Year |
Citation |
Score |
2023 |
Gumerov VM, Ulrich LE, Zhulin IB. MiST 4.0: a new release of the microbial signal transduction database, now with a metagenomic component. Nucleic Acids Research. PMID 37791884 DOI: 10.1093/nar/gkad847 |
0.681 |
|
2019 |
Gumerov VM, Ortega DR, Adebali O, Ulrich LE, Zhulin IB. MiST 3.0: an updated microbial signal transduction database with an emphasis on chemosensory systems. Nucleic Acids Research. PMID 31754718 DOI: 10.1093/Nar/Gkz988 |
0.731 |
|
2014 |
Ulrich LE, Zhulin IB. SeqDepot: streamlined database of biological sequences and precomputed features. Bioinformatics (Oxford, England). 30: 295-7. PMID 24234005 DOI: 10.1093/Bioinformatics/Btt658 |
0.596 |
|
2013 |
van Kessel JC, Ulrich LE, Zhulin IB, Bassler BL. Analysis of activator and repressor functions reveals the requirements for transcriptional control by LuxR, the master regulator of quorum sensing in Vibrio harveyi. Mbio. 4. PMID 23839217 DOI: 10.1128/Mbio.00378-13 |
0.589 |
|
2010 |
Xie Z, Ulrich LE, Zhulin IB, Alexandre G. PAS domain containing chemoreceptor couples dynamic changes in metabolism with chemotaxis. Proceedings of the National Academy of Sciences of the United States of America. 107: 2235-40. PMID 20133866 DOI: 10.1073/Pnas.0910055107 |
0.644 |
|
2010 |
Ulrich LE, Zhulin IB. The MiST2 database: a comprehensive genomics resource on microbial signal transduction. Nucleic Acids Research. 38: D401-7. PMID 19900966 DOI: 10.1093/Nar/Gkp940 |
0.715 |
|
2009 |
Staroń A, Sofia HJ, Dietrich S, Ulrich LE, Liesegang H, Mascher T. The third pillar of bacterial signal transduction: classification of the extracytoplasmic function (ECF) sigma factor protein family. Molecular Microbiology. 74: 557-81. PMID 19737356 DOI: 10.1111/J.1365-2958.2009.06870.X |
0.518 |
|
2009 |
Anderson I, Ulrich LE, Lupa B, Susanti D, Porat I, Hooper SD, Lykidis A, Sieprawska-Lupa M, Dharmarajan L, Goltsman E, Lapidus A, Saunders E, Han C, Land M, Lucas S, et al. Genomic characterization of methanomicrobiales reveals three classes of methanogens. Plos One. 4: e5797. PMID 19495416 DOI: 10.1371/Journal.Pone.0005797 |
0.402 |
|
2009 |
Anderson IJ, Dharmarajan L, Rodriguez J, Hooper S, Porat I, Ulrich LE, Elkins JG, Mavromatis K, Sun H, Land M, Lapidus A, Lucas S, Barry K, Huber H, Zhulin IB, et al. The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota. Bmc Genomics. 10: 145. PMID 19341479 DOI: 10.1186/1471-2164-10-145 |
0.636 |
|
2008 |
Anderson I, Rodriguez J, Susanti D, Porat I, Reich C, Ulrich LE, Elkins JG, Mavromatis K, Lykidis A, Kim E, Thompson LS, Nolan M, Land M, Copeland A, Lapidus A, et al. Genome sequence of Thermofilum pendens reveals an exceptional loss of biosynthetic pathways without genome reduction. Journal of Bacteriology. 190: 2957-65. PMID 18263724 DOI: 10.1128/Jb.01949-07 |
0.649 |
|
2007 |
Moran MA, Belas R, Schell MA, González JM, Sun F, Sun S, Binder BJ, Edmonds J, Ye W, Orcutt B, Howard EC, Meile C, Palefsky W, Goesmann A, Ren Q, ... ... Ulrich LE, et al. Ecological genomics of marine Roseobacters. Applied and Environmental Microbiology. 73: 4559-69. PMID 17526795 DOI: 10.1128/Aem.02580-06 |
0.516 |
|
2007 |
Ulrich LE, Zhulin IB. MiST: a microbial signal transduction database. Nucleic Acids Research. 35: D386-90. PMID 17135192 DOI: 10.1093/Nar/Gkl932 |
0.72 |
|
2006 |
Chain PS, Denef VJ, Konstantinidis KT, Vergez LM, Agulló L, Reyes VL, Hauser L, Córdova M, Gómez L, González M, Land M, Lao V, Larimer F, LiPuma JJ, Mahenthiralingam E, ... ... Ulrich LE, et al. Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility. Proceedings of the National Academy of Sciences of the United States of America. 103: 15280-7. PMID 17030797 DOI: 10.1073/Pnas.0606924103 |
0.676 |
|
2006 |
Wu M, Ren Q, Durkin AS, Daugherty SC, Brinkac LM, Dodson RJ, Madupu R, Sullivan SA, Kolonay JF, Haft DH, Nelson WC, Tallon LJ, Jones KM, Ulrich LE, Gonzalez JM, et al. Correction: Life in Hot Carbon Monoxide: The Complete Genome Sequence of Carboxydothermus hydrogenoformans Z-2901 Plos Genetics. 2: e60. DOI: 10.1371/Journal.Pgen.0020060 |
0.619 |
|
2005 |
Wu M, Ren Q, Durkin AS, Daugherty SC, Brinkac LM, Dodson RJ, Madupu R, Sullivan SA, Kolonay JF, Haft DH, Nelson WC, Tallon LJ, Jones KM, Ulrich LE, Gonzalez JM, et al. Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901. Plos Genetics. 1: e65. PMID 16311624 DOI: 10.1371/Journal.Pgen.0010065 |
0.628 |
|
2005 |
Ulrich LE, Zhulin IB. Four-helix bundle: a ubiquitous sensory module in prokaryotic signal transduction. Bioinformatics (Oxford, England). 21: iii45-8. PMID 16306392 DOI: 10.1093/Bioinformatics/Bti1204 |
0.621 |
|
2005 |
Ulrich LE, Koonin EV, Zhulin IB. One-component systems dominate signal transduction in prokaryotes. Trends in Microbiology. 13: 52-6. PMID 15680762 DOI: 10.1016/J.Tim.2004.12.006 |
0.632 |
|
2003 |
Shu CJ, Ulrich LE, Zhulin IB. The NIT domain: a predicted nitrate-responsive module in bacterial sensory receptors. Trends in Biochemical Sciences. 28: 121-4. PMID 12633990 DOI: 10.1016/S0968-0004(03)00032-X |
0.605 |
|
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