John S. Parkinson - Related publications

Affiliations: 
Biology University of Utah, Salt Lake City, UT 
Area:
signal transduction, molecular genetics, microbial physiology
Website:
http://www.biology.utah.edu/people/details.php?id=263
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2020 Morales P, Bruix M, Jiménez MA. Structural Insights into β-arrestin/CB1 Receptor Interaction: NMR and CD Studies on Model Peptides. International Journal of Molecular Sciences. 21. PMID 33143110 DOI: 10.3390/ijms21218111   
2020 Pacheco S, Quiliche JPJ, Gómez I, Sánchez J, Soberón M, Bravo A. Rearrangement of N-Terminal α-Helices of Cry1Ab Toxin Essential for Oligomer Assembly and Toxicity. Toxins. 12. PMID 33049917 DOI: 10.3390/toxins12100647   
2020 Gavira JA, Matilla MA, Fernández M, Krell T. The structural basis for signal promiscuity in a bacterial chemoreceptor. The Febs Journal. PMID 33021055 DOI: 10.1111/febs.15580   
2020 Singh R, Deshmukh S, Kumar A, Goyal VD, Makde RD. Crystal structure of XCC3289 from Xanthomonas campestris: homology with the N-terminal substrate-binding domain of Lon peptidase. Acta Crystallographica. Section F, Structural Biology Communications. 76: 488-494. PMID 33006577 DOI: 10.1107/S2053230X20011875   
2020 Ghode A, Gross LZF, Tee WV, Guarnera E, Berezovsky IN, Biondi RM, Anand GS. Synergistic Allostery in Multiligand-Protein Interactions. Biophysical Journal. 119: 1833-1848. PMID 33086047 DOI: 10.1016/j.bpj.2020.09.019   
2020 Gutiérrez A, Ferreira GM, Machuca J, Venthur H, Feres F, Hirata MH, Hirata RDC, Cerda A. Characterization of the adipogenic protein E4orf1 from adenovirus 36 through an in silico approach. Journal of Molecular Modeling. 26: 285. PMID 32978703 DOI: 10.1007/s00894-020-04531-0   
2020 Cozier GE, Lubbe L, Sturrock ED, Acharya KR. Angiotensin-converting enzyme open for business: structural insights into the sub-domain dynamics. The Febs Journal. PMID 33067882 DOI: 10.1111/febs.15601   
2020 Zohib M, Maheshwari D, Pal RK, Freitag-Pohl S, Biswal BK, Pohl E, Arora A. Crystal structure of the GDP-bound GTPase domain of Rab5a from Leishmania donovani. Acta Crystallographica. Section F, Structural Biology Communications. 76: 544-556. PMID 33135673 DOI: 10.1107/S2053230X20013722   
2020 Hinostroza F, Neely A, Araya-Duran I, Marabolí V, Canan J, Rojas M, Aguayo D, Latorre R, González-Nilo FD, Cárdenas AM. Dynamin-2 R465W mutation induces long range perturbation in highly ordered oligomeric structures. Scientific Reports. 10: 18151. PMID 33097808 DOI: 10.1038/s41598-020-75216-0   
2020 Chen H, Egger M, Xu X, Flemmich L, Krasheninina O, Sun A, Micura R, Ren A. Structural distinctions between NAD+ riboswitch domains 1 and 2 determine differential folding and ligand binding. Nucleic Acids Research. PMID 33170270 DOI: 10.1093/nar/gkaa1029   
2020 Hahn H, Lee DE, Jang DM, Kim J, Lee Y, Cheong H, Han BW, Kim HS. Structural Insight on Functional Regulation of Human MINERVA Protein. International Journal of Molecular Sciences. 21. PMID 33142954 DOI: 10.3390/ijms21218186   
2020 Li Z, Yuan W, Lin Z. Functional roles in cell signaling of adaptor protein TRADD from a structural perspective. Computational and Structural Biotechnology Journal. 18: 2867-2876. PMID 33163147 DOI: 10.1016/j.csbj.2020.10.008   
2020 Kumawat A, Chakrabarty S. Protonation-Induced Dynamic Allostery in PDZ Domain: Evidence of Perturbation-Independent Universal Response Network. The Journal of Physical Chemistry Letters. 9026-9031. PMID 33043672 DOI: 10.1021/acs.jpclett.0c02885   
2020 Shakya AK, Pratap JV. The coiled-coil domain of glycosomal membrane-associated Leishmania donovani PEX14: cloning, overexpression, purification and preliminary crystallographic analysis. Acta Crystallographica. Section F, Structural Biology Communications. 76: 464-468. PMID 33006573 DOI: 10.1107/S2053230X20011127   
2020 Bozovic O, Zanobini C, Gulzar A, Jankovic B, Buhrke D, Post M, Wolf S, Stock G, Hamm P. Real-time observation of ligand-induced allosteric transitions in a PDZ domain. Proceedings of the National Academy of Sciences of the United States of America. PMID 33020277 DOI: 10.1073/pnas.2012999117   
2020 Gulsevin A, Meiler J, Horenstein NA. A Computational Analysis of the Factors Governing the Dynamics of α7 nAChR and Its Homologs. Biophysical Journal. PMID 33010233 DOI: 10.1016/j.bpj.2020.09.006   
2020 Ren SM, Liu F, Wu YQ, Chen Q, Zhang ZJ, Yu HL, Xu JH. Identification two key residues at the intersection of domains of a thioether monooxygenase for improving its sulfoxidation performance. Biotechnology and Bioengineering. PMID 33073356 DOI: 10.1002/bit.27604   
2020 Qi Z, Xu Y, Wang X, Jiang J, Meng F, Zhang Q, Huang B. Structural analysis of toll-like receptor 18 from soiny mullet (Liza haematocheila): Giving insights on the ligand binding mechanism of fish specific TLRs. Fish & Shellfish Immunology. PMID 33098989 DOI: 10.1016/j.fsi.2020.10.024   
2020 Soubias O, Pant S, Heinrich F, Zhang Y, Roy NS, Li J, Jian X, Yohe ME, Randazzo PA, Lösche M, Tajkhorshid E, Byrd RA. Membrane surface recognition by the ASAP1 PH domain and consequences for interactions with the small GTPase Arf1. Science Advances. 6. PMID 32998886 DOI: 10.1126/sciadv.abd1882   
2020 Lai CH, Chang CC, Chuang HC, Tan TH, Lyu PC. Structural Insights into the Active Site Formation of DUSP22 in N-loop-containing Protein Tyrosine Phosphatases. International Journal of Molecular Sciences. 21. PMID 33053837 DOI: 10.3390/ijms21207515   
2020 Hadda Y, Remes M, Adam V, Heger Z. Toward structure-based drug design against the epidermal growth factor receptor (EGFR). Drug Discovery Today. PMID 33075469 DOI: 10.1016/j.drudis.2020.10.007   
2020 Kim Y, Jeong E, Jeong JH, Kim Y, Cho Y. Structural Basis for Activation of the Heterodimeric GABA Receptor. Journal of Molecular Biology. PMID 33058878 DOI: 10.1016/j.jmb.2020.09.023   
2020 Rattila S, Kleefeldt F, Ballesteros A, Beltrame JS, L Ribeiro M, Ergün S, Dveksler G. Pro-angiogenic effects of pregnancy-specific glycoproteins in endothelial and extravillous trophoblast cells. Reproduction (Cambridge, England). 160: 737-750. PMID 33065549 DOI: 10.1530/REP-20-0169   
2020 Neira JL, Rizzuti B, Jiménez-Alesanco A, Palomino-Schätzlein M, Abián O, Velázquez-Campoy A, Iovanna JL. A Phosphorylation-Induced Switch in the Nuclear Localization Sequence of the Intrinsically Disordered NUPR1 Hampers Binding to Importin. Biomolecules. 10. PMID 32933064 DOI: 10.3390/biom10091313   
2020 Sandall CF, Ziehr BK, MacDonald JA. ATP-Binding and Hydrolysis in Inflammasome Activation. Molecules (Basel, Switzerland). 25. PMID 33036374 DOI: 10.3390/molecules25194572   
2020 Muthuramalingam M, Whittier SK, Lovell S, Battaile KP, Tachiyama S, Johnson DK, Picking WL, Picking WD. The Structures of SctK and SctD from Pseudomonas aeruginosa Reveal the Interface of the Type III Secretion System Basal Body and Sorting Platform. Journal of Molecular Biology. PMID 33122003 DOI: 10.1016/j.jmb.2020.10.027   
2020 Zheng L, Chenavas S, Kieken F, Trease A, Brownell S, Anbanandam A, Sorgen PL, Spagnol G. Calmodulin Directly Interacts with the Cx43 Carboxyl-Terminus and Cytoplasmic Loop Containing Three ODDD-Linked Mutants (M147T, R148Q, and T154A) that Retain α-Helical Structure, but Exhibit Loss-of-Function and Cellular Trafficking Defects. Biomolecules. 10. PMID 33080786 DOI: 10.3390/biom10101452   
2020 Brown HE, Evans TA. Minimal structural elements required for midline repulsive signaling and regulation of Drosophila Robo1. Plos One. 15: e0241150. PMID 33091076 DOI: 10.1371/journal.pone.0241150   
2020 Fujino Y, Miyagawa T, Torii M, Inoue M, Fujii Y, Okanishi H, Kanai Y, Masui R. Structural changes induced by ligand-binding drastically increase the thermostability of the Ser/Thr protein kinase TpkD from Thermus thermophilus HB8. Febs Letters. PMID 33159808 DOI: 10.1002/1873-3468.13996   
2020 Jiang Y, Liu T, Lee CH, Chang Q, Yang J, Zhang Z. The NAD-mediated self-inhibition mechanism of pro-neurodegenerative Sarm1. Nature. PMID 33053563 DOI: 10.1038/s41586-020-2862-z   
2020 Nyenhuis DA, Nilaweera TD, Cafiso DS. Native Cell Environment Constrains Loop Structure in the Escherichia coli Cobalamin Transporter BtuB. Biophysical Journal. 119: 1550-1557. PMID 32946767 DOI: 10.1016/j.bpj.2020.08.034   
2020 Mozumdar D, Doerner A, Zhang JY, Rafizadeh DN, Schepartz A. Discrete Coiled Coil Rotamers Form within the EGFRvIII Juxtamembrane Domain. Biochemistry. PMID 32941004 DOI: 10.1021/acs.biochem.0c00641   
2020 Dominguez-Martin MA, Hammel M, Gupta S, Lechno-Yossef S, Sutter M, Rosenberg DJ, Chen Y, Petzold CJ, Ralston CY, Polívka T, Kerfeld CA. Structural analysis of a new carotenoid-binding protein: the C-terminal domain homolog of the OCP. Scientific Reports. 10: 15564. PMID 32968135 DOI: 10.1038/s41598-020-72383-y   
2020 Yao X, Chen C, Wang Y, Dong S, Liu YJ, Li Y, Cui Z, Gong W, Perrett S, Yao L, Lamed R, Bayer EA, Cui Q, Feng Y. Discovery and mechanism of a pH-dependent dual-binding-site switch in the interaction of a pair of protein modules. Science Advances. 6. PMID 33097546 DOI: 10.1126/sciadv.abd7182   
2020 López A, Elimelech AR, Klimm K, Sattler M. The charged linker modulates conformations and molecular interactions of Hsp90. Chembiochem : a European Journal of Chemical Biology. PMID 33147371 DOI: 10.1002/cbic.202000699   
2020 Vance TDR, Ye Q, Conroy B, Davies PL. Essential role of calcium in extending RTX adhesins to their target. Journal of Structural Biology: X. 4: 100036. PMID 32984811 DOI: 10.1016/j.yjsbx.2020.100036   
2020 Silva SRB, de Lima Neto JX, Fuzo CA, Fulco UL, Vieira DS. A quantum biochemistry investigation of the protein-protein interactions for the description of allosteric modulation on biomass-degrading chimera. Physical Chemistry Chemical Physics : Pccp. PMID 33164009 DOI: 10.1039/d0cp04415f   
2020 Hsu SH, Chu CH, Tian YC, Chang MY, Chou LF, Sun YJ, Yang CW. Crystal structure of Leptospira leucine-rich repeat 20 reveals a novel E-cadherin binding protein to induce NGAL expression in HK2 cells. The Biochemical Journal. PMID 33094809 DOI: 10.1042/BCJ20200547   
2020 Rosenberg EM, Herrington J, Rajasekaran D, Murphy JW, Pantouris G, Lolis EJ. The N-terminal length and side-chain composition of CXCL13 affect crystallization, structure and functional activity. Acta Crystallographica. Section D, Structural Biology. 76: 1033-1049. PMID 33021505 DOI: 10.1107/S2059798320011687   
2020 Kracht M, van den Boom J, Seiler J, Kröning A, Kaschani F, Kaiser M, Meyer H. Protein phosphatase-1 complex disassembly by p97 is initiated through multivalent recognition of catalytic and regulatory subunits by the p97 SEP-domain adapters. Journal of Molecular Biology. PMID 33058883 DOI: 10.1016/j.jmb.2020.10.001   
2020 Fukuhara S, Kobayashi K, Kusakizako T, Iida W, Kato M, Shihoya W, Nureki O. Structure of the human secretin receptor coupled to an engineered heterotrimeric G protein. Biochemical and Biophysical Research Communications. PMID 33008599 DOI: 10.1016/j.bbrc.2020.08.042   
2020 Olotu FA, Omolabi KF, Soliman MES. Leaving no stone unturned: Allosteric targeting of SARS-CoV-2 spike protein at putative druggable sites disrupts human angiotensin-converting enzyme interactions at the receptor binding domain. Informatics in Medicine Unlocked. 21: 100451. PMID 33083517 DOI: 10.1016/j.imu.2020.100451   
2020 Sena da Silva IH, Gómez I, Pacheco S, Sánchez J, Zhang J, Luque Castellane TC, Aparecida Desiderio J, Soberón M, Bravo A, Polanczyk RA. Cry1Ab domain III β-16 is involved in binding to prohibitin which correlates with toxicity against (Lepidoptera: Noctuidae). Applied and Environmental Microbiology. PMID 33127814 DOI: 10.1128/AEM.01930-20   
2020 Santoro AM, D'Urso A, Cunsolo A, Milardi D, Purrello R, Sbardella D, Tundo GR, Diana D, Fattorusso R, Dato AD, Paladino A, Persico M, Coletta M, Fattorusso C. Cooperative Binding of the Cationic Porphyrin Tris-T4 Enhances Catalytic Activity of 20S Proteasome Unveiling a Complex Distribution of Functional States. International Journal of Molecular Sciences. 21. PMID 33003385 DOI: 10.3390/ijms21197190   
2020 Iwata T, Yamada D, Mikuni K, Agata K, Hitomi K, Getzoff ED, Kandori H. ATP binding promotes light-induced structural changes to the protein moiety of cryptochrome 1. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. 19: 1326-1331. PMID 32935701 DOI: 10.1039/d0pp00003e   
2020 Yan Z, Wang J. Funneled energy landscape unifies principles of protein binding and evolution. Proceedings of the National Academy of Sciences of the United States of America. PMID 33067388 DOI: 10.1073/pnas.2013822117   
2020 Hurdiss DL, Drulyte I, Lang Y, Shamorkina TM, Pronker MF, van Kuppeveld FJM, Snijder J, de Groot RJ. Cryo-EM structure of coronavirus-HKU1 haemagglutinin esterase reveals architectural changes arising from prolonged circulation in humans. Nature Communications. 11: 4646. PMID 32938911 DOI: 10.1038/s41467-020-18440-6   
2020 Sharma V, Shing B, Hernandez-Alvarez L, Debnath A, Podust LM. . Molecular Pharmacology. PMID 33008918 DOI: 10.1124/molpharm.120.000092   
2020 Zhuang L, Vogel M, Villiger PM, Trueb B. Dissecting the Interaction of FGF8 with Receptor FGFRL1. Biomolecules. 10. PMID 33019532 DOI: 10.3390/biom10101399   
2020 Karlsson E, Paissoni C, Erkelens AM, Tehranizadeh ZA, Sorgenfrei FA, Andersson E, Ye W, Camilloni C, Jemth P. Mapping the transition state for a binding reaction between ancient intrinsically disordered proteins. The Journal of Biological Chemistry. PMID 33067355 DOI: 10.1074/jbc.RA120.015645