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Shweta Deshpande, Ph.D. - Publications

Affiliations: 
University of Oklahoma, Norman, OK, United States 
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73 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Ciobanu D, Clum A, Ahrendt S, Andreopoulos WB, Salamov A, Chan S, Quandt CA, Foster B, Meier-Kolthoff JP, Tang YT, Schwientek P, Benny GL, Smith ME, Bauer D, Deshpande S, et al. A single-cell genomics pipeline for environmental microbial eukaryotes. Iscience. 24: 102290. PMID 33870123 DOI: 10.1016/j.isci.2021.102290  0.522
2021 Lovell JT, MacQueen AH, Mamidi S, Bonnette J, Jenkins J, Napier JD, Sreedasyam A, Healey A, Session A, Shu S, Barry K, Bonos S, Boston L, Daum C, Deshpande S, et al. Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass. Nature. PMID 33505029 DOI: 10.1038/s41586-020-03127-1  0.38
2018 Carro L, Nouioui I, Sangal V, Meier-Kolthoff JP, Trujillo ME, Montero-Calasanz MDC, Sahin N, Smith DL, Kim KE, Peluso P, Deshpande S, Woyke T, Shapiro N, Kyrpides NC, Klenk HP, et al. Genome-based classification of micromonosporae with a focus on their biotechnological and ecological potential. Scientific Reports. 8: 525. PMID 29323202 DOI: 10.1038/s41598-017-17392-0  0.521
2016 Singer E, Andreopoulos B, Bowers RM, Lee J, Deshpande S, Chiniquy J, Ciobanu D, Klenk HP, Zane M, Daum C, Clum A, Cheng JF, Copeland A, Woyke T. Next generation sequencing data of a defined microbial mock community. Scientific Data. 3: 160081. PMID 27673566 DOI: 10.1038/Sdata.2016.81  0.431
2016 Riley R, Haridas S, Wolfe KH, Lopes MR, Hittinger CT, Göker M, Salamov AA, Wisecaver JH, Long TM, Calvey CH, Aerts AL, Barry KW, Choi C, Clum A, Coughlan AY, ... Deshpande S, et al. Comparative genomics of biotechnologically important yeasts. Proceedings of the National Academy of Sciences of the United States of America. PMID 27535936 DOI: 10.1073/Pnas.1603941113  0.547
2016 Grabowski PP, Evans J, Daum C, Deshpande S, Barry KW, Kennedy M, Ramstein G, Kaeppler SM, Buell CR, Jiang Y, Casler MD. Genome-wide associations with flowering time in switchgrass using exome-capture sequencing data. The New Phytologist. PMID 27443672 DOI: 10.1111/Nph.14101  0.479
2015 Kourist R, Bracharz F, Lorenzen J, Kracht ON, Chovatia M, Daum C, Deshpande S, Lipzen A, Nolan M, Ohm RA, Grigoriev IV, Sun S, Heitman J, Brück T, Nowrousian M. Genomics and Transcriptomics Analyses of the Oil-Accumulating Basidiomycete Yeast Trichosporon oleaginosus: Insights into Substrate Utilization and Alternative Evolutionary Trajectories of Fungal Mating Systems. Mbio. 6: e00918. PMID 26199329 DOI: 10.1128/Mbio.00918-15  0.331
2015 Haase NJ, Beissinger T, Hirsch CN, Vaillancourt B, Deshpande S, Barry K, Buell CR, Kaeppler SM, de Leon N. Shared Genomic Regions Between Derivatives of a Large Segregating Population of Maize Identified Using Bulked Segregant Analysis Sequencing and Traditional Linkage Analysis. G3 (Bethesda, Md.). PMID 26038364 DOI: 10.1534/G3.115.017665  0.348
2015 Sewilam AM, Watson AM, Kassem AM, Clifton S, McDonald MC, Lipski R, Deshpande S, Mansour H, Nimgaonkar VL. Suggested avenues to reduce the stigma of mental illness in the Middle East. The International Journal of Social Psychiatry. 61: 111-20. PMID 24957595 DOI: 10.1177/0020764014537234  0.449
2015 Upadhyaya HD, Vetriventhan M, Deshpande SP, Sivasubramani S, Wallace JG, Buckler ES, Hash CT, Ramu P. Population genetics and structure of a global foxtail millet germplasm collection Plant Genome. 8. DOI: 10.3835/Plantgenome2015.07.0054  0.323
2014 Hirsch CN, Flint-Garcia SA, Beissinger TM, Eichten SR, Deshpande S, Barry K, McMullen MD, Holland JB, Buckler ES, Springer N, Buell CR, de Leon N, Kaeppler SM. Insights into the effects of long-term artificial selection on seed size in maize. Genetics. 198: 409-21. PMID 25037958 DOI: 10.1534/Genetics.114.167155  0.334
2014 Beissinger TM, Hirsch CN, Vaillancourt B, Deshpande S, Barry K, Buell CR, Kaeppler SM, Gianola D, de Leon N. A genome-wide scan for evidence of selection in a maize population under long-term artificial selection for ear number. Genetics. 196: 829-40. PMID 24381334 DOI: 10.1534/Genetics.113.160655  0.353
2013 Khanna N, Ghosh AK, Huntemann M, Deshpande S, Han J, Chen A, Kyrpides N, Mavrommatis K, Szeto E, Markowitz V, Ivanova N, Pagani I, Pati A, Pitluck S, Nolan M, et al. Complete genome sequence of Enterobacter sp. IIT-BT 08: A potential microbial strain for high rate hydrogen production. Standards in Genomic Sciences. 9: 359-69. PMID 24976892 DOI: 10.4056/Sigs.4348035  0.482
2013 Galardini M, Bazzicalupo M, Biondi E, Brambilla E, Brilli M, Bruce D, Chain P, Chen A, Daligault H, Davenport KW, Deshpande S, Detter JC, Goodwin LA, Han C, Han J, et al. Permanent draft genome sequences of the symbiotic nitrogen fixing Ensifer meliloti strains BO21CC and AK58. Standards in Genomic Sciences. 9: 325-33. PMID 24976889 DOI: 10.4056/Sigs.3797438  0.515
2013 Neupane S, Goodwin LA, Högberg N, Kyrpides NC, Alström S, Bruce D, Quintana B, Munk C, Daligault H, Teshima H, Davenport K, Reitenga K, Green L, Chain P, Erkkila T, ... ... Deshpande S, et al. Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4. Standards in Genomic Sciences. 8: 441-9. PMID 24501629 DOI: 10.4056/Sigs.4027757  0.536
2013 Bollmann A, Sedlacek CJ, Norton J, Laanbroek HJ, Suwa Y, Stein LY, Klotz MG, Arp D, Sayavedra-Soto L, Lu M, Bruce D, Detter C, Tapia R, Han J, Woyke T, ... ... Deshpande S, et al. Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations. Standards in Genomic Sciences. 7: 469-82. PMID 24019993 DOI: 10.4056/Sigs.3517166  0.397
2013 Stackebrandt E, Chertkov O, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, et al. Genome sequence of the free-living aerobic spirochete Turneriella parva type strain (H(T)), and emendation of the species Turneriella parva. Standards in Genomic Sciences. 8: 228-38. PMID 23991255 DOI: 10.4056/Sigs.3617113  0.525
2013 Huntemann M, Stackebrandt E, Held B, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, et al. Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055(T)). Standards in Genomic Sciences. 8: 177-87. PMID 23991250 DOI: 10.4056/Sigs.3637201  0.493
2013 Liolos K, Abt B, Scheuner C, Teshima H, Held B, Lapidus A, Nolan M, Lucas S, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Pagani I, Ivanova N, et al. Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692(T)) from the alkaline Lake Magadi in the East African Rift. Standards in Genomic Sciences. 8: 165-76. PMID 23991249 DOI: 10.4056/Sigs.3607108  0.431
2013 Abt B, Göker M, Scheuner C, Han C, Lu M, Misra M, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, et al. Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1(T)), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta, and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema. Standards in Genomic Sciences. 8: 88-105. PMID 23961314 DOI: 10.4056/Sigs.3096473  0.446
2013 Mavromatis K, Stackebrandt E, Held B, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, et al. Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (NGA(T)). Standards in Genomic Sciences. 8: 47-57. PMID 23961311 DOI: 10.4056/Sigs.3547050  0.535
2013 Mavromatis K, Stackebrandt E, Munk C, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, et al. Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437(T)). Standards in Genomic Sciences. 8: 26-36. PMID 23961309 DOI: 10.4056/Sigs.3527032  0.494
2013 Stackebrandt E, Zeytun A, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, et al. Complete genome sequence of Coriobacterium glomerans type strain (PW2(T)) from the midgut of Pyrrhocoris apterus L. (red soldier bug). Standards in Genomic Sciences. 8: 15-25. PMID 23961308 DOI: 10.4056/Sigs.3507020  0.563
2013 Sen A, Beauchemin N, Bruce D, Chain P, Chen A, Walston Davenport K, Deshpande S, Detter C, Furnholm T, Ghodbhane-Gtari F, Goodwin L, Gtari M, Han C, Han J, Huntemann M, et al. Draft genome sequence of Frankia sp. strain QA3, a nitrogen-fixing actinobacterium isolated from the root nodule of Alnus nitida. Genome Announcements. 1: e0010313. PMID 23516220 DOI: 10.1128/Genomea.00103-13  0.429
2013 Ghodhbane-Gtari F, Beauchemin N, Bruce D, Chain P, Chen A, Walston Davenport K, Deshpande S, Detter C, Furnholm T, Goodwin L, Gtari M, Han C, Han J, Huntemann M, Ivanova N, et al. Draft genome sequence of Frankia sp. strain CN3, an atypical, noninfective (Nod-) ineffective (Fix-) isolate from Coriaria nepalensis. Genome Announcements. 1: e0008513. PMID 23516212 DOI: 10.1128/Genomea.00085-13  0.513
2012 Anderson I, Chertkov O, Chen A, Saunders E, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, et al. Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmicute Sulfobacillus acidophilus type strain (NAL(T)). Standards in Genomic Sciences. 6: 1-13. PMID 23407703 DOI: 10.4056/Sigs.2736042  0.49
2012 Kontur WS, Schackwitz WS, Ivanova N, Martin J, Labutti K, Deshpande S, Tice HN, Pennacchio C, Sodergren E, Weinstock GM, Noguera DR, Donohue TJ. Revised sequence and annotation of the Rhodobacter sphaeroides 2.4.1 genome. Journal of Bacteriology. 194: 7016-7. PMID 23209255 DOI: 10.1128/Jb.01214-12  0.52
2012 Copeland A, Zeytun A, Yassawong M, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Mavromatis K, Liolios K, Pagani I, et al. Complete genome sequence of the orange-red pigmented, radioresistant Deinococcus proteolyticus type strain (MRP(T)). Standards in Genomic Sciences. 6: 240-50. PMID 22768367 DOI: 10.4056/Sigs.2756060  0.485
2012 Göker M, Saunders E, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, et al. Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314(T)). Standards in Genomic Sciences. 6: 230-9. PMID 22768366 DOI: 10.4056/Sigs.2726028  0.565
2012 Abt B, Han C, Scheuner C, Lu M, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, et al. Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1(T)), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Sphaerochaeta. Standards in Genomic Sciences. 6: 194-209. PMID 22768363 DOI: 10.4056/Sigs.2796069  0.424
2012 Huntemann M, Teshima H, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, et al. Complete genome sequence of the facultatively anaerobic, appendaged bacterium Muricauda ruestringensis type strain (B1(T)). Standards in Genomic Sciences. 6: 185-93. PMID 22768362 DOI: 10.4056/Sigs.2786069  0.558
2012 Copeland A, Zhang X, Misra M, Lapidus A, Nolan M, Lucas S, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mikhailova N, et al. Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4(T)). Standards in Genomic Sciences. 6: 145-54. PMID 22768358 DOI: 10.4056/Sigs.2475579  0.571
2012 Han C, Kotsyurbenko O, Chertkov O, Held B, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, et al. Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuricurvum kujiense type strain (YK-1(T)). Standards in Genomic Sciences. 6: 94-103. PMID 22675602 DOI: 10.4056/Sigs.2456004  0.466
2012 Copeland A, Gu W, Yasawong M, Lapidus A, Lucas S, Deshpande S, Pagani I, Tapia R, Cheng JF, Goodwin LA, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, et al. Complete genome sequence of the aerobic, heterotroph Marinithermus hydrothermalis type strain (T1(T)) from a deep-sea hydrothermal vent chimney. Standards in Genomic Sciences. 6: 21-30. PMID 22675595 DOI: 10.4056/Sigs.2435521  0.478
2012 Bennetzen JL, Schmutz J, Wang H, Percifield R, Hawkins J, Pontaroli AC, Estep M, Feng L, Vaughn JN, Grimwood J, Jenkins J, Barry K, Lindquist E, Hellsten U, Deshpande S, et al. Reference genome sequence of the model plant Setaria. Nature Biotechnology. 30: 555-61. PMID 22580951 DOI: 10.1038/Nbt.2196  0.625
2011 Göker M, Daligault H, Mwirichia R, Lapidus A, Lucas S, Deshpande S, Pagani I, Tapia R, Cheng JF, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, et al. Complete genome sequence of the thermophilic sulfur-reducer Desulfurobacterium thermolithotrophum type strain (BSA(T)) from a deep-sea hydrothermal vent. Standards in Genomic Sciences. 5: 407-15. PMID 22675590 DOI: 10.4056/Sigs.2465574  0.47
2011 Lapidus A, Chertkov O, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, Huntemann M, et al. Genome sequence of the moderately thermophilic halophile Flexistipes sinusarabici strain (MAS10). Standards in Genomic Sciences. 5: 86-96. PMID 22180813 DOI: 10.4056/Sigs.2235024  0.535
2011 Pati A, Gronow S, Lu M, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, et al. Non-contiguous finished genome sequence of the opportunistic oral pathogen Prevotella multisaccharivorax type strain (PPPA20). Standards in Genomic Sciences. 5: 41-9. PMID 22180809 DOI: 10.4056/Sigs.2164949  0.552
2011 Liolios K, Sikorski J, Lu M, Nolan M, Lapidus A, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Huntemann M, Ivanova N, et al. Complete genome sequence of the gliding, heparinolytic Pedobacter saltans type strain (113). Standards in Genomic Sciences. 5: 30-40. PMID 22180808 DOI: 10.4056/Sigs.2154937  0.504
2011 Young ND, Debellé F, Oldroyd GE, Geurts R, Cannon SB, Udvardi MK, Benedito VA, Mayer KF, Gouzy J, Schoof H, Van de Peer Y, Proost S, Cook DR, Meyers BC, Spannagl M, ... ... Deshpande S, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature. 480: 520-4. PMID 22089132 DOI: 10.1038/Nature10625  0.606
2011 Göker M, Teshima H, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Huntemann M, Liolios K, Ivanova N, et al. Complete genome sequence of the acetate-degrading sulfate reducer Desulfobacca acetoxidans type strain (ASRB2). Standards in Genomic Sciences. 4: 393-401. PMID 21886866 DOI: 10.4056/Sigs.2064705  0.552
2011 Anderson I, Göker M, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Huntemann M, Liolios K, Ivanova N, Pagani I, et al. Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A). Standards in Genomic Sciences. 4: 381-92. PMID 21886865 DOI: 10.4056/Sigs.2014648  0.556
2011 Han C, Mwirichia R, Chertkov O, Held B, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin L, Pitluck S, Huntemann M, Liolios K, et al. Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR). Standards in Genomic Sciences. 4: 371-80. PMID 21886864 DOI: 10.4056/Sigs.2004684  0.471
2011 Han C, Gronow S, Teshima H, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Zeytun A, Tapia R, Goodwin L, Pitluck S, Liolios K, Pagani I, et al. Complete genome sequence of Treponema succinifaciens type strain (6091). Standards in Genomic Sciences. 4: 361-70. PMID 21886863 DOI: 10.4056/Sigs.1984594  0.507
2011 Sikorski J, Teshima H, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Pitluck S, Liolios K, Pagani I, Ivanova N, Huntemann M, Mavromatis K, Ovchinikova G, Pati A, et al. Complete genome sequence of Mahella australiensis type strain (50-1 BON). Standards in Genomic Sciences. 4: 331-41. PMID 21886860 DOI: 10.4056/Sigs.1864526  0.516
2011 Anderson I, Sikorski J, Zeytun A, Nolan M, Lapidus A, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, et al. Complete genome sequence of Nitratifractor salsuginis type strain (E9I37-1). Standards in Genomic Sciences. 4: 322-30. PMID 21886859 DOI: 10.4056/Sigs.1844518  0.532
2011 Ivanova N, Sikorski J, Chertkov O, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Huntemann M, Liolios K, Pagani I, et al. Complete genome sequence of the extremely halophilic Halanaerobium praevalens type strain (GSL). Standards in Genomic Sciences. 4: 312-21. PMID 21886858 DOI: 10.4056/Sigs.1824509  0.491
2011 Huntemann M, Lu M, Nolan M, Lapidus A, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, et al. Complete genome sequence of the thermophilic sulfur-reducer Hippea maritima type strain (MH(2)). Standards in Genomic Sciences. 4: 303-11. PMID 21886857 DOI: 10.4056/Sigs.1814460  0.518
2011 Pati A, Abt B, Teshima H, Nolan M, Lapidus A, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, et al. Complete genome sequence of Cellulophaga lytica type strain (LIM-21). Standards in Genomic Sciences. 4: 221-32. PMID 21677859 DOI: 10.4056/Sigs.1774329  0.569
2011 Göker M, Gronow S, Zeytun A, Nolan M, Lucas S, Lapidus A, Hammon N, Deshpande S, Cheng JF, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Ovchinikova G, et al. Complete genome sequence of Odoribacter splanchnicus type strain (1651/6). Standards in Genomic Sciences. 4: 200-9. PMID 21677857 DOI: 10.4056/Sigs.1714269  0.499
2011 Gronow S, Held B, Lucas S, Lapidus A, Del Rio TG, Nolan M, Tice H, Deshpande S, Cheng JF, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Pati A, et al. Complete genome sequence of Bacteroides salanitronis type strain (BL78). Standards in Genomic Sciences. 4: 191-9. PMID 21677856 DOI: 10.4056/Sigs.1704212  0.499
2011 Wirth R, Chertkov O, Held B, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Ioanna P, et al. Complete genome sequence of Desulfurococcus mucosus type strain (O7/1). Standards in Genomic Sciences. 4: 173-82. PMID 21677854 DOI: 10.4056/Sigs.1644004  0.54
2011 Pukall R, Zeytun A, Lucas S, Lapidus A, Hammon N, Deshpande S, Nolan M, Cheng JF, Pitluck S, Liolios K, Pagani I, Mikhailova N, Ivanova N, Mavromatis K, Pati A, et al. Complete genome sequence of Deinococcus maricopensis type strain (LB-34). Standards in Genomic Sciences. 4: 163-72. PMID 21677853 DOI: 10.4056/Sigs.1633949  0.436
2011 Mavromatis K, Lu M, Misra M, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, et al. Complete genome sequence of Riemerella anatipestifer type strain (ATCC 11845). Standards in Genomic Sciences. 4: 144-53. PMID 21677851 DOI: 10.4056/sigs.1553862  0.535
2011 Pagani I, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Chertkov O, Davenport K, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Mavromatis K, et al. Complete genome sequence of Desulfobulbus propionicus type strain (1pr3). Standards in Genomic Sciences. 4: 100-10. PMID 21475592 DOI: 10.4056/Sigs.1613929  0.563
2011 Ivanova N, Rohde C, Munk C, Nolan M, Lucas S, Del Rio TG, Tice H, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Mavromatis K, et al. Complete genome sequence of Truepera radiovictrix type strain (RQ-24). Standards in Genomic Sciences. 4: 91-9. PMID 21475591 DOI: 10.4056/Sigs.1563919  0.539
2011 Lang E, Teshima H, Lucas S, Lapidus A, Hammon N, Deshpande S, Nolan M, Cheng JF, Pitluck S, Liolios K, Pagani I, Mikhailova N, Ivanova N, Mavromatis K, Pati A, et al. Complete genome sequence of Weeksella virosa type strain (9751). Standards in Genomic Sciences. 4: 81-90. PMID 21475590 DOI: 10.4056/Sigs.1603927  0.45
2011 Abt B, Lu M, Misra M, Han C, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, et al. Complete genome sequence of Cellulophaga algicola type strain (IC166). Standards in Genomic Sciences. 4: 72-80. PMID 21475589 DOI: 10.4056/Sigs.1543845  0.545
2011 Göker M, Cleland D, Saunders E, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, et al. Complete genome sequence of Isosphaera pallida type strain (IS1B). Standards in Genomic Sciences. 4: 63-71. PMID 21475588 DOI: 10.4056/Sigs.1533840  0.563
2011 Pitluck S, Sikorski J, Zeytun A, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Liolios K, Pagani I, Ivanova N, et al. Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1). Standards in Genomic Sciences. 4: 54-62. PMID 21475587 DOI: 10.4056/Sigs.1523807  0.571
2011 Pati A, Gronow S, Zeytun A, Lapidus A, Nolan M, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, et al. Complete genome sequence of Bacteroides helcogenes type strain (P 36-108). Standards in Genomic Sciences. 4: 45-53. PMID 21475586 DOI: 10.4056/Sigs.1513795  0.511
2011 Gronow S, Munk C, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, et al. Complete genome sequence of Paludibacter propionicigenes type strain (WB4). Standards in Genomic Sciences. 4: 36-44. PMID 21475585 DOI: 10.4056/Sigs.1503846  0.545
2011 Han C, Mwirichia R, Chertkov O, Held B, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin L, Pitluck S, Huntemann M, Liolios K, et al. Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR T) Standards in Genomic Sciences. 4: 371-380. DOI: 10.4056/sigs.2004648  0.409
2011 Mavromatis K, Lu M, Misra M, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, et al. Complete genome sequence of riemerella anatipestifer type strain (ATCC 11845 T) Standards in Genomic Sciences. 4: 144-153. DOI: 10.4056/Sigs.1553865  0.53
2010 Del Rio TG, Chertkov O, Yasawong M, Lucas S, Deshpande S, Cheng JF, Detter C, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Pati A, et al. Complete genome sequence of Intrasporangium calvum type strain (7 KIP). Standards in Genomic Sciences. 3: 294-303. PMID 21304734 DOI: 10.4056/Sigs.1263355  0.473
2010 Mavromatis K, Abt B, Brambilla E, Lapidus A, Copeland A, Deshpande S, Nolan M, Lucas S, Tice H, Cheng JF, Han C, Detter JC, Woyke T, Goodwin L, Pitluck S, et al. Complete genome sequence of Coraliomargarita akajimensis type strain (04OKA010-24). Standards in Genomic Sciences. 2: 290-9. PMID 21304713 DOI: 10.4056/Sigs.952166  0.571
2008 Wawrzynski A, Ashfield T, Chen NW, Mammadov J, Nguyen A, Podicheti R, Cannon SB, Thareau V, Ameline-Torregrosa C, Cannon E, Chacko B, Couloux A, Dalwani A, Denny R, Deshpande S, et al. Replication of nonautonomous retroelements in soybean appears to be both recent and common. Plant Physiology. 148: 1760-71. PMID 18952860 DOI: 10.1104/Pp.108.127910  0.753
2008 Innes RW, Ameline-Torregrosa C, Ashfield T, Cannon E, Cannon SB, Chacko B, Chen NW, Couloux A, Dalwani A, Denny R, Deshpande S, Egan AN, Glover N, Hans CS, Howell S, et al. Differential accumulation of retroelements and diversification of NB-LRR disease resistance genes in duplicated regions following polyploidy in the ancestor of soybean. Plant Physiology. 148: 1740-59. PMID 18842825 DOI: 10.1104/Pp.108.127902  0.729
2008 Yang S, Gao M, Xu C, Gao J, Deshpande S, Lin S, Roe BA, Zhu H. Alfalfa benefits from Medicago truncatula: the RCT1 gene from M. truncatula confers broad-spectrum resistance to anthracnose in alfalfa. Proceedings of the National Academy of Sciences of the United States of America. 105: 12164-9. PMID 18719113 DOI: 10.1073/Pnas.0802518105  0.625
2008 Ameline-Torregrosa C, Wang BB, O'Bleness MS, Deshpande S, Zhu H, Roe B, Young ND, Cannon SB. Identification and characterization of nucleotide-binding site-leucine-rich repeat genes in the model plant Medicago truncatula Plant Physiology. 146: 5-21. PMID 17981990 DOI: 10.1104/Pp.107.104588  0.793
2007 Yang S, Gao M, Deshpande S, Lin S, Roe BA, Zhu H. Genetic and physical localization of an anthracnose resistance gene in Medicago truncatula. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 116: 45-52. PMID 17891371 DOI: 10.1007/S00122-007-0645-7  0.56
2007 Schlueter JA, Lin JY, Schlueter SD, Vasylenko-Sanders IF, Deshpande S, Yi J, O'Bleness M, Roe BA, Nelson RT, Scheffler BE, Jackson SA, Shoemaker RC. Gene duplication and paleopolyploidy in soybean and the implications for whole genome sequencing Bmc Genomics. 8. PMID 17880721 DOI: 10.1186/1471-2164-8-330  0.799
2007 Schlueter JA, Vasylenko-Sanders IF, Deshpande S, Yi J, Siegfried M, Roe BA, Schlueter SD, Scheffler BE, Shoemaker RC. The FAD2 gene family of soybean: Insights into the structural and functional divergence of a paleopolyploid genome Crop Science. 47: S-14-S-26. DOI: 10.2135/Cropsci2006.06.0382Tpg  0.725
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