Sirimulla S, Narayan M. Looking Back, Looking Forward at Halogen Bonding in Drug Discovery. Molecules (Basel, Switzerland). 22. PMID 28837116 DOI: 10.3390/molecules22091397  0.52
2017 Serrano M, Gonzalez V, Ray S, Chavez MD, Narayan M. Identification of Structure-Stabilizing Interactions in Enzymes: A Novel Mechanism to Impact Enzyme Activity. Cell Biochemistry and Biophysics. PMID 28756483 DOI: 10.1007/s12013-017-0816-3  0.6
2016 Koebel MR, Cooper A, Schmadeke G, Jeon S, Narayan M, Sirimulla S. S···O and S···N Sulfur Bonding Interactions in Protein-Ligand Complexes: Empirical Considerations and Scoring Function. Journal of Chemical Information and Modeling. PMID 27936771 DOI: 10.1021/acs.jcim.6b00236  0.52
2016 Khalil MF, Valenzuela C, Sisniega D, Skouta R, Narayan M. ER Protein Processing Under Oxidative Stress: Implications and Prevention. Cell Biochemistry and Biophysics. PMID 26983927 DOI: 10.1007/s12013-016-0726-9  1
2016 Subramani R, Gonzalez E, Arumugam A, Nandy S, Gonzalez V, Medel J, Camacho F, Ortega A, Bonkoungou S, Narayan M, Dwivedi AK, Lakshmanaswamy R. Nimbolide inhibits pancreatic cancer growth and metastasis through ROS-mediated apoptosis and inhibition of epithelial-to-mesenchymal transition. Scientific Reports. 6: 19819. PMID 26804739 DOI: 10.1038/srep19819  1
2015 Kabiraj P, Valenzuela CA, Marin JE, Ramirez DA, Mendez L, Hwang MS, Varela-Ramirez A, Fenelon K, Narayan M, Skouta R. The Neuroprotective Role of Ferrostatin-1 Under Rotenone-Induced Oxidative Stress in Dopaminergic Neuroblastoma Cells. The Protein Journal. 34: 349-58. PMID 26385697 DOI: 10.1007/s10930-015-9629-7  1
2014 Kabiraj P, Marin JE, Varela-Ramirez A, Zubia E, Narayan M. Ellagic acid mitigates SNO-PDI induced aggregation of Parkinsonian biomarkers. Acs Chemical Neuroscience. 5: 1209-20. PMID 25247703 DOI: 10.1021/cn500214k  1
2014 Arumugam A, Agullo P, Boopalan T, Nandy S, Lopez R, Gutierrez C, Narayan M, Rajkumar L. Neem leaf extract inhibits mammary carcinogenesis by altering cell proliferation, apoptosis, and angiogenesis. Cancer Biology & Therapy. 15: 26-34. PMID 24146019 DOI: 10.4161/cbt.26604  1
2013 Sirimulla S, Bailey JB, Vegesna R, Narayan M. Halogen interactions in protein-ligand complexes: Implications of halogen bonding for rational drug design Journal of Chemical Information and Modeling. 53: 2781-2791. PMID 24134121 DOI: 10.1021/ci400257k  1
2012 Sirimulla S, Pal R, Raparla M, Bailey JB, Duran R, Altamirano AM, Herndon WC, Narayan M. Identification of Novel Nitrosative Stress Inhibitors through Virtual Screening and Experimental Evaluation. Molecular Informatics. 31: 167-72. PMID 27476961 DOI: 10.1002/minf.201100044  0.88
2012 Kabiraj P, Pal R, Varela-Ramirez A, Miranda M, Narayan M. Nitrosative stress mediated misfolded protein aggregation mitigated by Na-D-β-hydroxybutyrate intervention. Biochemical and Biophysical Research Communications. 426: 438-44. PMID 22974977 DOI: 10.1016/j.bbrc.2012.08.121  1
2012 Narayan M. Disulfide bonds: protein folding and subcellular protein trafficking. The Febs Journal. 279: 2272-82. PMID 22594874 DOI: 10.1111/j.1742-4658.2012.08636.x  1
2012 Sirimulla S, Pal R, Raparla M, Bailey JB, Duran R, Altamirano AM, Herndon WC, Narayan M. Identification of novel nitrosative stress inhibitors through virtual screening and experimental evaluation Molecular Informatics. 31: 167-172. DOI: 10.1002/minf.201100044  1
2011 Pal R, Miranda M, Narayan M. Nitrosative stress-induced Parkinsonian Lewy-like aggregates prevented through polyphenolic phytochemical analog intervention. Biochemical and Biophysical Research Communications. 404: 324-9. PMID 21130735 DOI: 10.1016/j.bbrc.2010.11.117  1
2011 Jessica GJ, Laura RL, Pal R, Gardea-Torresdey JL, Narayan M. From folklore to molecular pharmacophores: Cultivating STEM students among young, first-generation female Mexican-Americans Journal of Chemical Education. 88: 41-43. DOI: 10.1021/ed100557u  1
2011 Narayan M. The case of oxidative folding of ribonuclease A: Factors impacting fold maturation of ER-processed proteins Protein Reviews. 14: 23-42. DOI: 10.1007/978-1-4419-7273-6-2  1
2011 Pinales LA, Chianelli RR, Durrer WG, Pal R, Narayan M, Manciu FS. Spectroscopic study of inhibition of calcium oxalate calculi growth by Larrea tridentata Journal of Raman Spectroscopy. 42: 259-264. DOI: 10.1002/jrs.2742  1
2010 Gonzalez V, Pal R, Narayan M. The oxidoreductase behavior of protein disulfide isomerase impedes fold maturation of endoplasmic reticulum-processed proteins in the pivotal structure-coupled step of oxidative folding: implications for subcellular protein trafficking. Biochemistry. 49: 6282-9. PMID 20568731 DOI: 10.1021/bi100753s  1
2010 Pal R, Cristan EA, Schnittker K, Narayan M. Rescue of ER oxidoreductase function through polyphenolic phytochemical intervention: implications for subcellular traffic and neurodegenerative disorders. Biochemical and Biophysical Research Communications. 392: 567-71. PMID 20097158 DOI: 10.1016/j.bbrc.2010.01.071  1
2010 Pal R, Gonzalez V, Narayan M. Reshuffling activity of protein disulfide isomerase reduces refolding yield in the structure-forming step of the oxidative protein folding reaction Chemistry Letters. 39: 263-265. DOI: 10.1246/cl.2010.263  1
2009 Peralta-Videa JR, Lopez ML, Narayan M, Saupe G, Gardea-Torresdey J. The biochemistry of environmental heavy metal uptake by plants: implications for the food chain. The International Journal of Biochemistry & Cell Biology. 41: 1665-77. PMID 19433308 DOI: 10.1016/j.biocel.2009.03.005  1
2008 Narayan M, Welker E, Zhai H, Han X, Xu G, McLafferty FW, Scheraga HA. Detecting native folds in mixtures of proteins that contain disulfide bonds. Nature Biotechnology. 26: 427-9. PMID 18278035 DOI: 10.1038/nbt1380  1
2008 Gahl RF, Narayan M, Xu G, Scheraga HA. Dissimilarity in the oxidative folding of onconase and ribonuclease A, two structural homologues. Protein Engineering, Design & Selection : Peds. 21: 223-31. PMID 18245105 DOI: 10.1093/protein/gzm093  1
2008 Wang YH, Narayan M. pH dependence of the isomerase activity of protein disulfide isomerase: insights into its functional relevance. The Protein Journal. 27: 181-5. PMID 18074210 DOI: 10.1007/s10930-007-9121-0  1
2008 Fink M, Nieves P, Chang S, Narayan M. Non-redox-active small-molecules can accelerate oxidative protein folding by novel mechanisms. Biophysical Chemistry. 132: 104-9. PMID 18045767 DOI: 10.1016/j.bpc.2007.10.014  1
2007 Gomez G, Mansouraty G, Gardea J, Narayan M. Acceleration of oxidative protein folding by curcumin through novel non-redox chemistry. Biochemical and Biophysical Research Communications. 364: 561-6. PMID 17959149 DOI: 10.1016/j.bbrc.2007.10.024  1
2007 Welker E, Hathaway L, Xu G, Narayan M, Pradeep L, Shin HC, Scheraga HA. Oxidative folding and N-terminal cyclization of onconase. Biochemistry. 46: 5485-93. PMID 17439243 DOI: 10.1021/bi602495a  1
2006 Xu G, Narayan M, Kurinov I, Ripoll DR, Welker E, Khalili M, Ealick SE, Scheraga HA. A localized specific interaction alters the unfolding pathways of structural homologues. Journal of the American Chemical Society. 128: 1204-13. PMID 16433537 DOI: 10.1021/ja055313e  1
2005 Xu G, Narayan M, Scheraga HA. The oxidative folding rate of bovine pancreatic ribonuclease is enhanced by a covalently attached oligosaccharide. Biochemistry. 44: 9817-23. PMID 16008366 DOI: 10.1021/bi0506932  1
2005 Leung HJ, Xu G, Narayan M, Scheraga HA. Impact of an easily reducible disulfide bond on the oxidative folding rate of multi-disulfide-containing proteins. The Journal of Peptide Research : Official Journal of the American Peptide Society. 65: 47-54. PMID 15686534 DOI: 10.1111/j.1399-3011.2004.00189.x  1
2004 Gahl RF, Narayan M, Xu G, Scheraga HA. Trimethylamine-N-oxide modulates the reductive unfolding of onconase. Biochemical and Biophysical Research Communications. 325: 707-10. PMID 15541346 DOI: 10.1016/j.bbrc.2004.10.088  1
2004 Xu G, Zhai H, Narayan M, McLafferty FW, Scheraga HA. Simultaneous characterization of the reductive unfolding pathways of RNase B isoforms by top-down mass spectrometry. Chemistry & Biology. 11: 517-24. PMID 15123246 DOI: 10.1016/j.chembiol.2004.03.020  1
2004 Chaudhuri D, Narayan M, Berliner LJ. Conformation-dependent interaction of alpha-lactalbumin with model and biological membranes: a spin-label ESR study. The Protein Journal. 23: 95-101. PMID 15115187 DOI: 10.1023/B:JOPC.0000016263.50484.e1  1
2004 Narayan M, Xu G, Ripoll DR, Zhai H, Breuker K, Wanjalla C, Leung HJ, Navon A, Welker E, McLafferty FW, Scheraga HA. Dissimilarity in the reductive unfolding pathways of two ribonuclease homologues. Journal of Molecular Biology. 338: 795-809. PMID 15099746 DOI: 10.1016/j.jmb.2004.03.014  1
2004 Xu G, Narayan M, Welker E, Scheraga HA. Characterization of the fast-forming intermediate, des [30-75], in the reductive unfolding of onconase. Biochemistry. 43: 3246-54. PMID 15023075 DOI: 10.1021/bi036215d  1
2003 Narayan M, Xu G, Schultz SK, Scheraga HA. Assessing the magnitude of folding forces along the oxidative folding pathway of multi-disulfide-containing proteins. Journal of the American Chemical Society. 125: 16184-5. PMID 14692748 DOI: 10.1021/ja0305398  1
2003 Xu G, Narayan M, Welker E, Scheraga HA. A novel method to determine thermal transition curves of disulfide-containing proteins and their structured folding intermediates. Biochemical and Biophysical Research Communications. 311: 514-7. PMID 14592446 DOI: 10.1016/j.bbrc.2003.10.039  1
2003 Shin HC, Narayan M, Song MC, Scheraga HA. Role of the [65-72] disulfide bond in oxidative folding of bovine pancreatic ribonuclease A. Biochemistry. 42: 11514-9. PMID 14516203 DOI: 10.1021/bi030152h  1
2003 Narayan M, Welker E, Wanjalla C, Xu G, Scheraga HA. Shifting the competition between the intramolecular Reshuffling reaction and the direct oxidation reaction during the oxidative folding of kinetically trapped disulfide-insecure intermediates. Biochemistry. 42: 10783-9. PMID 12962503 DOI: 10.1021/bi030141o  1
2003 Narayan M, Welker E, Scheraga HA. Characterizing the unstructured intermediates in oxidative folding. Biochemistry. 42: 6947-55. PMID 12795589 DOI: 10.1021/bi030054w  1
2003 Narayan M, Welker E, Scheraga HA. Native conformational tendencies in unfolded polypeptides: development of a novel method to assess native conformational tendencies in the reduced forms of multiple disulfide-bonded proteins. Journal of the American Chemical Society. 125: 2036-7. PMID 12590517 DOI: 10.1021/ja021252y  1
2002 English BP, Welker E, Narayan M, Scheraga HA. Development of a novel method to populate native disulfide-bonded intermediates for structural characterization of proteins: implications for the mechanism of oxidative folding of RNase A. Journal of the American Chemical Society. 124: 4995-9. PMID 11982363 DOI: 10.1021/ja012634r  1
2001 Welker E, Wedemeyer WJ, Narayan M, Scheraga HA. Coupling of conformational folding and disulfide-bond reactions in oxidative folding of proteins. Biochemistry. 40: 9059-64. PMID 11478871 DOI: 10.1021/bi010409g  1
2001 Narayan M, Welker E, Scheraga HA. Development of a novel method to study the rate-determining step during protein regeneration: application to the oxidative folding of RNase A at low temperature reveals BPTI-like kinetic traps. Journal of the American Chemical Society. 123: 2909-10. PMID 11456989 DOI: 10.1021/ja003934w  1
2001 Welker E, Narayan M, Wedemeyer WJ, Scheraga HA. Structural determinants of oxidative folding in proteins. Proceedings of the National Academy of Sciences of the United States of America. 98: 2312-6. PMID 11226236 DOI: 10.1073/pnas.041615798  1
2000 Narayan M, Welker E, Wedemeyer WJ, Scheraga HA. Oxidative folding of proteins. Accounts of Chemical Research. 33: 805-12. PMID 11087317 DOI: 10.1021/ar000063m  1
2000 Wedemeyer WJ, Welker E, Narayan M, Scheraga HA. Disulfide bonds and protein folding Biochemistry. 39: 7032. PMID 10841785  1
2000 Low LK, Shin HC, Narayan M, Wedemeyer WJ, Scheraga HA. Acceleration of oxidative folding of bovine pancreatic ribonuclease A by anion-induced stabilization and formation of structured native-like intermediates. Febs Letters. 472: 67-72. PMID 10781807 DOI: 10.1016/S0014-5793(00)01432-0  1
2000 Wedemeyer WJ, Welker E, Narayan M, Scheraga HA. Disulfide bonds and protein folding. Biochemistry. 39: 4207-16. PMID 10757967 DOI: 10.1021/bi992922o  1
1999 Welker E, Narayan M, Volles MJ, Scheraga HA. Two new structured intermediates in the oxidative folding of RNase A. Febs Letters. 460: 477-9. PMID 10556520 DOI: 10.1016/S0014-5793(99)01391-5  1
1999 Veprintsev DB, Narayan M, Permyakov SE, Uversky VN, Brooks CL, Cherskaya AM, Permyakov EA, Berliner LJ. Fine tuning the N-terminus of a calcium binding protein: alpha-lactalbumin. Proteins. 37: 65-72. PMID 10451551 DOI: 10.1002/(SICI)1097-0134(19991001)37:1<65::AID-PROT7>3.0.CO;2-2  1
1998 Narayan M, Berliner LJ. Mapping fatty acid binding to beta-lactoglobulin: Ligand binding is restricted by modification of Cys 121. Protein Science : a Publication of the Protein Society. 7: 150-7. PMID 9514270 DOI: 10.1002/pro.5560070116  1
1997 Cawthern KM, Narayan M, Chaudhuri D, Permyakov EA, Berliner LJ. Interactions of alpha-lactalbumin with fatty acids and spin label analogs. The Journal of Biological Chemistry. 272: 30812-6. PMID 9388223 DOI: 10.1074/jbc.272.49.30812  1
1997 Narayan M, Berliner LJ, Merola AJ, Diaz PT, Clanton TL. Biological reactions of peroxynitrite: evidence for an alternative pathway of salicylate hydroxylation. Free Radical Research. 27: 63-72. PMID 9269581  1
1997 Narayan M, Berliner LJ. Fatty acids and retinoids bind independently and simultaneously to beta-lactoglobulin. Biochemistry. 36: 1906-11. PMID 9048577 DOI: 10.1021/bi9621526  1
1997 Narayan M, Wright VP, Berliner LJ, Diaz PT, Merola AJ, Clanton TL. Do nitric oxide and peroxynitrite contribute to hydroxylation reactions in fatigued diaphragm? Faseb Journal. 11: A13.  1
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