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Mikel Valle - Publications

Affiliations: 
Natl. Center of Biotechnology (CSIC) 
 CIC bioGUNE, Spain 
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36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Lázaro M, Melero R, Huet C, López-Alonso JP, Delgado S, Dodu A, Bruch EM, Abriata LA, Alzari PM, Valle M, Lisa MN. 3D architecture and structural flexibility revealed in the subfamily of large glutamate dehydrogenases by a mycobacterial enzyme. Communications Biology. 4: 684. PMID 34083757 DOI: 10.1038/s42003-021-02222-x  0.635
2015 Fernández-Millán P, Lázaro M, Canslz-Arda Ş, Gerhold JM, Rajala N, Schmitz CA, Silva-Espiña C, Gil D, Bernadó P, Valle M, Spelbrink JN, Solà M. The hexameric structure of the human mitochondrial replicative helicase Twinkle Nucleic Acids Research. 43: 4284-4295. PMID 25824949 DOI: 10.1093/Nar/Gkv189  0.3
2011 Melero R, Rajagopalan S, Lázaro M, Joerger AC, Brandt T, Veprintsev DB, Lasso G, Gil D, Scheres SH, Carazo JM, Fersht AR, Valle M. Electron microscopy studies on the quaternary structure of p53 reveal different binding modes for p53 tetramers in complex with DNA. Proceedings of the National Academy of Sciences of the United States of America. 108: 557-62. PMID 21178074 DOI: 10.1073/Pnas.1015520107  0.753
2009 Scheres SHW, Melero R, Valle M, Carazo JM. Averaging of electron subtomograms and random conical tilt reconstructions through likelihood optimization. Structure (London, England : 1993). 17: 1563-1572. PMID 20004160 DOI: 10.1016/J.Str.2009.10.009  0.725
2009 Scheres SH, Valle M, Grob P, Nogales E, Carazo JM. Maximum likelihood refinement of electron microscopy data with normalization errors. Journal of Structural Biology. 166: 234-40. PMID 19236920 DOI: 10.1016/J.Jsb.2009.02.007  0.574
2008 Julián P, Konevega AL, Scheres SH, Lázaro M, Gil D, Wintermeyer W, Rodnina MV, Valle M. Structure of ratcheted ribosomes with tRNAs in hybrid states. Proceedings of the National Academy of Sciences of the United States of America. 105: 16924-7. PMID 18971332 DOI: 10.1073/pnas.0809587105  0.576
2007 Tidow H, Melero R, Mylonas E, Freund SM, Grossmann JG, Carazo JM, Svergun DI, Valle M, Fersht AR. Quaternary structures of tumor suppressor p53 and a specific p53 DNA complex. Proceedings of the National Academy of Sciences of the United States of America. 104: 12324-9. PMID 17620598 DOI: 10.1073/Pnas.0705069104  0.766
2007 Scheres SH, Gao H, Valle M, Herman GT, Eggermont PP, Frank J, Carazo JM. Disentangling conformational states of macromolecules in 3D-EM through likelihood optimization. Nature Methods. 4: 27-9. PMID 17179934 DOI: 10.1038/Nmeth992  0.714
2006 Valle M, Chen XS, Donate LE, Fanning E, Carazo JM. Structural basis for the cooperative assembly of large T antigen on the origin of replication. Journal of Molecular Biology. 357: 1295-305. PMID 16481006 DOI: 10.1016/J.Jmb.2006.01.021  0.706
2005 Scheres SH, Valle M, Carazo JM. Fast maximum-likelihood refinement of electron microscopy images. Bioinformatics (Oxford, England). 21: ii243-4. PMID 16204112 DOI: 10.1093/Bioinformatics/Bti1140  0.715
2005 Gao N, Zavialov AV, Li W, Sengupta J, Valle M, Gursky RP, Ehrenberg M, Frank J. Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies. Molecular Cell. 18: 663-74. PMID 15949441 DOI: 10.1016/J.Molcel.2005.05.005  0.605
2005 Scheres SH, Valle M, Nuñez R, Sorzano CO, Marabini R, Herman GT, Carazo JM. Maximum-likelihood multi-reference refinement for electron microscopy images. Journal of Molecular Biology. 348: 139-49. PMID 15808859 DOI: 10.1016/J.Jmb.2005.02.031  0.724
2005 Agirrezabala X, Martín-Benito J, Valle M, González JM, Valencia A, Valpuesta JM, Carrascosa JL. Structure of the connector of bacteriophage T7 at 8A resolution: structural homologies of a basic component of a DNA translocating machinery. Journal of Molecular Biology. 347: 895-902. PMID 15784250 DOI: 10.1016/J.Jmb.2005.02.005  0.558
2005 Frank J, Sengupta J, Gao H, Li W, Valle M, Zavialov A, Ehrenberg M. The role of tRNA as a molecular spring in decoding, accommodation, and peptidyl transfer. Febs Letters. 579: 959-62. PMID 15680982 DOI: 10.1016/J.Febslet.2004.10.105  0.595
2004 Gao H, Valle M, Ehrenberg M, Frank J. Dynamics of EF-G interaction with the ribosome explored by classification of a heterogeneous cryo-EM dataset. Journal of Structural Biology. 147: 283-90. PMID 15450297 DOI: 10.1016/J.Jsb.2004.02.008  0.611
2004 Gao H, Valle M, Ehrenberg M, Frank J. Corrigendum to “Dynamics of EF-G interaction with the ribosome explored by classification of a heterogeneous cryo-EM dataset” [J. Struct. Biol. 147 (2004) 283–290] Journal of Structural Biology. 148: 375. DOI: 10.1016/J.Jsb.2004.09.002  0.549
2003 Gomez-Lorenzo MG, Valle M, Frank J, Gruss C, Sorzano CO, Chen XS, Donate LE, Carazo JM. Large T antigen on the simian virus 40 origin of replication: a 3D snapshot prior to DNA replication. The Embo Journal. 22: 6205-13. PMID 14633980 DOI: 10.1093/Emboj/Cdg612  0.734
2003 Valle M, Zavialov A, Li W, Stagg SM, Sengupta J, Nielsen RC, Nissen P, Harvey SC, Ehrenberg M, Frank J. Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy. Nature Structural Biology. 10: 899-906. PMID 14566331 DOI: 10.1038/Nsb1003  0.62
2003 Tama F, Valle M, Frank J, Brooks CL. Dynamic reorganization of the functionally active ribosome explored by normal mode analysis and cryo-electron microscopy. Proceedings of the National Academy of Sciences of the United States of America. 100: 9319-23. PMID 12878726 DOI: 10.1073/Pnas.1632476100  0.585
2003 Valle M, Zavialov A, Sengupta J, Rawat U, Ehrenberg M, Frank J. Locking and unlocking of ribosomal motions. Cell. 114: 123-34. PMID 12859903 DOI: 10.1016/S0092-8674(03)00476-8  0.587
2003 Gao H, Sengupta J, Valle M, Korostelev A, Eswar N, Stagg SM, Van Roey P, Agrawal RK, Harvey SC, Sali A, Chapman MS, Frank J. Study of the structural dynamics of the E coli 70S ribosome using real-space refinement. Cell. 113: 789-801. PMID 12809609 DOI: 10.1016/S0092-8674(03)00427-6  0.593
2003 Valle M, Gillet R, Kaur S, Henne A, Ramakrishnan V, Frank J. Visualizing tmRNA entry into a stalled ribosome Science. 300: 127-130. PMID 12677067 DOI: 10.1126/Science.1081798  0.581
2003 Yarus M, Valle M, Frank J. A twisted tRNA intermediate sets the threshold for decoding. Rna (New York, N.Y.). 9: 384-5. PMID 12649490 DOI: 10.1261/Rna.2184703  0.574
2003 Rawat UB, Zavialov AV, Sengupta J, Valle M, Grassucci RA, Linde J, Vestergaard B, Ehrenberg M, Frank J. A cryo-electron microscopic study of ribosome-bound termination factor RF2. Nature. 421: 87-90. PMID 12511960 DOI: 10.1038/Nature01224  0.593
2002 Stagg SM, Valle M, Agrawal RK, Frank J, Harvey SC. Problems with the transorientation hypothesis. Rna (New York, N.Y.). 8: 1093-4. PMID 12358427 DOI: 10.1017/S1355838202027061  0.615
2002 Valle M, Sengupta J, Swami NK, Grassucci RA, Burkhardt N, Nierhaus KH, Agrawal RK, Frank J. Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process. The Embo Journal. 21: 3557-67. PMID 12093756 DOI: 10.1093/Emboj/Cdf326  0.623
2002 Frank J, Sengupta J, Valle M, Agrawal R. The Ribosome – Ligand Interactions and Dynamics as Inferred by Cryo-EM Microscopy and Microanalysis. 8: 206-207. DOI: 10.1017/S1431927602100031  0.496
2001 Gabashvili IS, Gregory ST, Valle M, Grassucci R, Worbs M, Wahl MC, Dahlberg AE, Frank J. The polypeptide tunnel system in the ribosome and its gating in erythromycin resistance mutants of L4 and L22. Molecular Cell. 8: 181-8. PMID 11511371 DOI: 10.1016/S1097-2765(01)00293-3  0.573
2001 Pascual-Montano A, Donate LE, Valle M, Bárcena M, Pascual-Marqui RD, Carazo JM. A novel neural network technique for analysis and classification of EM single-particle images. Journal of Structural Biology. 133: 233-45. PMID 11472094 DOI: 10.1006/Jsbi.2001.4369  0.737
2000 Ibarra B, Castón JR, Llorca O, Valle M, Valpuesta JM, Carrascosa JL. Topology of the components of the DNA packaging machinery in the phage phi29 prohead. Journal of Molecular Biology. 298: 807-15. PMID 10801350 DOI: 10.1006/Jmbi.2000.3712  0.601
2000 Valle M, Gruss C, Halmer L, Carazo JM, Donate LE. Large T-antigen double hexamers imaged at the simian virus 40 origin of replication. Molecular and Cellular Biology. 20: 34-41. PMID 10594006 DOI: 10.1128/Mcb.20.1.34-41.2000  0.674
1999 Moncalián G, Cabezón E, Alkorta I, Valle M, Moro F, Valpuesta JM, Goñi FM, Cruz Fdl. Characterization of ATP and DNA binding activities of TrwB, the coupling protein essential in plasmid R388 conjugation. Journal of Biological Chemistry. 274: 36117-36124. PMID 10593894 DOI: 10.1074/Jbc.274.51.36117  0.367
1999 Valle M, Kremer L, Martínez-A C, Roncal F, Valpuesta JM, Albar JP, Carrascosa JL. Domain architecture of the bacteriophage phi29 connector protein. Journal of Molecular Biology. 288: 899-909. PMID 10329188 DOI: 10.1006/Jmbi.1999.2731  0.614
1999 Valle M, Muñoz M, Kremer L, Valpuesta JM, Martínez-A C, Carrascosa JL, Albar JP. Selection of antibody probes to correlate protein sequence domains with their structural distribution. Protein Science : a Publication of the Protein Society. 8: 883-9. PMID 10211834 DOI: 10.1110/Ps.8.4.883  0.558
1999 Moncalián G, Valle M, Valpuesta JM, de la Cruz F. IHF protein inhibits cleavage but not assembly of plasmid R388 relaxosomes. Molecular Microbiology. 31: 1643-52. PMID 10209739 DOI: 10.1046/J.1365-2958.1999.01288.X  0.31
1997 Valle M, Valpuesta JM, Carrascosa JL, Tamayo J, Garcia R. The interaction of DNA with bacteriophage phi 29 connector: a study by AFM and TEM. Journal of Structural Biology. 116: 390-8. PMID 8812997 DOI: 10.1006/Jsbi.1996.0056  0.572
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